AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040945

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040945.t1 MTR_1g052315 93.987 449 16 1 11 448 1 449 0.0 861
MS.gene040945.t1 MTR_7g091850 65.772 447 133 9 1 430 1 444 0.0 545
MS.gene040945.t1 MTR_7g091840 58.869 389 133 7 1 373 1 378 8.31e-152 436
MS.gene040945.t1 MTR_2g060350 51.253 439 193 7 7 429 8 441 1.35e-147 428
MS.gene040945.t1 MTR_3g030540 49.772 438 197 4 7 430 8 436 6.09e-135 395
MS.gene040945.t1 MTR_2g103410 49.046 367 174 3 74 427 59 425 1.83e-119 356
MS.gene040945.t1 MTR_8g065030 44.094 381 196 4 39 407 35 410 4.17e-109 330
MS.gene040945.t1 MTR_6g005630 45.773 343 167 7 73 403 44 379 3.49e-96 296
MS.gene040945.t1 MTR_1g086390 42.614 352 177 7 74 402 81 430 4.97e-89 279
MS.gene040945.t1 MTR_4g094715 40.722 388 206 8 69 434 60 445 7.52e-88 275
MS.gene040945.t1 MTR_2g435640 40.000 380 207 7 65 427 44 419 2.10e-87 273
MS.gene040945.t1 MTR_2g103650 40.870 345 186 5 73 400 27 370 3.51e-86 269
MS.gene040945.t1 MTR_7g113910 40.872 367 152 5 50 414 31 334 4.98e-86 268
MS.gene040945.t1 MTR_4g083660 42.667 375 197 8 67 428 2 371 1.28e-84 264
MS.gene040945.t1 MTR_7g110050 41.143 350 184 6 74 402 67 415 5.47e-84 265
MS.gene040945.t1 MTR_4g084050 39.295 369 190 7 74 418 23 381 9.47e-84 263
MS.gene040945.t1 MTR_5g033680 38.743 382 213 7 65 427 50 429 3.94e-83 263
MS.gene040945.t1 MTR_2g049400 40.464 388 203 9 57 428 13 388 1.08e-82 260
MS.gene040945.t1 MTR_6g005630 42.857 343 154 9 73 403 44 356 7.47e-82 258
MS.gene040945.t1 MTR_6g028080 39.118 363 195 7 73 417 29 383 2.26e-80 254
MS.gene040945.t1 MTR_5g034090 38.753 369 184 7 74 403 121 486 2.39e-80 258
MS.gene040945.t1 MTR_8g030930 41.192 369 193 7 72 423 25 386 1.13e-79 252
MS.gene040945.t1 MTR_3g438050 42.398 342 183 5 73 402 26 365 1.24e-79 252
MS.gene040945.t1 MTR_8g065010 38.005 371 187 7 73 403 106 473 1.41e-79 256
MS.gene040945.t1 MTR_3g084360 37.433 374 209 6 62 418 12 377 8.00e-79 250
MS.gene040945.t1 MTR_2g103410 48.263 259 121 3 74 319 59 317 1.16e-78 248
MS.gene040945.t1 MTR_3g054320 38.889 360 191 6 74 416 30 377 5.67e-78 248
MS.gene040945.t1 MTR_3g084380 38.727 377 204 6 56 414 3 370 9.06e-77 245
MS.gene040945.t1 MTR_4g120320 38.133 375 207 10 72 427 50 418 2.20e-76 244
MS.gene040945.t1 MTR_5g043350 37.467 379 213 6 56 417 11 382 2.90e-76 243
MS.gene040945.t1 MTR_1g012390 38.108 370 208 7 73 427 27 390 5.06e-76 243
MS.gene040945.t1 MTR_8g009810 41.192 369 199 7 72 427 33 396 5.16e-76 243
MS.gene040945.t1 MTR_2g032710 40.782 358 186 9 67 402 61 414 5.91e-75 242
MS.gene040945.t1 MTR_0157s0060 39.722 360 180 5 78 416 2 345 1.04e-74 238
MS.gene040945.t1 MTR_4g034020 39.722 360 180 5 78 416 2 345 1.04e-74 238
MS.gene040945.t1 MTR_1g088160 34.853 373 219 8 74 427 35 402 1.13e-73 237
MS.gene040945.t1 MTR_8g010070 36.815 383 210 10 57 425 18 382 3.78e-69 225
MS.gene040945.t1 MTR_8g010040 37.127 369 204 8 73 428 31 384 5.77e-69 224
MS.gene040945.t1 MTR_8g010080 37.571 354 197 6 74 416 31 371 1.08e-68 223
MS.gene040945.t1 MTR_2g058640 36.170 376 211 9 74 429 25 391 4.64e-67 220
MS.gene040945.t1 MTR_2g058840 34.456 386 224 9 63 429 14 389 1.18e-65 216
MS.gene040945.t1 MTR_2g029170 37.612 335 192 8 106 428 29 358 1.52e-65 214
MS.gene040945.t1 MTR_7g035415 39.792 289 152 5 74 348 40 320 1.58e-65 214
MS.gene040945.t1 MTR_8g008765 37.846 325 177 6 74 386 31 342 2.06e-65 214
MS.gene040945.t1 MTR_8g010090 37.079 356 197 10 74 416 31 372 3.12e-65 214
MS.gene040945.t1 MTR_8g010110 37.921 356 194 10 74 416 31 372 3.98e-65 214
MS.gene040945.t1 MTR_2g058670 34.097 393 218 9 63 429 14 391 4.97e-64 212
MS.gene040945.t1 MTR_1g013740 33.423 371 212 9 73 428 34 384 6.75e-63 208
MS.gene040945.t1 MTR_1g013730 33.962 371 210 9 73 428 26 376 1.39e-61 205
MS.gene040945.t1 MTR_5g097860 34.006 347 206 9 47 378 2 340 2.26e-59 198
MS.gene040945.t1 MTR_8g077320 39.310 290 141 6 74 348 33 302 2.32e-59 198
MS.gene040945.t1 MTR_5g034090 38.246 285 136 5 74 319 121 404 1.23e-58 198
MS.gene040945.t1 MTR_5g063430 37.124 299 164 7 72 355 23 312 2.55e-55 186
MS.gene040945.t1 MTR_8g010050 34.615 338 160 9 74 398 31 320 1.85e-53 183
MS.gene040945.t1 MTR_8g008700 38.057 247 138 3 142 386 32 265 3.10e-49 170
MS.gene040945.t1 MTR_8g031180 39.791 191 110 1 205 390 73 263 2.85e-41 148
MS.gene040945.t1 MTR_2g100040 31.902 326 159 9 90 400 39 316 3.12e-41 150
MS.gene040945.t1 MTR_4g124980 23.821 424 261 14 73 448 73 482 1.84e-23 103
MS.gene040945.t1 MTR_2g042740 23.077 416 265 13 73 443 55 460 7.00e-22 98.2
MS.gene040945.t1 MTR_7g088550 28.077 260 165 8 159 404 163 414 2.84e-21 96.3
MS.gene040945.t1 MTR_7g078680 24.324 407 248 13 75 434 56 449 4.50e-21 95.9
MS.gene040945.t1 MTR_8g028725 24.396 414 243 14 73 434 54 449 2.50e-20 93.6
MS.gene040945.t1 MTR_3g096330 28.696 230 138 5 159 372 189 408 4.45e-20 93.6
MS.gene040945.t1 MTR_8g098840 24.259 371 232 10 75 404 45 407 1.20e-19 91.7
MS.gene040945.t1 MTR_4g120730 23.544 395 237 13 72 417 38 416 2.72e-19 90.5
MS.gene040945.t1 MTR_1g100050 24.091 440 260 16 56 434 18 444 6.38e-19 89.4
MS.gene040945.t1 MTR_1g100040 25.430 291 193 9 159 434 169 450 2.12e-18 87.8
MS.gene040945.t1 MTR_5g090160 22.481 387 249 10 68 411 36 414 2.70e-18 87.4
MS.gene040945.t1 MTR_1g100060 24.585 301 203 9 159 444 206 497 2.94e-18 87.4
MS.gene040945.t1 MTR_2g435340 22.464 414 267 13 56 428 23 423 3.93e-18 86.7
MS.gene040945.t1 MTR_3g449590 23.000 400 251 12 73 427 46 433 3.95e-18 86.7
MS.gene040945.t1 MTR_1g099850 23.636 440 262 14 56 434 23 449 1.02e-17 85.5
MS.gene040945.t1 MTR_2g435340 22.222 333 213 8 133 428 35 358 2.08e-17 84.0
MS.gene040945.t1 MTR_7g110710 28.179 291 182 11 159 434 156 434 3.44e-16 80.9
MS.gene040945.t1 MTR_7g110710 28.179 291 182 11 159 434 156 434 3.54e-16 80.9
MS.gene040945.t1 MTR_1g086030 28.626 262 151 7 159 391 91 345 1.47e-15 78.6
MS.gene040945.t1 MTR_1g086030 28.626 262 151 7 159 391 195 449 1.78e-15 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040945.t1 AT3G57510 53.288 441 174 11 5 429 6 430 1.83e-151 437
MS.gene040945.t1 AT3G07970 55.844 385 154 5 59 429 56 438 1.70e-149 432
MS.gene040945.t1 AT2G41850 56.533 398 151 8 47 430 42 431 2.52e-144 419
MS.gene040945.t1 AT1G80170 47.340 376 184 4 66 427 45 420 8.68e-118 352
MS.gene040945.t1 AT1G70500 48.098 368 178 4 75 430 68 434 2.27e-117 352
MS.gene040945.t1 AT1G23460 44.648 383 198 5 75 445 44 424 1.08e-108 328
MS.gene040945.t1 AT1G23460 44.648 383 198 5 75 445 68 448 1.62e-108 328
MS.gene040945.t1 AT1G56710 43.536 379 188 8 73 427 47 423 4.98e-94 291
MS.gene040945.t1 AT5G14650 44.669 347 175 7 73 407 50 391 6.29e-94 290
MS.gene040945.t1 AT2G43890 40.104 384 214 8 56 428 11 389 6.47e-90 278
MS.gene040945.t1 AT2G43880 40.476 378 199 8 67 428 24 391 1.37e-89 278
MS.gene040945.t1 AT1G02460 42.541 362 179 9 74 409 89 447 2.22e-88 278
MS.gene040945.t1 AT3G15720 39.782 367 195 5 69 418 19 376 9.40e-86 270
MS.gene040945.t1 AT3G15720 39.782 367 195 5 69 418 18 375 1.05e-85 270
MS.gene040945.t1 AT4G01890 40.730 356 183 9 73 402 64 417 2.92e-85 269
MS.gene040945.t1 AT2G43860 41.823 373 196 10 57 416 19 383 9.03e-85 266
MS.gene040945.t1 AT3G26610 42.450 351 183 7 73 407 66 413 2.78e-84 266
MS.gene040945.t1 AT4G35670 40.166 361 193 7 72 417 22 374 9.81e-84 263
MS.gene040945.t1 AT4G18180 38.265 392 209 9 69 430 34 422 5.75e-83 261
MS.gene040945.t1 AT1G48100 39.607 356 192 7 73 407 79 432 6.66e-83 263
MS.gene040945.t1 AT1G10640 41.351 370 177 8 72 403 117 484 7.44e-83 265
MS.gene040945.t1 AT1G43080 40.053 377 201 9 72 428 29 400 1.55e-82 260
MS.gene040945.t1 AT3G15720 39.237 367 194 6 69 418 18 372 1.67e-82 261
MS.gene040945.t1 AT1G60590 39.084 371 183 7 74 403 123 491 6.60e-82 263
MS.gene040945.t1 AT1G43090 40.591 372 196 9 72 423 29 395 7.68e-82 259
MS.gene040945.t1 AT2G15460 39.523 377 203 9 72 428 29 400 1.14e-81 258
MS.gene040945.t1 AT1G05660 39.305 374 212 7 65 427 19 388 3.10e-81 256
MS.gene040945.t1 AT5G44840 36.364 363 205 5 72 417 22 375 1.06e-80 255
MS.gene040945.t1 AT1G05650 39.037 374 213 7 65 427 19 388 1.52e-80 254
MS.gene040945.t1 AT2G43870 40.160 376 206 10 67 429 14 383 1.63e-80 254
MS.gene040945.t1 AT5G17200 39.241 395 192 8 58 417 26 407 1.79e-80 255
MS.gene040945.t1 AT1G43100 40.323 372 197 9 72 423 29 395 2.08e-80 256
MS.gene040945.t1 AT1G80170 46.816 267 129 3 66 319 45 311 2.17e-80 252
MS.gene040945.t1 AT2G40310 40.053 377 201 10 72 428 29 400 6.96e-80 253
MS.gene040945.t1 AT2G33160 40.897 379 200 9 68 427 26 399 7.47e-80 260
MS.gene040945.t1 AT2G15450 39.096 376 204 9 72 427 29 399 8.90e-80 253
MS.gene040945.t1 AT3G59850 42.151 344 182 8 72 402 21 360 1.77e-79 251
MS.gene040945.t1 AT2G15470 38.992 377 205 9 72 428 29 400 2.36e-79 252
MS.gene040945.t1 AT3G59850 42.151 344 182 8 72 402 65 404 3.35e-79 252
MS.gene040945.t1 AT5G27530 38.122 362 193 5 72 418 51 396 5.69e-79 253
MS.gene040945.t1 AT1G78400 39.946 373 201 10 72 427 33 399 1.49e-78 249
MS.gene040945.t1 AT4G13760 38.992 377 205 9 72 428 29 400 1.66e-78 249
MS.gene040945.t1 AT1G02790 37.401 377 209 9 73 429 51 420 3.97e-78 249
MS.gene040945.t1 AT1G65570 39.024 369 206 10 73 427 30 393 1.42e-77 247
MS.gene040945.t1 AT2G26620 39.200 375 205 9 72 428 29 398 1.67e-76 244
MS.gene040945.t1 AT1G17150 37.750 400 227 10 47 429 6 400 6.93e-76 243
MS.gene040945.t1 AT2G43880 41.234 308 156 7 67 358 24 322 8.45e-75 238
MS.gene040945.t1 AT3G07820 38.310 355 203 8 87 428 33 384 1.21e-73 236
MS.gene040945.t1 AT3G15720 39.185 319 170 4 115 418 3 312 2.54e-72 233
MS.gene040945.t1 AT3G07840 36.785 367 216 9 75 428 22 385 5.07e-71 230
MS.gene040945.t1 AT1G80140 38.348 339 185 6 105 427 2 332 1.05e-70 227
MS.gene040945.t1 AT3G07830 36.944 360 206 10 87 430 34 388 1.24e-69 226
MS.gene040945.t1 AT3G14040 37.772 368 213 8 73 427 70 434 2.82e-69 227
MS.gene040945.t1 AT5G48140 36.415 357 206 9 87 428 34 384 4.24e-68 222
MS.gene040945.t1 AT4G32380 35.843 332 189 6 88 402 41 365 1.54e-67 223
MS.gene040945.t1 AT3G07850 36.554 383 225 9 58 427 56 433 1.62e-67 222
MS.gene040945.t1 AT4G35670 41.241 274 153 2 144 417 2 267 7.47e-67 216
MS.gene040945.t1 AT5G14650 43.243 259 132 5 73 319 50 305 7.08e-66 214
MS.gene040945.t1 AT5G44830 35.241 332 183 4 101 417 2 316 3.08e-65 213
MS.gene040945.t1 AT5G39910 36.667 300 153 6 74 356 36 315 1.46e-57 194
MS.gene040945.t1 AT4G32375 35.374 294 180 4 144 434 13 299 9.06e-57 193
MS.gene040945.t1 AT4G32370 33.819 343 194 9 44 364 7 338 6.10e-53 181
MS.gene040945.t1 AT4G32380 35.336 283 159 7 88 355 41 314 4.18e-51 178
MS.gene040945.t1 AT3G42950 24.205 409 259 12 73 438 65 465 7.84e-24 104
MS.gene040945.t1 AT1G19170 22.196 419 266 12 73 443 86 492 8.26e-22 98.2
MS.gene040945.t1 AT3G62110 28.763 299 186 10 159 439 156 445 2.31e-21 96.7
MS.gene040945.t1 AT3G62110 28.763 299 186 10 159 439 156 445 2.31e-21 96.7
MS.gene040945.t1 AT4G23820 24.935 385 211 13 74 403 41 402 1.03e-19 91.7
MS.gene040945.t1 AT4G33440 26.316 285 181 8 159 427 185 456 4.90e-19 89.7
MS.gene040945.t1 AT5G41870 24.548 387 233 10 45 382 11 387 6.23e-18 86.3
MS.gene040945.t1 AT5G49215 24.543 383 229 11 68 405 40 407 1.13e-17 85.5
MS.gene040945.t1 AT5G49215 24.543 383 229 11 68 405 38 405 1.25e-17 85.1
MS.gene040945.t1 AT3G48950 24.510 408 245 17 76 434 47 440 5.28e-17 83.6
MS.gene040945.t1 AT3G61490 26.255 259 170 5 159 404 173 423 6.30e-17 83.2
MS.gene040945.t1 AT3G61490 26.255 259 170 5 159 404 158 408 7.05e-17 83.2
MS.gene040945.t1 AT3G61490 26.255 259 170 5 159 404 158 408 7.05e-17 83.2
MS.gene040945.t1 AT3G61490 26.255 259 170 5 159 404 158 408 7.05e-17 83.2
MS.gene040945.t1 AT4G23500 24.318 403 253 16 75 434 69 462 9.15e-17 82.8
MS.gene040945.t1 AT3G61490 26.054 261 172 5 159 406 271 523 1.03e-16 83.2
MS.gene040945.t1 AT2G23900 23.810 378 228 12 76 406 58 422 2.05e-16 81.6
MS.gene040945.t1 AT3G06770 22.368 380 235 12 66 400 38 402 3.33e-15 77.8
MS.gene040945.t1 AT3G06770 22.368 380 235 12 66 400 39 403 3.59e-15 77.8
MS.gene040945.t1 AT3G06770 23.077 312 186 9 131 400 16 315 4.35e-13 70.9
MS.gene040945.t1 AT3G06770 22.772 303 181 8 139 400 43 333 4.83e-13 70.9
MS.gene040945.t1 AT3G06770 22.772 303 181 8 139 400 43 333 4.83e-13 70.9

Find 0 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAATGTCAATTATATTA+TGG - 6949:203498-203517 MS.gene040945:intron 10.0%
!!! ACTTATTAATTTGATATTTA+TGG + 6949:202459-202478 None:intergenic 10.0%
!! ATATATATATATATGAATGC+AGG - 6949:204428-204447 MS.gene040945:intron 15.0%
!! ATATATATTATCATGTGTAT+TGG + 6949:204346-204365 None:intergenic 15.0%
!! GATAATAAAAATAATTCTAG+CGG - 6949:202675-202694 MS.gene040945:CDS 15.0%
!! TAAATTTCAGAATATTCAAA+TGG - 6949:204476-204495 MS.gene040945:intron 15.0%
!! TAAGATGAAGATATTATTAA+AGG + 6949:204073-204092 None:intergenic 15.0%
!! TAAGATTTATGTTAAGTAAA+TGG + 6949:203188-203207 None:intergenic 15.0%
!! TATATATATATATGAATGCA+GGG - 6949:204429-204448 MS.gene040945:intron 15.0%
!! TATATATTATCATGTGTATT+GGG + 6949:204345-204364 None:intergenic 15.0%
!!! ATTTAAATTTTTCTAAGAAG+TGG + 6949:203780-203799 None:intergenic 15.0%
!!! TATTTATTCTTTTGCTAATA+TGG - 6949:202733-202752 MS.gene040945:CDS 15.0%
!!! TATTTTAATTTTACTCTTTC+AGG - 6949:202826-202845 MS.gene040945:intron 15.0%
!! AAAAAAAAAAATTACACCGA+TGG - 6949:203468-203487 MS.gene040945:intron 20.0%
!! AAAAACAACTTGTAAGAAAA+TGG + 6949:202372-202391 None:intergenic 20.0%
!! AATGTTAGAGATGTTAAAAT+TGG - 6949:202614-202633 MS.gene040945:intron 20.0%
!! ACTTATTACATTTCTACAAA+AGG + 6949:202431-202450 None:intergenic 20.0%
!! CAAAATAAATCATGATCATA+AGG + 6949:201989-202008 None:intergenic 20.0%
!! GATTGTATATCAATTGTAAA+TGG - 6949:203975-203994 MS.gene040945:CDS 20.0%
!! TTTAAATATGTTTGTTTGCA+GGG - 6949:203949-203968 MS.gene040945:intron 20.0%
!!! AAAATCTTAATACCTGTTTT+TGG + 6949:204560-204579 None:intergenic 20.0%
!!! AAATTATCTAGAACTACTAA+TGG - 6949:204214-204233 MS.gene040945:intron 20.0%
!!! ATTTTGAACTACTTCAATTT+AGG - 6949:204279-204298 MS.gene040945:intron 20.0%
!!! GTTAGTGTTGATATAAAATT+TGG - 6949:204641-204660 MS.gene040945:intron 20.0%
!!! GTTGTTTTTATAAGCTATTA+TGG - 6949:202383-202402 MS.gene040945:CDS 20.0%
!!! TAGTTCTGATCTATTATTAT+GGG + 6949:204516-204535 None:intergenic 20.0%
!!! TATAGTTTTACTTTGAACTT+CGG + 6949:203407-203426 None:intergenic 20.0%
!!! TTTTACAGATACATCTAAAA+GGG + 6949:203451-203470 None:intergenic 20.0%
!!! TTTTTACAGATACATCTAAA+AGG + 6949:203452-203471 None:intergenic 20.0%
! AAGTGTACAAGAAAAAAATG+AGG + 6949:204305-204324 None:intergenic 25.0%
! AATATTTCCATTTCCATCAA+TGG + 6949:203089-203108 None:intergenic 25.0%
! AATGTGAAATTGTCATACAA+AGG - 6949:204861-204880 MS.gene040945:CDS 25.0%
! AATTCGCCTTATATAAATGA+TGG - 6949:202062-202081 MS.gene040945:CDS 25.0%
! AGGATTTGACTGTAAAAAAT+GGG - 6949:203571-203590 MS.gene040945:intron 25.0%
! AGTTATATTATACATACCGT+AGG + 6949:203272-203291 None:intergenic 25.0%
! CAAATCTCAAACTCTATTAT+AGG - 6949:203714-203733 MS.gene040945:intron 25.0%
! GTTATATTATACATACCGTA+GGG + 6949:203271-203290 None:intergenic 25.0%
! GTTTAAATATGTTTGTTTGC+AGG - 6949:203948-203967 MS.gene040945:intron 25.0%
! TATTTCGACAAACTTGAATA+AGG - 6949:202248-202267 MS.gene040945:intron 25.0%
! TTAAATATGTTTGTTTGCAG+GGG - 6949:203950-203969 MS.gene040945:intron 25.0%
! TTAATTATTACCTGATACCA+TGG + 6949:204043-204062 None:intergenic 25.0%
! TTATATTATACATACCGTAG+GGG + 6949:203270-203289 None:intergenic 25.0%
! TTGATGGAAATGGAAATATT+TGG - 6949:203089-203108 MS.gene040945:intron 25.0%
! TTTATGTATCAAGTGAGTTA+AGG + 6949:203360-203379 None:intergenic 25.0%
!! ACATTAATATTTTGCACCAT+CGG + 6949:203487-203506 None:intergenic 25.0%
!! AGTTCTGATCTATTATTATG+GGG + 6949:204515-204534 None:intergenic 25.0%
!! ATATTATGGTTTGACTTTGT+AGG - 6949:203512-203531 MS.gene040945:intron 25.0%
!! CTATAATAGAGTTTGAGATT+TGG + 6949:203716-203735 None:intergenic 25.0%
!! GTATAACATTAGAACTTGTT+TGG + 6949:202486-202505 None:intergenic 25.0%
!! TTATAGTACTAATTTGCAAG+AGG - 6949:202016-202035 MS.gene040945:CDS 25.0%
!!! GTAGTTCTGATCTATTATTA+TGG + 6949:204517-204536 None:intergenic 25.0%
!!! TTAAAGGTTTTAATCGATGA+AGG + 6949:202164-202183 None:intergenic 25.0%
AAACTTGAATAAGGTCGATT+CGG - 6949:202257-202276 MS.gene040945:intron 30.0%
ATATATATATGAATGCAGGG+TGG - 6949:204432-204451 MS.gene040945:intron 30.0%
ATGGAAATGGAAATATTTGG+TGG - 6949:203092-203111 MS.gene040945:intron 30.0%
ATGGAGTAAGAATTAAGACA+TGG - 6949:204233-204252 MS.gene040945:intron 30.0%
CAACACTAACAACAATTACA+TGG + 6949:204631-204650 None:intergenic 30.0%
GAGGATTTGACTGTAAAAAA+TGG - 6949:203570-203589 MS.gene040945:intron 30.0%
GATAATTCATTCTTCAGCAT+TGG - 6949:204133-204152 MS.gene040945:intron 30.0%
GTGTTGTACCAAAACATAAA+AGG - 6949:204714-204733 MS.gene040945:CDS 30.0%
GTTCAGAAACTATCTGTTAA+AGG - 6949:203055-203074 MS.gene040945:intron 30.0%
GTTCCACCATCATTTATATA+AGG + 6949:202071-202090 None:intergenic 30.0%
TAAGGAATGAGAGATATCTT+TGG + 6949:201971-201990 None:intergenic 30.0%
TATATATATGAATGCAGGGT+GGG - 6949:204433-204452 MS.gene040945:intron 30.0%
TATTCCTGAAACAAATTCCT+TGG + 6949:204179-204198 None:intergenic 30.0%
TCAAACTCTATTATAGGAAC+TGG - 6949:203720-203739 MS.gene040945:intron 30.0%
TCCATACTCATCAACATTAA+AGG + 6949:202180-202199 None:intergenic 30.0%
TCTCAACAATTGAACTAAGT+GGG + 6949:202043-202062 None:intergenic 30.0%
TTCTCAACAATTGAACTAAG+TGG + 6949:202044-202063 None:intergenic 30.0%
TTTGTAATTGCAGAAATCTG+CGG - 6949:204677-204696 MS.gene040945:intron 30.0%
! ACCTTTAATGTTGATGAGTA+TGG - 6949:202176-202195 MS.gene040945:CDS 30.0%
! AGATAATTTAGCTCCATTCA+CGG + 6949:204203-204222 None:intergenic 30.0%
! CACTTGTTCCTTTTATGTTT+TGG + 6949:204725-204744 None:intergenic 30.0%
!! ATGATACTCTTTGATTTGCA+AGG + 6949:202950-202969 None:intergenic 30.0%
!! TGATACTCTTTGATTTGCAA+GGG + 6949:202949-202968 None:intergenic 30.0%
AAACTATCTGTTAAAGGTGG+TGG - 6949:203061-203080 MS.gene040945:intron 35.0%
ACATGAATTCCATCAGTGTT+TGG + 6949:203675-203694 None:intergenic 35.0%
AGTAAGAATTAAGACATGGC+AGG - 6949:204237-204256 MS.gene040945:intron 35.0%
AGTATCATAGTTCAGATCTC+TGG - 6949:202962-202981 MS.gene040945:intron 35.0%
ATAGAGGAAATGCATGAACA+TGG - 6949:204909-204928 MS.gene040945:CDS 35.0%
ATCAAACATAAGCCAATGTG+TGG + 6949:203032-203051 None:intergenic 35.0%
CAAGTAGCATGTTCTTCTAA+GGG - 6949:202866-202885 MS.gene040945:intron 35.0%
CAGAAACTATCTGTTAAAGG+TGG - 6949:203058-203077 MS.gene040945:intron 35.0%
GAATGAGAGATATCTTTGGA+GGG + 6949:201967-201986 None:intergenic 35.0%
TCAAACATAAGCCAATGTGT+GGG + 6949:203031-203050 None:intergenic 35.0%
TCGCCTTATATAAATGATGG+TGG - 6949:202065-202084 MS.gene040945:CDS 35.0%
TTCTGCCAATGTTAGAGTTT+CGG - 6949:203620-203639 MS.gene040945:intron 35.0%
TTGAGCTTAAAGAGCAAGTT+GGG - 6949:202128-202147 MS.gene040945:CDS 35.0%
TTTCCTCTATGTAATTGCAG+CGG + 6949:204899-204918 None:intergenic 35.0%
TTTGAGCTTAAAGAGCAAGT+TGG - 6949:202127-202146 MS.gene040945:CDS 35.0%
TTTGTACAAGTGCAACAACT+TGG - 6949:203542-203561 MS.gene040945:intron 35.0%
! CTCTAACATTGGCAGAATTT+TGG + 6949:203617-203636 None:intergenic 35.0%
!! AAATGATGGTGGAACATTCA+AGG - 6949:202076-202095 MS.gene040945:CDS 35.0%
!! GATTTGGATGTTTTGAGTGT+TGG + 6949:203700-203719 None:intergenic 35.0%
!! GGTCTTGTTTGAAATCAGAT+GGG + 6949:203009-203028 None:intergenic 35.0%
!! GTCTGTAGCTTTAAGATTCT+TGG + 6949:204003-204022 None:intergenic 35.0%
!!! CTTAATACCTGTTTTTGGCA+TGG + 6949:204555-204574 None:intergenic 35.0%
AAAGCTACAGACATAACCTG+CGG - 6949:204011-204030 MS.gene040945:CDS 40.0%
AACATAGGCCTTGAACTTGA+AGG - 6949:204810-204829 MS.gene040945:CDS 40.0%
ACTCTTTCAGGCATTCAAGA+AGG - 6949:202838-202857 MS.gene040945:intron 40.0%
AGAAATCTGCGGTTCAGATA+AGG - 6949:204688-204707 MS.gene040945:intron 40.0%
CAAACATAAGCCAATGTGTG+GGG + 6949:203030-203049 None:intergenic 40.0%
GCAAGTAGCATGTTCTTCTA+AGG - 6949:202865-202884 MS.gene040945:intron 40.0%
GGAATGAGAGATATCTTTGG+AGG + 6949:201968-201987 None:intergenic 40.0%
GGGATACTATTGCAGAACAT+AGG - 6949:204795-204814 MS.gene040945:CDS 40.0%
GTTAAGCCAATCACATTCTC+TGG - 6949:202923-202942 MS.gene040945:CDS 40.0%
GTTTCAGGAATAACCGTGAA+TGG - 6949:204187-204206 MS.gene040945:intron 40.0%
TCTGCCAATGTTAGAGTTTC+GGG - 6949:203621-203640 MS.gene040945:intron 40.0%
TGCAATAGTATCCCTTGACA+TGG + 6949:204789-204808 None:intergenic 40.0%
TGGTAAAACTGATGACACAC+AGG - 6949:202211-202230 MS.gene040945:CDS 40.0%
TTCAGGCATTCAAGAAGGTT+TGG - 6949:202843-202862 MS.gene040945:intron 40.0%
TTCCTCTATGTAATTGCAGC+GGG + 6949:204898-204917 None:intergenic 40.0%
! ATGGGTTATCTGATGCTACA+AGG + 6949:202991-203010 None:intergenic 40.0%
! TCTTCAGCATTGGAAGCTTA+GGG - 6949:204143-204162 MS.gene040945:intron 40.0%
! TTCTAAGGGATCAGTTGTTG+TGG - 6949:202880-202899 MS.gene040945:CDS 40.0%
! TTCTTCAGCATTGGAAGCTT+AGG - 6949:204142-204161 MS.gene040945:intron 40.0%
!! GGGTCTTGTTTGAAATCAGA+TGG + 6949:203010-203029 None:intergenic 40.0%
!!! TTCTTTTTTGCAGCCTTGCA+AGG - 6949:203241-203260 MS.gene040945:CDS 40.0%
ACAGAGTCCATGCCAAAAAC+AGG - 6949:204545-204564 MS.gene040945:intron 45.0%
AGCCAGAACTTTCCATGTCA+AGG - 6949:204774-204793 MS.gene040945:CDS 45.0%
ATAGGCCTTGAACTTGAAGG+TGG - 6949:204813-204832 MS.gene040945:CDS 45.0%
ATGCATGAACATGGTGGCTT+TGG - 6949:204918-204937 MS.gene040945:CDS 45.0%
GAGACCCGAAACTCTAACAT+TGG + 6949:203628-203647 None:intergenic 45.0%
GAGGAAATGCATGAACATGG+TGG - 6949:204912-204931 MS.gene040945:CDS 45.0%
GCCAGAACTTTCCATGTCAA+GGG - 6949:204775-204794 MS.gene040945:CDS 45.0%
GGTGGAACCATTGATGGAAA+TGG - 6949:203079-203098 MS.gene040945:intron 45.0%
TAAGGGATCAGTTGTTGTGG+AGG - 6949:202883-202902 MS.gene040945:CDS 45.0%
TATTACCTGATACCATGGCC+TGG + 6949:204038-204057 None:intergenic 45.0%
TCAAACAAGACCCCACACAT+TGG - 6949:203017-203036 MS.gene040945:intron 45.0%
TCCCTTGACATGGAAAGTTC+TGG + 6949:204779-204798 None:intergenic 45.0%
TCCTCTATGTAATTGCAGCG+GGG + 6949:204897-204916 None:intergenic 45.0%
! CTTCAGCATTGGAAGCTTAG+GGG - 6949:204144-204163 MS.gene040945:intron 45.0%
! GGCTCCAAGGAATTTGTTTC+AGG - 6949:204172-204191 MS.gene040945:intron 45.0%
! GTGCAACAACTTGGTAGTTG+AGG - 6949:203551-203570 MS.gene040945:intron 45.0%
! GTTGATGAGTATGGAGCTCA+AGG - 6949:202185-202204 MS.gene040945:CDS 45.0%
!! AAAGGTGGTGGAACCATTGA+TGG - 6949:203073-203092 MS.gene040945:intron 45.0%
!!! AGATAAATTTAAAATAAAAA+TGG + 6949:202643-202662 None:intergenic 5.0%
!!! GAATAAATAAAATTTTTTTT+TGG + 6949:202722-202741 None:intergenic 5.0%
ATATGAATGCAGGGTGGGTC+AGG - 6949:204438-204457 MS.gene040945:intron 50.0%
ATTGGAAGCTTAGGGGAAGG+GGG - 6949:204151-204170 MS.gene040945:intron 50.0%
CAAGGGCCAGAGAATGTGAT+TGG + 6949:202932-202951 None:intergenic 50.0%
CATTGGAAGCTTAGGGGAAG+GGG - 6949:204150-204169 MS.gene040945:intron 50.0%
CCTCTATGTAATTGCAGCGG+GGG + 6949:204896-204915 None:intergenic 50.0%
GAGGACAGTCCAAACACTGA+TGG - 6949:203663-203682 MS.gene040945:intron 50.0%
GAGTATGGAGCTCAAGGAGA+TGG - 6949:202191-202210 MS.gene040945:CDS 50.0%
GCATTGGAAGCTTAGGGGAA+GGG - 6949:204149-204168 MS.gene040945:intron 50.0%
TCAGTGTTTGGACTGTCCTC+TGG + 6949:203663-203682 None:intergenic 50.0%
TGAACTTGAAGGTGGAGGAG+AGG - 6949:204821-204840 MS.gene040945:CDS 50.0%
! AGCATTGGAAGCTTAGGGGA+AGG - 6949:204148-204167 MS.gene040945:intron 50.0%
! CTCCTCCACCTTCAAGTTCA+AGG + 6949:204821-204840 None:intergenic 50.0%
ACAGACATAACCTGCGGACC+AGG - 6949:204017-204036 MS.gene040945:CDS 55.0%
CCCCCGCTGCAATTACATAG+AGG - 6949:204893-204912 MS.gene040945:CDS 55.0%
GGCCTTGAACTTGAAGGTGG+AGG - 6949:204816-204835 MS.gene040945:CDS 55.0%
TCTCACTGTGACAGCACCAG+AGG - 6949:203644-203663 MS.gene040945:intron 55.0%
TGAAGGTGGAGGAGAGGCTA+AGG - 6949:204827-204846 MS.gene040945:CDS 55.0%
ATAACCTGCGGACCAGGCCA+TGG - 6949:204023-204042 MS.gene040945:CDS 60.0%
ACCGTAGGGGCAGCCTTGCA+AGG + 6949:203257-203276 None:intergenic 65.0%
CTTAGGGGAAGGGGGCTCCA+AGG - 6949:204159-204178 MS.gene040945:intron 65.0%
GATACCATGGCCTGGTCCGC+AGG + 6949:204030-204049 None:intergenic 65.0%
GCCTTGCAAGGCTGCCCCTA+CGG - 6949:203253-203272 MS.gene040945:CDS 65.0%
GCGGACCAGGCCATGGTATC+AGG - 6949:204030-204049 MS.gene040945:CDS 65.0%


Chromosome Type Strat End Strand Name
6949 gene 201960 204962 201960 ID=MS.gene040945
6949 mRNA 201960 204962 201960 ID=MS.gene040945.t1;Parent=MS.gene040945
6949 exon 204690 204962 204690 ID=MS.gene040945.t1.exon1;Parent=MS.gene040945.t1
6949 CDS 204690 204962 204690 ID=cds.MS.gene040945.t1;Parent=MS.gene040945.t1
6949 exon 203960 204074 203960 ID=MS.gene040945.t1.exon2;Parent=MS.gene040945.t1
6949 CDS 203960 204074 203960 ID=cds.MS.gene040945.t1;Parent=MS.gene040945.t1
6949 exon 203778 203926 203778 ID=MS.gene040945.t1.exon3;Parent=MS.gene040945.t1
6949 CDS 203778 203926 203778 ID=cds.MS.gene040945.t1;Parent=MS.gene040945.t1
6949 exon 203648 203668 203648 ID=MS.gene040945.t1.exon4;Parent=MS.gene040945.t1
6949 CDS 203648 203668 203648 ID=cds.MS.gene040945.t1;Parent=MS.gene040945.t1
6949 exon 203181 203388 203181 ID=MS.gene040945.t1.exon5;Parent=MS.gene040945.t1
6949 CDS 203181 203388 203181 ID=cds.MS.gene040945.t1;Parent=MS.gene040945.t1
6949 exon 202871 202952 202871 ID=MS.gene040945.t1.exon6;Parent=MS.gene040945.t1
6949 CDS 202871 202952 202871 ID=cds.MS.gene040945.t1;Parent=MS.gene040945.t1
6949 exon 202664 202772 202664 ID=MS.gene040945.t1.exon7;Parent=MS.gene040945.t1
6949 CDS 202664 202772 202664 ID=cds.MS.gene040945.t1;Parent=MS.gene040945.t1
6949 exon 202356 202472 202356 ID=MS.gene040945.t1.exon8;Parent=MS.gene040945.t1
6949 CDS 202356 202472 202356 ID=cds.MS.gene040945.t1;Parent=MS.gene040945.t1
6949 exon 201960 202232 201960 ID=MS.gene040945.t1.exon9;Parent=MS.gene040945.t1
6949 CDS 201960 202232 201960 ID=cds.MS.gene040945.t1;Parent=MS.gene040945.t1
Gene Sequence

>MS.gene040945

ATGGCCCTCCAAAGATATCTCTCATTCCTTATGATCATGATTTATTTTGTTGCTTGTTATAGTACTAATTTGCAAGAGGACCCACTTAGTTCAATTGTTGAGAATTCGCCTTATATAAATGATGGTGGAACATTCAAGGATTTTCTCATGCAAAGTACAGATCATGTTTTGAGCTTAAAGAGCAAGTTGGGTGACACTTCTCCTTCATCGATTAAAACCTTTAATGTTGATGAGTATGGAGCTCAAGGAGATGGTAAAACTGATGACACACAGGTATATATATATATTTATTTCGACAAACTTGAATAAGGTCGATTCGGATAGAGAAATGAATTTTGTACAAGCATTTTGTGACAACTCTTTATATATAAACTATTTTTATAATTTATTTCGATAAAGTAAAGTGAAACCATTTTCTTACAAGTTGTTTTTATAAGCTATTATGGAGAACTTGTAGAAATCTAAAAACCTTTTGTAGAAATGTAATAAGTTGTTTCCATAAATATCAAATTAATAAGTCAAACCAAACAAGTTCTAATGTTATACTAGTTGAAAATAATTGAATTTTGAATCTTATTTATACTAGTTGAAAATAATTGAATTTTGAAAAATAAAGAAAGAAAAACATGAAATTTGTCTTTAATTCTATCACTAAATGTTAGAGATGTTAAAATTGGAAACCATTTTTATTTTAAATTTATCTCAAATATTCATCGATAATAAAAATAATTCTAGCGGTAGACTTTATTATTATTATTACCAAAAAAAAATTTTATTTATTCTTTTGCTAATATGGTCTATATCAATATCGTGTTTGACAAATTATTTTTTTAAGCTTAATAAATAATTTTAAAAAAAAATTACAATATTTTAATTTTACTCTTTCAGGCATTCAAGAAGGTTTGGCAAGTAGCATGTTCTTCTAAGGGATCAGTTGTTGTGGAGGCTCAAAAGAATTATCTTGTTAAGCCAATCACATTCTCTGGCCCTTGCAAATCAAAGAGTATCATAGTTCAGATCTCTGGAAGCCTTGTAGCATCAGATAACCCATCTGATTTCAAACAAGACCCCACACATTGGCTTATGTTTGATAGTGTTCAGAAACTATCTGTTAAAGGTGGTGGAACCATTGATGGAAATGGAAATATTTGGTGGCAGAACTCATGCAAAACGAACAAAAAACTCGTAAGATATAACAAGACAAATTTGTTATTATAATATATATCCATTTACTTAACATAAATCTTATTCAAGTGCTAATTTTTTTTTTTTTTTATGTTTTTCTTTTTTGCAGCCTTGCAAGGCTGCCCCTACGGTATGTATAATATAACTCTCTCTCTCTCACTAATATATTAACTTTTTAATTATAATAATATCAATTTAATTTGTATCAGTAACCTTAACTCACTTGATACATAAAAAGATTGTATTATATATGCACGTGCCGAAGTTCAAAGTAAAACTATAAATTACTTTAACATATATACTCCCTTTTAGATGTATCTGTAAAAAAAAAAAATTACACCGATGGTGCAAAATATTAATGTCAATTATATTATGGTTTGACTTTGTAGGCGTTAACTTTGTACAAGTGCAACAACTTGGTAGTTGAGGATTTGACTGTAAAAAATGGGCAACAAATTCATGTTCAATTCCAAAATTCTGCCAATGTTAGAGTTTCGGGTCTCACTGTGACAGCACCAGAGGACAGTCCAAACACTGATGGAATTCATGTCACCAACACTCAAAACATCCAAATCTCAAACTCTATTATAGGAACTGGTATTCTCGATTCATTTGATATATCTCATATATTACCACTTCTTAGAAAAATTTAAATTGACAACAAAAAAATTGAGATAAAAAAATAAGAAATTTATCTCTAATTAGTATTAGATACATTTTTTTTTCATCACTATTTTTCTTATCTAAGTCAATTTTTTAAGTAATATATATTTCAATTTATTAAATATCAATTTTAGTTTCAAGTTTAAATATGTTTGTTTGCAGGGGATGATTGTATATCAATTGTAAATGGAACCAAGAATCTTAAAGCTACAGACATAACCTGCGGACCAGGCCATGGTATCAGGTAATAATTAATTAATTACCTTTAATAATATCTTCATCTTAGTAATTAAATATCGTTAAATTAAACTTCACACATGTTAATGATAATTCATTCTTCAGCATTGGAAGCTTAGGGGAAGGGGGCTCCAAGGAATTTGTTTCAGGAATAACCGTGAATGGAGCTAAATTATCTAGAACTACTAATGGAGTAAGAATTAAGACATGGCAGGTAATTAATATTAATTTCAAATTTTGAACTACTTCAATTTAGGCCTCATTTTTTTCTTGTACACTTCAATTTTAGCTTTCTAACCCAATACACATGATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGAATGCAGGGTGGGTCAGGAAGTGCAAGCAACATTAAATTTCAGAATATTCAAATGGACAATGTAACTAACCCCATAATAATAGATCAGAACTACTGTGATCAACAGAGTCCATGCCAAAAACAGGTATTAAGATTTTTGTTTTATTTTGTTTATGAAGTTGATCTATATTAGACATAATTTATAACCATGTAATTGTTGTTAGTGTTGATATAAAATTTGGTTAATTAATTAATTTTGTAATTGCAGAAATCTGCGGTTCAGATAAGGAATGTGTTGTACCAAAACATAAAAGGAACAAGTGCTTCTGATGTAGCTATGCAATTTAATTGTAGCCAGAACTTTCCATGTCAAGGGATACTATTGCAGAACATAGGCCTTGAACTTGAAGGTGGAGGAGAGGCTAAGGCTTCATGCAACAATGTGAAATTGTCATACAAAGGAAATGTTAGCCCCCGCTGCAATTACATAGAGGAAATGCATGAACATGGTGGCTTTGGAAAGAATCATAGTATGAATTAA
Protein sequence

>MS.gene040945.t1

MALQRYLSFLMIMIYFVACYSTNLQEDPLSSIVENSPYINDGGTFKDFLMQSTDHVLSLKSKLGDTSPSSIKTFNVDEYGAQGDGKTDDTQAFKKVWQVACSSKGSVVVEAQKNYLVKPITFSGPCKSKTSDNPSDFKQDPTHWLMFDSVQKLSVKGGGTIDGNGNIWWQNSCKTNKKLPCKAAPTALTLYKCNNLVVEDLTVKNGQQIHVQFQNSANVRVSGLTVTAPEDSPNTDGIHVTNTQNIQISNSIIGTGDDCISIVNGTKNLKATDITCGPGHGISIGSLGEGGSKEFVSGITVNGAKLSRTTNGVRIKTWQGGSGSASNIKFQNIQMDNVTNPIIIDQNYCDQQSPCQKQKSAVQIRNVLYQNIKGTSASDVAMQFNCSQNFPCQGILLQNIGLELEGGGEAKASCNNVKLSYKGNVSPRCNYIEEMHEHGGFGKNHSMN