Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92363.t1 | XP_003610625.1 | 96.2 | 480 | 18 | 0 | 12 | 491 | 8 | 487 | 6.80E-264 | 919.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92363.t1 | Q9LH39 | 72.3 | 470 | 127 | 3 | 2 | 470 | 10 | 477 | 1.1e-195 | 684.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92363.t1 | G7K0X5 | 96.2 | 480 | 18 | 0 | 12 | 491 | 8 | 487 | 4.9e-264 | 919.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92363 | MS.gene72828 | PPI |
| MS.gene028082 | MS.gene92363 | PPI |
| MS.gene92363 | MS.gene070082 | PPI |
| MS.gene92363 | MS.gene039946 | PPI |
| MS.gene92363 | MS.gene84987 | PPI |
| MS.gene22262 | MS.gene92363 | PPI |
| MS.gene92363 | MS.gene019112 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92363.t1 | MTR_5g005160 | 94.705 | 491 | 22 | 1 | 1 | 491 | 1 | 487 | 0.0 | 926 |
| MS.gene92363.t1 | MTR_5g026780 | 58.182 | 440 | 181 | 3 | 13 | 450 | 45 | 483 | 0.0 | 519 |
| MS.gene92363.t1 | MTR_5g026780 | 58.182 | 440 | 181 | 3 | 13 | 450 | 29 | 467 | 0.0 | 519 |
| MS.gene92363.t1 | MTR_1g112950 | 58.372 | 430 | 178 | 1 | 13 | 442 | 25 | 453 | 7.87e-180 | 512 |
| MS.gene92363.t1 | MTR_0031s0060 | 53.425 | 438 | 179 | 2 | 3 | 440 | 129 | 541 | 2.16e-164 | 480 |
| MS.gene92363.t1 | MTR_8g085630 | 49.436 | 443 | 220 | 3 | 2 | 441 | 28 | 469 | 7.01e-143 | 419 |
| MS.gene92363.t1 | MTR_5g064750 | 47.045 | 440 | 229 | 3 | 13 | 449 | 24 | 462 | 2.72e-133 | 394 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92363.t1 | AT3G19553 | 72.340 | 470 | 127 | 3 | 2 | 470 | 10 | 477 | 0.0 | 668 |
| MS.gene92363.t1 | AT1G31830 | 56.582 | 433 | 187 | 1 | 8 | 440 | 43 | 474 | 0.0 | 523 |
| MS.gene92363.t1 | AT1G31830 | 56.582 | 433 | 187 | 1 | 8 | 440 | 27 | 458 | 0.0 | 521 |
| MS.gene92363.t1 | AT5G05630 | 56.582 | 433 | 185 | 2 | 13 | 443 | 52 | 483 | 0.0 | 520 |
| MS.gene92363.t1 | AT1G31820 | 53.261 | 460 | 199 | 3 | 13 | 470 | 35 | 480 | 2.03e-167 | 481 |
| MS.gene92363.t1 | AT3G13620 | 46.771 | 449 | 231 | 5 | 9 | 452 | 25 | 470 | 2.00e-131 | 389 |
Find 112 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCGCCTTAGTCTGATTT+TGG | 0.077741 | 5.1:+264585 | None:intergenic |
| CTTTGGATATCCTCTGCTTT+TGG | 0.256985 | 5.1:-264874 | MS.gene92363:CDS |
| GCCCGTATTCCTGCTCTCTT+AGG | 0.274297 | 5.1:-264727 | MS.gene92363:CDS |
| AGAGGTAATAAGGTTAGTTT+TGG | 0.281281 | 5.1:+265081 | None:intergenic |
| ACAACGGTGGCTATGTTCTT+TGG | 0.294038 | 5.1:-264891 | MS.gene92363:CDS |
| GTTACTTCAATAACATGTTT+TGG | 0.298728 | 5.1:-264528 | MS.gene92363:CDS |
| ATTTATCTTGTACCCTATCT+TGG | 0.304077 | 5.1:-263509 | MS.gene92363:CDS |
| TAGAGCAATCAGAGGTAATA+AGG | 0.309669 | 5.1:+265071 | None:intergenic |
| CTGAAAGGTCTATAAAGATT+TGG | 0.310531 | 5.1:+263655 | None:intergenic |
| GAAGTCTCCGGCGGTCCATT+TGG | 0.336911 | 5.1:-265039 | MS.gene92363:CDS |
| TCAGCGGTGATGAGAGCTTC+AGG | 0.337698 | 5.1:+264934 | None:intergenic |
| ACTTATTCTTGTTATGTGTC+TGG | 0.338301 | 5.1:-263578 | MS.gene92363:CDS |
| TTCTTGGCTTGAACCAAGAT+AGG | 0.345537 | 5.1:+263496 | None:intergenic |
| GAAATGGTTTAGTGGTGTTA+TGG | 0.353410 | 5.1:-264821 | MS.gene92363:CDS |
| GAATTTGAATTATTGGGATA+AGG | 0.366638 | 5.1:-264506 | MS.gene92363:CDS |
| CTCAATTTCTTATATGCTAT+AGG | 0.369168 | 5.1:-263724 | MS.gene92363:CDS |
| AGAGTTCCGTTCCAAACATT+TGG | 0.378355 | 5.1:-263634 | MS.gene92363:CDS |
| GCATGGCCGCACCAAATGTT+TGG | 0.379459 | 5.1:+263623 | None:intergenic |
| CTCTGTAATTCAAATAAGTA+AGG | 0.394814 | 5.1:+264692 | None:intergenic |
| AAACTTTCTAGGTCTAAGTA+TGG | 0.399700 | 5.1:-263829 | MS.gene92363:intron |
| GATAAGGCTAGTACTCTTGC+AGG | 0.406915 | 5.1:-264490 | MS.gene92363:CDS |
| TGAGTTCCCCTCCAACTGAA+TGG | 0.407650 | 5.1:-264363 | MS.gene92363:CDS |
| TTGAGAACGTTCTTTGTAAG+TGG | 0.408514 | 5.1:-263550 | MS.gene92363:CDS |
| GAGTTCCCCTCCAACTGAAT+GGG | 0.414167 | 5.1:-264362 | MS.gene92363:CDS |
| TACAGAGGTCTTCACATTGT+TGG | 0.426683 | 5.1:-264676 | MS.gene92363:CDS |
| GCATTCAATTGATTCAGAAC+TGG | 0.430163 | 5.1:-263419 | MS.gene92363:CDS |
| ATTCCGTTGCTAGCAGGAAC+AGG | 0.431465 | 5.1:-264391 | MS.gene92363:CDS |
| GCTGAAGTCGGGATGTTGAT+TGG | 0.436679 | 5.1:-264325 | MS.gene92363:CDS |
| GATGAGCTTTCAGCAAATAC+TGG | 0.438639 | 5.1:-263752 | MS.gene92363:CDS |
| ACCTTCTTGAAAACCCCAAA+AGG | 0.445470 | 5.1:+264849 | None:intergenic |
| ACAGAATCCTCAACTCCAAA+TGG | 0.446257 | 5.1:+265024 | None:intergenic |
| CAAGACAAGACCCTCTACTT+TGG | 0.447099 | 5.1:+263304 | None:intergenic |
| TATGAGCTCACCATTGCCTA+TGG | 0.458600 | 5.1:-263365 | MS.gene92363:CDS |
| TCCCTAAGAGAGCAGGAATA+CGG | 0.463074 | 5.1:+264725 | None:intergenic |
| CGGCGGTCCATTTGGAGTTG+AGG | 0.468150 | 5.1:-265031 | MS.gene92363:CDS |
| GTTGAGGATTCTGTTAGAAC+CGG | 0.475041 | 5.1:-265015 | MS.gene92363:CDS |
| AAGAACAAAGATAACAAGAA+AGG | 0.478885 | 5.1:+264615 | None:intergenic |
| CTGTTCCCAAAATCAGACTA+AGG | 0.482200 | 5.1:-264591 | MS.gene92363:CDS |
| CTTCTTGGAATGAGCAAGAT+GGG | 0.487711 | 5.1:-264211 | MS.gene92363:CDS |
| CCCGTATTCCTGCTCTCTTA+GGG | 0.496526 | 5.1:-264726 | MS.gene92363:CDS |
| TATTTGATTCCGTTGCTAGC+AGG | 0.499339 | 5.1:-264397 | MS.gene92363:CDS |
| AAGTAATCAAGAAACAAAAC+AGG | 0.501951 | 5.1:+264784 | None:intergenic |
| GGTCCTCTTCTATCCTTACT+CGG | 0.505486 | 5.1:-264988 | MS.gene92363:CDS |
| GCCGCTGCCATGTCTAACCT+TGG | 0.505741 | 5.1:-264271 | MS.gene92363:CDS |
| ATCAATTGAATGCCAACCAT+TGG | 0.506251 | 5.1:+263429 | None:intergenic |
| GACCTTGATGAGAATACAGC+TGG | 0.509598 | 5.1:+264181 | None:intergenic |
| TTCCAGCTGTATTCTCATCA+AGG | 0.510551 | 5.1:-264183 | MS.gene92363:intron |
| CTGGAGTTATCTTCTTGTCA+TGG | 0.515465 | 5.1:-263774 | MS.gene92363:CDS |
| GGCTAGTACTCTTGCAGGGG+AGG | 0.516455 | 5.1:-264485 | MS.gene92363:CDS |
| CCCTAAGAGAGCAGGAATAC+GGG | 0.517547 | 5.1:+264726 | None:intergenic |
| AGAACAAAGATAACAAGAAA+GGG | 0.517753 | 5.1:+264616 | None:intergenic |
| TTTCTGCTTCAAACAATCCA+AGG | 0.520360 | 5.1:+264254 | None:intergenic |
| ACTTCTTGGAATGAGCAAGA+TGG | 0.526526 | 5.1:-264212 | MS.gene92363:CDS |
| CCTCCAACTGAATGGGCTGA+TGG | 0.532272 | 5.1:-264355 | MS.gene92363:CDS |
| AGCAGGAGGCAAACAAAGCA+TGG | 0.533056 | 5.1:+263606 | None:intergenic |
| CTATAGCATATAAGAAATTG+AGG | 0.538180 | 5.1:+263725 | None:intergenic |
| AACGTGATCCCTAAGAGAGC+AGG | 0.540767 | 5.1:+264718 | None:intergenic |
| CTAATCTTCTACGAAGTCTC+CGG | 0.544287 | 5.1:-265051 | MS.gene92363:CDS |
| CCATCAGCCCATTCAGTTGG+AGG | 0.547465 | 5.1:+264355 | None:intergenic |
| GAGAATAAAATGCTAATAGT+CGG | 0.552107 | 5.1:+263802 | None:intergenic |
| TCTTGGCTTGAACCAAGATA+GGG | 0.561433 | 5.1:+263497 | None:intergenic |
| CTCAACTCCAAATGGACCGC+CGG | 0.561696 | 5.1:+265032 | None:intergenic |
| TAACCATCAGCCCATTCAGT+TGG | 0.562028 | 5.1:+264352 | None:intergenic |
| CATCAGCCCATTCAGTTGGA+GGG | 0.563433 | 5.1:+264356 | None:intergenic |
| GAACATAGCCACCGTTGTGA+GGG | 0.565973 | 5.1:+264896 | None:intergenic |
| GACAATTCTTCTTCCACCAT+AGG | 0.566948 | 5.1:+263349 | None:intergenic |
| GTTTGGAACGGAACTCTGAA+AGG | 0.570334 | 5.1:+263640 | None:intergenic |
| TCAATTGATTCAGAACTGGT+TGG | 0.570609 | 5.1:-263415 | MS.gene92363:CDS |
| TGTCATCACCTTCCAATGGT+TGG | 0.570626 | 5.1:-263441 | MS.gene92363:CDS |
| GTGGTTCTAATCCAAAGTAG+AGG | 0.573793 | 5.1:-263315 | None:intergenic |
| AGTGGAGCAGTAGTAATCGT+TGG | 0.575855 | 5.1:-263532 | MS.gene92363:CDS |
| CCTTCTTGAAAACCCCAAAA+GGG | 0.576626 | 5.1:+264850 | None:intergenic |
| ACTAAGGCGATGGTTTGTTG+TGG | 0.579545 | 5.1:-264575 | MS.gene92363:CDS |
| ATCAGCCCATTCAGTTGGAG+GGG | 0.581194 | 5.1:+264357 | None:intergenic |
| TCTTCTTCCACCATAGGCAA+TGG | 0.581759 | 5.1:+263355 | None:intergenic |
| ATAAGGCTAGTACTCTTGCA+GGG | 0.582318 | 5.1:-264489 | MS.gene92363:CDS |
| CAGCGGTGATGAGAGCTTCA+GGG | 0.582358 | 5.1:+264935 | None:intergenic |
| ACAAGAATAAGTAACAAAGC+AGG | 0.582392 | 5.1:+263589 | None:intergenic |
| CCAAAATCAGACTAAGGCGA+TGG | 0.584574 | 5.1:-264585 | MS.gene92363:CDS |
| AAGGTTAGACATGGCAGCGG+CGG | 0.595108 | 5.1:+264273 | None:intergenic |
| AGAACATAGCCACCGTTGTG+AGG | 0.595254 | 5.1:+264895 | None:intergenic |
| ACTGGTTGGCCATGAAAACA+AGG | 0.596054 | 5.1:-263401 | MS.gene92363:CDS |
| GAAGTCGGGATGTTGATTGG+TGG | 0.598630 | 5.1:-264322 | MS.gene92363:CDS |
| TCCGTTCCAAACATTTGGTG+CGG | 0.599230 | 5.1:-263629 | MS.gene92363:CDS |
| TTTAATAACGTCAATTGGCG+TGG | 0.601030 | 5.1:-264550 | MS.gene92363:CDS |
| AAATTGGTTACTGTTTGAAG+CGG | 0.601450 | 5.1:-263470 | MS.gene92363:CDS |
| GAATTGTCTTTAATGCAAAG+TGG | 0.601773 | 5.1:-263334 | MS.gene92363:CDS |
| TCTGTAATTCAAATAAGTAA+GGG | 0.601990 | 5.1:+264693 | None:intergenic |
| ATTGAATGCCAACCATTGGA+AGG | 0.602235 | 5.1:+263433 | None:intergenic |
| CTTACTTATTTGAATTACAG+AGG | 0.605159 | 5.1:-264691 | MS.gene92363:CDS |
| GCCGCACCAAATGTTTGGAA+CGG | 0.607396 | 5.1:+263628 | None:intergenic |
| GAGCTCACCATTGCCTATGG+TGG | 0.608182 | 5.1:-263362 | MS.gene92363:CDS |
| GATTCTGTTAGAACCGGCGG+TGG | 0.609699 | 5.1:-265009 | MS.gene92363:CDS |
| GCACCTGTTCCTGCTAGCAA+CGG | 0.624624 | 5.1:+264388 | None:intergenic |
| TCAGGGACACTCCAAATGAG+AGG | 0.625273 | 5.1:+264952 | None:intergenic |
| AAGCCGAGTAAGGATAGAAG+AGG | 0.626094 | 5.1:+264985 | None:intergenic |
| TCCAAGGTTAGACATGGCAG+CGG | 0.631162 | 5.1:+264270 | None:intergenic |
| CAGGGACACTCCAAATGAGA+GGG | 0.634528 | 5.1:+264953 | None:intergenic |
| CAACTGTCATCACCTTCCAA+TGG | 0.639749 | 5.1:-263445 | MS.gene92363:CDS |
| GGATAGAAGAGGACCACCGC+CGG | 0.641963 | 5.1:+264996 | None:intergenic |
| GAGGATTCTGTTAGAACCGG+CGG | 0.644182 | 5.1:-265012 | MS.gene92363:CDS |
| TAGAAGATTAGAGCAATCAG+AGG | 0.645302 | 5.1:+265063 | None:intergenic |
| ATCTTCTACGAAGTCTCCGG+CGG | 0.650130 | 5.1:-265048 | MS.gene92363:CDS |
| AGAATAAGTAACAAAGCAGG+AGG | 0.650240 | 5.1:+263592 | None:intergenic |
| GAAAGTAGTGGCGAGTTCAG+CGG | 0.650242 | 5.1:+264918 | None:intergenic |
| AAACAATCCAAGGTTAGACA+TGG | 0.651742 | 5.1:+264264 | None:intergenic |
| CAGGAATACGGGCTAGCATG+CGG | 0.658741 | 5.1:+264737 | None:intergenic |
| CCAAAAGGGACCAAAAGCAG+AGG | 0.661685 | 5.1:+264864 | None:intergenic |
| GCCACTACTTTCCCTCACAA+CGG | 0.683972 | 5.1:-264907 | MS.gene92363:CDS |
| ACCGTTGTGAGGGAAAGTAG+TGG | 0.687593 | 5.1:+264906 | None:intergenic |
| TAAGGCTAGTACTCTTGCAG+GGG | 0.692679 | 5.1:-264488 | MS.gene92363:CDS |
| ACTACTTTCCCTCACAACGG+TGG | 0.702831 | 5.1:-264904 | MS.gene92363:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGATTGTATATAAGCAATA+TGG | - | chr5.1:264405-264424 | MS.gene92363:CDS | 20.0% |
| !! | TATTAATTGCTTGAACAAAA+AGG | - | chr5.1:264549-264568 | MS.gene92363:CDS | 20.0% |
| !! | TCTGTAATTCAAATAAGTAA+GGG | + | chr5.1:263742-263761 | None:intergenic | 20.0% |
| !!! | GTTTTGGAATTTGAATTATT+GGG | - | chr5.1:263920-263939 | MS.gene92363:intron | 20.0% |
| !!! | TATCTGTTTTGAAAAATAGA+TGG | - | chr5.1:264429-264448 | MS.gene92363:CDS | 20.0% |
| !!! | TGTTTTGGAATTTGAATTAT+TGG | - | chr5.1:263919-263938 | MS.gene92363:intron | 20.0% |
| ! | AAAAAGAAAGATACCATACA+AGG | + | chr5.1:264377-264396 | None:intergenic | 25.0% |
| ! | AAAGGGTAAAAGTGAAAAAA+TGG | + | chr5.1:263802-263821 | None:intergenic | 25.0% |
| ! | AAGAACAAAGATAACAAGAA+AGG | + | chr5.1:263820-263839 | None:intergenic | 25.0% |
| ! | AAGTAATCAAGAAACAAAAC+AGG | + | chr5.1:263651-263670 | None:intergenic | 25.0% |
| ! | AGAACAAAGATAACAAGAAA+GGG | + | chr5.1:263819-263838 | None:intergenic | 25.0% |
| ! | ATTTGAACTTCATCCTTAAA+GGG | - | chr5.1:264455-264474 | MS.gene92363:CDS | 25.0% |
| ! | CTATAGCATATAAGAAATTG+AGG | + | chr5.1:264710-264729 | None:intergenic | 25.0% |
| ! | CTCAATTTCTTATATGCTAT+AGG | - | chr5.1:264708-264727 | MS.gene92363:CDS | 25.0% |
| ! | CTCTGTAATTCAAATAAGTA+AGG | + | chr5.1:263743-263762 | None:intergenic | 25.0% |
| ! | CTTACTTATTTGAATTACAG+AGG | - | chr5.1:263741-263760 | MS.gene92363:CDS | 25.0% |
| ! | GAATTTGAATTATTGGGATA+AGG | - | chr5.1:263926-263945 | MS.gene92363:intron | 25.0% |
| ! | GAGAATAAAATGCTAATAGT+CGG | + | chr5.1:264633-264652 | None:intergenic | 25.0% |
| ! | TTCAAGCCAAGAATAAAAAT+TGG | - | chr5.1:264946-264965 | MS.gene92363:CDS | 25.0% |
| !! | CAGTAACCAATTTTTATTCT+TGG | + | chr5.1:264955-264974 | None:intergenic | 25.0% |
| !! | GTTACTTCAATAACATGTTT+TGG | - | chr5.1:263904-263923 | MS.gene92363:intron | 25.0% |
| !!! | TGGATTTTAATAACGTCAAT+TGG | - | chr5.1:263877-263896 | MS.gene92363:intron | 25.0% |
| !!! | TTTAGTTTCATTTTCTACCT+AGG | + | chr5.1:264324-264343 | None:intergenic | 25.0% |
| AAACTTTCTAGGTCTAAGTA+TGG | - | chr5.1:264603-264622 | MS.gene92363:CDS | 30.0% | |
| AAATTGGTTACTGTTTGAAG+CGG | - | chr5.1:264962-264981 | MS.gene92363:CDS | 30.0% | |
| ACAAGAATAAGTAACAAAGC+AGG | + | chr5.1:264846-264865 | None:intergenic | 30.0% | |
| ATTTATCTTGTACCCTATCT+TGG | - | chr5.1:264923-264942 | MS.gene92363:CDS | 30.0% | |
| CTGAAAGGTCTATAAAGATT+TGG | + | chr5.1:264780-264799 | None:intergenic | 30.0% | |
| GAATTGTCTTTAATGCAAAG+TGG | - | chr5.1:265098-265117 | MS.gene92363:CDS | 30.0% | |
| GATTTGAACTTCATCCTTAA+AGG | - | chr5.1:264454-264473 | MS.gene92363:CDS | 30.0% | |
| TGTGGTACTATAAACTTTCT+AGG | - | chr5.1:264592-264611 | MS.gene92363:CDS | 30.0% | |
| TTTGAACTTCATCCTTAAAG+GGG | - | chr5.1:264456-264475 | MS.gene92363:CDS | 30.0% | |
| ! | ACTTATTCTTGTTATGTGTC+TGG | - | chr5.1:264854-264873 | MS.gene92363:CDS | 30.0% |
| !! | TTCAAGAAGGTTTTTGGAAA+TGG | - | chr5.1:263595-263614 | MS.gene92363:CDS | 30.0% |
| !!! | AGAGGTAATAAGGTTAGTTT+TGG | + | chr5.1:263354-263373 | None:intergenic | 30.0% |
| AAACAATCCAAGGTTAGACA+TGG | + | chr5.1:264171-264190 | None:intergenic | 35.0% | |
| AAAGATACCATACAAGGAGA+GGG | + | chr5.1:264371-264390 | None:intergenic | 35.0% | |
| ACAGTGATCTAACATTGATG+TGG | - | chr5.1:264574-264593 | MS.gene92363:CDS | 35.0% | |
| ACCACTCACTTAAGACTAAA+TGG | + | chr5.1:264505-264524 | None:intergenic | 35.0% | |
| AGAATAAGTAACAAAGCAGG+AGG | + | chr5.1:264843-264862 | None:intergenic | 35.0% | |
| ATCAATTGAATGCCAACCAT+TGG | + | chr5.1:265006-265025 | None:intergenic | 35.0% | |
| CATGCGGTTAAAAATAGGAA+AGG | + | chr5.1:263682-263701 | None:intergenic | 35.0% | |
| CTCACTTAAGACTAAATGGT+AGG | + | chr5.1:264501-264520 | None:intergenic | 35.0% | |
| TAGAAGATTAGAGCAATCAG+AGG | + | chr5.1:263372-263391 | None:intergenic | 35.0% | |
| TAGAGCAATCAGAGGTAATA+AGG | + | chr5.1:263364-263383 | None:intergenic | 35.0% | |
| TTGAGAACGTTCTTTGTAAG+TGG | - | chr5.1:264882-264901 | MS.gene92363:CDS | 35.0% | |
| TTTAATAACGTCAATTGGCG+TGG | - | chr5.1:263882-263901 | MS.gene92363:intron | 35.0% | |
| TTTCTGCTTCAAACAATCCA+AGG | + | chr5.1:264181-264200 | None:intergenic | 35.0% | |
| ! | AGCATTTTATTCTCTGCAAC+TGG | - | chr5.1:264639-264658 | MS.gene92363:CDS | 35.0% |
| ! | AGTGATGCTTTTCAACTTCT+TGG | - | chr5.1:264206-264225 | MS.gene92363:CDS | 35.0% |
| ! | GAAATGGTTTAGTGGTGTTA+TGG | - | chr5.1:263611-263630 | MS.gene92363:CDS | 35.0% |
| ! | GCATTCAATTGATTCAGAAC+TGG | - | chr5.1:265013-265032 | MS.gene92363:CDS | 35.0% |
| ! | TCAATTGATTCAGAACTGGT+TGG | - | chr5.1:265017-265036 | MS.gene92363:CDS | 35.0% |
| ! | TCTTCTTTTTCCCTCTCATT+TGG | - | chr5.1:263469-263488 | MS.gene92363:CDS | 35.0% |
| !! | ACCATTTAGTCTTAAGTGAG+TGG | - | chr5.1:264501-264520 | MS.gene92363:CDS | 35.0% |
| !! | ATGGTTATTTTGCTGAAGTC+GGG | - | chr5.1:264096-264115 | MS.gene92363:intron | 35.0% |
| !! | GATGGTTATTTTGCTGAAGT+CGG | - | chr5.1:264095-264114 | MS.gene92363:intron | 35.0% |
| !! | GGTTTTTGGAAATGGTTTAG+TGG | - | chr5.1:263603-263622 | MS.gene92363:CDS | 35.0% |
| !!! | GTTTCCCAAAGCACTTTTTT+GGG | - | chr5.1:263989-264008 | MS.gene92363:intron | 35.0% |
| !!! | TTTCCCAAAGCACTTTTTTG+GGG | - | chr5.1:263990-264009 | MS.gene92363:intron | 35.0% |
| ACAGAATCCTCAACTCCAAA+TGG | + | chr5.1:263411-263430 | None:intergenic | 40.0% | |
| ACCTTCTTGAAAACCCCAAA+AGG | + | chr5.1:263586-263605 | None:intergenic | 40.0% | |
| ACTTCTTGGAATGAGCAAGA+TGG | - | chr5.1:264220-264239 | MS.gene92363:CDS | 40.0% | |
| AGAGTTCCGTTCCAAACATT+TGG | - | chr5.1:264798-264817 | MS.gene92363:CDS | 40.0% | |
| ATAAGGCTAGTACTCTTGCA+GGG | - | chr5.1:263943-263962 | MS.gene92363:intron | 40.0% | |
| ATACCCTCTTTCTCTTTCCT+AGG | - | chr5.1:264304-264323 | MS.gene92363:CDS | 40.0% | |
| ATTGAATGCCAACCATTGGA+AGG | + | chr5.1:265002-265021 | None:intergenic | 40.0% | |
| CCTTCTTGAAAACCCCAAAA+GGG | + | chr5.1:263585-263604 | None:intergenic | 40.0% | |
| CTAATCTTCTACGAAGTCTC+CGG | - | chr5.1:263381-263400 | MS.gene92363:CDS | 40.0% | |
| CTACCTAGGAAAGAGAAAGA+GGG | + | chr5.1:264310-264329 | None:intergenic | 40.0% | |
| CTGGAGTTATCTTCTTGTCA+TGG | - | chr5.1:264658-264677 | MS.gene92363:CDS | 40.0% | |
| CTGTTCCCAAAATCAGACTA+AGG | - | chr5.1:263841-263860 | MS.gene92363:intron | 40.0% | |
| CTTCTTGGAATGAGCAAGAT+GGG | - | chr5.1:264221-264240 | MS.gene92363:CDS | 40.0% | |
| GAAAAAGAAGAAGCCGAGTA+AGG | + | chr5.1:263460-263479 | None:intergenic | 40.0% | |
| GAAAGATACCATACAAGGAG+AGG | + | chr5.1:264372-264391 | None:intergenic | 40.0% | |
| GACAATTCTTCTTCCACCAT+AGG | + | chr5.1:265086-265105 | None:intergenic | 40.0% | |
| GATGAGCTTTCAGCAAATAC+TGG | - | chr5.1:264680-264699 | MS.gene92363:CDS | 40.0% | |
| GCTAGCATGCGGTTAAAAAT+AGG | + | chr5.1:263687-263706 | None:intergenic | 40.0% | |
| GTTGAGGATTCTGTTAGAAC+CGG | - | chr5.1:263417-263436 | MS.gene92363:CDS | 40.0% | |
| TACAGAGGTCTTCACATTGT+TGG | - | chr5.1:263756-263775 | MS.gene92363:CDS | 40.0% | |
| TATTTGATTCCGTTGCTAGC+AGG | - | chr5.1:264035-264054 | MS.gene92363:intron | 40.0% | |
| TCCACTACAAATCCCCTTTA+AGG | + | chr5.1:264471-264490 | None:intergenic | 40.0% | |
| TCCTTAAAGGGGATTTGTAG+TGG | - | chr5.1:264467-264486 | MS.gene92363:CDS | 40.0% | |
| TCTACCTAGGAAAGAGAAAG+AGG | + | chr5.1:264311-264330 | None:intergenic | 40.0% | |
| TTCCAGCTGTATTCTCATCA+AGG | - | chr5.1:264249-264268 | MS.gene92363:CDS | 40.0% | |
| ! | CATCGCCTTAGTCTGATTTT+GGG | + | chr5.1:263849-263868 | None:intergenic | 40.0% |
| ! | CTTTGGATATCCTCTGCTTT+TGG | - | chr5.1:263558-263577 | MS.gene92363:CDS | 40.0% |
| ! | TCTTGGCTTGAACCAAGATA+GGG | + | chr5.1:264938-264957 | None:intergenic | 40.0% |
| ! | TTCTTGGCTTGAACCAAGAT+AGG | + | chr5.1:264939-264958 | None:intergenic | 40.0% |
| !! | ATCCCCCAAAAAAGTGCTTT+GGG | + | chr5.1:263996-264015 | None:intergenic | 40.0% |
| !! | GGATGTTGATTGGTGGTTTT+TGG | - | chr5.1:264117-264136 | MS.gene92363:intron | 40.0% |
| !! | GGGGTTTTCAAGAAGGTTTT+TGG | - | chr5.1:263589-263608 | MS.gene92363:CDS | 40.0% |
| !!! | ACTTTTTTGGGGGATGCTTT+TGG | - | chr5.1:264001-264020 | MS.gene92363:intron | 40.0% |
| !!! | CGTTTCCCAAAGCACTTTTT+TGG | - | chr5.1:263988-264007 | MS.gene92363:intron | 40.0% |
| !!! | GCTTTGGGAAACGTTTTACT+TGG | + | chr5.1:263981-264000 | None:intergenic | 40.0% |
| !!! | GTGGTTTTTGGCTTAAACTG+TGG | - | chr5.1:264129-264148 | MS.gene92363:intron | 40.0% |
| !!! | TTCCCAAAGCACTTTTTTGG+GGG | - | chr5.1:263991-264010 | MS.gene92363:intron | 40.0% |
| AAGCCGAGTAAGGATAGAAG+AGG | + | chr5.1:263450-263469 | None:intergenic | 45.0% | |
| ACAACGGTGGCTATGTTCTT+TGG | - | chr5.1:263541-263560 | MS.gene92363:CDS | 45.0% | |
| AGTGGAGCAGTAGTAATCGT+TGG | - | chr5.1:264900-264919 | MS.gene92363:CDS | 45.0% | |
| CAACTGTCATCACCTTCCAA+TGG | - | chr5.1:264987-265006 | MS.gene92363:CDS | 45.0% | |
| CCAAAATCAGACTAAGGCGA+TGG | - | chr5.1:263847-263866 | MS.gene92363:intron | 45.0% | |
| GACCTTGATGAGAATACAGC+TGG | + | chr5.1:264254-264273 | None:intergenic | 45.0% | |
| GATAAGGCTAGTACTCTTGC+AGG | - | chr5.1:263942-263961 | MS.gene92363:intron | 45.0% | |
| GGTCCTCTTCTATCCTTACT+CGG | - | chr5.1:263444-263463 | MS.gene92363:CDS | 45.0% | |
| TAACCATCAGCCCATTCAGT+TGG | + | chr5.1:264083-264102 | None:intergenic | 45.0% | |
| TAAGGCTAGTACTCTTGCAG+GGG | - | chr5.1:263944-263963 | MS.gene92363:intron | 45.0% | |
| TATGAGCTCACCATTGCCTA+TGG | - | chr5.1:265067-265086 | MS.gene92363:CDS | 45.0% | |
| TCCCTAAGAGAGCAGGAATA+CGG | + | chr5.1:263710-263729 | None:intergenic | 45.0% | |
| TCTTCTTCCACCATAGGCAA+TGG | + | chr5.1:265080-265099 | None:intergenic | 45.0% | |
| TGTCATCACCTTCCAATGGT+TGG | - | chr5.1:264991-265010 | MS.gene92363:CDS | 45.0% | |
| TGTGATACCCTCTCCTTGTA+TGG | - | chr5.1:264361-264380 | MS.gene92363:CDS | 45.0% | |
| ! | ACTGGTTGGCCATGAAAACA+AGG | - | chr5.1:265031-265050 | MS.gene92363:CDS | 45.0% |
| ! | CCATCGCCTTAGTCTGATTT+TGG | + | chr5.1:263850-263869 | None:intergenic | 45.0% |
| ! | GTTTGGAACGGAACTCTGAA+AGG | + | chr5.1:264795-264814 | None:intergenic | 45.0% |
| ! | TCCGTTCCAAACATTTGGTG+CGG | - | chr5.1:264803-264822 | MS.gene92363:CDS | 45.0% |
| !! | ACTAAGGCGATGGTTTGTTG+TGG | - | chr5.1:263857-263876 | MS.gene92363:intron | 45.0% |
| !! | CATCCCCCAAAAAAGTGCTT+TGG | + | chr5.1:263997-264016 | None:intergenic | 45.0% |
| !! | CTCTGCTTTTGGTCCCTTTT+GGG | - | chr5.1:263569-263588 | MS.gene92363:CDS | 45.0% |
| !! | TCTGCTTTTGGTCCCTTTTG+GGG | - | chr5.1:263570-263589 | MS.gene92363:CDS | 45.0% |
| !! | TTTTTGGGGGATGCTTTTGG+TGG | - | chr5.1:264004-264023 | MS.gene92363:intron | 45.0% |
| !!! | CCCTTTTGGGGTTTTCAAGA+AGG | - | chr5.1:263582-263601 | MS.gene92363:CDS | 45.0% |
| !!! | GCTCTGTGTCCTTGTTTTCA+TGG | + | chr5.1:265043-265062 | None:intergenic | 45.0% |
| AACGTGATCCCTAAGAGAGC+AGG | + | chr5.1:263717-263736 | None:intergenic | 50.0% | |
| ACCGTTGTGAGGGAAAGTAG+TGG | + | chr5.1:263529-263548 | None:intergenic | 50.0% | |
| ACTACTTTCCCTCACAACGG+TGG | - | chr5.1:263528-263547 | MS.gene92363:CDS | 50.0% | |
| AGAACATAGCCACCGTTGTG+AGG | + | chr5.1:263540-263559 | None:intergenic | 50.0% | |
| AGCAGGAGGCAAACAAAGCA+TGG | + | chr5.1:264829-264848 | None:intergenic | 50.0% | |
| ATCAGCCCATTCAGTTGGAG+GGG | + | chr5.1:264078-264097 | None:intergenic | 50.0% | |
| ATCTTCTACGAAGTCTCCGG+CGG | - | chr5.1:263384-263403 | MS.gene92363:CDS | 50.0% | |
| ATTCCGTTGCTAGCAGGAAC+AGG | - | chr5.1:264041-264060 | MS.gene92363:intron | 50.0% | |
| CAGGGACACTCCAAATGAGA+GGG | + | chr5.1:263482-263501 | None:intergenic | 50.0% | |
| CATCAGCCCATTCAGTTGGA+GGG | + | chr5.1:264079-264098 | None:intergenic | 50.0% | |
| CCAAAAGGGACCAAAAGCAG+AGG | + | chr5.1:263571-263590 | None:intergenic | 50.0% | |
| CCCGTATTCCTGCTCTCTTA+GGG | - | chr5.1:263706-263725 | MS.gene92363:CDS | 50.0% | |
| CCCTAAGAGAGCAGGAATAC+GGG | + | chr5.1:263709-263728 | None:intergenic | 50.0% | |
| GAAAGTAGTGGCGAGTTCAG+CGG | + | chr5.1:263517-263536 | None:intergenic | 50.0% | |
| GAACATAGCCACCGTTGTGA+GGG | + | chr5.1:263539-263558 | None:intergenic | 50.0% | |
| GAGGATTCTGTTAGAACCGG+CGG | - | chr5.1:263420-263439 | MS.gene92363:CDS | 50.0% | |
| GAGTTCCCCTCCAACTGAAT+GGG | - | chr5.1:264070-264089 | MS.gene92363:intron | 50.0% | |
| GCCACTACTTTCCCTCACAA+CGG | - | chr5.1:263525-263544 | MS.gene92363:CDS | 50.0% | |
| GCCGCACCAAATGTTTGGAA+CGG | + | chr5.1:264807-264826 | None:intergenic | 50.0% | |
| GCTGAAGTCGGGATGTTGAT+TGG | - | chr5.1:264107-264126 | MS.gene92363:intron | 50.0% | |
| TCAGGGACACTCCAAATGAG+AGG | + | chr5.1:263483-263502 | None:intergenic | 50.0% | |
| TCCAAGGTTAGACATGGCAG+CGG | + | chr5.1:264165-264184 | None:intergenic | 50.0% | |
| TGAGTTCCCCTCCAACTGAA+TGG | - | chr5.1:264069-264088 | MS.gene92363:intron | 50.0% | |
| ! | GAAGTCGGGATGTTGATTGG+TGG | - | chr5.1:264110-264129 | MS.gene92363:intron | 50.0% |
| !! | CCTCTGCTTTTGGTCCCTTT+TGG | - | chr5.1:263568-263587 | MS.gene92363:CDS | 50.0% |
| AAGGTTAGACATGGCAGCGG+CGG | + | chr5.1:264162-264181 | None:intergenic | 55.0% | |
| CAGCGGTGATGAGAGCTTCA+GGG | + | chr5.1:263500-263519 | None:intergenic | 55.0% | |
| CCATCAGCCCATTCAGTTGG+AGG | + | chr5.1:264080-264099 | None:intergenic | 55.0% | |
| CTCAACTCCAAATGGACCGC+CGG | + | chr5.1:263403-263422 | None:intergenic | 55.0% | |
| GAGCTCACCATTGCCTATGG+TGG | - | chr5.1:265070-265089 | MS.gene92363:CDS | 55.0% | |
| GATTCTGTTAGAACCGGCGG+TGG | - | chr5.1:263423-263442 | MS.gene92363:CDS | 55.0% | |
| GCACCTGTTCCTGCTAGCAA+CGG | + | chr5.1:264047-264066 | None:intergenic | 55.0% | |
| GCATGGCCGCACCAAATGTT+TGG | + | chr5.1:264812-264831 | None:intergenic | 55.0% | |
| GCCCGTATTCCTGCTCTCTT+AGG | - | chr5.1:263705-263724 | MS.gene92363:CDS | 55.0% | |
| TCAGCGGTGATGAGAGCTTC+AGG | + | chr5.1:263501-263520 | None:intergenic | 55.0% | |
| !! | CAGGAATACGGGCTAGCATG+CGG | + | chr5.1:263698-263717 | None:intergenic | 55.0% |
| !! | CCTCCAACTGAATGGGCTGA+TGG | - | chr5.1:264077-264096 | MS.gene92363:intron | 55.0% |
| GAAGTCTCCGGCGGTCCATT+TGG | - | chr5.1:263393-263412 | MS.gene92363:CDS | 60.0% | |
| GCCGCTGCCATGTCTAACCT+TGG | - | chr5.1:264161-264180 | MS.gene92363:intron | 60.0% | |
| GGATAGAAGAGGACCACCGC+CGG | + | chr5.1:263439-263458 | None:intergenic | 60.0% | |
| GGCTAGTACTCTTGCAGGGG+AGG | - | chr5.1:263947-263966 | MS.gene92363:intron | 60.0% | |
| ! | CGGCGGTCCATTTGGAGTTG+AGG | - | chr5.1:263401-263420 | MS.gene92363:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 263318 | 265136 | 263318 | ID=MS.gene92363 |
| chr5.1 | mRNA | 263318 | 265136 | 263318 | ID=MS.gene92363.t1;Parent=MS.gene92363 |
| chr5.1 | exon | 264184 | 265136 | 264184 | ID=MS.gene92363.t1.exon1;Parent=MS.gene92363.t1 |
| chr5.1 | CDS | 264184 | 265136 | 264184 | ID=cds.MS.gene92363.t1;Parent=MS.gene92363.t1 |
| chr5.1 | exon | 263318 | 263840 | 263318 | ID=MS.gene92363.t1.exon2;Parent=MS.gene92363.t1 |
| chr5.1 | CDS | 263318 | 263840 | 263318 | ID=cds.MS.gene92363.t1;Parent=MS.gene92363.t1 |
| Gene Sequence |
| Protein sequence |
