Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92578.t1 | XP_013454909.1 | 88.6 | 1056 | 50 | 7 | 1 | 987 | 1 | 1055 | 0.00E+00 | 1795 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92578.t1 | A0A072UH12 | 88.6 | 1056 | 50 | 7 | 1 | 987 | 1 | 1055 | 0.0e+00 | 1795.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050297 | MS.gene92578 | 0.822853 | 1.90E-53 | -1.69E-46 |
| MS.gene053171 | MS.gene92578 | 0.819504 | 1.12E-52 | -1.69E-46 |
| MS.gene055764 | MS.gene92578 | 0.804606 | 1.99E-49 | -1.69E-46 |
| MS.gene056169 | MS.gene92578 | 0.821632 | 3.64E-53 | -1.69E-46 |
| MS.gene057004 | MS.gene92578 | 0.814081 | 1.85E-51 | -1.69E-46 |
| MS.gene058197 | MS.gene92578 | 0.803625 | 3.19E-49 | -1.69E-46 |
| MS.gene059300 | MS.gene92578 | 0.841371 | 4.95E-58 | -1.69E-46 |
| MS.gene060283 | MS.gene92578 | 0.804783 | 1.83E-49 | -1.69E-46 |
| MS.gene06057 | MS.gene92578 | 0.820806 | 5.65E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92578.t1 | MTR_4g019490 | 86.458 | 1056 | 73 | 9 | 1 | 987 | 1 | 1055 | 0.0 | 1738 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92578.t1 | AT3G56870 | 36.293 | 259 | 123 | 5 | 742 | 979 | 449 | 686 | 3.24e-36 | 147 |
| MS.gene92578.t1 | AT3G56870 | 36.293 | 259 | 123 | 5 | 742 | 979 | 449 | 686 | 3.24e-36 | 147 |
Find 216 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATAATATCTTCACCTTTC+TGG | 0.145004 | 4.2:-82773761 | None:intergenic |
| CTGGTTGACAATAACCTTTC+AGG | 0.180532 | 4.2:-82773742 | None:intergenic |
| CCATTGAAACAATCACTTTC+AGG | 0.184542 | 4.2:-82772185 | None:intergenic |
| GTCCTTCATGCACTTCTTCT+TGG | 0.205534 | 4.2:-82772042 | None:intergenic |
| AATTTGCTTGAGTGTTAAAA+TGG | 0.242009 | 4.2:-82771835 | None:intergenic |
| CAACCGTTTCTGTAAAATAA+TGG | 0.260670 | 4.2:+82775391 | MS.gene92578:CDS |
| GATTGCTTCGCGTCGTATTC+AGG | 0.264672 | 4.2:-82773619 | None:intergenic |
| TAGAAGTGGTTCCAATCTTC+AGG | 0.268920 | 4.2:+82774546 | MS.gene92578:CDS |
| GATTGCTTCTCCTCGTATTC+AGG | 0.275509 | 4.2:-82773382 | None:intergenic |
| GAACCACTTCTAGAAGTCTT+TGG | 0.283608 | 4.2:-82774535 | None:intergenic |
| TTCTCGTTCAGCAACTCATC+TGG | 0.283858 | 4.2:+82774591 | MS.gene92578:CDS |
| TACAGATGGGGCTGAGGTTC+AGG | 0.286950 | 4.2:+82773525 | MS.gene92578:CDS |
| GAATTCAATGAAGGAAATTA+TGG | 0.314322 | 4.2:+82774714 | MS.gene92578:CDS |
| GACGGTGAAGCCATCTGATA+TGG | 0.327031 | 4.2:+82773042 | MS.gene92578:CDS |
| ACTCAATCCTGATGGGTATC+TGG | 0.335210 | 4.2:+82773339 | MS.gene92578:CDS |
| TATCCTCTCACCATCATATA+AGG | 0.338463 | 4.2:-82773650 | None:intergenic |
| TCTTTATCACTAGCCACTTC+AGG | 0.338632 | 4.2:-82773196 | None:intergenic |
| GCCGCCCACGAGATACATTA+AGG | 0.344571 | 4.2:-82771602 | None:intergenic |
| GTCTTCTTTACTTTCTCTAC+TGG | 0.344879 | 4.2:-82772762 | None:intergenic |
| CACCAGAGGGCGAGAACTCT+TGG | 0.354337 | 4.2:-82772484 | None:intergenic |
| AAATCATGATTAGCCACTTT+AGG | 0.356101 | 4.2:-82773451 | None:intergenic |
| AGGTCTTCAAATTCAATTGC+AGG | 0.365169 | 4.2:-82773118 | None:intergenic |
| ATCTCTTCTGATTGGTCAAC+TGG | 0.368468 | 4.2:-82772092 | None:intergenic |
| TAAAGTGGCTAATCATGATT+TGG | 0.369451 | 4.2:+82773453 | MS.gene92578:CDS |
| TGGTCAACTGGCACAATCTC+CGG | 0.386627 | 4.2:-82772080 | None:intergenic |
| CAATAAAATTTAACTTCAAC+AGG | 0.388109 | 4.2:-82772521 | None:intergenic |
| CAATCAAATTTAACTTCAAC+AGG | 0.389678 | 4.2:-82772701 | None:intergenic |
| ATTCCCTTTCACTTAGATTC+TGG | 0.394907 | 4.2:-82775799 | None:intergenic |
| CACAAGATGTAGTGCGTAAA+GGG | 0.398113 | 4.2:+82775698 | MS.gene92578:CDS |
| CAACCTCATCATCCATGTTA+TGG | 0.404621 | 4.2:-82771794 | None:intergenic |
| ACGAGAAGAATTACGAATCT+TGG | 0.404681 | 4.2:-82774575 | None:intergenic |
| CAATCAAATTTAACTTCAAC+AGG | 0.407071 | 4.2:-82772341 | None:intergenic |
| CCTGAAAGTGATTGTTTCAA+TGG | 0.407091 | 4.2:+82772185 | MS.gene92578:CDS |
| CTTGGAAGCGCCCTGAAGAT+TGG | 0.409102 | 4.2:-82774557 | None:intergenic |
| GGTCAACTAGCGCAATCTCT+TGG | 0.410909 | 4.2:-82772619 | None:intergenic |
| GGCCATTTCACCATCTTCTC+AGG | 0.413736 | 4.2:+82773844 | MS.gene92578:intron |
| CAATCTCTTGGGAGGACATT+GGG | 0.416373 | 4.2:-82772787 | None:intergenic |
| CAATCTCCGGGAAGGACATT+GGG | 0.416604 | 4.2:-82772067 | None:intergenic |
| CTGAGAGTCTCCATGAAATC+AGG | 0.417726 | 4.2:-82771984 | None:intergenic |
| AGAAGATGATCCTGATTTCA+TGG | 0.417890 | 4.2:+82771974 | MS.gene92578:CDS |
| ATTGAGTCCATGTTCGTTAG+TGG | 0.429000 | 4.2:-82773323 | None:intergenic |
| CGTCAACTAGCACAATCTCT+TGG | 0.430970 | 4.2:-82772799 | None:intergenic |
| TCTCGTTCAGCAACTCATCT+GGG | 0.432277 | 4.2:+82774592 | MS.gene92578:CDS |
| GTGAACTAGCACAGCCTCTT+GGG | 0.433261 | 4.2:-82772258 | None:intergenic |
| TTCCTGAGAAGATGGTGAAA+TGG | 0.433301 | 4.2:-82773846 | None:intergenic |
| TGAAAACTGAACCTGATGTT+TGG | 0.434144 | 4.2:+82771739 | MS.gene92578:CDS |
| CATTATATCAAAACTTTCAA+AGG | 0.436866 | 4.2:+82771561 | MS.gene92578:CDS |
| ATGAGTTCCCACCGTCTAGC+AGG | 0.438424 | 4.2:+82772846 | MS.gene92578:CDS |
| TGGTCAACTAGCACAATCTC+TGG | 0.441642 | 4.2:-82772440 | None:intergenic |
| GTGGAAAGCTGTGCCAGGTT+AGG | 0.441663 | 4.2:+82775749 | MS.gene92578:CDS |
| GGCCAAGAGTTCTCGCCCTC+TGG | 0.441838 | 4.2:+82772482 | MS.gene92578:CDS |
| GGACCACCCAATGTCCTTCC+CGG | 0.443070 | 4.2:+82772061 | MS.gene92578:CDS |
| TCTTTAGTTTCCTTATATGA+TGG | 0.444730 | 4.2:+82773640 | MS.gene92578:CDS |
| GGTGAACTAGCACAGCCTCT+TGG | 0.445129 | 4.2:-82772259 | None:intergenic |
| TCTCGACCGGAACAGTCATC+TGG | 0.447529 | 4.2:-82772389 | None:intergenic |
| AGATCTTGACTCTGTAGGTC+TGG | 0.447645 | 4.2:+82773216 | MS.gene92578:CDS |
| ATGTGGTCTTCTGGGGATGA+TGG | 0.450680 | 4.2:-82771936 | None:intergenic |
| TCATCACATGCCCAAACATC+AGG | 0.456881 | 4.2:-82771750 | None:intergenic |
| TCTCTACTGGAACAGTCATC+TGG | 0.458490 | 4.2:-82772749 | None:intergenic |
| TCTCTACCGGAACAGTCATC+TGG | 0.463906 | 4.2:-82772569 | None:intergenic |
| ACAATCTCCGGGAAGGACAT+TGG | 0.464832 | 4.2:-82772068 | None:intergenic |
| GTCTTCTTTACTTTCTCTAC+CGG | 0.465887 | 4.2:-82772222 | None:intergenic |
| GTCTTCTTTACTTTCTCTAC+CGG | 0.465887 | 4.2:-82772582 | None:intergenic |
| CAATCTCTTGGGAAGACATT+GGG | 0.467063 | 4.2:-82772607 | None:intergenic |
| GTCAACTAGCGCAATCTCTT+GGG | 0.468261 | 4.2:-82772618 | None:intergenic |
| CAATCTCTGGGGAAGACATT+GGG | 0.468305 | 4.2:-82772427 | None:intergenic |
| TTTCAAAGGTGGGTTTGTTA+CGG | 0.471550 | 4.2:+82771575 | MS.gene92578:CDS |
| GCCACTTCAGGTGGTGAGAC+TGG | 0.473358 | 4.2:-82773184 | None:intergenic |
| CATCTAGTATCTCTTCTGAT+TGG | 0.478606 | 4.2:-82772280 | None:intergenic |
| CCCTCTAGTGGAGATTCAGC+TGG | 0.480061 | 4.2:+82772137 | MS.gene92578:CDS |
| GATGGGCCAGATGACTGTTC+CGG | 0.482506 | 4.2:+82772563 | MS.gene92578:CDS |
| CGTCTAGTATCTCTTCTGAT+TGG | 0.482857 | 4.2:-82772460 | None:intergenic |
| GAAAACTGAACCTGATGTTT+GGG | 0.483915 | 4.2:+82771740 | MS.gene92578:CDS |
| CCTCAATCCGGATGGATGTC+CGG | 0.485013 | 4.2:+82773576 | MS.gene92578:CDS |
| CAGCCTCTTGGGAAGACATT+GGG | 0.486265 | 4.2:-82772247 | None:intergenic |
| AATGAGCCAGATGACTGTTC+TGG | 0.486329 | 4.2:+82772923 | MS.gene92578:CDS |
| GATGGGCCAGATGACTGTTC+CGG | 0.486994 | 4.2:+82772383 | MS.gene92578:CDS |
| CCTGAAAATGATTGTTTCGA+TGG | 0.488342 | 4.2:+82772365 | MS.gene92578:CDS |
| CCTTTACGCACTACATCTTG+TGG | 0.489160 | 4.2:-82775697 | None:intergenic |
| GTCAACTAGCACAATCTCTT+GGG | 0.491340 | 4.2:-82772798 | None:intergenic |
| AGAATGAATTAAATAACAAA+TGG | 0.493400 | 4.2:+82772993 | MS.gene92578:CDS |
| CCTGAAAATGATTGTTCTGA+TGG | 0.494292 | 4.2:+82772545 | MS.gene92578:CDS |
| TATATCAAAACTTTCAAAGG+TGG | 0.497940 | 4.2:+82771564 | MS.gene92578:CDS |
| ATATCAAAACTTTCAAAGGT+GGG | 0.498052 | 4.2:+82771565 | MS.gene92578:CDS |
| ACCAATGTCATCATCACCTT+CGG | 0.498819 | 4.2:-82773413 | None:intergenic |
| TCCATGTTCGTTAGTGGCGC+AGG | 0.500439 | 4.2:-82773317 | None:intergenic |
| AGACGAACCGGACATCCATC+CGG | 0.502544 | 4.2:-82773583 | None:intergenic |
| ACTAGTCTCACCACCTAAAG+TGG | 0.502741 | 4.2:+82773438 | MS.gene92578:CDS |
| GTCTTCTTTACTTTCTCGAC+CGG | 0.505077 | 4.2:-82772402 | None:intergenic |
| GGTCAACTGGCACAATCTCC+GGG | 0.509977 | 4.2:-82772079 | None:intergenic |
| GATGACTACAACGCTCCATT+CGG | 0.510540 | 4.2:-82771536 | None:intergenic |
| CGTCTAGTATCTCTTCTGAT+TGG | 0.517639 | 4.2:-82772100 | None:intergenic |
| CGTCTAGTATCTCTTCTGAT+TGG | 0.517639 | 4.2:-82772640 | None:intergenic |
| ACAATCTCTGGGGAAGACAT+TGG | 0.518090 | 4.2:-82772428 | None:intergenic |
| CTGAAAGTGATTGTTTCAAT+GGG | 0.519366 | 4.2:+82772186 | MS.gene92578:CDS |
| GAATCGTCAGAGAGACGAAC+CGG | 0.520134 | 4.2:-82773595 | None:intergenic |
| AATGGGCAAGATGACTGTTC+CGG | 0.521162 | 4.2:+82772203 | MS.gene92578:CDS |
| AAAAGAGTTGAATTCAATGA+AGG | 0.523260 | 4.2:+82774705 | MS.gene92578:CDS |
| AAGATCATGCATTGATGTAA+TGG | 0.524697 | 4.2:+82771704 | MS.gene92578:CDS |
| TACTGAACAAGGCCTCAATC+CGG | 0.527531 | 4.2:+82773564 | MS.gene92578:CDS |
| CCACAAGATGTAGTGCGTAA+AGG | 0.528601 | 4.2:+82775697 | MS.gene92578:CDS |
| CAAGAGTTCTCGCCCTCTGG+TGG | 0.528739 | 4.2:+82772485 | MS.gene92578:CDS |
| GGTCAACTAGCACAATCTCT+GGG | 0.528926 | 4.2:-82772439 | None:intergenic |
| CAAGAGTTCTCGCCCACTAG+TGG | 0.533230 | 4.2:+82772665 | MS.gene92578:CDS |
| TCTCTACCAGAACAGTCATC+TGG | 0.533768 | 4.2:-82772929 | None:intergenic |
| ACAATCTCTTGGGAGGACAT+TGG | 0.535240 | 4.2:-82772788 | None:intergenic |
| CCGGACATCCATCCGGATTG+AGG | 0.536667 | 4.2:-82773576 | None:intergenic |
| GCATCACCATTCTTATCAGT+CGG | 0.537879 | 4.2:-82774448 | None:intergenic |
| AGCAGGTGGAAAGCTGTGCC+AGG | 0.538818 | 4.2:+82775744 | MS.gene92578:CDS |
| CAATCAGAAGAGATACTAGA+TGG | 0.539309 | 4.2:+82772281 | MS.gene92578:CDS |
| AGAAGTGGTTCCAATCTTCA+GGG | 0.542550 | 4.2:+82774547 | MS.gene92578:CDS |
| TACAACGCTCCATTCGGCCT+AGG | 0.543426 | 4.2:-82771530 | None:intergenic |
| TGAATCTACAGATGGGGCTG+AGG | 0.543709 | 4.2:+82773519 | MS.gene92578:CDS |
| CAAGAGTTCTCACCCTCTAG+TGG | 0.545884 | 4.2:+82772125 | MS.gene92578:CDS |
| ATTGAGGCCTTGTTCAGTAG+TGG | 0.547060 | 4.2:-82773560 | None:intergenic |
| CCTGAAAATGATTGTTCCGA+TGG | 0.549174 | 4.2:+82772725 | MS.gene92578:CDS |
| ATAGCATTCGCTGATGAAGC+AGG | 0.553372 | 4.2:+82775727 | MS.gene92578:CDS |
| GCAATCTCTTGGGAAGACAT+TGG | 0.553704 | 4.2:-82772608 | None:intergenic |
| TCCTGCGCCACTAACGAACA+TGG | 0.554632 | 4.2:+82773316 | MS.gene92578:CDS |
| TTGCAGGAAAGCTTGCAGAC+TGG | 0.556193 | 4.2:-82773102 | None:intergenic |
| CTCTGCTCCACTACTGAACA+AGG | 0.558590 | 4.2:+82773553 | MS.gene92578:CDS |
| AAGGTTATTGTCAACCAGAA+AGG | 0.559038 | 4.2:+82773747 | MS.gene92578:CDS |
| CATGTCAAACCTAGGCCGAA+TGG | 0.559584 | 4.2:+82771521 | None:intergenic |
| CGACAAACCAGATACCCATC+AGG | 0.561270 | 4.2:-82773346 | None:intergenic |
| TGCATTGATGTAATGGAGGA+AGG | 0.561397 | 4.2:+82771711 | MS.gene92578:CDS |
| ACAGCCTCTTGGGAAGACAT+TGG | 0.562222 | 4.2:-82772248 | None:intergenic |
| GTGGCTGTCTTTCATGTCAA+GGG | 0.562488 | 4.2:+82775364 | MS.gene92578:CDS |
| GCAGTTCTCGAGACAACACC+AGG | 0.562585 | 4.2:-82774478 | None:intergenic |
| ATAATAATTTCAGAATGCAA+AGG | 0.563309 | 4.2:+82774406 | MS.gene92578:intron |
| ACCAGTCTCACCACCTGAAG+TGG | 0.563854 | 4.2:+82773183 | MS.gene92578:CDS |
| GGAAAAGCTCTGCAAAGCCA+TGG | 0.566566 | 4.2:+82773865 | MS.gene92578:CDS |
| CATCCTCATAGAACCTAACC+TGG | 0.568751 | 4.2:-82775762 | None:intergenic |
| GATAAAGATCTTGACTCTGT+AGG | 0.568827 | 4.2:+82773211 | MS.gene92578:CDS |
| AGCAGCTGAATCTCCACTAG+TGG | 0.569696 | 4.2:-82772678 | None:intergenic |
| ACTGATATCAACGGTCTCCA+TGG | 0.569844 | 4.2:-82773882 | None:intergenic |
| TGAGAGGATACATGTTAAAG+AGG | 0.569994 | 4.2:+82773663 | MS.gene92578:CDS |
| GATGGCTTCACCGTCTGTAG+TGG | 0.570139 | 4.2:-82773034 | None:intergenic |
| GAACATGGACTCAATCCTGA+TGG | 0.572883 | 4.2:+82773331 | MS.gene92578:CDS |
| TTTCCTTATATGATGGTGAG+AGG | 0.575102 | 4.2:+82773647 | MS.gene92578:CDS |
| GAAATTCTCATGTCAAACCT+AGG | 0.575558 | 4.2:+82771513 | None:intergenic |
| ATTCCAAAGACTTCTAGAAG+TGG | 0.576866 | 4.2:+82774532 | MS.gene92578:CDS |
| CAAAGCTGCATGGTCCTGAA+AGG | 0.577844 | 4.2:+82773728 | MS.gene92578:CDS |
| AAGCAATCATTTGCTTCCGA+AGG | 0.579054 | 4.2:+82773397 | MS.gene92578:CDS |
| CTGAAAATGATTGTTTCGAT+GGG | 0.579755 | 4.2:+82772366 | MS.gene92578:CDS |
| CGCAGCTGAATCACCACTAG+AGG | 0.580370 | 4.2:-82772318 | None:intergenic |
| AGTAAAGATGAATCTACAGA+TGG | 0.580743 | 4.2:+82773511 | MS.gene92578:CDS |
| AAGCTGAAGAAGGTGCAAAA+CGG | 0.581103 | 4.2:+82775342 | MS.gene92578:CDS |
| TAGGTTCTATGAGGATGATG+AGG | 0.581252 | 4.2:+82775768 | MS.gene92578:CDS |
| GTAAAGATGAATCTACAGAT+GGG | 0.582960 | 4.2:+82773512 | MS.gene92578:CDS |
| GGTGGCTGTCTTTCATGTCA+AGG | 0.583391 | 4.2:+82775363 | MS.gene92578:CDS |
| GAAGTCCTTAATGTATCTCG+TGG | 0.587088 | 4.2:+82771597 | MS.gene92578:CDS |
| GTGCCAGGTTAGGTTCTATG+AGG | 0.588042 | 4.2:+82775759 | MS.gene92578:CDS |
| TCATGATTAGCCACTTTAGG+TGG | 0.588900 | 4.2:-82773448 | None:intergenic |
| ATAAGAATGGTGATGCAGAA+AGG | 0.589346 | 4.2:+82774455 | MS.gene92578:CDS |
| CAAGAGTTCTCACCCTCTAG+TGG | 0.590843 | 4.2:+82772305 | MS.gene92578:CDS |
| AATGCTACAAAAGCTGAAGA+AGG | 0.593465 | 4.2:+82775332 | MS.gene92578:CDS |
| GCCAGCTGAATCTCCACTAG+AGG | 0.593732 | 4.2:-82772138 | None:intergenic |
| CTCGTTCAGCAACTCATCTG+GGG | 0.595242 | 4.2:+82774593 | MS.gene92578:CDS |
| TGGAGGTGAAGAACTACTGT+CGG | 0.599354 | 4.2:-82775656 | None:intergenic |
| AGGAAGAGAAAACGCTCACA+AGG | 0.601064 | 4.2:+82771876 | MS.gene92578:CDS |
| TTAAAGATAGCTGCAAAGCA+AGG | 0.601950 | 4.2:+82771856 | MS.gene92578:CDS |
| GACCAAGAAGAAGTGCATGA+AGG | 0.602772 | 4.2:+82772040 | MS.gene92578:CDS |
| AATCCATAACATGGATGATG+AGG | 0.603932 | 4.2:+82771791 | MS.gene92578:CDS |
| CTGAATCCCTGCTAGACGGT+GGG | 0.604605 | 4.2:-82772853 | None:intergenic |
| ATAACAATATCCATATCAGA+TGG | 0.610792 | 4.2:-82773052 | None:intergenic |
| GGAACAGTCATCTGGCCCAT+CGG | 0.611163 | 4.2:-82772741 | None:intergenic |
| AATGGTGATGCAGAAAGGCC+TGG | 0.611927 | 4.2:+82774460 | MS.gene92578:CDS |
| GTTTGGGCATGTGATGATGA+TGG | 0.613837 | 4.2:+82771756 | MS.gene92578:CDS |
| GAACAAGGCCTCAATCCGGA+TGG | 0.614300 | 4.2:+82773568 | MS.gene92578:CDS |
| CTGAAAATGATTGTTCTGAT+GGG | 0.615652 | 4.2:+82772546 | MS.gene92578:CDS |
| ATCATCCCCAGAAGACCACA+TGG | 0.615755 | 4.2:+82771938 | MS.gene92578:CDS |
| ACAGAGCCGACTGATAAGAA+TGG | 0.616463 | 4.2:+82774442 | MS.gene92578:CDS |
| ACACAGAAATAACTCTAGAG+TGG | 0.616610 | 4.2:+82772963 | MS.gene92578:CDS |
| GCTGAATCCCTGCTAGACGG+TGG | 0.619939 | 4.2:-82772854 | None:intergenic |
| GTCTGATGATGATGATGCAA+AGG | 0.620203 | 4.2:+82771677 | MS.gene92578:CDS |
| GCAGCTGAATCTCCACCAGA+GGG | 0.621917 | 4.2:-82772497 | None:intergenic |
| AACTGGCACAATCTCCGGGA+AGG | 0.622918 | 4.2:-82772075 | None:intergenic |
| CCACCCAATGTCTTCCCAAG+AGG | 0.624646 | 4.2:+82772244 | MS.gene92578:CDS |
| GCAGCTGAATCTCCACTAGT+GGG | 0.625765 | 4.2:-82772677 | None:intergenic |
| CCTCTTGGGAAGACATTGGG+TGG | 0.626302 | 4.2:-82772244 | None:intergenic |
| TGTTCAGACAATCCATAACA+TGG | 0.627170 | 4.2:+82771782 | MS.gene92578:CDS |
| AACATGGACTCAATCCTGAT+GGG | 0.628467 | 4.2:+82773332 | MS.gene92578:CDS |
| ATCATGCATTGATGTAATGG+AGG | 0.629058 | 4.2:+82771707 | MS.gene92578:CDS |
| AACTAGCACAATCTCTTGGG+AGG | 0.629465 | 4.2:-82772795 | None:intergenic |
| TCTCTTGGGAAGACATTGGG+TGG | 0.630023 | 4.2:-82772604 | None:intergenic |
| TTATCACTAGCCACTTCAGG+TGG | 0.631593 | 4.2:-82773193 | None:intergenic |
| TCCTTAATGTATCTCGTGGG+CGG | 0.631765 | 4.2:+82771601 | MS.gene92578:CDS |
| CCAGCTGAATCTCCACTAGA+GGG | 0.631830 | 4.2:-82772137 | None:intergenic |
| TGAGTTCCCACCGTCTAGCA+GGG | 0.632117 | 4.2:+82772847 | MS.gene92578:CDS |
| GCAGCTGAATCCCTGCTAGA+CGG | 0.632908 | 4.2:-82772857 | None:intergenic |
| AGCAGCTGAATCTCCACCAG+AGG | 0.633262 | 4.2:-82772498 | None:intergenic |
| GTTTCTATGACTGATATCAA+CGG | 0.636051 | 4.2:-82773891 | None:intergenic |
| CATAACATGGATGATGAGGT+TGG | 0.640089 | 4.2:+82771795 | MS.gene92578:CDS |
| AGTGAAGATGAATATACAGC+TGG | 0.641533 | 4.2:+82773274 | MS.gene92578:CDS |
| CTGAAAATGATTGTTCCGAT+GGG | 0.641922 | 4.2:+82772726 | MS.gene92578:CDS |
| GCAGCTGAATCACCACTAGA+GGG | 0.651747 | 4.2:-82772317 | None:intergenic |
| AACATGGATGATGAGGTTGG+TGG | 0.652716 | 4.2:+82771798 | MS.gene92578:CDS |
| GAAGGTAGTTCAAAGCTGCA+TGG | 0.654248 | 4.2:+82773718 | MS.gene92578:CDS |
| AGGTTCTATGAGGATGATGA+GGG | 0.655810 | 4.2:+82775769 | MS.gene92578:CDS |
| TCTCTGGGGAAGACATTGGG+TGG | 0.656973 | 4.2:-82772424 | None:intergenic |
| TCTCTTGGGAGGACATTGGG+TGG | 0.657225 | 4.2:-82772784 | None:intergenic |
| AGATGATTCACCTGAATACG+AGG | 0.657273 | 4.2:+82773372 | MS.gene92578:CDS |
| ACTTCTTGTGATGAACATGA+AGG | 0.664199 | 4.2:+82773700 | MS.gene92578:CDS |
| CAATCAGAAGAGATACTAGA+CGG | 0.664717 | 4.2:+82772461 | MS.gene92578:CDS |
| TAAAGATGAATCTACAGATG+GGG | 0.666951 | 4.2:+82773513 | MS.gene92578:CDS |
| TTACGCACTACATCTTGTGG+AGG | 0.667666 | 4.2:-82775694 | None:intergenic |
| CAATCAGAAGAGATACTAGA+CGG | 0.667769 | 4.2:+82772101 | MS.gene92578:CDS |
| CAATCAGAAGAGATACTAGA+CGG | 0.667769 | 4.2:+82772641 | MS.gene92578:CDS |
| GCATTCGCTGATGAAGCAGG+TGG | 0.668767 | 4.2:+82775730 | MS.gene92578:CDS |
| GAATCTGAAGAGATACTAGA+CGG | 0.671927 | 4.2:+82772821 | MS.gene92578:CDS |
| TCTCCGGGAAGGACATTGGG+TGG | 0.674816 | 4.2:-82772064 | None:intergenic |
| AAGTCCTTAATGTATCTCGT+GGG | 0.675628 | 4.2:+82771598 | MS.gene92578:CDS |
| CTGAAGAAGGTGCAAAACGG+TGG | 0.680251 | 4.2:+82775345 | MS.gene92578:CDS |
| GTCAACTAGCACAATCTCTG+GGG | 0.706401 | 4.2:-82772438 | None:intergenic |
| TCCGAAGGTGATGATGACAT+TGG | 0.719898 | 4.2:+82773412 | MS.gene92578:CDS |
| TTTGAGATATAAAGTAAACG+AGG | 0.761951 | 4.2:+82774774 | MS.gene92578:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTATAAACAAATGTA+AGG | - | chr4.2:82774395-82774414 | None:intergenic | 10.0% |
| !! | AAATGTAAGGAAAATAATAT+AGG | - | chr4.2:82774382-82774401 | None:intergenic | 15.0% |
| !! | AAATTTATTGAGCAAAAATA+TGG | + | chr4.2:82774060-82774079 | MS.gene92578:intron | 15.0% |
| !! | AGAATGAATTAAATAACAAA+TGG | + | chr4.2:82772993-82773012 | MS.gene92578:CDS | 15.0% |
| !! | TTTATAGTTCAAAAAAATGT+GGG | - | chr4.2:82773988-82774007 | None:intergenic | 15.0% |
| !!! | AGATTTTTGAATTTAAGTTT+TGG | - | chr4.2:82771627-82771646 | None:intergenic | 15.0% |
| !!! | ATAAATTAGTCTTTTATTGA+AGG | + | chr4.2:82775001-82775020 | MS.gene92578:intron | 15.0% |
| !!! | TACAATTCAATGTTTTAAAT+AGG | - | chr4.2:82775196-82775215 | None:intergenic | 15.0% |
| !!! | TTGTAATTTTGATTTTTCAA+GGG | + | chr4.2:82775224-82775243 | MS.gene92578:intron | 15.0% |
| !! | AAAACCCAGATAATATATTA+TGG | - | chr4.2:82774230-82774249 | None:intergenic | 20.0% |
| !! | AAAACTATCATGATATGAAA+AGG | + | chr4.2:82774105-82774124 | MS.gene92578:intron | 20.0% |
| !! | AGATCAAATCAAAATACTTA+AGG | - | chr4.2:82773931-82773950 | None:intergenic | 20.0% |
| !! | ATAATAATTTCAGAATGCAA+AGG | + | chr4.2:82774406-82774425 | MS.gene92578:intron | 20.0% |
| !! | ATAATATAGGTTAAACATTG+AGG | - | chr4.2:82774369-82774388 | None:intergenic | 20.0% |
| !! | CATTATATCAAAACTTTCAA+AGG | + | chr4.2:82771561-82771580 | MS.gene92578:CDS | 20.0% |
| !! | GTTTATAGTTCAAAAAAATG+TGG | - | chr4.2:82773989-82774008 | None:intergenic | 20.0% |
| !! | TTCTCCATAATATATTATCT+GGG | + | chr4.2:82774223-82774242 | MS.gene92578:intron | 20.0% |
| !! | TTTCTCCATAATATATTATC+TGG | + | chr4.2:82774222-82774241 | MS.gene92578:intron | 20.0% |
| !!! | AATGTTTTAAATAGGAACAT+AGG | - | chr4.2:82775188-82775207 | None:intergenic | 20.0% |
| !!! | ATATATTATCTGGGTTTTAA+TGG | + | chr4.2:82774232-82774251 | MS.gene92578:intron | 20.0% |
| !!! | CAATAAAATTTAACTTCAAC+AGG | - | chr4.2:82772524-82772543 | None:intergenic | 20.0% |
| !!! | CTTGTAATTTTGATTTTTCA+AGG | + | chr4.2:82775223-82775242 | MS.gene92578:intron | 20.0% |
| !!! | GAATAACTCTATTTTTGTTA+GGG | - | chr4.2:82774516-82774535 | None:intergenic | 20.0% |
| !!! | TAACCATTATTTTACAGAAA+CGG | - | chr4.2:82775397-82775416 | None:intergenic | 20.0% |
| ! | AAAAGAGTTGAATTCAATGA+AGG | + | chr4.2:82774705-82774724 | MS.gene92578:CDS | 25.0% |
| ! | AAAATATGGTTGTATAGCTA+TGG | + | chr4.2:82774074-82774093 | MS.gene92578:intron | 25.0% |
| ! | AGAAAAAAATCCATAGATTG+AGG | - | chr4.2:82774276-82774295 | None:intergenic | 25.0% |
| ! | ATAACAATATCCATATCAGA+TGG | - | chr4.2:82773055-82773074 | None:intergenic | 25.0% |
| ! | ATATCAAAACTTTCAAAGGT+GGG | + | chr4.2:82771565-82771584 | MS.gene92578:CDS | 25.0% |
| ! | CAGTAGAAATCATTATGATT+TGG | + | chr4.2:82774838-82774857 | MS.gene92578:intron | 25.0% |
| ! | GAATTCAATGAAGGAAATTA+TGG | + | chr4.2:82774714-82774733 | MS.gene92578:CDS | 25.0% |
| ! | GATTGTCAAAAATATTATCG+AGG | - | chr4.2:82773141-82773160 | None:intergenic | 25.0% |
| ! | GTCAGAAAAAAAAGATTGTT+GGG | - | chr4.2:82774011-82774030 | None:intergenic | 25.0% |
| ! | TAGGTAATTCATTAGTAAGT+AGG | + | chr4.2:82774315-82774334 | MS.gene92578:intron | 25.0% |
| ! | TATATCAAAACTTTCAAAGG+TGG | + | chr4.2:82771564-82771583 | MS.gene92578:CDS | 25.0% |
| ! | TATGTAATCCATATAGTTTG+CGG | + | chr4.2:82774942-82774961 | MS.gene92578:intron | 25.0% |
| ! | TGTCAGAAAAAAAAGATTGT+TGG | - | chr4.2:82774012-82774031 | None:intergenic | 25.0% |
| !! | AATTTGCTTGAGTGTTAAAA+TGG | - | chr4.2:82771838-82771857 | None:intergenic | 25.0% |
| !! | CAATAAATTTTTCGTCTATC+TGG | - | chr4.2:82774050-82774069 | None:intergenic | 25.0% |
| !! | CAATCAAATTTAACTTCAAC+AGG | - | chr4.2:82772344-82772363 | None:intergenic | 25.0% |
| !! | TATCATGATAGTTTTCATGT+AGG | - | chr4.2:82774100-82774119 | None:intergenic | 25.0% |
| !! | TCTTTAGTTTCCTTATATGA+TGG | + | chr4.2:82773640-82773659 | MS.gene92578:CDS | 25.0% |
| !! | TTTGAGATATAAAGTAAACG+AGG | + | chr4.2:82774774-82774793 | MS.gene92578:CDS | 25.0% |
| !!! | AATTAGTCTTTTATTGAAGG+AGG | + | chr4.2:82775004-82775023 | MS.gene92578:intron | 25.0% |
| !!! | GGAATAACTCTATTTTTGTT+AGG | - | chr4.2:82774517-82774536 | None:intergenic | 25.0% |
| AGATAATATCTTCACCTTTC+TGG | - | chr4.2:82773764-82773783 | None:intergenic | 30.0% | |
| AGTAAAGATGAATCTACAGA+TGG | + | chr4.2:82773511-82773530 | MS.gene92578:CDS | 30.0% | |
| ATAATGAACCAAAAACCTGA+AGG | - | chr4.2:82775103-82775122 | None:intergenic | 30.0% | |
| ATAGTTCAAAAAAATGTGGG+AGG | - | chr4.2:82773985-82774004 | None:intergenic | 30.0% | |
| ATGAATTACCTAGAACATCA+AGG | - | chr4.2:82774307-82774326 | None:intergenic | 30.0% | |
| CAACCGTTTCTGTAAAATAA+TGG | + | chr4.2:82775391-82775410 | MS.gene92578:CDS | 30.0% | |
| CTGAAAATGATTGTTCTGAT+GGG | + | chr4.2:82772546-82772565 | MS.gene92578:CDS | 30.0% | |
| CTGAAAATGATTGTTTCGAT+GGG | + | chr4.2:82772366-82772385 | MS.gene92578:CDS | 30.0% | |
| CTGAAAGTGATTGTTTCAAT+GGG | + | chr4.2:82772186-82772205 | MS.gene92578:CDS | 30.0% | |
| GTAAAGATGAATCTACAGAT+GGG | + | chr4.2:82773512-82773531 | MS.gene92578:CDS | 30.0% | |
| GTATATACTACCAACTACTA+AGG | - | chr4.2:82774896-82774915 | None:intergenic | 30.0% | |
| GTTTCTATGACTGATATCAA+CGG | - | chr4.2:82773894-82773913 | None:intergenic | 30.0% | |
| TAAAGATGAATCTACAGATG+GGG | + | chr4.2:82773513-82773532 | MS.gene92578:CDS | 30.0% | |
| TAAAGTGGCTAATCATGATT+TGG | + | chr4.2:82773453-82773472 | MS.gene92578:CDS | 30.0% | |
| TAATGAACCAAAAACCTGAA+GGG | - | chr4.2:82775102-82775121 | None:intergenic | 30.0% | |
| ! | AAATCATGATTAGCCACTTT+AGG | - | chr4.2:82773454-82773473 | None:intergenic | 30.0% |
| ! | AAGATCATGCATTGATGTAA+TGG | + | chr4.2:82771704-82771723 | MS.gene92578:CDS | 30.0% |
| ! | ACTGCACTATTACTCTAAAA+TGG | - | chr4.2:82774871-82774890 | None:intergenic | 30.0% |
| ! | TTAGTTGTCTGTTTCTTGTT+TGG | + | chr4.2:82775599-82775618 | MS.gene92578:intron | 30.0% |
| ! | TTTTCATATTCCACTACAGA+CGG | + | chr4.2:82773024-82773043 | MS.gene92578:CDS | 30.0% |
| !! | TCATTAGTTCGTTTTTCTTC+AGG | + | chr4.2:82773823-82773842 | MS.gene92578:intron | 30.0% |
| !!! | ATTCTTGATCACTGATTTTC+AGG | + | chr4.2:82775292-82775311 | MS.gene92578:intron | 30.0% |
| AAGGTTATTGTCAACCAGAA+AGG | + | chr4.2:82773747-82773766 | MS.gene92578:CDS | 35.0% | |
| AAGTCCTTAATGTATCTCGT+GGG | + | chr4.2:82771598-82771617 | MS.gene92578:CDS | 35.0% | |
| AAGTTACTACCAGTGTCAAT+GGG | + | chr4.2:82775524-82775543 | MS.gene92578:intron | 35.0% | |
| AATCCATAACATGGATGATG+AGG | + | chr4.2:82771791-82771810 | MS.gene92578:CDS | 35.0% | |
| AATGCTACAAAAGCTGAAGA+AGG | + | chr4.2:82775332-82775351 | MS.gene92578:CDS | 35.0% | |
| ACAAGAAAGCTCTATGTATC+CGG | - | chr4.2:82775160-82775179 | None:intergenic | 35.0% | |
| ACGAGAAGAATTACGAATCT+TGG | - | chr4.2:82774578-82774597 | None:intergenic | 35.0% | |
| ACTTCTTGTGATGAACATGA+AGG | + | chr4.2:82773700-82773719 | MS.gene92578:CDS | 35.0% | |
| AGAAGATGATCCTGATTTCA+TGG | + | chr4.2:82771974-82771993 | MS.gene92578:CDS | 35.0% | |
| AGGTCTTCAAATTCAATTGC+AGG | - | chr4.2:82773121-82773140 | None:intergenic | 35.0% | |
| AGTAATGCTTGAAATTGCCA+TGG | + | chr4.2:82774154-82774173 | MS.gene92578:intron | 35.0% | |
| AGTGAAGATGAATATACAGC+TGG | + | chr4.2:82773274-82773293 | MS.gene92578:CDS | 35.0% | |
| ATACTACTCCGCAAACTATA+TGG | - | chr4.2:82774953-82774972 | None:intergenic | 35.0% | |
| ATTCACTAAGAACAAGTCTG+TGG | - | chr4.2:82774807-82774826 | None:intergenic | 35.0% | |
| CAATCAGAAGAGATACTAGA+CGG | + | chr4.2:82772101-82772120 | MS.gene92578:CDS | 35.0% | |
| CAATCAGAAGAGATACTAGA+TGG | + | chr4.2:82772101-82772120 | MS.gene92578:CDS | 35.0% | |
| CATCTAGTATCTCTTCTGAT+TGG | - | chr4.2:82772283-82772302 | None:intergenic | 35.0% | |
| CATTAGTAAGTAGGCGAATT+AGG | + | chr4.2:82774324-82774343 | MS.gene92578:intron | 35.0% | |
| CCATTGAAACAATCACTTTC+AGG | - | chr4.2:82772188-82772207 | None:intergenic | 35.0% | |
| CCTGAAAATGATTGTTCTGA+TGG | + | chr4.2:82772545-82772564 | MS.gene92578:CDS | 35.0% | |
| CCTGAAAATGATTGTTTCGA+TGG | + | chr4.2:82772365-82772384 | MS.gene92578:CDS | 35.0% | |
| CCTGAAAGTGATTGTTTCAA+TGG | + | chr4.2:82772185-82772204 | MS.gene92578:CDS | 35.0% | |
| CTGAAAATGATTGTTCCGAT+GGG | + | chr4.2:82772726-82772745 | MS.gene92578:CDS | 35.0% | |
| CTTACTAAAGCAGATTATGC+CGG | + | chr4.2:82775138-82775157 | MS.gene92578:intron | 35.0% | |
| GAAAACTGAACCTGATGTTT+GGG | + | chr4.2:82771740-82771759 | MS.gene92578:CDS | 35.0% | |
| GAATCTGAAGAGATACTAGA+CGG | + | chr4.2:82772821-82772840 | MS.gene92578:CDS | 35.0% | |
| GATAAAGATCTTGACTCTGT+AGG | + | chr4.2:82773211-82773230 | MS.gene92578:CDS | 35.0% | |
| GCTTTAGTAAGTGACAGATA+GGG | - | chr4.2:82775129-82775148 | None:intergenic | 35.0% | |
| GGGCATTAAAATGTAAACAG+AGG | - | chr4.2:82775078-82775097 | None:intergenic | 35.0% | |
| GTCTTCTTTACTTTCTCTAC+CGG | - | chr4.2:82772225-82772244 | None:intergenic | 35.0% | |
| GTCTTCTTTACTTTCTCTAC+TGG | - | chr4.2:82772225-82772244 | None:intergenic | 35.0% | |
| TATCCTCTCACCATCATATA+AGG | - | chr4.2:82773653-82773672 | None:intergenic | 35.0% | |
| TATGTATGCCTTGATGTTCT+AGG | + | chr4.2:82774296-82774315 | MS.gene92578:intron | 35.0% | |
| TGAAAACTGAACCTGATGTT+TGG | + | chr4.2:82771739-82771758 | MS.gene92578:CDS | 35.0% | |
| TGAGAGGATACATGTTAAAG+AGG | + | chr4.2:82773663-82773682 | MS.gene92578:CDS | 35.0% | |
| TGCTTTAGTAAGTGACAGAT+AGG | - | chr4.2:82775130-82775149 | None:intergenic | 35.0% | |
| TGTTCAGACAATCCATAACA+TGG | + | chr4.2:82771782-82771801 | MS.gene92578:CDS | 35.0% | |
| TTAAAGATAGCTGCAAAGCA+AGG | + | chr4.2:82771856-82771875 | MS.gene92578:CDS | 35.0% | |
| TTAAATGCAACCACATGTCT+TGG | - | chr4.2:82775502-82775521 | None:intergenic | 35.0% | |
| TTCTCACTCAATAAAGTCCA+TGG | - | chr4.2:82774174-82774193 | None:intergenic | 35.0% | |
| TTTCGTCTATCTGGATTGTT+GGG | - | chr4.2:82774041-82774060 | None:intergenic | 35.0% | |
| ! | ACACAGAAATAACTCTAGAG+TGG | + | chr4.2:82772963-82772982 | MS.gene92578:CDS | 35.0% |
| ! | ATAAGAATGGTGATGCAGAA+AGG | + | chr4.2:82774455-82774474 | MS.gene92578:CDS | 35.0% |
| ! | ATCATGCATTGATGTAATGG+AGG | + | chr4.2:82771707-82771726 | MS.gene92578:CDS | 35.0% |
| ! | ATTCCAAAGACTTCTAGAAG+TGG | + | chr4.2:82774532-82774551 | MS.gene92578:CDS | 35.0% |
| ! | CCATCAGAACAATCATTTTC+AGG | - | chr4.2:82772548-82772567 | None:intergenic | 35.0% |
| ! | CCATCGAAACAATCATTTTC+AGG | - | chr4.2:82772368-82772387 | None:intergenic | 35.0% |
| ! | TCAATTCAAGAGTATGGTAG+AGG | - | chr4.2:82775426-82775445 | None:intergenic | 35.0% |
| ! | TGAATACTATCAGCTTTGTG+TGG | + | chr4.2:82775575-82775594 | MS.gene92578:intron | 35.0% |
| ! | TTTCCTTATATGATGGTGAG+AGG | + | chr4.2:82773647-82773666 | MS.gene92578:CDS | 35.0% |
| ! | TTTTCGTCTATCTGGATTGT+TGG | - | chr4.2:82774042-82774061 | None:intergenic | 35.0% |
| !! | TTTCAAAGGTGGGTTTGTTA+CGG | + | chr4.2:82771575-82771594 | MS.gene92578:CDS | 35.0% |
| AACATGGACTCAATCCTGAT+GGG | + | chr4.2:82773332-82773351 | MS.gene92578:CDS | 40.0% | |
| AAGCAATCATTTGCTTCCGA+AGG | + | chr4.2:82773397-82773416 | MS.gene92578:CDS | 40.0% | |
| ACCAATGTCATCATCACCTT+CGG | - | chr4.2:82773416-82773435 | None:intergenic | 40.0% | |
| AGAAGTGGTTCCAATCTTCA+GGG | + | chr4.2:82774547-82774566 | MS.gene92578:CDS | 40.0% | |
| AGATGATTCACCTGAATACG+AGG | + | chr4.2:82773372-82773391 | MS.gene92578:CDS | 40.0% | |
| AGGTTCTATGAGGATGATGA+GGG | + | chr4.2:82775769-82775788 | MS.gene92578:CDS | 40.0% | |
| AGTGCAGTTTCCTTAGTAGT+TGG | + | chr4.2:82774883-82774902 | MS.gene92578:intron | 40.0% | |
| AGTTACTACCAGTGTCAATG+GGG | + | chr4.2:82775525-82775544 | MS.gene92578:intron | 40.0% | |
| ATCCATAGATTGAGGTATGC+AGG | - | chr4.2:82774268-82774287 | None:intergenic | 40.0% | |
| ATTGAGTCCATGTTCGTTAG+TGG | - | chr4.2:82773326-82773345 | None:intergenic | 40.0% | |
| CAACCTCATCATCCATGTTA+TGG | - | chr4.2:82771797-82771816 | None:intergenic | 40.0% | |
| CAAGTTACTACCAGTGTCAA+TGG | + | chr4.2:82775523-82775542 | MS.gene92578:intron | 40.0% | |
| CAATCTCTTGGGAAGACATT+GGG | - | chr4.2:82772610-82772629 | None:intergenic | 40.0% | |
| CACAAGATGTAGTGCGTAAA+GGG | + | chr4.2:82775698-82775717 | MS.gene92578:CDS | 40.0% | |
| CATAACATGGATGATGAGGT+TGG | + | chr4.2:82771795-82771814 | MS.gene92578:CDS | 40.0% | |
| CCTGAAAATGATTGTTCCGA+TGG | + | chr4.2:82772725-82772744 | MS.gene92578:CDS | 40.0% | |
| CGTCTAGTATCTCTTCTGAT+TGG | - | chr4.2:82772103-82772122 | None:intergenic | 40.0% | |
| CTGGTTGACAATAACCTTTC+AGG | - | chr4.2:82773745-82773764 | None:intergenic | 40.0% | |
| GAAGTCCTTAATGTATCTCG+TGG | + | chr4.2:82771597-82771616 | MS.gene92578:CDS | 40.0% | |
| GCATCACCATTCTTATCAGT+CGG | - | chr4.2:82774451-82774470 | None:intergenic | 40.0% | |
| GTCAACTAGCACAATCTCTT+GGG | - | chr4.2:82772801-82772820 | None:intergenic | 40.0% | |
| GTCTTCTTTACTTTCTCGAC+CGG | - | chr4.2:82772405-82772424 | None:intergenic | 40.0% | |
| TAACACAACACCAAGACATG+TGG | + | chr4.2:82775489-82775508 | MS.gene92578:intron | 40.0% | |
| TAGAAGTGGTTCCAATCTTC+AGG | + | chr4.2:82774546-82774565 | MS.gene92578:CDS | 40.0% | |
| TAGGTTCTATGAGGATGATG+AGG | + | chr4.2:82775768-82775787 | MS.gene92578:CDS | 40.0% | |
| TCTTTATCACTAGCCACTTC+AGG | - | chr4.2:82773199-82773218 | None:intergenic | 40.0% | |
| TGCGCTTCAATTCAAGAGTA+TGG | - | chr4.2:82775432-82775451 | None:intergenic | 40.0% | |
| TTCCTGAGAAGATGGTGAAA+TGG | - | chr4.2:82773849-82773868 | None:intergenic | 40.0% | |
| ! | AAGCTGAAGAAGGTGCAAAA+CGG | + | chr4.2:82775342-82775361 | MS.gene92578:CDS | 40.0% |
| ! | ATCTCTTCTGATTGGTCAAC+TGG | - | chr4.2:82772095-82772114 | None:intergenic | 40.0% |
| ! | CCATCGGAACAATCATTTTC+AGG | - | chr4.2:82772728-82772747 | None:intergenic | 40.0% |
| ! | GAACCACTTCTAGAAGTCTT+TGG | - | chr4.2:82774538-82774557 | None:intergenic | 40.0% |
| ! | GTCTGATGATGATGATGCAA+AGG | + | chr4.2:82771677-82771696 | MS.gene92578:CDS | 40.0% |
| ! | TCATGATTAGCCACTTTAGG+TGG | - | chr4.2:82773451-82773470 | None:intergenic | 40.0% |
| ! | TGCATTGATGTAATGGAGGA+AGG | + | chr4.2:82771711-82771730 | MS.gene92578:CDS | 40.0% |
| !! | TCTTGGTGTTGTGTTAGTGT+CGG | - | chr4.2:82775485-82775504 | None:intergenic | 40.0% |
| !!! | CACTGATTTTCAGGCAAGAA+TGG | + | chr4.2:82775301-82775320 | MS.gene92578:intron | 40.0% |
| AACATGGATGATGAGGTTGG+TGG | + | chr4.2:82771798-82771817 | MS.gene92578:CDS | 45.0% | |
| AACTAGCACAATCTCTTGGG+AGG | - | chr4.2:82772798-82772817 | None:intergenic | 45.0% | |
| AATGAGCCAGATGACTGTTC+TGG | + | chr4.2:82772923-82772942 | MS.gene92578:CDS | 45.0% | |
| AATGGGCAAGATGACTGTTC+CGG | + | chr4.2:82772203-82772222 | MS.gene92578:CDS | 45.0% | |
| ACAATCTCTTGGGAGGACAT+TGG | - | chr4.2:82772791-82772810 | None:intergenic | 45.0% | |
| ACAGAGCCGACTGATAAGAA+TGG | + | chr4.2:82774442-82774461 | MS.gene92578:CDS | 45.0% | |
| ACTGATATCAACGGTCTCCA+TGG | - | chr4.2:82773885-82773904 | None:intergenic | 45.0% | |
| AGATCTTGACTCTGTAGGTC+TGG | + | chr4.2:82773216-82773235 | MS.gene92578:CDS | 45.0% | |
| AGGAAGAGAAAACGCTCACA+AGG | + | chr4.2:82771876-82771895 | MS.gene92578:CDS | 45.0% | |
| ATAGCATTCGCTGATGAAGC+AGG | + | chr4.2:82775727-82775746 | MS.gene92578:CDS | 45.0% | |
| CAATCTCTTGGGAGGACATT+GGG | - | chr4.2:82772790-82772809 | None:intergenic | 45.0% | |
| CATCCTCATAGAACCTAACC+TGG | - | chr4.2:82775765-82775784 | None:intergenic | 45.0% | |
| CCACAAGATGTAGTGCGTAA+AGG | + | chr4.2:82775697-82775716 | MS.gene92578:CDS | 45.0% | |
| CCTTTACGCACTACATCTTG+TGG | - | chr4.2:82775700-82775719 | None:intergenic | 45.0% | |
| CGTCAACTAGCACAATCTCT+TGG | - | chr4.2:82772802-82772821 | None:intergenic | 45.0% | |
| CTATGACTACAACAGCAGCA+AGG | - | chr4.2:82774136-82774155 | None:intergenic | 45.0% | |
| CTCCTGCATACCTCAATCTA+TGG | + | chr4.2:82774263-82774282 | MS.gene92578:intron | 45.0% | |
| CTGAGAGTCTCCATGAAATC+AGG | - | chr4.2:82771987-82772006 | None:intergenic | 45.0% | |
| GAACATGGACTCAATCCTGA+TGG | + | chr4.2:82773331-82773350 | MS.gene92578:CDS | 45.0% | |
| GAACCAAAAACCTGAAGGGA+GGG | - | chr4.2:82775098-82775117 | None:intergenic | 45.0% | |
| GAAGGTAGTTCAAAGCTGCA+TGG | + | chr4.2:82773718-82773737 | MS.gene92578:CDS | 45.0% | |
| GACAAAAACCCCATTGACAC+TGG | - | chr4.2:82775536-82775555 | None:intergenic | 45.0% | |
| GATGACTACAACGCTCCATT+CGG | - | chr4.2:82771539-82771558 | None:intergenic | 45.0% | |
| GATTGCTTCTCCTCGTATTC+AGG | - | chr4.2:82773385-82773404 | None:intergenic | 45.0% | |
| GCAATCTCTTGGGAAGACAT+TGG | - | chr4.2:82772611-82772630 | None:intergenic | 45.0% | |
| GGTCAACTAGCACAATCTCT+GGG | - | chr4.2:82772442-82772461 | None:intergenic | 45.0% | |
| GTCAACTAGCACAATCTCTG+GGG | - | chr4.2:82772441-82772460 | None:intergenic | 45.0% | |
| GTCAACTAGCGCAATCTCTT+GGG | - | chr4.2:82772621-82772640 | None:intergenic | 45.0% | |
| GTCCTTCATGCACTTCTTCT+TGG | - | chr4.2:82772045-82772064 | None:intergenic | 45.0% | |
| GTGGCTGTCTTTCATGTCAA+GGG | + | chr4.2:82775364-82775383 | MS.gene92578:CDS | 45.0% | |
| TACTGAACAAGGCCTCAATC+CGG | + | chr4.2:82773564-82773583 | MS.gene92578:CDS | 45.0% | |
| TCATCACATGCCCAAACATC+AGG | - | chr4.2:82771753-82771772 | None:intergenic | 45.0% | |
| TCCTTAATGTATCTCGTGGG+CGG | + | chr4.2:82771601-82771620 | MS.gene92578:CDS | 45.0% | |
| TCTCGTTCAGCAACTCATCT+GGG | + | chr4.2:82774592-82774611 | MS.gene92578:CDS | 45.0% | |
| TCTCTACCAGAACAGTCATC+TGG | - | chr4.2:82772932-82772951 | None:intergenic | 45.0% | |
| TCTCTACTGGAACAGTCATC+TGG | - | chr4.2:82772752-82772771 | None:intergenic | 45.0% | |
| TGAACCAAAAACCTGAAGGG+AGG | - | chr4.2:82775099-82775118 | None:intergenic | 45.0% | |
| TGGAGGTGAAGAACTACTGT+CGG | - | chr4.2:82775659-82775678 | None:intergenic | 45.0% | |
| TGGTCAACTAGCACAATCTC+TGG | - | chr4.2:82772443-82772462 | None:intergenic | 45.0% | |
| TGTGGGAGGATTCTATAACG+TGG | - | chr4.2:82773971-82773990 | None:intergenic | 45.0% | |
| TTACGCACTACATCTTGTGG+AGG | - | chr4.2:82775697-82775716 | None:intergenic | 45.0% | |
| TTATCACTAGCCACTTCAGG+TGG | - | chr4.2:82773196-82773215 | None:intergenic | 45.0% | |
| TTCTCGTTCAGCAACTCATC+TGG | + | chr4.2:82774591-82774610 | MS.gene92578:CDS | 45.0% | |
| ! | ACAATCTCTGGGGAAGACAT+TGG | - | chr4.2:82772431-82772450 | None:intergenic | 45.0% |
| ! | ACTAGTCTCACCACCTAAAG+TGG | + | chr4.2:82773438-82773457 | MS.gene92578:CDS | 45.0% |
| ! | ACTCAATCCTGATGGGTATC+TGG | + | chr4.2:82773339-82773358 | MS.gene92578:CDS | 45.0% |
| ! | CAATCTCTGGGGAAGACATT+GGG | - | chr4.2:82772430-82772449 | None:intergenic | 45.0% |
| ! | CAGAGCTTTTCCTGAGAAGA+TGG | - | chr4.2:82773857-82773876 | None:intergenic | 45.0% |
| ! | CTTTTCCATGTGGTCTTCTG+GGG | - | chr4.2:82771946-82771965 | None:intergenic | 45.0% |
| ! | GACCAAGAAGAAGTGCATGA+AGG | + | chr4.2:82772040-82772059 | MS.gene92578:CDS | 45.0% |
| ! | GCTTTTCCATGTGGTCTTCT+GGG | - | chr4.2:82771947-82771966 | None:intergenic | 45.0% |
| ! | GTTTGGGCATGTGATGATGA+TGG | + | chr4.2:82771756-82771775 | MS.gene92578:CDS | 45.0% |
| ! | TCCGAAGGTGATGATGACAT+TGG | + | chr4.2:82773412-82773431 | MS.gene92578:CDS | 45.0% |
| ! | TGCTTTTCCATGTGGTCTTC+TGG | - | chr4.2:82771948-82771967 | None:intergenic | 45.0% |
| !! | ATTGAGGCCTTGTTCAGTAG+TGG | - | chr4.2:82773563-82773582 | None:intergenic | 45.0% |
| !! | CATTTTAATGCCCTCCCTTC+AGG | + | chr4.2:82775085-82775104 | MS.gene92578:intron | 45.0% |
| !!! | CTGTTTGCTGCTTTTCCATG+TGG | - | chr4.2:82771956-82771975 | None:intergenic | 45.0% |
| ACAATCTCCGGGAAGGACAT+TGG | - | chr4.2:82772071-82772090 | None:intergenic | 50.0% | |
| ACAGCCTCTTGGGAAGACAT+TGG | - | chr4.2:82772251-82772270 | None:intergenic | 50.0% | |
| AGCAGCTGAATCTCCACTAG+TGG | - | chr4.2:82772681-82772700 | None:intergenic | 50.0% | |
| ATCATCCCCAGAAGACCACA+TGG | + | chr4.2:82771938-82771957 | MS.gene92578:CDS | 50.0% | |
| CAAAGCTGCATGGTCCTGAA+AGG | + | chr4.2:82773728-82773747 | MS.gene92578:CDS | 50.0% | |
| CAAGAGTTCTCACCCTCTAG+TGG | + | chr4.2:82772125-82772144 | MS.gene92578:CDS | 50.0% | |
| CAATCTCCGGGAAGGACATT+GGG | - | chr4.2:82772070-82772089 | None:intergenic | 50.0% | |
| CAGCCTCTTGGGAAGACATT+GGG | - | chr4.2:82772250-82772269 | None:intergenic | 50.0% | |
| CCAGCTGAATCTCCACTAGA+GGG | - | chr4.2:82772140-82772159 | None:intergenic | 50.0% | |
| CGACAAACCAGATACCCATC+AGG | - | chr4.2:82773349-82773368 | None:intergenic | 50.0% | |
| CTCGTTCAGCAACTCATCTG+GGG | + | chr4.2:82774593-82774612 | MS.gene92578:CDS | 50.0% | |
| CTCTGCTCCACTACTGAACA+AGG | + | chr4.2:82773553-82773572 | MS.gene92578:CDS | 50.0% | |
| GAATCGTCAGAGAGACGAAC+CGG | - | chr4.2:82773598-82773617 | None:intergenic | 50.0% | |
| GACGGTGAAGCCATCTGATA+TGG | + | chr4.2:82773042-82773061 | MS.gene92578:CDS | 50.0% | |
| GATTGCTTCGCGTCGTATTC+AGG | - | chr4.2:82773622-82773641 | None:intergenic | 50.0% | |
| GCAGCTGAATCACCACTAGA+GGG | - | chr4.2:82772320-82772339 | None:intergenic | 50.0% | |
| GCAGCTGAATCTCCACTAGT+GGG | - | chr4.2:82772680-82772699 | None:intergenic | 50.0% | |
| GGAAAAGCTCTGCAAAGCCA+TGG | + | chr4.2:82773865-82773884 | MS.gene92578:CDS | 50.0% | |
| GGCCATTTCACCATCTTCTC+AGG | + | chr4.2:82773844-82773863 | MS.gene92578:intron | 50.0% | |
| GGTCAACTAGCGCAATCTCT+TGG | - | chr4.2:82772622-82772641 | None:intergenic | 50.0% | |
| GGTGGCTGTCTTTCATGTCA+AGG | + | chr4.2:82775363-82775382 | MS.gene92578:CDS | 50.0% | |
| GTGAACTAGCACAGCCTCTT+GGG | - | chr4.2:82772261-82772280 | None:intergenic | 50.0% | |
| GTGCCAGGTTAGGTTCTATG+AGG | + | chr4.2:82775759-82775778 | MS.gene92578:CDS | 50.0% | |
| TCTCTACCGGAACAGTCATC+TGG | - | chr4.2:82772212-82772231 | None:intergenic | 50.0% | |
| TCTCTTGGGAAGACATTGGG+TGG | - | chr4.2:82772607-82772626 | None:intergenic | 50.0% | |
| TGAATCTACAGATGGGGCTG+AGG | + | chr4.2:82773519-82773538 | MS.gene92578:CDS | 50.0% | |
| TGGTCAACTGGCACAATCTC+CGG | - | chr4.2:82772083-82772102 | None:intergenic | 50.0% | |
| TTGCAGGAAAGCTTGCAGAC+TGG | - | chr4.2:82773105-82773124 | None:intergenic | 50.0% | |
| ! | AATGGTGATGCAGAAAGGCC+TGG | + | chr4.2:82774460-82774479 | MS.gene92578:CDS | 50.0% |
| ! | ATGTGGTCTTCTGGGGATGA+TGG | - | chr4.2:82771939-82771958 | None:intergenic | 50.0% |
| ! | CTGAAGAAGGTGCAAAACGG+TGG | + | chr4.2:82775345-82775364 | MS.gene92578:CDS | 50.0% |
| ! | GGAGGCGAGACTACATTTTG+TGG | - | chr4.2:82775679-82775698 | None:intergenic | 50.0% |
| ! | GGCGAGACTACATTTTGTGG+AGG | - | chr4.2:82775676-82775695 | None:intergenic | 50.0% |
| !! | ATGCCCTCCCTTCAGGTTTT+TGG | + | chr4.2:82775092-82775111 | MS.gene92578:intron | 50.0% |
| AACTGGCACAATCTCCGGGA+AGG | - | chr4.2:82772078-82772097 | None:intergenic | 55.0% | |
| ACCAGTCTCACCACCTGAAG+TGG | + | chr4.2:82773183-82773202 | MS.gene92578:CDS | 55.0% | |
| AGACGAACCGGACATCCATC+CGG | - | chr4.2:82773586-82773605 | None:intergenic | 55.0% | |
| AGCAGCTGAATCTCCACCAG+AGG | - | chr4.2:82772501-82772520 | None:intergenic | 55.0% | |
| ATGAGTTCCCACCGTCTAGC+AGG | + | chr4.2:82772846-82772865 | MS.gene92578:CDS | 55.0% | |
| CAAGAGTTCTCGCCCACTAG+TGG | + | chr4.2:82772665-82772684 | MS.gene92578:CDS | 55.0% | |
| CCACCCAATGTCTTCCCAAG+AGG | + | chr4.2:82772244-82772263 | MS.gene92578:CDS | 55.0% | |
| CCCTCTAGTGGAGATTCAGC+TGG | + | chr4.2:82772137-82772156 | MS.gene92578:CDS | 55.0% | |
| CCTCAATCCGGATGGATGTC+CGG | + | chr4.2:82773576-82773595 | MS.gene92578:CDS | 55.0% | |
| CCTCTTGGGAAGACATTGGG+TGG | - | chr4.2:82772247-82772266 | None:intergenic | 55.0% | |
| CGCAGCTGAATCACCACTAG+AGG | - | chr4.2:82772321-82772340 | None:intergenic | 55.0% | |
| CTGAATCCCTGCTAGACGGT+GGG | - | chr4.2:82772856-82772875 | None:intergenic | 55.0% | |
| GAACAAGGCCTCAATCCGGA+TGG | + | chr4.2:82773568-82773587 | MS.gene92578:CDS | 55.0% | |
| GATGGCTTCACCGTCTGTAG+TGG | - | chr4.2:82773037-82773056 | None:intergenic | 55.0% | |
| GATGGGCCAGATGACTGTTC+CGG | + | chr4.2:82772383-82772402 | MS.gene92578:CDS | 55.0% | |
| GCAGCTGAATCCCTGCTAGA+CGG | - | chr4.2:82772860-82772879 | None:intergenic | 55.0% | |
| GCAGCTGAATCTCCACCAGA+GGG | - | chr4.2:82772500-82772519 | None:intergenic | 55.0% | |
| GCAGTTCTCGAGACAACACC+AGG | - | chr4.2:82774481-82774500 | None:intergenic | 55.0% | |
| GCATTCGCTGATGAAGCAGG+TGG | + | chr4.2:82775730-82775749 | MS.gene92578:CDS | 55.0% | |
| GCCAGCTGAATCTCCACTAG+AGG | - | chr4.2:82772141-82772160 | None:intergenic | 55.0% | |
| GCCGCCCACGAGATACATTA+AGG | - | chr4.2:82771605-82771624 | None:intergenic | 55.0% | |
| GGAACAGTCATCTGGCCCAT+CGG | - | chr4.2:82772384-82772403 | None:intergenic | 55.0% | |
| GGTCAACTGGCACAATCTCC+GGG | - | chr4.2:82772082-82772101 | None:intergenic | 55.0% | |
| GGTGAACTAGCACAGCCTCT+TGG | - | chr4.2:82772262-82772281 | None:intergenic | 55.0% | |
| GTGGAAAGCTGTGCCAGGTT+AGG | + | chr4.2:82775749-82775768 | MS.gene92578:CDS | 55.0% | |
| TACAACGCTCCATTCGGCCT+AGG | - | chr4.2:82771533-82771552 | None:intergenic | 55.0% | |
| TACAGATGGGGCTGAGGTTC+AGG | + | chr4.2:82773525-82773544 | MS.gene92578:CDS | 55.0% | |
| TCCATGTTCGTTAGTGGCGC+AGG | - | chr4.2:82773320-82773339 | None:intergenic | 55.0% | |
| TCCTGCGCCACTAACGAACA+TGG | + | chr4.2:82773316-82773335 | MS.gene92578:CDS | 55.0% | |
| TCTCGACCGGAACAGTCATC+TGG | - | chr4.2:82772392-82772411 | None:intergenic | 55.0% | |
| TCTCTTGGGAGGACATTGGG+TGG | - | chr4.2:82772787-82772806 | None:intergenic | 55.0% | |
| TGAGTTCCCACCGTCTAGCA+GGG | + | chr4.2:82772847-82772866 | MS.gene92578:CDS | 55.0% | |
| ! | TCTCTGGGGAAGACATTGGG+TGG | - | chr4.2:82772427-82772446 | None:intergenic | 55.0% |
| !! | CTTGGAAGCGCCCTGAAGAT+TGG | - | chr4.2:82774560-82774579 | None:intergenic | 55.0% |
| AGCAGGTGGAAAGCTGTGCC+AGG | + | chr4.2:82775744-82775763 | MS.gene92578:CDS | 60.0% | |
| CAAGAGTTCTCGCCCTCTGG+TGG | + | chr4.2:82772485-82772504 | MS.gene92578:CDS | 60.0% | |
| CACCAGAGGGCGAGAACTCT+TGG | - | chr4.2:82772487-82772506 | None:intergenic | 60.0% | |
| CCGGACATCCATCCGGATTG+AGG | - | chr4.2:82773579-82773598 | None:intergenic | 60.0% | |
| GCCACTTCAGGTGGTGAGAC+TGG | - | chr4.2:82773187-82773206 | None:intergenic | 60.0% | |
| GCTGAATCCCTGCTAGACGG+TGG | - | chr4.2:82772857-82772876 | None:intergenic | 60.0% | |
| GGACCACCCAATGTCCTTCC+CGG | + | chr4.2:82772061-82772080 | MS.gene92578:CDS | 60.0% | |
| TCTCCGGGAAGGACATTGGG+TGG | - | chr4.2:82772067-82772086 | None:intergenic | 60.0% | |
| GGCCAAGAGTTCTCGCCCTC+TGG | + | chr4.2:82772482-82772501 | MS.gene92578:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 82771522 | 82775813 | 82771522 | ID=MS.gene92578 |
| chr4.2 | mRNA | 82771522 | 82775813 | 82771522 | ID=MS.gene92578.t1;Parent=MS.gene92578 |
| chr4.2 | exon | 82771522 | 82773768 | 82771522 | ID=MS.gene92578.t1.exon1;Parent=MS.gene92578.t1 |
| chr4.2 | CDS | 82771522 | 82773768 | 82771522 | ID=cds.MS.gene92578.t1;Parent=MS.gene92578.t1 |
| chr4.2 | exon | 82773845 | 82773920 | 82773845 | ID=MS.gene92578.t1.exon2;Parent=MS.gene92578.t1 |
| chr4.2 | CDS | 82773845 | 82773920 | 82773845 | ID=cds.MS.gene92578.t1;Parent=MS.gene92578.t1 |
| chr4.2 | exon | 82774419 | 82774795 | 82774419 | ID=MS.gene92578.t1.exon3;Parent=MS.gene92578.t1 |
| chr4.2 | CDS | 82774419 | 82774795 | 82774419 | ID=cds.MS.gene92578.t1;Parent=MS.gene92578.t1 |
| chr4.2 | exon | 82775314 | 82775412 | 82775314 | ID=MS.gene92578.t1.exon4;Parent=MS.gene92578.t1 |
| chr4.2 | CDS | 82775314 | 82775412 | 82775314 | ID=cds.MS.gene92578.t1;Parent=MS.gene92578.t1 |
| chr4.2 | exon | 82775649 | 82775813 | 82775649 | ID=MS.gene92578.t1.exon5;Parent=MS.gene92578.t1 |
| chr4.2 | CDS | 82775649 | 82775813 | 82775649 | ID=cds.MS.gene92578.t1;Parent=MS.gene92578.t1 |
| Gene Sequence |
| Protein sequence |
