AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene92732

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92732.t1 MTR_3g030540 93.135 437 30 0 4 440 1 437 0.0 832
MS.gene92732.t1 MTR_2g060350 62.247 445 158 6 4 440 1 443 0.0 559
MS.gene92732.t1 MTR_1g052315 50.115 433 202 3 16 438 2 430 3.65e-145 421
MS.gene92732.t1 MTR_7g091850 50.457 438 208 4 9 438 7 443 1.42e-140 410
MS.gene92732.t1 MTR_7g091840 48.942 378 183 5 9 382 7 378 1.79e-118 351
MS.gene92732.t1 MTR_2g103410 46.594 367 193 2 73 436 59 425 2.94e-110 332
MS.gene92732.t1 MTR_8g065030 44.293 368 203 2 49 414 41 408 4.82e-108 327
MS.gene92732.t1 MTR_6g005630 44.602 352 186 6 69 418 41 385 1.28e-96 296
MS.gene92732.t1 MTR_2g049400 41.476 393 217 9 48 437 6 388 5.66e-87 271
MS.gene92732.t1 MTR_4g084050 39.844 384 205 8 63 431 13 385 8.84e-85 265
MS.gene92732.t1 MTR_7g110050 39.833 359 196 6 74 417 68 421 6.95e-84 265
MS.gene92732.t1 MTR_1g086390 40.223 358 199 6 73 417 81 436 1.14e-82 262
MS.gene92732.t1 MTR_3g084360 39.247 372 211 6 67 431 18 381 1.43e-82 259
MS.gene92732.t1 MTR_3g084380 40.217 368 201 7 54 412 2 359 1.96e-82 259
MS.gene92732.t1 MTR_3g438050 42.075 347 189 8 71 411 25 365 3.15e-82 258
MS.gene92732.t1 MTR_6g005630 41.761 352 173 8 69 418 41 362 3.95e-82 258
MS.gene92732.t1 MTR_8g065010 38.583 381 198 7 65 411 94 472 6.04e-82 262
MS.gene92732.t1 MTR_3g054320 40.556 360 193 8 74 425 31 377 1.67e-81 257
MS.gene92732.t1 MTR_4g094715 41.076 353 187 7 74 411 66 412 2.60e-81 258
MS.gene92732.t1 MTR_4g083660 41.910 377 207 10 66 437 2 371 3.13e-81 255
MS.gene92732.t1 MTR_6g028080 39.837 369 196 8 72 427 29 384 3.81e-80 253
MS.gene92732.t1 MTR_5g033680 37.989 358 213 5 61 411 47 402 6.48e-80 255
MS.gene92732.t1 MTR_8g009810 41.600 375 208 9 70 439 32 400 1.64e-79 252
MS.gene92732.t1 MTR_5g034090 37.565 386 205 9 59 411 103 485 1.24e-78 253
MS.gene92732.t1 MTR_5g043350 38.859 368 211 5 66 426 22 382 2.47e-78 249
MS.gene92732.t1 MTR_2g435640 38.441 372 214 11 70 432 50 415 9.07e-78 248
MS.gene92732.t1 MTR_7g113910 48.062 258 116 1 166 423 95 334 1.20e-77 246
MS.gene92732.t1 MTR_2g103650 40.580 345 197 5 72 409 27 370 3.12e-77 246
MS.gene92732.t1 MTR_1g088160 39.316 351 196 11 74 415 36 378 3.46e-76 243
MS.gene92732.t1 MTR_8g010080 39.607 356 195 7 74 425 32 371 4.51e-76 243
MS.gene92732.t1 MTR_8g030930 40.541 370 199 10 55 415 15 372 7.72e-76 242
MS.gene92732.t1 MTR_4g120320 39.633 381 213 12 70 440 49 422 7.08e-74 238
MS.gene92732.t1 MTR_1g012390 38.525 366 208 9 69 426 24 380 2.26e-73 236
MS.gene92732.t1 MTR_2g103410 46.718 259 135 2 73 328 59 317 9.59e-72 229
MS.gene92732.t1 MTR_8g010090 39.210 329 181 6 74 398 32 345 2.55e-70 228
MS.gene92732.t1 MTR_2g058670 37.845 362 211 8 73 426 25 380 2.59e-70 228
MS.gene92732.t1 MTR_2g058840 37.883 359 213 7 73 426 25 378 3.01e-70 228
MS.gene92732.t1 MTR_2g032710 38.017 363 212 6 60 411 54 414 5.09e-70 229
MS.gene92732.t1 MTR_8g010110 39.450 327 179 6 74 396 32 343 1.23e-69 226
MS.gene92732.t1 MTR_0157s0060 39.888 356 195 5 77 425 2 345 2.68e-69 224
MS.gene92732.t1 MTR_4g034020 39.888 356 195 5 77 425 2 345 2.68e-69 224
MS.gene92732.t1 MTR_8g010040 38.338 373 208 10 70 437 29 384 3.02e-69 225
MS.gene92732.t1 MTR_1g013740 36.364 374 211 9 70 437 32 384 1.13e-68 223
MS.gene92732.t1 MTR_2g058640 37.989 358 205 8 91 438 41 391 7.68e-67 219
MS.gene92732.t1 MTR_8g010070 38.162 359 198 12 74 425 32 373 9.14e-67 218
MS.gene92732.t1 MTR_8g008765 38.602 329 183 6 74 398 32 345 4.51e-66 215
MS.gene92732.t1 MTR_2g029170 38.182 330 195 8 111 437 35 358 4.99e-66 216
MS.gene92732.t1 MTR_1g013730 35.389 373 214 9 70 436 24 375 2.15e-65 214
MS.gene92732.t1 MTR_7g035415 41.017 295 154 7 71 357 38 320 4.93e-65 212
MS.gene92732.t1 MTR_5g063430 37.459 307 178 6 63 364 15 312 2.94e-59 196
MS.gene92732.t1 MTR_5g034090 36.634 303 158 7 59 328 103 404 1.51e-57 195
MS.gene92732.t1 MTR_8g077320 39.735 302 137 7 71 357 31 302 2.82e-57 193
MS.gene92732.t1 MTR_8g008700 41.154 260 136 4 150 405 31 277 7.60e-57 189
MS.gene92732.t1 MTR_5g097860 34.056 323 202 7 71 387 23 340 1.84e-55 187
MS.gene92732.t1 MTR_8g010050 33.939 330 164 9 74 398 32 312 2.27e-49 172
MS.gene92732.t1 MTR_8g031180 46.073 191 98 1 211 396 70 260 3.14e-48 166
MS.gene92732.t1 MTR_2g100040 31.638 354 184 11 63 409 14 316 7.18e-42 152
MS.gene92732.t1 MTR_2g042740 28.834 326 197 11 138 437 128 444 3.49e-26 110
MS.gene92732.t1 MTR_4g124980 25.647 425 256 18 54 436 55 461 1.13e-23 103
MS.gene92732.t1 MTR_3g449590 25.253 396 256 12 63 426 37 424 1.87e-22 99.8
MS.gene92732.t1 MTR_1g086030 29.825 285 167 7 125 382 37 315 1.61e-21 96.3
MS.gene92732.t1 MTR_7g110710 29.268 328 192 14 140 440 117 431 1.24e-20 94.4
MS.gene92732.t1 MTR_7g110710 29.268 328 192 14 140 440 117 431 1.90e-20 94.0
MS.gene92732.t1 MTR_4g120730 27.551 294 188 9 159 436 143 427 3.37e-20 92.8
MS.gene92732.t1 MTR_1g086030 31.481 270 152 8 140 382 156 419 1.06e-19 91.7
MS.gene92732.t1 MTR_5g090160 24.870 386 239 12 63 411 34 405 4.10e-19 89.7
MS.gene92732.t1 MTR_7g078680 24.615 325 216 8 137 438 126 444 4.66e-19 89.7
MS.gene92732.t1 MTR_3g096330 26.756 299 186 10 159 438 179 463 2.05e-18 88.6
MS.gene92732.t1 MTR_8g098840 24.907 269 178 8 158 411 146 405 2.84e-18 87.4
MS.gene92732.t1 MTR_8g028725 24.623 398 264 13 71 438 53 444 5.08e-18 86.7
MS.gene92732.t1 MTR_7g088550 27.941 272 167 10 158 411 152 412 1.24e-17 85.5
MS.gene92732.t1 MTR_1g100060 25.253 297 188 10 140 411 167 454 1.34e-17 85.5
MS.gene92732.t1 MTR_1g100050 25.651 269 176 8 158 411 152 411 3.62e-17 84.0
MS.gene92732.t1 MTR_2g435340 25.231 325 209 9 130 436 51 359 3.35e-16 80.5
MS.gene92732.t1 MTR_2g435340 25.079 315 203 8 130 427 116 414 5.04e-16 80.1
MS.gene92732.t1 MTR_1g099850 23.684 304 198 10 140 418 129 423 2.19e-15 78.6
MS.gene92732.t1 MTR_1g100040 25.087 287 184 9 140 404 133 410 3.00e-15 78.2
MS.gene92732.t1 MTR_8g007320 50.847 59 28 1 367 425 22 79 1.80e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92732.t1 AT3G07970 53.229 449 185 10 4 438 1 438 3.82e-155 447
MS.gene92732.t1 AT3G57510 46.528 432 213 7 13 438 11 430 5.04e-129 380
MS.gene92732.t1 AT2G41850 47.235 434 214 7 9 438 8 430 3.94e-120 357
MS.gene92732.t1 AT1G80170 45.758 389 205 4 53 436 33 420 6.42e-116 347
MS.gene92732.t1 AT1G70500 42.694 438 230 9 9 436 5 431 1.39e-107 326
MS.gene92732.t1 AT1G23460 44.855 379 204 4 61 436 31 407 1.40e-107 325
MS.gene92732.t1 AT1G23460 44.855 379 204 4 61 436 55 431 2.37e-107 325
MS.gene92732.t1 AT1G56710 42.553 376 184 9 61 411 29 397 7.50e-91 282
MS.gene92732.t1 AT5G14650 40.771 363 207 7 51 411 30 386 3.29e-88 275
MS.gene92732.t1 AT4G35670 42.857 364 193 7 74 431 25 379 6.49e-87 271
MS.gene92732.t1 AT2G43890 37.750 400 233 10 41 437 3 389 1.53e-85 267
MS.gene92732.t1 AT5G27530 42.897 359 182 6 74 426 54 395 1.68e-85 269
MS.gene92732.t1 AT5G44840 39.833 359 202 6 74 426 25 375 1.03e-83 262
MS.gene92732.t1 AT3G15720 41.848 368 192 9 69 426 19 374 1.93e-83 264
MS.gene92732.t1 AT1G05660 39.418 378 218 9 63 436 18 388 2.23e-83 261
MS.gene92732.t1 AT3G15720 41.848 368 192 9 69 426 20 375 2.30e-83 263
MS.gene92732.t1 AT4G18180 39.323 384 209 8 73 436 39 418 1.57e-82 260
MS.gene92732.t1 AT1G05650 39.344 366 213 8 74 436 29 388 6.52e-82 258
MS.gene92732.t1 AT2G43870 41.223 376 206 13 69 438 17 383 7.39e-82 257
MS.gene92732.t1 AT1G02460 41.783 359 181 9 74 411 90 441 1.14e-81 260
MS.gene92732.t1 AT2G43860 42.532 395 207 13 51 439 18 398 1.75e-81 257
MS.gene92732.t1 AT3G15720 41.417 367 192 9 69 426 19 371 4.14e-81 258
MS.gene92732.t1 AT2G43880 40.000 375 215 9 66 437 24 391 1.38e-80 254
MS.gene92732.t1 AT3G59850 41.509 371 203 12 72 436 66 428 1.56e-80 255
MS.gene92732.t1 AT1G80170 46.071 280 146 3 53 328 33 311 1.89e-80 252
MS.gene92732.t1 AT3G59850 41.509 371 203 12 72 436 22 384 2.13e-80 254
MS.gene92732.t1 AT3G26610 35.981 428 245 10 1 415 1 412 3.59e-79 253
MS.gene92732.t1 AT1G80140 40.708 339 186 7 108 439 6 336 4.60e-79 248
MS.gene92732.t1 AT1G48100 37.640 356 201 7 74 414 81 430 1.59e-77 249
MS.gene92732.t1 AT1G10640 39.071 366 193 6 74 411 120 483 7.65e-77 249
MS.gene92732.t1 AT1G60590 36.585 369 201 6 74 411 124 490 8.35e-77 249
MS.gene92732.t1 AT3G15720 43.438 320 163 7 114 426 3 311 1.39e-76 244
MS.gene92732.t1 AT4G01890 37.666 377 209 8 61 417 53 423 4.41e-76 245
MS.gene92732.t1 AT1G65570 37.701 374 222 9 68 436 26 393 9.47e-76 242
MS.gene92732.t1 AT1G02790 34.554 437 236 12 17 438 19 420 1.19e-75 243
MS.gene92732.t1 AT4G32380 38.857 350 199 7 73 414 26 368 1.46e-75 243
MS.gene92732.t1 AT3G07830 38.122 362 212 8 82 437 30 385 5.36e-75 240
MS.gene92732.t1 AT2G33160 38.308 402 230 10 44 436 7 399 6.66e-75 247
MS.gene92732.t1 AT5G48140 37.366 372 220 8 72 437 20 384 1.21e-74 239
MS.gene92732.t1 AT4G13760 37.783 397 225 11 52 437 15 400 2.01e-74 239
MS.gene92732.t1 AT4G35670 47.893 261 128 2 152 412 1 253 3.10e-74 234
MS.gene92732.t1 AT5G44830 39.385 325 178 4 104 426 9 316 5.91e-74 235
MS.gene92732.t1 AT5G17200 38.211 369 194 7 69 413 35 393 2.71e-73 236
MS.gene92732.t1 AT2G40310 37.028 397 228 11 52 437 15 400 1.10e-72 234
MS.gene92732.t1 AT3G07820 37.097 372 222 8 72 437 19 384 2.39e-72 233
MS.gene92732.t1 AT1G17150 38.482 369 216 8 74 436 34 397 8.84e-72 232
MS.gene92732.t1 AT1G43080 36.725 403 233 11 46 437 9 400 1.30e-71 231
MS.gene92732.t1 AT3G07840 36.461 373 223 8 72 437 20 385 2.40e-70 228
MS.gene92732.t1 AT1G43090 36.683 398 230 11 46 432 9 395 2.46e-70 229
MS.gene92732.t1 AT2G15460 36.456 395 229 11 54 437 17 400 1.29e-69 226
MS.gene92732.t1 AT1G43100 36.683 398 230 11 46 432 9 395 5.15e-69 226
MS.gene92732.t1 AT2G15450 36.272 397 230 12 54 438 17 402 9.87e-69 224
MS.gene92732.t1 AT1G78400 36.915 363 218 8 70 426 32 389 5.97e-68 222
MS.gene92732.t1 AT3G07850 39.130 368 216 7 73 436 70 433 1.41e-67 222
MS.gene92732.t1 AT3G14040 38.753 369 218 7 72 436 70 434 2.80e-67 221
MS.gene92732.t1 AT2G15470 35.949 395 231 11 54 437 17 400 5.01e-67 219
MS.gene92732.t1 AT2G26620 36.461 373 222 9 74 437 32 398 2.62e-65 215
MS.gene92732.t1 AT4G32375 40.433 277 156 3 149 423 9 278 5.20e-63 209
MS.gene92732.t1 AT4G32370 38.312 308 170 8 68 363 29 328 1.35e-62 206
MS.gene92732.t1 AT5G14650 39.286 280 164 5 51 328 30 305 2.24e-62 204
MS.gene92732.t1 AT2G43880 40.000 305 174 8 66 367 24 322 3.16e-61 202
MS.gene92732.t1 AT4G32380 35.057 348 174 7 73 414 26 327 7.58e-60 201
MS.gene92732.t1 AT5G39910 30.928 388 190 6 71 437 34 364 6.74e-53 182
MS.gene92732.t1 AT3G42950 28.212 397 241 13 74 436 67 453 4.74e-27 113
MS.gene92732.t1 AT3G62110 26.329 414 250 15 48 426 27 420 8.24e-26 109
MS.gene92732.t1 AT3G62110 26.329 414 250 15 48 426 27 420 8.24e-26 109
MS.gene92732.t1 AT4G23820 26.633 398 248 12 63 427 31 417 3.97e-24 104
MS.gene92732.t1 AT1G19170 24.678 466 290 16 12 437 32 476 6.79e-24 104
MS.gene92732.t1 AT2G23900 26.199 271 173 8 158 411 158 418 6.74e-19 89.4
MS.gene92732.t1 AT3G48950 25.168 298 188 9 140 411 119 407 1.30e-18 88.2
MS.gene92732.t1 AT4G33440 27.036 307 185 10 154 438 170 459 1.92e-18 87.8
MS.gene92732.t1 AT5G41870 24.806 387 242 13 63 413 35 408 5.56e-18 86.3
MS.gene92732.t1 AT5G49215 27.715 267 169 6 161 412 146 403 2.57e-17 84.3
MS.gene92732.t1 AT5G49215 27.715 267 169 6 161 412 148 405 2.66e-17 84.3
MS.gene92732.t1 AT3G06770 27.157 313 195 8 147 440 47 345 1.03e-16 81.6
MS.gene92732.t1 AT3G06770 27.157 313 195 8 147 440 65 363 2.01e-16 80.9
MS.gene92732.t1 AT3G06770 27.157 313 195 8 147 440 65 363 2.01e-16 80.9
MS.gene92732.t1 AT4G23500 26.050 238 155 6 158 381 170 400 2.59e-16 81.3
MS.gene92732.t1 AT3G16850 24.832 298 194 8 147 427 131 415 2.71e-16 81.3
MS.gene92732.t1 AT3G06770 27.157 313 195 8 147 440 134 432 3.90e-16 80.5
MS.gene92732.t1 AT3G06770 27.157 313 195 8 147 440 135 433 4.09e-16 80.5
MS.gene92732.t1 AT3G61490 23.750 320 221 7 131 433 229 542 1.12e-15 79.7
MS.gene92732.t1 AT3G61490 23.750 320 221 7 131 433 131 444 1.16e-15 79.3
MS.gene92732.t1 AT3G61490 23.750 320 221 7 131 433 116 429 1.90e-15 78.6
MS.gene92732.t1 AT3G61490 23.750 320 221 7 131 433 116 429 1.90e-15 78.6
MS.gene92732.t1 AT3G61490 23.750 320 221 7 131 433 116 429 1.90e-15 78.6

Find 87 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAACCCAATACTGCATTAA+AGG 0.186184 3.1:+22647506 MS.gene92732:CDS
GCCTCATTTGGTTTGTGTTT+TGG 0.200442 3.1:+22646868 MS.gene92732:CDS
CAAACCAAATGAGGCTAAAA+TGG 0.240282 3.1:-22646860 None:intergenic
GTTTCATTATGTTAGATCTA+TGG 0.262928 3.1:+22647616 MS.gene92732:intron
ATCTAAATGCAGGGAGGTTC+TGG 0.263116 3.1:+22650121 MS.gene92732:intron
CATGGCCCTGAAAATGTTAT+AGG 0.267346 3.1:-22647483 None:intergenic
GCTCCATATGCTGAAATATT+AGG 0.274821 3.1:-22647655 None:intergenic
TTGAAGGATGCAACAATGTT+TGG 0.280649 3.1:+22648500 MS.gene92732:CDS
ACATGAACAATTTAGTTTCA+TGG 0.283475 3.1:+22646960 MS.gene92732:CDS
TTTACCTTTAATGCAGTATT+GGG 0.302256 3.1:-22647510 None:intergenic
GTGATGTACCAAAACATAAA+AGG 0.305023 3.1:+22650781 MS.gene92732:CDS
AACTTGTCCATCATTAGATT+TGG 0.311900 3.1:-22647055 None:intergenic
ATGCACAACAAATGCATATA+AGG 0.313150 3.1:+22648476 MS.gene92732:CDS
AAACTAAATTGTTCATGTAT+TGG 0.329621 3.1:-22646955 None:intergenic
GATGGTGGTGGTACCATTAA+TGG 0.331489 3.1:+22647727 MS.gene92732:CDS
AATATTAGGCCATGCTTTGA+TGG 0.334356 3.1:-22647641 None:intergenic
GTGAACAGAGCCACACTAAT+AGG 0.355997 3.1:+22649418 MS.gene92732:CDS
CTTTATTCTGACTCCATTAG+TGG 0.361879 3.1:-22649443 None:intergenic
ATTTACCTTTAATGCAGTAT+TGG 0.379250 3.1:-22647511 None:intergenic
ATAATTAACATTGTCACATT+TGG 0.385288 3.1:-22650917 None:intergenic
AGATGATAGACACTATGTTT+AGG 0.399830 3.1:-22647456 None:intergenic
TGCGGCGAAGGCGCGATAGA+TGG 0.401102 3.1:-22646997 None:intergenic
TGAAGGATGCAACAATGTTT+GGG 0.406265 3.1:+22648501 MS.gene92732:CDS
ACGGTTAACGTTGACGACTA+TGG 0.411063 3.1:+22647030 MS.gene92732:CDS
TGGCCTAATATTTCAGCATA+TGG 0.414557 3.1:+22647652 MS.gene92732:CDS
TTCACCAACCTCTCATTGTA+AGG 0.419899 3.1:-22646931 None:intergenic
AATGTTAATTATTCAAATAG+TGG 0.428526 3.1:+22650928 MS.gene92732:CDS
GTGGACCAGGACATGGAATC+AGG 0.439750 3.1:+22649208 MS.gene92732:CDS
TTATGAAAACATTCTCTGAA+TGG 0.443046 3.1:-22648585 None:intergenic
GGTGGTACCATTAATGGAAA+TGG 0.446333 3.1:+22647733 MS.gene92732:CDS
TATGAAAACATTCTCTGAAT+GGG 0.447211 3.1:-22648584 None:intergenic
TTTGTTCATGGGTAACACTT+AGG 0.447678 3.1:-22650961 None:intergenic
TTCATAACCAACAGCACCAT+TGG 0.449118 3.1:+22648601 MS.gene92732:CDS
ACACTAATAGGAACCACTAA+TGG 0.455342 3.1:+22649430 MS.gene92732:CDS
CAAATGCATATAAGGATTGA+AGG 0.456482 3.1:+22648484 MS.gene92732:CDS
CCTTTAATGCAGTATTGGGT+TGG 0.462412 3.1:-22647506 None:intergenic
TTGGCTCTTACTTAGAAGAA+AGG 0.465871 3.1:+22646887 MS.gene92732:CDS
TGGAATGAGGCATGTTCTAA+AGG 0.468725 3.1:+22647417 MS.gene92732:CDS
TTTAGGCATTTGAAATGTCA+TGG 0.469564 3.1:+22647397 MS.gene92732:intron
ACCTGTCCCAATGGTGCTGT+TGG 0.469575 3.1:-22648608 None:intergenic
AACAATTTAGTTTCATGGCA+AGG 0.470742 3.1:+22646965 MS.gene92732:CDS
GTCACAGATCTCATAGTTGA+TGG 0.474884 3.1:+22647709 MS.gene92732:CDS
ATGGAGCAGATAGAAAGCTT+TGG 0.483983 3.1:+22647671 MS.gene92732:CDS
TCAGTGTTGGGACTGTGTCC+TGG 0.491323 3.1:-22648547 None:intergenic
GGAATGAGGCATGTTCTAAA+GGG 0.495884 3.1:+22647418 MS.gene92732:CDS
TCATAACCAACAGCACCATT+GGG 0.496240 3.1:+22648602 MS.gene92732:CDS
TGCAAGTGAACTCCTTTGCA+TGG 0.498082 3.1:-22650853 None:intergenic
ATATGAATTCCATCAGTGTT+GGG 0.505639 3.1:-22648559 None:intergenic
ACAATTTAGTTTCATGGCAA+GGG 0.511066 3.1:+22646966 MS.gene92732:CDS
AACATTGTCACATTTGGCAG+TGG 0.514203 3.1:-22650911 None:intergenic
AATATGAATTCCATCAGTGT+TGG 0.516408 3.1:-22648560 None:intergenic
TCTAGCATTGGAAGCTTAGG+AGG 0.516638 3.1:+22649361 MS.gene92732:intron
ATTGTATTTCAATTGTAAGT+GGG 0.522080 3.1:+22649154 MS.gene92732:CDS
TGAATGCAATAATTTGAAAG+TGG 0.522545 3.1:+22648435 MS.gene92732:CDS
ATGAACCTGATTCCATGTCC+TGG 0.522587 3.1:-22649213 None:intergenic
AATGCAGTATTGGGTTGGCA+TGG 0.531497 3.1:-22647501 None:intergenic
GATTGTATTTCAATTGTAAG+TGG 0.534722 3.1:+22649153 MS.gene92732:CDS
ATTTGAAATGTCATGGAATG+AGG 0.544227 3.1:+22647404 MS.gene92732:CDS
ACCAACAGCACCATTGGGAC+AGG 0.545836 3.1:+22648607 MS.gene92732:CDS
TTTATTTCACAGCCATGCAA+GGG 0.548985 3.1:+22648287 MS.gene92732:intron
TATGGAGCCAAATCTAATGA+TGG 0.549828 3.1:+22647048 MS.gene92732:CDS
TTCTAAAGGGAAGGTTCTTG+TGG 0.553586 3.1:+22647431 MS.gene92732:CDS
ATTAGTGGTTCCTATTAGTG+TGG 0.555263 3.1:-22649428 None:intergenic
GCAAGTGAACTCCTTTGCAT+GGG 0.556459 3.1:-22650852 None:intergenic
GATGTGAAATTAACAGCAGA+AGG 0.561167 3.1:+22650877 MS.gene92732:CDS
TGATGGACAAGTTGATAATG+AGG 0.564129 3.1:+22647065 MS.gene92732:CDS
AGTCAGAATAAAGACTTGGC+AGG 0.564393 3.1:+22649453 MS.gene92732:CDS
GCCAAAACACAAACCAAATG+AGG 0.566883 3.1:-22646869 None:intergenic
CGAGCAACAGATATTACTTG+TGG 0.574897 3.1:+22649189 MS.gene92732:CDS
TCAACCTTACAATGAGAGGT+TGG 0.581966 3.1:+22646927 MS.gene92732:CDS
AATCTAATAGTCACAGCACC+AGG 0.584074 3.1:+22648529 MS.gene92732:CDS
GGACACAGTCCCAACACTGA+TGG 0.584378 3.1:+22648550 MS.gene92732:CDS
ATTACTTGTGGACCAGGACA+TGG 0.589105 3.1:+22649201 MS.gene92732:CDS
ATCATCAACCTTACAATGAG+AGG 0.592562 3.1:+22646923 MS.gene92732:CDS
GATCTCATAGTTGATGGTGG+TGG 0.596400 3.1:+22647715 MS.gene92732:CDS
AGCATTGGAAGCTTAGGAGG+AGG 0.597724 3.1:+22649364 MS.gene92732:intron
AGCAAAGCTGTCCCATGCAA+AGG 0.601502 3.1:+22650841 MS.gene92732:CDS
ACAGATATTACTTGTGGACC+AGG 0.610780 3.1:+22649195 MS.gene92732:CDS
AGAAGCTGAAGTGTCTAATG+TGG 0.616234 3.1:+22649393 MS.gene92732:CDS
ATGGAGTCAGAATAAAGACT+TGG 0.619125 3.1:+22649449 MS.gene92732:CDS
TGAGGCATGTTCTAAAGGGA+AGG 0.623152 3.1:+22647422 MS.gene92732:CDS
TTATTTCACAGCCATGCAAG+GGG 0.654101 3.1:+22648288 MS.gene92732:intron
TCTATGGAACCATCAAAGCA+TGG 0.658530 3.1:+22647632 MS.gene92732:CDS
CAAATTGCAGAATTCAGCTG+TGG 0.663171 3.1:+22650747 MS.gene92732:intron
ACAGATCTCATAGTTGATGG+TGG 0.709690 3.1:+22647712 MS.gene92732:CDS
TTCGCCGCAATCTCAAAACA+CGG 0.711068 3.1:+22647011 MS.gene92732:CDS
TATTTCACAGCCATGCAAGG+GGG 0.733319 3.1:+22648289 MS.gene92732:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAATGAATAAAAACAT+GGG - chr3.1:22650501-22650520 None:intergenic 10.0%
!! ATTAGTTAAAAAATTTGATA+TGG + chr3.1:22649284-22649303 MS.gene92732:intron 10.0%
!! GCTATTTATTAAATAAATTA+AGG + chr3.1:22649486-22649505 MS.gene92732:intron 10.0%
!! TATTAAAATGAATAAAAACA+TGG - chr3.1:22650502-22650521 None:intergenic 10.0%
!!! AACAAAATAAATTTTTGAAA+AGG - chr3.1:22647962-22647981 None:intergenic 10.0%
!!! ATAATGGATTTTTTTTATAA+TGG + chr3.1:22649710-22649729 MS.gene92732:intron 10.0%
!!! ATTTATGCTTTTATAAAATT+TGG + chr3.1:22650609-22650628 MS.gene92732:intron 10.0%
!!! ATTTTGAATTTGTTAAATTA+AGG + chr3.1:22647851-22647870 MS.gene92732:intron 10.0%
!!! GATTATTATTTTTAATTGAT+TGG + chr3.1:22649308-22649327 MS.gene92732:intron 10.0%
!!! TATGGTTTATTTTATAATTT+TGG + chr3.1:22649606-22649625 MS.gene92732:intron 10.0%
!!! TTATTCAATTTAATTTTTCA+TGG + chr3.1:22648378-22648397 MS.gene92732:intron 10.0%
! CGCGGGGGGGGGGGGGGGGG+GGG - chr3.1:22650544-22650563 None:intergenic 100.0%
! CGGGGGGGGGGGGGGGGGGG+GGG - chr3.1:22650542-22650561 None:intergenic 100.0%
! GCGCGGGGGGGGGGGGGGGG+GGG - chr3.1:22650545-22650564 None:intergenic 100.0%
! GCGGGGGGGGGGGGGGGGGG+GGG - chr3.1:22650543-22650562 None:intergenic 100.0%
! GGCGCGGGGGGGGGGGGGGG+GGG - chr3.1:22650546-22650565 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+AGG - chr3.1:22650527-22650546 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr3.1:22650527-22650546 None:intergenic 100.0%
!! AAATTATAAAGTAAAAAGAG+TGG + chr3.1:22649518-22649537 MS.gene92732:intron 15.0%
!! AATGTTAATTATTCAAATAG+TGG + chr3.1:22650928-22650947 MS.gene92732:CDS 15.0%
!! AGGTAAATTAAAATGATTTA+TGG + chr3.1:22647526-22647545 MS.gene92732:intron 15.0%
!! GAAACTAAACAAATAAAAAA+AGG - chr3.1:22650567-22650586 None:intergenic 15.0%
!! GATTAAATGAATGAATTAAA+AGG - chr3.1:22647822-22647841 None:intergenic 15.0%
!! GCAAATAAACTAATAATAAA+TGG - chr3.1:22648163-22648182 None:intergenic 15.0%
!! TGAATCAAATTAAAATGATA+AGG - chr3.1:22648231-22648250 None:intergenic 15.0%
!! TTAAAATATTTATGTGATCA+AGG + chr3.1:22647233-22647252 MS.gene92732:intron 15.0%
!!! AATTAGTGATTTGAATTTTA+TGG + chr3.1:22648183-22648202 MS.gene92732:intron 15.0%
!!! AATTAGTTATTTTCTTTACT+TGG - chr3.1:22648015-22648034 None:intergenic 15.0%
!!! ATATTTTTGAGTTATGATTA+TGG - chr3.1:22650200-22650219 None:intergenic 15.0%
!!! ATGAGTTTTATATATTTAAG+TGG - chr3.1:22647568-22647587 None:intergenic 15.0%
!!! TATTTTTGAGTTATGATTAT+GGG - chr3.1:22650199-22650218 None:intergenic 15.0%
!!! TCCTCAATATTTTTATAATT+AGG + chr3.1:22648044-22648063 MS.gene92732:intron 15.0%
!!! TTTTTATTTGTTTAGTTTCA+TGG + chr3.1:22650568-22650587 MS.gene92732:intron 15.0%
!! AAACTAAATTGTTCATGTAT+TGG - chr3.1:22646958-22646977 None:intergenic 20.0%
!! ATAATTAACATTGTCACATT+TGG - chr3.1:22650920-22650939 None:intergenic 20.0%
!! ATACTATATATCTAAATGCA+GGG + chr3.1:22650112-22650131 MS.gene92732:intron 20.0%
!! ATTGGTTAAAAAATTTGATG+TGG + chr3.1:22649326-22649345 MS.gene92732:intron 20.0%
!! ATTGTATTTCAATTGTAAGT+GGG + chr3.1:22649154-22649173 MS.gene92732:CDS 20.0%
!! ATTTAAAGAGATAAAAAGAG+TGG - chr3.1:22650646-22650665 None:intergenic 20.0%
!! GATATTTGTTTCCATTTAAA+TGG + chr3.1:22647348-22647367 MS.gene92732:intron 20.0%
!! GCCTAATTATAAAAATATTG+AGG - chr3.1:22648048-22648067 None:intergenic 20.0%
!! GTTAAACTTCATGTTAATTT+AGG + chr3.1:22649628-22649647 MS.gene92732:intron 20.0%
!! TTAATGGAAATGGAAAAATA+TGG + chr3.1:22647743-22647762 MS.gene92732:CDS 20.0%
!!! ATGAAAATTTAACTTACTGT+TGG - chr3.1:22648317-22648336 None:intergenic 20.0%
!!! ATGCTTTTATAAAATTTGGT+TGG + chr3.1:22650613-22650632 MS.gene92732:intron 20.0%
!!! ATTTGAGTTAATATCATACA+AGG - chr3.1:22647798-22647817 None:intergenic 20.0%
!!! CAAATACACAATTTTACAAT+CGG - chr3.1:22647329-22647348 None:intergenic 20.0%
!!! TAATTATTGTTTTCTAGCAT+TGG + chr3.1:22649349-22649368 MS.gene92732:intron 20.0%
!!! TATTTTTCCATTTCCATTAA+TGG - chr3.1:22647743-22647762 None:intergenic 20.0%
!!! TGCTTTTATAAAATTTGGTT+GGG + chr3.1:22650614-22650633 MS.gene92732:intron 20.0%
!!! TTTTGAAAGATAAACGTTTT+TGG + chr3.1:22650071-22650090 MS.gene92732:intron 20.0%
! AAACTTTAACTAACCAAGTT+TGG + chr3.1:22649773-22649792 MS.gene92732:intron 25.0%
! AAAGGAGAGTAAAGAAATTA+TGG - chr3.1:22648269-22648288 None:intergenic 25.0%
! AAATTAACGAACAAAATCAG+AGG + chr3.1:22650313-22650332 MS.gene92732:intron 25.0%
! ACAAATTCAAAATCAATGCA+TGG - chr3.1:22647844-22647863 None:intergenic 25.0%
! ATATATTTAAGTGGACATTG+AGG - chr3.1:22647559-22647578 None:intergenic 25.0%
! ATCACTAATCACATTATGAT+TGG + chr3.1:22647274-22647293 MS.gene92732:intron 25.0%
! ATCATAATGTGATTAGTGAT+CGG - chr3.1:22647274-22647293 None:intergenic 25.0%
! ATTTACCTTTAATGCAGTAT+TGG - chr3.1:22647514-22647533 None:intergenic 25.0%
! ATTTGAGAACACCATTTAAA+TGG - chr3.1:22647362-22647381 None:intergenic 25.0%
! CATACTATATATCTAAATGC+AGG + chr3.1:22650111-22650130 MS.gene92732:intron 25.0%
! CTTCAAATTAGTTAAGAAGA+AGG - chr3.1:22649886-22649905 None:intergenic 25.0%
! GATTGTATTTCAATTGTAAG+TGG + chr3.1:22649153-22649172 MS.gene92732:CDS 25.0%
! GTTAATGTTCATCAAGTATA+TGG - chr3.1:22649953-22649972 None:intergenic 25.0%
! GTTTCATTATGTTAGATCTA+TGG + chr3.1:22647616-22647635 MS.gene92732:intron 25.0%
! TAAACAAATAAAAAAAGGCG+CGG - chr3.1:22650562-22650581 None:intergenic 25.0%
! TATATTTAAGTGGACATTGA+GGG - chr3.1:22647558-22647577 None:intergenic 25.0%
! TATGAAAACATTCTCTGAAT+GGG - chr3.1:22648587-22648606 None:intergenic 25.0%
! TGAATGCAATAATTTGAAAG+TGG + chr3.1:22648435-22648454 MS.gene92732:CDS 25.0%
! TGCATTAGCACTATTATATT+GGG + chr3.1:22649662-22649681 MS.gene92732:intron 25.0%
! TTATGAAAACATTCTCTGAA+TGG - chr3.1:22648588-22648607 None:intergenic 25.0%
! TTGTAAAATCGTGTATTTGT+TGG + chr3.1:22647302-22647321 MS.gene92732:intron 25.0%
! TTTACCTTTAATGCAGTATT+GGG - chr3.1:22647513-22647532 None:intergenic 25.0%
!! ACATGAACAATTTAGTTTCA+TGG + chr3.1:22646960-22646979 MS.gene92732:CDS 25.0%
!! CAAATACACGATTTTACAAT+CGG - chr3.1:22647301-22647320 None:intergenic 25.0%
!! TAAAGCCTATAACATTTTCA+GGG + chr3.1:22647478-22647497 MS.gene92732:CDS 25.0%
!! TATTTTACCAAATCATCTCA+AGG + chr3.1:22649571-22649590 MS.gene92732:intron 25.0%
!! TGTTAATTTAGGACCAAATT+AGG + chr3.1:22649639-22649658 MS.gene92732:intron 25.0%
!! TTGACATGTTTGAAGTAATA+AGG - chr3.1:22649827-22649846 None:intergenic 25.0%
!!! ATTTCTCATTTTTGCACTTT+AGG + chr3.1:22647380-22647399 MS.gene92732:intron 25.0%
!!! GGAAAATTTGTTGCATATAT+AGG + chr3.1:22648399-22648418 MS.gene92732:intron 25.0%
!!! TTAAGACAAGAAGTCATTTT+AGG + chr3.1:22649018-22649037 MS.gene92732:intron 25.0%
AAAAAAGAAATGTCAAGAGC+AGG + chr3.1:22650228-22650247 MS.gene92732:CDS 30.0%
AACTTGTCCATCATTAGATT+TGG - chr3.1:22647058-22647077 None:intergenic 30.0%
AATATGAATTCCATCAGTGT+TGG - chr3.1:22648563-22648582 None:intergenic 30.0%
AATGAATAAAAACATGGGCT+TGG - chr3.1:22650496-22650515 None:intergenic 30.0%
AATGTTACATGGACTCATAA+TGG + chr3.1:22649694-22649713 MS.gene92732:intron 30.0%
AATTTAGCGAAAACAATGTG+TGG + chr3.1:22647089-22647108 MS.gene92732:intron 30.0%
AGATGATAGACACTATGTTT+AGG - chr3.1:22647459-22647478 None:intergenic 30.0%
ATATGAATTCCATCAGTGTT+GGG - chr3.1:22648562-22648581 None:intergenic 30.0%
ATGCACAACAAATGCATATA+AGG + chr3.1:22648476-22648495 MS.gene92732:CDS 30.0%
ATGGAAATGGAAAAATATGG+TGG + chr3.1:22647746-22647765 MS.gene92732:CDS 30.0%
ATTATGAGTCCATGTAACAT+TGG - chr3.1:22649695-22649714 None:intergenic 30.0%
CAAATGCATATAAGGATTGA+AGG + chr3.1:22648484-22648503 MS.gene92732:CDS 30.0%
GAAGTAATAAGGTTAGAAAC+TGG - chr3.1:22649816-22649835 None:intergenic 30.0%
GTGATGTACCAAAACATAAA+AGG + chr3.1:22650781-22650800 MS.gene92732:CDS 30.0%
GTGCATTAGCACTATTATAT+TGG + chr3.1:22649661-22649680 MS.gene92732:intron 30.0%
TAGACCTAAAACTCAAGTTT+AGG - chr3.1:22650345-22650364 None:intergenic 30.0%
TCAAGGACTTCAAGTAAATA+TGG + chr3.1:22649588-22649607 MS.gene92732:intron 30.0%
TGGAAATGGAAAAATATGGT+GGG + chr3.1:22647747-22647766 MS.gene92732:CDS 30.0%
TTGAATGTCACTCTACAAAA+CGG - chr3.1:22647207-22647226 None:intergenic 30.0%
! AAACAAATAAAAAAAGGCGC+GGG - chr3.1:22650561-22650580 None:intergenic 30.0%
! AACAATTTAGTTTCATGGCA+AGG + chr3.1:22646965-22646984 MS.gene92732:CDS 30.0%
! ACAACCTAAACTTGAGTTTT+AGG + chr3.1:22650338-22650357 MS.gene92732:intron 30.0%
! ACAATTTAGTTTCATGGCAA+GGG + chr3.1:22646966-22646985 MS.gene92732:CDS 30.0%
! ATTTGAAATGTCATGGAATG+AGG + chr3.1:22647404-22647423 MS.gene92732:CDS 30.0%
! CACTTGTTCCTTTTATGTTT+TGG - chr3.1:22650792-22650811 None:intergenic 30.0%
! CTAAAGCCTATAACATTTTC+AGG + chr3.1:22647477-22647496 MS.gene92732:CDS 30.0%
! TTTAGGCATTTGAAATGTCA+TGG + chr3.1:22647397-22647416 MS.gene92732:intron 30.0%
!!! GCTCTTGACATTTCTTTTTT+TGG - chr3.1:22650228-22650247 None:intergenic 30.0%
AATATTAGGCCATGCTTTGA+TGG - chr3.1:22647644-22647663 None:intergenic 35.0%
ACACTAATAGGAACCACTAA+TGG + chr3.1:22649430-22649449 MS.gene92732:CDS 35.0%
AGACTTGGCAGGTAAATTTA+TGG + chr3.1:22649464-22649483 MS.gene92732:intron 35.0%
ATCATCAACCTTACAATGAG+AGG + chr3.1:22646923-22646942 MS.gene92732:CDS 35.0%
ATGGAGTCAGAATAAAGACT+TGG + chr3.1:22649449-22649468 MS.gene92732:CDS 35.0%
ATTAGTGGTTCCTATTAGTG+TGG - chr3.1:22649431-22649450 None:intergenic 35.0%
ATTCCTCACTATGTCTGTTA+AGG + chr3.1:22649126-22649145 MS.gene92732:intron 35.0%
CAAACCAAATGAGGCTAAAA+TGG - chr3.1:22646863-22646882 None:intergenic 35.0%
CTATATATCTAAATGCAGGG+AGG + chr3.1:22650115-22650134 MS.gene92732:intron 35.0%
CTTTATTCTGACTCCATTAG+TGG - chr3.1:22649446-22649465 None:intergenic 35.0%
CTTTGTAAACTTGCCAAACT+TGG - chr3.1:22649789-22649808 None:intergenic 35.0%
GATGTGAAATTAACAGCAGA+AGG + chr3.1:22650877-22650896 MS.gene92732:CDS 35.0%
GCTCCATATGCTGAAATATT+AGG - chr3.1:22647658-22647677 None:intergenic 35.0%
TAGTGCTAATGCACCTAATT+TGG - chr3.1:22649655-22649674 None:intergenic 35.0%
TATAGAGCAACACATGATGT+GGG + chr3.1:22650387-22650406 MS.gene92732:intron 35.0%
TATGGAGCCAAATCTAATGA+TGG + chr3.1:22647048-22647067 MS.gene92732:CDS 35.0%
TGAAGGATGCAACAATGTTT+GGG + chr3.1:22648501-22648520 MS.gene92732:CDS 35.0%
TGGCCTAATATTTCAGCATA+TGG + chr3.1:22647652-22647671 MS.gene92732:CDS 35.0%
TTGAAGGATGCAACAATGTT+TGG + chr3.1:22648500-22648519 MS.gene92732:CDS 35.0%
TTGAAGTCCTTGAGATGATT+TGG - chr3.1:22649581-22649600 None:intergenic 35.0%
TTGCATGGCTGTGAAATAAA+AGG - chr3.1:22648287-22648306 None:intergenic 35.0%
TTTATTTCACAGCCATGCAA+GGG + chr3.1:22648287-22648306 MS.gene92732:intron 35.0%
! AACAAATAAAAAAAGGCGCG+GGG - chr3.1:22650560-22650579 None:intergenic 35.0%
! ATCTGTTGCTCGAACATTTT+TGG - chr3.1:22649181-22649200 None:intergenic 35.0%
! TATCTTTTTACCTGTCCCAA+TGG - chr3.1:22648620-22648639 None:intergenic 35.0%
! TTGGCTCTTACTTAGAAGAA+AGG + chr3.1:22646887-22646906 MS.gene92732:CDS 35.0%
!! TGATGGACAAGTTGATAATG+AGG + chr3.1:22647065-22647084 MS.gene92732:CDS 35.0%
!! TTCACCATTTTAGCCTCATT+TGG + chr3.1:22646856-22646875 MS.gene92732:CDS 35.0%
!! TTTTATTTCACAGCCATGCA+AGG + chr3.1:22648286-22648305 MS.gene92732:intron 35.0%
!! TTTTCTAGCATTGGAAGCTT+AGG + chr3.1:22649358-22649377 MS.gene92732:intron 35.0%
!!! TTAACCGTGTTTTGAGATTG+CGG - chr3.1:22647018-22647037 None:intergenic 35.0%
AACATTGTCACATTTGGCAG+TGG - chr3.1:22650914-22650933 None:intergenic 40.0%
AATCTAATAGTCACAGCACC+AGG + chr3.1:22648529-22648548 MS.gene92732:CDS 40.0%
ACAGATATTACTTGTGGACC+AGG + chr3.1:22649195-22649214 MS.gene92732:CDS 40.0%
AGTCAGAATAAAGACTTGGC+AGG + chr3.1:22649453-22649472 MS.gene92732:CDS 40.0%
ATAGAGCAACACATGATGTG+GGG + chr3.1:22650388-22650407 MS.gene92732:intron 40.0%
ATGGAGCAGATAGAAAGCTT+TGG + chr3.1:22647671-22647690 MS.gene92732:CDS 40.0%
CAAATTGCAGAATTCAGCTG+TGG + chr3.1:22650747-22650766 MS.gene92732:intron 40.0%
CATGGCCCTGAAAATGTTAT+AGG - chr3.1:22647486-22647505 None:intergenic 40.0%
CCAACCCAATACTGCATTAA+AGG + chr3.1:22647506-22647525 MS.gene92732:CDS 40.0%
CGAGCAACAGATATTACTTG+TGG + chr3.1:22649189-22649208 MS.gene92732:CDS 40.0%
GCCAAAACACAAACCAAATG+AGG - chr3.1:22646872-22646891 None:intergenic 40.0%
GGAAGTTGACCAATGTTACA+TGG + chr3.1:22649683-22649702 MS.gene92732:intron 40.0%
GGTGGTACCATTAATGGAAA+TGG + chr3.1:22647733-22647752 MS.gene92732:CDS 40.0%
GTATAGAGCAACACATGATG+TGG + chr3.1:22650386-22650405 MS.gene92732:intron 40.0%
GTCACAGATCTCATAGTTGA+TGG + chr3.1:22647709-22647728 MS.gene92732:CDS 40.0%
TCAACCTTACAATGAGAGGT+TGG + chr3.1:22646927-22646946 MS.gene92732:CDS 40.0%
TCACCTTAACAGACATAGTG+AGG - chr3.1:22649132-22649151 None:intergenic 40.0%
TCATAACCAACAGCACCATT+GGG + chr3.1:22648602-22648621 MS.gene92732:CDS 40.0%
TCTATGGAACCATCAAAGCA+TGG + chr3.1:22647632-22647651 MS.gene92732:CDS 40.0%
TGGAATGAGGCATGTTCTAA+AGG + chr3.1:22647417-22647436 MS.gene92732:CDS 40.0%
TGTGATTAGTGATCGGAACA+AGG - chr3.1:22647267-22647286 None:intergenic 40.0%
TTATTTCACAGCCATGCAAG+GGG + chr3.1:22648288-22648307 MS.gene92732:intron 40.0%
TTCACCAACCTCTCATTGTA+AGG - chr3.1:22646934-22646953 None:intergenic 40.0%
TTCAGAGCAACACAAGATGT+GGG + chr3.1:22650412-22650431 MS.gene92732:intron 40.0%
TTCATAACCAACAGCACCAT+TGG + chr3.1:22648601-22648620 MS.gene92732:CDS 40.0%
TTTCAGAGCAACACAAGATG+TGG + chr3.1:22650411-22650430 MS.gene92732:intron 40.0%
! ACAAATAAAAAAAGGCGCGG+GGG - chr3.1:22650559-22650578 None:intergenic 40.0%
! AGAAGCTGAAGTGTCTAATG+TGG + chr3.1:22649393-22649412 MS.gene92732:CDS 40.0%
! CCTTTAATGCAGTATTGGGT+TGG - chr3.1:22647509-22647528 None:intergenic 40.0%
! GGAATGAGGCATGTTCTAAA+GGG + chr3.1:22647418-22647437 MS.gene92732:CDS 40.0%
! TTCTAAAGGGAAGGTTCTTG+TGG + chr3.1:22647431-22647450 MS.gene92732:CDS 40.0%
!! ACAGATCTCATAGTTGATGG+TGG + chr3.1:22647712-22647731 MS.gene92732:CDS 40.0%
!!! GCCTCATTTGGTTTGTGTTT+TGG + chr3.1:22646868-22646887 MS.gene92732:CDS 40.0%
ACGGTTAACGTTGACGACTA+TGG + chr3.1:22647030-22647049 MS.gene92732:CDS 45.0%
ATCTAAATGCAGGGAGGTTC+TGG + chr3.1:22650121-22650140 MS.gene92732:intron 45.0%
ATGAACCTGATTCCATGTCC+TGG - chr3.1:22649216-22649235 None:intergenic 45.0%
ATTACTTGTGGACCAGGACA+TGG + chr3.1:22649201-22649220 MS.gene92732:CDS 45.0%
GCAAGTGAACTCCTTTGCAT+GGG - chr3.1:22650855-22650874 None:intergenic 45.0%
GTGAACAGAGCCACACTAAT+AGG + chr3.1:22649418-22649437 MS.gene92732:CDS 45.0%
TATTTCACAGCCATGCAAGG+GGG + chr3.1:22648289-22648308 MS.gene92732:intron 45.0%
TCAGAGCAACACAAGATGTG+GGG + chr3.1:22650413-22650432 MS.gene92732:intron 45.0%
TGCAAGTGAACTCCTTTGCA+TGG - chr3.1:22650856-22650875 None:intergenic 45.0%
TTCGCCGCAATCTCAAAACA+CGG + chr3.1:22647011-22647030 MS.gene92732:CDS 45.0%
! AAATAAAAAAAGGCGCGGGG+GGG - chr3.1:22650557-22650576 None:intergenic 45.0%
! CAAATAAAAAAAGGCGCGGG+GGG - chr3.1:22650558-22650577 None:intergenic 45.0%
! TCTAGCATTGGAAGCTTAGG+AGG + chr3.1:22649361-22649380 MS.gene92732:intron 45.0%
!! AATGCAGTATTGGGTTGGCA+TGG - chr3.1:22647504-22647523 None:intergenic 45.0%
!! GATCTCATAGTTGATGGTGG+TGG + chr3.1:22647715-22647734 MS.gene92732:CDS 45.0%
!! GATGGTGGTGGTACCATTAA+TGG + chr3.1:22647727-22647746 MS.gene92732:CDS 45.0%
!! TGAGGCATGTTCTAAAGGGA+AGG + chr3.1:22647422-22647441 MS.gene92732:CDS 45.0%
!! AAATAAAAAATTAAATTAAG+TGG - chr3.1:22649556-22649575 None:intergenic 5.0%
!! AAATTTATTTACAAATTAAA+AGG - chr3.1:22648074-22648093 None:intergenic 5.0%
!! AACTATTTATTATTATTTAT+TGG - chr3.1:22649080-22649099 None:intergenic 5.0%
!! AATAAAAAATTAAATTAAGT+GGG - chr3.1:22649555-22649574 None:intergenic 5.0%
!! ACTATTTATTATTATTTATT+GGG - chr3.1:22649079-22649098 None:intergenic 5.0%
AGCAAAGCTGTCCCATGCAA+AGG + chr3.1:22650841-22650860 MS.gene92732:CDS 50.0%
CAGAGCAACACAAGATGTGG+GGG + chr3.1:22650414-22650433 MS.gene92732:intron 50.0%
! AATAAAAAAAGGCGCGGGGG+GGG - chr3.1:22650556-22650575 None:intergenic 50.0%
! AGCATTGGAAGCTTAGGAGG+AGG + chr3.1:22649364-22649383 MS.gene92732:intron 50.0%
!!! GTGTTTTGAGATTGCGGCGA+AGG - chr3.1:22647012-22647031 None:intergenic 50.0%
ACCAACAGCACCATTGGGAC+AGG + chr3.1:22648607-22648626 MS.gene92732:CDS 55.0%
GGACACAGTCCCAACACTGA+TGG + chr3.1:22648550-22648569 MS.gene92732:CDS 55.0%
GTGGACCAGGACATGGAATC+AGG + chr3.1:22649208-22649227 MS.gene92732:CDS 55.0%
! ATAAAAAAAGGCGCGGGGGG+GGG - chr3.1:22650555-22650574 None:intergenic 55.0%
! TCAGTGTTGGGACTGTGTCC+TGG - chr3.1:22648550-22648569 None:intergenic 55.0%
!! ACCTGTCCCAATGGTGCTGT+TGG - chr3.1:22648611-22648630 None:intergenic 55.0%
! ACTGTTGGTGCCCCCTTGCA+TGG - chr3.1:22648302-22648321 None:intergenic 60.0%
! TAAAAAAAGGCGCGGGGGGG+GGG - chr3.1:22650554-22650573 None:intergenic 60.0%
! AAAAAAAGGCGCGGGGGGGG+GGG - chr3.1:22650553-22650572 None:intergenic 65.0%
! TGCGGCGAAGGCGCGATAGA+TGG - chr3.1:22647000-22647019 None:intergenic 65.0%
! AAAAAAGGCGCGGGGGGGGG+GGG - chr3.1:22650552-22650571 None:intergenic 70.0%
! AAAAAGGCGCGGGGGGGGGG+GGG - chr3.1:22650551-22650570 None:intergenic 75.0%
!! AAAAGGCGCGGGGGGGGGGG+GGG - chr3.1:22650550-22650569 None:intergenic 80.0%
!! AAAGGCGCGGGGGGGGGGGG+GGG - chr3.1:22650549-22650568 None:intergenic 85.0%
! AAGGCGCGGGGGGGGGGGGG+GGG - chr3.1:22650548-22650567 None:intergenic 90.0%
! AGGCGCGGGGGGGGGGGGGG+GGG - chr3.1:22650547-22650566 None:intergenic 95.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 22646817 22650978 22646817 ID=MS.gene92732
chr3.1 mRNA 22646817 22650978 22646817 ID=MS.gene92732.t1;Parent=MS.gene92732
chr3.1 exon 22646817 22647086 22646817 ID=MS.gene92732.t1.exon1;Parent=MS.gene92732.t1
chr3.1 CDS 22646817 22647086 22646817 ID=cds.MS.gene92732.t1;Parent=MS.gene92732.t1
chr3.1 exon 22647402 22647527 22647402 ID=MS.gene92732.t1.exon2;Parent=MS.gene92732.t1
chr3.1 CDS 22647402 22647527 22647402 ID=cds.MS.gene92732.t1;Parent=MS.gene92732.t1
chr3.1 exon 22647631 22647798 22647631 ID=MS.gene92732.t1.exon3;Parent=MS.gene92732.t1
chr3.1 CDS 22647631 22647798 22647631 ID=cds.MS.gene92732.t1;Parent=MS.gene92732.t1
chr3.1 exon 22648299 22648319 22648299 ID=MS.gene92732.t1.exon4;Parent=MS.gene92732.t1
chr3.1 CDS 22648299 22648319 22648299 ID=cds.MS.gene92732.t1;Parent=MS.gene92732.t1
chr3.1 exon 22648421 22648628 22648421 ID=MS.gene92732.t1.exon5;Parent=MS.gene92732.t1
chr3.1 CDS 22648421 22648628 22648421 ID=cds.MS.gene92732.t1;Parent=MS.gene92732.t1
chr3.1 exon 22649148 22649229 22649148 ID=MS.gene92732.t1.exon6;Parent=MS.gene92732.t1
chr3.1 CDS 22649148 22649229 22649148 ID=cds.MS.gene92732.t1;Parent=MS.gene92732.t1
chr3.1 exon 22649366 22649474 22649366 ID=MS.gene92732.t1.exon7;Parent=MS.gene92732.t1
chr3.1 CDS 22649366 22649474 22649366 ID=cds.MS.gene92732.t1;Parent=MS.gene92732.t1
chr3.1 exon 22650133 22650249 22650133 ID=MS.gene92732.t1.exon8;Parent=MS.gene92732.t1
chr3.1 CDS 22650133 22650249 22650133 ID=cds.MS.gene92732.t1;Parent=MS.gene92732.t1
chr3.1 exon 22650757 22650978 22650757 ID=MS.gene92732.t1.exon9;Parent=MS.gene92732.t1
chr3.1 CDS 22650757 22650978 22650757 ID=cds.MS.gene92732.t1;Parent=MS.gene92732.t1
Gene Sequence

>MS.gene92732

ATGAGAAAGATGTATTCACAAAGCATAATTCTTTCACTTTTCACCATTTTAGCCTCATTTGGTTTGTGTTTTGGCTCTTACTTAGAAGAAAGGCATTATTTAACAAATCATCAACCTTACAATGAGAGGTTGGTGAAGCCAATACATGAACAATTTAGTTTCATGGCAAGGGCTCATCATCCATCTATCGCGCCTTCGCCGCAATCTCAAAACACGGTTAACGTTGACGACTATGGAGCCAAATCTAATGATGGACAAGTTGATAATGAGGTAATTTAGCGAAAACAATGTGTGGTATATTTTTACTTAAGTTGTATTTGAATCTCACGTTGTCATGATTCATGAGTTATGCAATGCTTATATGTGTTTTTGTCTCATCTTACAAGTCCGTTTTGTAGAGTGACATTCAAATTCATTTAAAATATTTATGTGATCAAGGTTTAACTGCCTTGTTCCGATCACTAATCACATTATGATTGGTCCGATTGTAAAATCGTGTATTTGTTGGTCCGATTGTAAAATTGTGTATTTGATATTTGTTTCCATTTAAATGGTGTTCTCAAATTTCTCATTTTTGCACTTTAGGCATTTGAAATGTCATGGAATGAGGCATGTTCTAAAGGGAAGGTTCTTGTGGTACCTAAACATAGTGTCTATCATCTAAAGCCTATAACATTTTCAGGGCCATGCCAACCCAATACTGCATTAAAGGTAAATTAAAATGATTTATGGTTATAACCCTCAATGTCCACTTAAATATATAAAACTCATTGTTATAACGTTTTTGTGTTTAATTACTGTTTCATTATGTTAGATCTATGGAACCATCAAAGCATGGCCTAATATTTCAGCATATGGAGCAGATAGAAAGCTTTGGATCAAGTTTGAGAATGTCACAGATCTCATAGTTGATGGTGGTGGTACCATTAATGGAAATGGAAAAATATGGTGGGAGAATTCTTGCAAAGTGAATGAAAGCCTTGTATGATATTAACTCAAATTCCTTTTAATTCATTCATTTAATCCATGCATTGATTTTGAATTTGTTAAATTAAGGAAAAATATATTTTGTCATTTTTTGTTTCTTGTTTACTTTTTAGTATTAACTAAAAATCGTATGCTATTATACACTTTAATTTTTTCCTTTTCAAAAATTTATTTTGTTTATACAAACATAAAGAAAATAACTTTTTTGCCAAGTAAAGAAAATAACTAATTACTCACTTTTCCTCAATATTTTTATAATTAGGCTCGCCTTTTAATTTGTAAATAAATTTTTTTTACAAATAAAGAAAATAACTTACAAAGAAACATAAAGAATTGTTTTTAAGAAATTTTAATAACCATTTATTATTAGTTTATTTGCAATTAGTGATTTGAATTTTATGGAATCATTATATAGACTTTTTTTCCTTATCATTTTAATTTGATTCAAATTTTAAATACTGACCATAATTTCTTTACTCTCCTTTTATTTCACAGCCATGCAAGGGGGCACCAACAGTAAGTTAAATTTTCATTTTTGTGAACTTTATTACATGCTTTTCTGAAATACTCATCTTTATTCAATTTAATTTTTCATGGAAAATTTGTTGCATATATAGGCTGTGACTTTCGATGAATGCAATAATTTGAAAGTGGATAAGATAAGATTCAGAAATGCACAACAAATGCATATAAGGATTGAAGGATGCAACAATGTTTGGGCATCAAATCTAATAGTCACAGCACCAGGACACAGTCCCAACACTGATGGAATTCATATTACCCATTCAGAGAATGTTTTCATAACCAACAGCACCATTGGGACAGGTAAAAAGATATATAAATGAAAAAAAATGTCACATTATAATATCATTTTTCATAATATATGTGTTTTCATATTATAATATCATTTTTTTTAAATCATAACTAATTATATGATGAAAAATTATTAGACGTTATAGTAGAGTAATTTTGCATTGTTTGTGCATAATAATTAAGTAAATCAAAGATTAGATTATGCACAATTTATTTATTTTTTTAAAGAATTATGCACAATTTCTAAACAAATTATTCAAATGTATAATTTTTCTTAAAAAATATGTAGCGTTTGTATTTTCTTTAAATGACACACATATGTATGTATGTATGTATGTATGTATGTATGTACTCTAATCATTAAAAATGAATTATTATTTTTATTTTTATAGAAACTAACTTTAAGACAAGAAGTCATTTTAGGAAGTAATAAACAAAACATCTATTATAACTTTATAACCCAATAAATAATAATAAATAGTTACTTGAATTTTTCAATTTTCTAATTTATTCCTCACTATGTCTGTTAAGGTGATGATTGTATTTCAATTGTAAGTGGGTCCAAAAATGTTCGAGCAACAGATATTACTTGTGGACCAGGACATGGAATCAGGTTCATGACTCTCTTAGTTGAAGTTTTTTTTTTCTCTCGTTGAATTTTAAATTGATTAGTTAAAAAATTTGATATGGTGATTATTATTTTTAATTGATTGGTTAAAAAATTTGATGTGGTAATTATTGTTTTCTAGCATTGGAAGCTTAGGAGGAGGTAACACAGAAGCTGAAGTGTCTAATGTGGAAGTGAACAGAGCCACACTAATAGGAACCACTAATGGAGTCAGAATAAAGACTTGGCAGGTAAATTTATGGCTATTTATTAAATAAATTAAGGCTCATTTATAAATTATAAAGTAAAAAGAGTGGAATTAAAGCTACCCACTTAATTTAATTTTTTATTTTACCAAATCATCTCAAGGACTTCAAGTAAATATGGTTTATTTTATAATTTTGGTTAAACTTCATGTTAATTTAGGACCAAATTAGGTGCATTAGCACTATTATATTGGGAAGTTGACCAATGTTACATGGACTCATAATGGATTTTTTTTATAATGGTTGATTTTCATTTCTAACTAAACATAAAGTTTGACAAGCAAAACTTTAACTAACCAAGTTTGGCAAGTTTACAAAGTCTACCAGTTTCTAACCTTATTACTTCAAACATGTCAATAACATTTTATATTGTGTTGTTCAACTTTCTTTAGTCCTTCTTCTTAACTAATTTGAAGCAACAAAGAGTTTTTTTTCATTTTTTTTTTATAATTTTAGATGTCCATATACTTGATGAACATTAACTTTGACTAGACTATAAGAATGTATTTAAAAAAATTGATAAAAATTTATTCATTGTTATATTAGTAGTGTAGAGCTTAACTTGTTAGCTTTACTATTGATTTTGAAAGATAAACGTTTTTGGTCTAATGTCTTATTTTTCATACTATATATCTAAATGCAGGGAGGTTCTGGCTATGCAAGAAACATCAAATTTATGAACATAGTCATGCGAAATGTGACTAATCCCATAATCATAACTCAAAAATATTGTGACCAAAAAAAGAAATGTCAAGAGCAGGTAATTGTTTTTAAATGTCTTAACTACTTTTATTTTTGATATTATTTGAAGAAGAAAAAAATAAAATTAACGAACAAAATCAGAGGAAACAACCTAAACTTGAGTTTTAGGTCTAAAAACAAATTATCAAAAATATGTATAGAGCAACACATGATGTGGGGTTTCAGAGCAACACAAGATGTGGGGGTATAAAGAGCATTTATCTATAAAAAAAATTCTTTTTCATTTTACAATATGTTTTCACCAAGCCCATGTTTTTATTCATTTTAATACACCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCGCCTTTTTTTATTTGTTTAGTTTCATGGTTCAAAGTTCAAACTACAATTTATGCTTTTATAAAATTTGGTTGGGTTTAGTCCACTCTTTTTATCTCTTTAAATATTTGTTACTAATTTAATTTTTTTTTAAATGTAGTTATAATACTGTTTAAAATTCGTTACTAATATAATCAAAATCATCGTCAAATTGCAGAATTCAGCTGTGGAATTGAGCAATGTGATGTACCAAAACATAAAAGGAACAAGTGCTTCAGAAGTTGCAATCAAACTTGAATGTAGCAAAGCTGTCCCATGCAAAGGAGTTCACTTGCAAGATGTGAAATTAACAGCAGAAGGCAATGATAACACCACTGCCAAATGTGACAATGTTAATTATTCAAATAGTGGAATGTTCTTTCCTAAGTGTTACCCATGA
Protein sequence

>MS.gene92732.t1

MRKMYSQSIILSLFTILASFGLCFGSYLEERHYLTNHQPYNERLVKPIHEQFSFMARAHHPSIAPSPQSQNTVNVDDYGAKSNDGQVDNEAFEMSWNEACSKGKVLVVPKHSVYHLKPITFSGPCQPNTALKIYGTIKAWPNISAYGADRKLWIKFENVTDLIVDGGGTINGNGKIWWENSCKVNESLPCKGAPTAVTFDECNNLKVDKIRFRNAQQMHIRIEGCNNVWASNLIVTAPGHSPNTDGIHITHSENVFITNSTIGTGDDCISIVSGSKNVRATDITCGPGHGISIGSLGGGNTEAEVSNVEVNRATLIGTTNGVRIKTWQGGSGYARNIKFMNIVMRNVTNPIIITQKYCDQKKKCQEQNSAVELSNVMYQNIKGTSASEVAIKLECSKAVPCKGVHLQDVKLTAEGNDNTTAKCDNVNYSNSGMFFPKCYP