AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89735

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89735.t1 MTR_1g052315 93.987 449 16 1 11 448 1 449 0.0 861
MS.gene89735.t1 MTR_7g091850 65.548 447 134 9 1 430 1 444 0.0 547
MS.gene89735.t1 MTR_7g091840 58.869 389 133 7 1 373 1 378 1.87e-152 438
MS.gene89735.t1 MTR_2g060350 51.025 439 195 6 8 429 6 441 1.03e-147 428
MS.gene89735.t1 MTR_3g030540 49.772 438 197 4 7 430 8 436 9.94e-135 395
MS.gene89735.t1 MTR_2g103410 49.591 367 172 3 74 427 59 425 4.31e-121 360
MS.gene89735.t1 MTR_8g065030 47.536 345 169 3 75 407 66 410 2.27e-110 333
MS.gene89735.t1 MTR_6g005630 45.773 343 167 7 73 403 44 379 7.07e-97 298
MS.gene89735.t1 MTR_1g086390 42.898 352 176 7 74 402 81 430 1.27e-90 283
MS.gene89735.t1 MTR_4g094715 41.237 388 204 8 69 434 60 445 2.88e-89 279
MS.gene89735.t1 MTR_2g435640 40.263 380 206 7 65 427 44 419 6.50e-88 275
MS.gene89735.t1 MTR_2g103650 41.449 345 184 5 73 400 27 370 1.03e-87 273
MS.gene89735.t1 MTR_7g113910 41.417 367 150 5 50 414 31 334 2.55e-87 271
MS.gene89735.t1 MTR_7g110050 41.714 350 182 6 74 402 67 415 3.26e-86 271
MS.gene89735.t1 MTR_4g083660 42.933 375 196 8 67 428 2 371 1.72e-85 266
MS.gene89735.t1 MTR_4g084050 39.295 369 190 7 74 418 23 381 5.13e-84 263
MS.gene89735.t1 MTR_5g033680 38.743 382 213 7 65 427 50 429 1.88e-83 264
MS.gene89735.t1 MTR_2g049400 40.470 383 210 9 57 428 13 388 1.34e-82 259
MS.gene89735.t1 MTR_6g005630 42.857 343 154 9 73 403 44 356 1.45e-82 260
MS.gene89735.t1 MTR_5g034090 39.024 369 183 7 74 403 121 486 5.59e-82 262
MS.gene89735.t1 MTR_6g028080 38.727 377 195 8 62 417 22 383 6.23e-81 256
MS.gene89735.t1 MTR_8g065010 38.275 371 186 7 73 403 106 473 2.48e-80 258
MS.gene89735.t1 MTR_3g084360 37.433 374 209 6 62 418 12 377 3.32e-79 251
MS.gene89735.t1 MTR_3g054320 39.335 361 188 7 74 416 30 377 4.11e-79 251
MS.gene89735.t1 MTR_2g103410 48.263 259 121 3 74 319 59 317 7.31e-79 248
MS.gene89735.t1 MTR_3g438050 42.105 342 184 5 73 402 26 365 1.01e-78 250
MS.gene89735.t1 MTR_8g030930 40.650 369 195 7 72 423 25 386 4.61e-78 248
MS.gene89735.t1 MTR_3g084380 38.992 377 203 6 56 414 3 370 5.19e-77 245
MS.gene89735.t1 MTR_5g043350 38.320 381 207 8 56 417 11 382 1.48e-76 244
MS.gene89735.t1 MTR_8g009810 41.463 369 198 8 72 427 33 396 1.62e-76 244
MS.gene89735.t1 MTR_4g120320 38.133 375 207 10 72 427 50 418 2.16e-76 244
MS.gene89735.t1 MTR_2g032710 41.341 358 184 9 67 402 61 414 5.92e-76 244
MS.gene89735.t1 MTR_1g012390 37.838 370 209 7 73 427 27 390 4.25e-75 240
MS.gene89735.t1 MTR_1g088160 35.121 373 218 8 74 427 35 402 9.80e-75 240
MS.gene89735.t1 MTR_0157s0060 39.888 356 185 4 78 416 2 345 1.01e-74 238
MS.gene89735.t1 MTR_4g034020 39.888 356 185 4 78 416 2 345 1.01e-74 238
MS.gene89735.t1 MTR_8g010070 36.979 384 208 11 57 425 18 382 3.94e-70 227
MS.gene89735.t1 MTR_8g010040 37.127 369 204 8 73 428 31 384 1.83e-69 226
MS.gene89735.t1 MTR_8g010080 38.028 355 194 7 74 416 31 371 8.03e-69 224
MS.gene89735.t1 MTR_2g029170 37.725 334 193 6 106 428 29 358 9.20e-67 218
MS.gene89735.t1 MTR_8g010110 37.640 356 195 8 74 416 31 372 1.27e-66 218
MS.gene89735.t1 MTR_8g010090 36.798 356 198 8 74 416 31 372 1.38e-66 218
MS.gene89735.t1 MTR_2g058640 35.904 376 212 9 74 429 25 391 2.36e-66 218
MS.gene89735.t1 MTR_7g035415 39.016 305 162 6 74 364 40 334 2.60e-66 216
MS.gene89735.t1 MTR_8g008765 33.081 396 199 6 3 386 1 342 4.67e-66 215
MS.gene89735.t1 MTR_2g058840 33.938 386 226 9 63 429 14 389 2.35e-64 213
MS.gene89735.t1 MTR_1g013740 33.423 371 212 9 73 428 34 384 1.24e-63 210
MS.gene89735.t1 MTR_2g058670 33.505 388 227 9 63 429 14 391 1.14e-62 209
MS.gene89735.t1 MTR_1g013730 33.962 371 210 9 73 428 26 376 6.00e-62 206
MS.gene89735.t1 MTR_5g097860 34.006 347 206 9 47 378 2 340 1.83e-59 198
MS.gene89735.t1 MTR_8g077320 39.310 290 141 6 74 348 33 302 2.44e-59 198
MS.gene89735.t1 MTR_5g034090 38.246 285 136 5 74 319 121 404 3.13e-59 199
MS.gene89735.t1 MTR_5g063430 37.124 299 164 7 72 355 23 312 3.50e-55 186
MS.gene89735.t1 MTR_8g010050 33.628 339 162 8 74 398 31 320 1.07e-53 183
MS.gene89735.t1 MTR_8g008700 38.057 247 138 3 142 386 32 265 2.39e-49 170
MS.gene89735.t1 MTR_8g031180 39.791 191 110 1 205 390 73 263 4.24e-41 148
MS.gene89735.t1 MTR_2g100040 31.595 326 160 9 90 400 39 316 3.49e-40 147
MS.gene89735.t1 MTR_4g124980 24.292 424 259 14 73 448 73 482 5.27e-24 104
MS.gene89735.t1 MTR_2g042740 23.317 416 264 13 73 443 55 460 4.20e-22 99.0
MS.gene89735.t1 MTR_7g078680 24.249 433 264 13 54 434 29 449 1.47e-21 97.4
MS.gene89735.t1 MTR_7g088550 28.077 260 165 8 159 404 163 414 3.14e-21 96.3
MS.gene89735.t1 MTR_8g028725 24.638 414 242 14 73 434 54 449 3.91e-21 95.9
MS.gene89735.t1 MTR_3g096330 29.130 230 137 5 159 372 189 408 1.79e-20 94.7
MS.gene89735.t1 MTR_4g120730 23.544 395 237 13 72 417 38 416 1.24e-19 91.3
MS.gene89735.t1 MTR_8g098840 24.259 371 232 10 75 404 45 407 1.24e-19 91.3
MS.gene89735.t1 MTR_3g449590 23.500 400 249 12 73 427 46 433 2.70e-19 90.1
MS.gene89735.t1 MTR_1g100050 24.091 440 260 16 56 434 18 444 4.81e-19 89.7
MS.gene89735.t1 MTR_5g090160 22.739 387 248 10 68 411 36 414 7.24e-19 89.0
MS.gene89735.t1 MTR_2g435340 22.651 415 267 13 55 428 22 423 1.28e-18 88.2
MS.gene89735.t1 MTR_2g435340 22.523 333 212 8 133 428 35 358 4.28e-18 86.3
MS.gene89735.t1 MTR_1g100060 25.086 291 194 9 159 434 206 487 4.30e-18 87.0
MS.gene89735.t1 MTR_1g100040 24.746 295 198 9 159 438 169 454 5.85e-18 86.3
MS.gene89735.t1 MTR_1g099850 24.088 411 239 13 56 406 23 420 9.67e-18 85.9
MS.gene89735.t1 MTR_7g110710 28.179 291 182 11 159 434 156 434 1.57e-16 82.0
MS.gene89735.t1 MTR_7g110710 28.179 291 182 11 159 434 156 434 1.67e-16 82.0
MS.gene89735.t1 MTR_1g086030 28.626 262 151 7 159 391 91 345 2.13e-15 78.2
MS.gene89735.t1 MTR_1g086030 28.626 262 151 7 159 391 195 449 2.43e-15 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89735.t1 AT3G57510 53.288 441 174 11 5 429 6 430 1.25e-151 437
MS.gene89735.t1 AT3G07970 55.844 385 154 5 59 429 56 438 3.97e-149 432
MS.gene89735.t1 AT2G41850 56.281 398 152 8 47 430 42 431 1.53e-143 417
MS.gene89735.t1 AT1G70500 48.370 368 177 4 75 430 68 434 1.17e-118 355
MS.gene89735.t1 AT1G80170 47.606 376 183 4 66 427 45 420 2.87e-118 353
MS.gene89735.t1 AT1G23460 44.909 383 197 5 75 445 44 424 1.25e-109 331
MS.gene89735.t1 AT1G23460 44.909 383 197 5 75 445 68 448 1.82e-109 331
MS.gene89735.t1 AT1G56710 44.063 379 186 8 73 427 47 423 3.04e-96 296
MS.gene89735.t1 AT5G14650 44.669 347 175 7 73 407 50 391 1.55e-94 292
MS.gene89735.t1 AT2G43890 40.104 384 214 8 56 428 11 389 9.43e-90 278
MS.gene89735.t1 AT1G02460 42.818 362 178 9 74 409 89 447 1.15e-89 281
MS.gene89735.t1 AT2G43880 40.483 373 206 8 67 428 24 391 3.69e-89 277
MS.gene89735.t1 AT4G01890 40.730 356 183 9 73 402 64 417 9.36e-86 270
MS.gene89735.t1 AT3G15720 39.510 367 196 5 69 418 18 375 7.97e-85 268
MS.gene89735.t1 AT3G15720 39.510 367 196 5 69 418 19 376 8.37e-85 268
MS.gene89735.t1 AT3G26610 42.735 351 182 7 73 407 66 413 9.34e-85 268
MS.gene89735.t1 AT4G35670 39.889 361 194 6 72 417 22 374 2.91e-84 264
MS.gene89735.t1 AT4G18180 38.776 392 207 9 69 430 34 422 7.17e-84 264
MS.gene89735.t1 AT2G43860 41.287 373 198 10 57 416 19 383 1.26e-83 263
MS.gene89735.t1 AT1G48100 39.888 356 191 7 73 407 79 432 1.41e-83 265
MS.gene89735.t1 AT1G10640 41.622 370 176 8 72 403 117 484 1.64e-83 266
MS.gene89735.t1 AT1G05660 39.840 374 210 7 65 427 19 388 2.72e-83 261
MS.gene89735.t1 AT1G60590 39.353 371 182 7 74 403 123 491 2.00e-82 264
MS.gene89735.t1 AT1G43080 39.788 377 202 9 72 428 29 400 2.36e-82 259
MS.gene89735.t1 AT5G17200 39.494 395 191 7 58 417 26 407 2.62e-82 260
MS.gene89735.t1 AT3G15720 38.965 367 195 6 69 418 18 372 1.21e-81 259
MS.gene89735.t1 AT1G05650 39.305 374 212 7 65 427 19 388 1.22e-81 257
MS.gene89735.t1 AT5G44840 36.639 363 204 5 72 417 22 375 2.06e-81 256
MS.gene89735.t1 AT2G15460 39.257 377 204 9 72 428 29 400 2.17e-81 257
MS.gene89735.t1 AT1G43090 40.054 372 198 9 72 423 29 395 2.29e-81 258
MS.gene89735.t1 AT3G59850 42.733 344 180 8 72 402 65 404 1.64e-80 256
MS.gene89735.t1 AT3G59850 42.733 344 180 8 72 402 21 360 1.69e-80 254
MS.gene89735.t1 AT2G43870 40.426 376 205 10 67 429 14 383 2.05e-80 254
MS.gene89735.t1 AT1G43100 39.785 372 199 9 72 423 29 395 2.41e-80 256
MS.gene89735.t1 AT1G80170 46.816 267 129 3 66 319 45 311 3.06e-80 251
MS.gene89735.t1 AT2G15450 38.830 376 205 9 72 427 29 399 1.68e-79 252
MS.gene89735.t1 AT2G40310 39.523 377 203 10 72 428 29 400 2.14e-79 252
MS.gene89735.t1 AT2G15470 38.727 377 206 9 72 428 29 400 5.05e-79 251
MS.gene89735.t1 AT5G27530 37.569 362 195 4 72 418 51 396 5.17e-79 253
MS.gene89735.t1 AT2G33160 40.633 379 201 9 68 427 26 399 6.25e-79 258
MS.gene89735.t1 AT1G02790 37.731 379 205 10 73 429 51 420 7.16e-79 251
MS.gene89735.t1 AT1G65570 39.295 369 205 10 73 427 30 393 1.25e-78 249
MS.gene89735.t1 AT4G13760 38.196 377 208 9 72 428 29 400 1.13e-77 247
MS.gene89735.t1 AT1G78400 39.678 373 202 10 72 427 33 399 1.37e-77 247
MS.gene89735.t1 AT2G26620 38.933 375 206 9 72 428 29 398 3.31e-76 243
MS.gene89735.t1 AT1G17150 37.750 400 227 10 47 429 6 400 6.57e-76 243
MS.gene89735.t1 AT2G43880 41.254 303 163 7 67 358 24 322 1.99e-74 236
MS.gene89735.t1 AT3G07820 37.288 354 208 6 87 428 33 384 9.40e-74 237
MS.gene89735.t1 AT1G80140 38.824 340 182 7 105 427 2 332 2.13e-71 229
MS.gene89735.t1 AT3G15720 38.871 319 171 4 115 418 3 312 3.33e-71 230
MS.gene89735.t1 AT3G07840 36.066 366 220 7 75 428 22 385 1.08e-70 229
MS.gene89735.t1 AT3G07830 35.933 359 211 8 87 430 34 388 7.99e-70 227
MS.gene89735.t1 AT3G14040 37.500 368 214 8 73 427 70 434 1.72e-68 225
MS.gene89735.t1 AT5G48140 35.393 356 211 7 87 428 34 384 3.98e-68 222
MS.gene89735.t1 AT4G35670 41.241 274 153 2 144 417 2 267 3.53e-67 216
MS.gene89735.t1 AT4G32380 35.542 332 190 6 88 402 41 365 7.80e-67 221
MS.gene89735.t1 AT3G07850 36.292 383 226 9 58 427 56 433 9.31e-67 220
MS.gene89735.t1 AT5G14650 42.857 259 133 5 73 319 50 305 1.13e-65 213
MS.gene89735.t1 AT5G44830 35.241 332 183 4 101 417 2 316 1.83e-65 213
MS.gene89735.t1 AT5G39910 36.213 301 155 6 74 357 36 316 2.44e-57 193
MS.gene89735.t1 AT4G32375 35.034 294 181 4 144 434 13 299 5.34e-56 191
MS.gene89735.t1 AT4G32370 33.030 330 178 7 55 364 32 338 2.49e-53 182
MS.gene89735.t1 AT4G32380 35.088 285 161 7 88 357 41 316 2.59e-51 179
MS.gene89735.t1 AT3G42950 24.510 408 257 12 73 437 65 464 5.54e-24 104
MS.gene89735.t1 AT1G19170 22.196 419 266 12 73 443 86 492 3.98e-21 96.3
MS.gene89735.t1 AT3G62110 28.082 292 185 9 159 434 156 438 4.41e-20 92.8
MS.gene89735.t1 AT3G62110 28.082 292 185 9 159 434 156 438 4.41e-20 92.8
MS.gene89735.t1 AT4G33440 26.667 285 180 8 159 427 185 456 1.48e-19 91.3
MS.gene89735.t1 AT4G23820 23.873 377 225 11 74 403 41 402 4.00e-19 89.7
MS.gene89735.t1 AT5G41870 25.070 355 212 8 72 382 43 387 9.93e-19 88.6
MS.gene89735.t1 AT5G49215 24.804 383 228 11 68 405 38 405 2.59e-18 87.4
MS.gene89735.t1 AT5G49215 24.804 383 228 11 68 405 40 407 3.17e-18 87.0
MS.gene89735.t1 AT4G23500 24.566 403 252 16 75 434 69 462 1.92e-17 85.1
MS.gene89735.t1 AT3G61490 26.255 259 170 5 159 404 173 423 3.06e-17 84.3
MS.gene89735.t1 AT3G61490 26.255 259 170 5 159 404 158 408 3.24e-17 84.3
MS.gene89735.t1 AT3G61490 26.255 259 170 5 159 404 158 408 3.24e-17 84.3
MS.gene89735.t1 AT3G61490 26.255 259 170 5 159 404 158 408 3.24e-17 84.3
MS.gene89735.t1 AT3G48950 24.510 408 245 17 76 434 47 440 3.71e-17 84.0
MS.gene89735.t1 AT3G61490 25.912 274 181 6 159 418 271 536 4.84e-17 84.0
MS.gene89735.t1 AT2G23900 23.810 378 228 12 76 406 58 422 7.53e-17 83.2
MS.gene89735.t1 AT3G06770 22.074 376 241 11 66 400 38 402 8.23e-16 79.7
MS.gene89735.t1 AT3G06770 22.074 376 241 11 66 400 39 403 1.02e-15 79.3
MS.gene89735.t1 AT3G06770 22.408 299 187 7 139 400 43 333 9.30e-14 73.2
MS.gene89735.t1 AT3G06770 22.408 299 187 7 139 400 43 333 9.30e-14 73.2
MS.gene89735.t1 AT3G06770 22.000 300 189 7 138 400 24 315 1.49e-13 72.4
MS.gene89735.t1 AT3G16850 22.034 413 251 14 65 428 34 424 9.51e-13 70.5

Find 106 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCCAATGTTAGAGTTTC+AGG 0.109253 1.3:-34718177 MS.gene89735:CDS
CTCTAACATTGGCAGAATTT+TGG 0.120610 1.3:+34718184 None:intergenic
GTCTGTAGCTTTAAGATTCT+TGG 0.197453 1.3:+34717793 None:intergenic
TCCATACTCATCAACATTAA+AGG 0.219267 1.3:+34719675 None:intergenic
GGCTCCAAGGAATTTGTTTC+AGG 0.236001 1.3:-34717621 MS.gene89735:CDS
CAAATCTCAAACTCTATTAT+AGG 0.237072 1.3:-34718084 MS.gene89735:CDS
ACCTTTAATGTTGATGAGTA+TGG 0.261303 1.3:-34719676 MS.gene89735:CDS
GCAAGTAGCATGTTCTTCTA+AGG 0.264701 1.3:-34718985 MS.gene89735:CDS
GATTGTATATCAATTGTAAA+TGG 0.295701 1.3:-34717818 MS.gene89735:CDS
GTTCCACCATCATTTATATA+AGG 0.305190 1.3:+34719784 None:intergenic
GTAGTTCTGATCTATTATTA+TGG 0.307310 1.3:+34717340 None:intergenic
GCGGACCAGGCCATGGTATC+AGG 0.313392 1.3:-34717763 MS.gene89735:intron
ATGCATGAACTTGGTGGCTT+TGG 0.315794 1.3:-34716596 MS.gene89735:CDS
GTTCAGAAACTATCTGTTAA+AGG 0.325425 1.3:-34718795 MS.gene89735:CDS
GTGTTGTACCAAAACATAAA+AGG 0.327486 1.3:-34716800 MS.gene89735:CDS
TAGTTCTGATCTATTATTAT+GGG 0.332650 1.3:+34717341 None:intergenic
CTCCTCCACCTTCAAGTTCA+AGG 0.349095 1.3:+34716696 None:intergenic
TTGATGGAAATGGAAATATT+TGG 0.351336 1.3:-34718761 MS.gene89735:CDS
TTCTTCAGCATTGGAAGCTT+AGG 0.370444 1.3:-34717651 MS.gene89735:intron
TTCAGGCATTCAAGAAGGTT+TGG 0.372209 1.3:-34719007 MS.gene89735:intron
AATATTTCCATTTCCATCAA+TGG 0.376826 1.3:+34718764 None:intergenic
CAAGGGCCAGAGAATGTGAT+TGG 0.378062 1.3:+34718921 None:intergenic
CTATAATAGAGTTTGAGATT+TGG 0.389461 1.3:+34718085 None:intergenic
TATTCCTGAAACAAATTCCT+TGG 0.399944 1.3:+34717617 None:intergenic
TCTTCAGCATTGGAAGCTTA+GGG 0.402452 1.3:-34717650 MS.gene89735:intron
TCAAACTCTATTATAGGAAC+TGG 0.409611 1.3:-34718078 MS.gene89735:intron
TGAATGAGAGATATCTTTGC+AGG 0.413357 1.3:+34719887 None:intergenic
ATATGAATGCAGGGTGGGTC+AGG 0.415176 1.3:-34717416 MS.gene89735:intron
ACATGAATTCCATCAGTGTT+TGG 0.417169 1.3:+34718126 None:intergenic
TCCCTTGACATGGAAAGTTC+TGG 0.419206 1.3:+34716738 None:intergenic
TTCCTCTATGTAATTGCAGC+GGG 0.427217 1.3:+34716619 None:intergenic
TAAATTTCAGAACATTCAAA+TGG 0.430371 1.3:-34717378 MS.gene89735:CDS
ACAGAGTCCATGCCAAAATC+AGG 0.431144 1.3:-34717309 MS.gene89735:intron
TTGAGCTTAAAGAGCAAGTT+GGG 0.436288 1.3:-34719724 MS.gene89735:CDS
GTTTCAGGAATAACCGTGAA+TGG 0.437865 1.3:-34717606 MS.gene89735:CDS
GTTAAGCCAATCACATTCTC+TGG 0.439218 1.3:-34718927 MS.gene89735:CDS
TCAGTGTTTGGACTGTCCTC+TGG 0.447845 1.3:+34718138 None:intergenic
GGGTCTTGTTTGTAATCAGA+TGG 0.451683 1.3:+34718843 None:intergenic
GATACCATGGCCTGGTCCGC+AGG 0.454864 1.3:+34717766 None:intergenic
CATTGGAAGCTTAGGGGAAG+GGG 0.456092 1.3:-34717643 MS.gene89735:CDS
AAATTATCTAGAACTACTAA+TGG 0.458878 1.3:-34717579 MS.gene89735:CDS
AAAGGTGGTGGAACCATTGA+TGG 0.472710 1.3:-34718777 MS.gene89735:CDS
GCATTGGAAGCTTAGGGGAA+GGG 0.477753 1.3:-34717644 MS.gene89735:CDS
AGATAATTTAGCTCCATTCA+CGG 0.478739 1.3:+34717593 None:intergenic
AAACTATCTGTTAAAGGTGG+TGG 0.483003 1.3:-34718789 MS.gene89735:CDS
TTCTAAGGGATCAGTTGTTG+TGG 0.483133 1.3:-34718970 MS.gene89735:CDS
TTAATTATTACCTGATACCA+TGG 0.483681 1.3:+34717753 None:intergenic
AAATGATGGTGGAACATTCA+AGG 0.487514 1.3:-34719776 MS.gene89735:CDS
GGTGGAACCATTGATGGAAA+TGG 0.493031 1.3:-34718771 MS.gene89735:CDS
AACATAGGCCTTGAACTTGA+AGG 0.502751 1.3:-34716704 MS.gene89735:CDS
TTCTCAACAATTGAACTAAG+TGG 0.507272 1.3:+34719811 None:intergenic
GCGATACTCTTTGATTTGCA+AGG 0.510241 1.3:+34718903 None:intergenic
AGCCAGAACTTTCCATGTCA+AGG 0.511075 1.3:-34716740 MS.gene89735:CDS
AATTCACCTTATATAAATGA+TGG 0.521530 1.3:-34719790 MS.gene89735:CDS
ACTCTTTCAGGCATTCAAGA+AGG 0.522730 1.3:-34719012 MS.gene89735:intron
CGATACTCTTTGATTTGCAA+GGG 0.524135 1.3:+34718904 None:intergenic
GGTCTTGTTTGTAATCAGAT+GGG 0.528261 1.3:+34718844 None:intergenic
AGAAATCTGCGGTTCAGATA+AGG 0.532659 1.3:-34716826 MS.gene89735:CDS
ACAGACATAACCTGCGGACC+AGG 0.533274 1.3:-34717776 MS.gene89735:CDS
TGAAGGTGGAGGAGAGGCTA+AGG 0.539282 1.3:-34716687 MS.gene89735:CDS
CAAGTAGCATGTTCTTCTAA+GGG 0.541141 1.3:-34718984 MS.gene89735:CDS
TTTGTACAAGTGCAACAACT+TGG 0.542026 1.3:-34718256 MS.gene89735:CDS
TTTGAGCTTAAAGAGCAAGT+TGG 0.542591 1.3:-34719725 MS.gene89735:CDS
GAGGAAATGCATGAACTTGG+TGG 0.545083 1.3:-34716602 MS.gene89735:CDS
ATAGAGGAAATGCATGAACT+TGG 0.551435 1.3:-34716605 MS.gene89735:CDS
GAGACCTGAAACTCTAACAT+TGG 0.552158 1.3:+34718173 None:intergenic
GTGCAACAACTTGGTAGTTG+AGG 0.556209 1.3:-34718247 MS.gene89735:CDS
GCCTTGCAAGGATGCCCCTA+CGG 0.557249 1.3:-34718596 MS.gene89735:intron
TAAGGGATCAGTTGTTGTGG+AGG 0.563380 1.3:-34718967 MS.gene89735:CDS
GGCCTTGAACTTGAAGGTGG+AGG 0.563529 1.3:-34716698 MS.gene89735:CDS
GAGTATGGAGCCCAAGGAGA+TGG 0.566321 1.3:-34719661 MS.gene89735:CDS
AGCATTGGAAGCTTAGGGGA+AGG 0.569506 1.3:-34717645 MS.gene89735:CDS
TTATAGTACTAATTTGCAAG+AGG 0.571317 1.3:-34719836 MS.gene89735:CDS
ATGGAAATGGAAATATTTGG+TGG 0.572083 1.3:-34718758 MS.gene89735:CDS
ATCAAACATAAGCCAATGTG+TGG 0.580117 1.3:+34718821 None:intergenic
TATTACCTGATACCATGGCC+TGG 0.582738 1.3:+34717758 None:intergenic
TCTCAACAATTGAACTAAGT+GGG 0.583139 1.3:+34719812 None:intergenic
GCCAGAACTTTCCATGTCAA+GGG 0.588404 1.3:-34716739 MS.gene89735:CDS
ACCGTAGGGGCATCCTTGCA+AGG 0.590090 1.3:+34718595 None:intergenic
CTTCAGCATTGGAAGCTTAG+GGG 0.590202 1.3:-34717649 MS.gene89735:intron
ATAACCTGCGGACCAGGCCA+TGG 0.595581 1.3:-34717770 MS.gene89735:CDS
AGTAAGAATTAAGACATGGC+AGG 0.596688 1.3:-34717556 MS.gene89735:intron
TTTCCTCTATGTAATTGCAG+CGG 0.596917 1.3:+34716618 None:intergenic
TGCAATAGTATCCCTTGACA+TGG 0.597330 1.3:+34716728 None:intergenic
GTTGATGAGTATGGAGCCCA+AGG 0.600408 1.3:-34719667 MS.gene89735:CDS
TCACCTTATATAAATGATGG+TGG 0.605269 1.3:-34719787 MS.gene89735:CDS
TTGGTAATTGCAGAAATCTG+CGG 0.605924 1.3:-34716837 MS.gene89735:intron
GAATGAGAGATATCTTTGCA+GGG 0.608028 1.3:+34719888 None:intergenic
AATGTGAAATTGTCATACAA+AGG 0.609811 1.3:-34716653 MS.gene89735:CDS
TCCTCTATGTAATTGCAGCG+GGG 0.612427 1.3:+34716620 None:intergenic
AGTTCTGATCTATTATTATG+GGG 0.613425 1.3:+34717342 None:intergenic
CCTCTATGTAATTGCAGCGG+GGG 0.614683 1.3:+34716621 None:intergenic
GAGGACAGTCCAAACACTGA+TGG 0.616282 1.3:-34718135 MS.gene89735:CDS
ATTGGAAGCTTAGGGGAAGG+GGG 0.617129 1.3:-34717642 MS.gene89735:CDS
GGGATACTATTGCAGAACAT+AGG 0.621368 1.3:-34716719 MS.gene89735:CDS
TGAACTTGAAGGTGGAGGAG+AGG 0.630050 1.3:-34716693 MS.gene89735:CDS
CAGAAACTATCTGTTAAAGG+TGG 0.634288 1.3:-34718792 MS.gene89735:CDS
TCAAACATAAGCCAATGTGT+GGG 0.646752 1.3:+34718822 None:intergenic
ACAAACAAGACCCCACACAT+TGG 0.647737 1.3:-34718833 MS.gene89735:CDS
ATAGGCCTTGAACTTGAAGG+TGG 0.654657 1.3:-34716701 MS.gene89735:CDS
TCTCACTGTGACAGCACCAG+AGG 0.657720 1.3:-34718154 MS.gene89735:CDS
CAAACATAAGCCAATGTGTG+GGG 0.674734 1.3:+34718823 None:intergenic
TGGTAAAACTGATGACACAC+AGG 0.675901 1.3:-34719641 MS.gene89735:intron
ATGGAGTAAGAATTAAGACA+TGG 0.710644 1.3:-34717560 MS.gene89735:CDS
AAAGCTACAGACATAACCTG+CGG 0.746432 1.3:-34717782 MS.gene89735:CDS
TTATACTATACATACCGTAG+GGG 0.751323 1.3:+34718582 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAAAAATTTAATATAT+TGG + chr1.3:34717920-34717939 None:intergenic 0.0%
!! ATAAATTAAAAAAAAAAAAA+TGG + chr1.3:34717253-34717272 None:intergenic 0.0%
!!! TTTTATTTTTTAAAATTTTT+TGG + chr1.3:34717331-34717350 None:intergenic 0.0%
!! ATTTGGTTAATTAATTAATT+TGG - chr1.3:34719610-34719629 MS.gene89735:intron 10.0%
!! TAAAATTTATGTTAAGTAAA+TGG + chr1.3:34717804-34717823 None:intergenic 10.0%
!! TATTAATGTCAATTATATTA+TGG - chr1.3:34718166-34718185 MS.gene89735:CDS 10.0%
!!! ACTTATTAATTTGATATTTA+TGG + chr1.3:34717069-34717088 None:intergenic 10.0%
!!! TTTTTTTTAAGAATCAAAAA+TGG - chr1.3:34719314-34719333 MS.gene89735:intron 10.0%
!! ATAGATATTATTAAGTGTAT+TGG + chr1.3:34719020-34719039 None:intergenic 15.0%
!! ATTAATTAACCAAATTAGTT+TGG + chr1.3:34719605-34719624 None:intergenic 15.0%
!! TAAGATGAAGATATTATTAA+AGG + chr1.3:34718746-34718765 None:intergenic 15.0%
!! TAGATATTATTAAGTGTATT+GGG + chr1.3:34719019-34719038 None:intergenic 15.0%
!!! AAAAATTTAATACCTGATTT+TGG + chr1.3:34719172-34719191 None:intergenic 15.0%
!!! ATTTAAATTTTTCAAAGAAG+TGG + chr1.3:34718448-34718467 None:intergenic 15.0%
!!! ATTTTATTCTTTTGCTAATA+TGG - chr1.3:34717350-34717369 MS.gene89735:CDS 15.0%
!!! TATGATAGATATTTTAGAAA+AGG + chr1.3:34719541-34719560 None:intergenic 15.0%
!!! TATTTTAATTTTACTCTTTC+AGG - chr1.3:34717442-34717461 MS.gene89735:intron 15.0%
!! AAAAACAACTTGTAAGAAAA+TGG + chr1.3:34716982-34717001 None:intergenic 20.0%
!! AATGTTAGAGATGTTAAAAT+TGG - chr1.3:34717224-34717243 MS.gene89735:intron 20.0%
!! AATTCACCTTATATAAATGA+TGG - chr1.3:34716676-34716695 MS.gene89735:CDS 20.0%
!! ACTTATTACATTTCTACAAA+AGG + chr1.3:34717041-34717060 None:intergenic 20.0%
!! AGTGTACAAAAAAAAAAATG+AGG + chr1.3:34718978-34718997 None:intergenic 20.0%
!! ATACATATATATATGAATGC+AGG - chr1.3:34719040-34719059 MS.gene89735:intron 20.0%
!! GATGATAAAAATAATTCTAG+CGG - chr1.3:34717287-34717306 MS.gene89735:intron 20.0%
!! GATTGTATATCAATTGTAAA+TGG - chr1.3:34718648-34718667 MS.gene89735:intron 20.0%
!! GTAAAAAAAAATTACTCCAA+TGG - chr1.3:34718136-34718155 MS.gene89735:CDS 20.0%
!! TAAATTTCAGAACATTCAAA+TGG - chr1.3:34719088-34719107 MS.gene89735:intron 20.0%
!! TACATATATATATGAATGCA+GGG - chr1.3:34719041-34719060 MS.gene89735:intron 20.0%
!! TTGTTTGTCAAAAAAAAAGT+AGG + chr1.3:34718079-34718098 None:intergenic 20.0%
!! TTTAAATATGTTTGTTTGCA+GGG - chr1.3:34718622-34718641 MS.gene89735:intron 20.0%
!!! AAATTATCTAGAACTACTAA+TGG - chr1.3:34718887-34718906 MS.gene89735:intron 20.0%
!!! ATTTTGAACTACTTCAATTT+AGG - chr1.3:34718952-34718971 MS.gene89735:CDS 20.0%
!!! GTTAGTGTTGATATAAAATT+TGG - chr1.3:34719281-34719300 MS.gene89735:intron 20.0%
!!! GTTGTTTTTATAAGCTATTA+TGG - chr1.3:34716993-34717012 MS.gene89735:intron 20.0%
!!! TAGTTCTGATCTATTATTAT+GGG + chr1.3:34719128-34719147 None:intergenic 20.0%
!!! TATTTTGACAAACTTGAATA+AGG - chr1.3:34716858-34716877 MS.gene89735:intron 20.0%
! AATATTTCCATTTCCATCAA+TGG + chr1.3:34717705-34717724 None:intergenic 25.0%
! AATGTGAAATTGTCATACAA+AGG - chr1.3:34719813-34719832 MS.gene89735:CDS 25.0%
! AGATTGTATTGTATATACAC+GGG - chr1.3:34717953-34717972 MS.gene89735:intron 25.0%
! AGGATTTGACTGTAAAAAAT+GGG - chr1.3:34718239-34718258 MS.gene89735:CDS 25.0%
! AGGTTAAGTATAATTCTTTG+TGG + chr1.3:34719521-34719540 None:intergenic 25.0%
! CAAATCTCAAACTCTATTAT+AGG - chr1.3:34718382-34718401 MS.gene89735:intron 25.0%
! GAGATTGTATTGTATATACA+CGG - chr1.3:34717952-34717971 MS.gene89735:intron 25.0%
! GTTTAAATATGTTTGTTTGC+AGG - chr1.3:34718621-34718640 MS.gene89735:intron 25.0%
! TATAAAGAGTTGTCACAAAA+TGG + chr1.3:34716916-34716935 None:intergenic 25.0%
! TCTTTCATTCCAAACTAATT+TGG - chr1.3:34719593-34719612 MS.gene89735:intron 25.0%
! TTAAATATGTTTGTTTGCAG+GGG - chr1.3:34718623-34718642 MS.gene89735:intron 25.0%
! TTAAGTATAATTCTTTGTGG+TGG + chr1.3:34719518-34719537 None:intergenic 25.0%
! TTAATTATTACCTGATACCA+TGG + chr1.3:34718716-34718735 None:intergenic 25.0%
! TTGATGGAAATGGAAATATT+TGG - chr1.3:34717705-34717724 MS.gene89735:intron 25.0%
!! ACATTAATATTTTGCACCAT+TGG + chr1.3:34718155-34718174 None:intergenic 25.0%
!! AGTTCTGATCTATTATTATG+GGG + chr1.3:34719127-34719146 None:intergenic 25.0%
!! ATATTATGGTTTGACTTTGT+AGG - chr1.3:34718180-34718199 MS.gene89735:CDS 25.0%
!! CTATAATAGAGTTTGAGATT+TGG + chr1.3:34718384-34718403 None:intergenic 25.0%
!! GTATAACATTAGAACTTGTT+TGG + chr1.3:34717096-34717115 None:intergenic 25.0%
!! TTATAGTACTAATTTGCAAG+AGG - chr1.3:34716630-34716649 MS.gene89735:CDS 25.0%
!!! GTAGTTCTGATCTATTATTA+TGG + chr1.3:34719129-34719148 None:intergenic 25.0%
!!! TTAAAGGTTTTAATCGATGA+AGG + chr1.3:34716778-34716797 None:intergenic 25.0%
AAACTTGAATAAGGTCGATT+TGG - chr1.3:34716867-34716886 MS.gene89735:intron 30.0%
AGTTATACTATACATACCGT+AGG + chr1.3:34717889-34717908 None:intergenic 30.0%
ATATATATATGAATGCAGGG+TGG - chr1.3:34719044-34719063 MS.gene89735:intron 30.0%
ATGGAAATGGAAATATTTGG+TGG - chr1.3:34717708-34717727 MS.gene89735:intron 30.0%
ATGGAGTAAGAATTAAGACA+TGG - chr1.3:34718906-34718925 MS.gene89735:intron 30.0%
CCAATTACTTTATGCTAAGT+AGG + chr1.3:34718108-34718127 None:intergenic 30.0%
CCTACTTAGCATAAAGTAAT+TGG - chr1.3:34718105-34718124 MS.gene89735:CDS 30.0%
GAGGATTTGACTGTAAAAAA+TGG - chr1.3:34718238-34718257 MS.gene89735:CDS 30.0%
GATAATTCATTCTTCAGCAT+TGG - chr1.3:34718806-34718825 MS.gene89735:CDS 30.0%
GTGTTGTACCAAAACATAAA+AGG - chr1.3:34719666-34719685 MS.gene89735:CDS 30.0%
GTTATACTATACATACCGTA+GGG + chr1.3:34717888-34717907 None:intergenic 30.0%
GTTCAGAAACTATCTGTTAA+AGG - chr1.3:34717671-34717690 MS.gene89735:intron 30.0%
GTTCCACCATCATTTATATA+AGG + chr1.3:34716685-34716704 None:intergenic 30.0%
TATATATATGAATGCAGGGT+GGG - chr1.3:34719045-34719064 MS.gene89735:intron 30.0%
TATTCCTGAAACAAATTCCT+TGG + chr1.3:34718852-34718871 None:intergenic 30.0%
TCAAACTCTATTATAGGAAC+TGG - chr1.3:34718388-34718407 MS.gene89735:intron 30.0%
TCACCTTATATAAATGATGG+TGG - chr1.3:34716679-34716698 MS.gene89735:CDS 30.0%
TCCATACTCATCAACATTAA+AGG + chr1.3:34716794-34716813 None:intergenic 30.0%
TCTCAACAATTGAACTAAGT+GGG + chr1.3:34716657-34716676 None:intergenic 30.0%
TTATACTATACATACCGTAG+GGG + chr1.3:34717887-34717906 None:intergenic 30.0%
TTCTCAACAATTGAACTAAG+TGG + chr1.3:34716658-34716677 None:intergenic 30.0%
! ACCTTTAATGTTGATGAGTA+TGG - chr1.3:34716790-34716809 MS.gene89735:CDS 30.0%
! AGATAATTTAGCTCCATTCA+CGG + chr1.3:34718876-34718895 None:intergenic 30.0%
! CACTTGTTCCTTTTATGTTT+TGG + chr1.3:34719677-34719696 None:intergenic 30.0%
!! TTTAATACCTGATTTTGGCA+TGG + chr1.3:34719167-34719186 None:intergenic 30.0%
AAACTATCTGTTAAAGGTGG+TGG - chr1.3:34717677-34717696 MS.gene89735:intron 35.0%
ACATGAATTCCATCAGTGTT+TGG + chr1.3:34718343-34718362 None:intergenic 35.0%
ACTCGTGCCATAAACAAAAT+TGG - chr1.3:34719476-34719495 MS.gene89735:intron 35.0%
AGTAAGAATTAAGACATGGC+AGG - chr1.3:34718910-34718929 MS.gene89735:CDS 35.0%
ATAGAGGAAATGCATGAACT+TGG - chr1.3:34719861-34719880 MS.gene89735:CDS 35.0%
ATCAAACATAAGCCAATGTG+TGG + chr1.3:34717648-34717667 None:intergenic 35.0%
CAACACTAACAACGATTACA+TGG + chr1.3:34719271-34719290 None:intergenic 35.0%
CAAGTAGCATGTTCTTCTAA+GGG - chr1.3:34717482-34717501 MS.gene89735:intron 35.0%
CAGAAACTATCTGTTAAAGG+TGG - chr1.3:34717674-34717693 MS.gene89735:intron 35.0%
GAATGAGAGATATCTTTGCA+GGG + chr1.3:34716581-34716600 None:intergenic 35.0%
TCAAACATAAGCCAATGTGT+GGG + chr1.3:34717647-34717666 None:intergenic 35.0%
TCGATACCCAAACAAAGTAA+CGG - chr1.3:34719438-34719457 MS.gene89735:intron 35.0%
TGAATGAGAGATATCTTTGC+AGG + chr1.3:34716582-34716601 None:intergenic 35.0%
TTGAGCTTAAAGAGCAAGTT+GGG - chr1.3:34716742-34716761 MS.gene89735:CDS 35.0%
TTTCCTCTATGTAATTGCAG+CGG + chr1.3:34719851-34719870 None:intergenic 35.0%
TTTGAGCTTAAAGAGCAAGT+TGG - chr1.3:34716741-34716760 MS.gene89735:CDS 35.0%
TTTGTACAAGTGCAACAACT+TGG - chr1.3:34718210-34718229 MS.gene89735:CDS 35.0%
! ATCAGTTTTACCATCTCCTT+GGG + chr1.3:34716818-34716837 None:intergenic 35.0%
! CTCTAACATTGGCAGAATTT+TGG + chr1.3:34718285-34718304 None:intergenic 35.0%
! GATTTGGATGTTTTCAGTGT+TGG + chr1.3:34718368-34718387 None:intergenic 35.0%
! TTGGTAATTGCAGAAATCTG+CGG - chr1.3:34719629-34719648 MS.gene89735:intron 35.0%
!! AAATGATGGTGGAACATTCA+AGG - chr1.3:34716690-34716709 MS.gene89735:CDS 35.0%
!! CACAAGGCCAATTTTGTTTA+TGG + chr1.3:34719486-34719505 None:intergenic 35.0%
!! CGATACTCTTTGATTTGCAA+GGG + chr1.3:34717565-34717584 None:intergenic 35.0%
!! GGTCTTGTTTGTAATCAGAT+GGG + chr1.3:34717625-34717644 None:intergenic 35.0%
!! GTCTGTAGCTTTAAGATTCT+TGG + chr1.3:34718676-34718695 None:intergenic 35.0%
AAAGCTACAGACATAACCTG+CGG - chr1.3:34718684-34718703 MS.gene89735:intron 40.0%
AACATAGGCCTTGAACTTGA+AGG - chr1.3:34719762-34719781 MS.gene89735:CDS 40.0%
ACTCTTTCAGGCATTCAAGA+AGG - chr1.3:34717454-34717473 MS.gene89735:intron 40.0%
AGAAATCTGCGGTTCAGATA+AGG - chr1.3:34719640-34719659 MS.gene89735:intron 40.0%
CAAACATAAGCCAATGTGTG+GGG + chr1.3:34717646-34717665 None:intergenic 40.0%
CGATACCCAAACAAAGTAAC+GGG - chr1.3:34719439-34719458 MS.gene89735:intron 40.0%
GAGACCTGAAACTCTAACAT+TGG + chr1.3:34718296-34718315 None:intergenic 40.0%
GATGAAGCTTCTTTAGCACA+AGG - chr1.3:34719354-34719373 MS.gene89735:intron 40.0%
GCAAGTAGCATGTTCTTCTA+AGG - chr1.3:34717481-34717500 MS.gene89735:intron 40.0%
GGGATACTATTGCAGAACAT+AGG - chr1.3:34719747-34719766 MS.gene89735:CDS 40.0%
GTTAAGCCAATCACATTCTC+TGG - chr1.3:34717539-34717558 MS.gene89735:intron 40.0%
GTTTCAGGAATAACCGTGAA+TGG - chr1.3:34718860-34718879 MS.gene89735:intron 40.0%
TATTGTATATACACGGGTCG+AGG - chr1.3:34717959-34717978 MS.gene89735:intron 40.0%
TCTGCCAATGTTAGAGTTTC+AGG - chr1.3:34718289-34718308 MS.gene89735:intron 40.0%
TGCAATAGTATCCCTTGACA+TGG + chr1.3:34719741-34719760 None:intergenic 40.0%
TGGTAAAACTGATGACACAC+AGG - chr1.3:34716825-34716844 MS.gene89735:CDS 40.0%
TTCAGGCATTCAAGAAGGTT+TGG - chr1.3:34717459-34717478 MS.gene89735:intron 40.0%
TTCCTCTATGTAATTGCAGC+GGG + chr1.3:34719850-34719869 None:intergenic 40.0%
TTGTTTATGGCACGAGTAGA+TGG + chr1.3:34719473-34719492 None:intergenic 40.0%
! ATGGGTTATCTGATGCTACA+AGG + chr1.3:34717607-34717626 None:intergenic 40.0%
! CATCAGTTTTACCATCTCCT+TGG + chr1.3:34716819-34716838 None:intergenic 40.0%
! TCGAACCCGTTACTTTGTTT+GGG + chr1.3:34719447-34719466 None:intergenic 40.0%
! TCTTCAGCATTGGAAGCTTA+GGG - chr1.3:34718816-34718835 MS.gene89735:CDS 40.0%
! TTCTAAGGGATCAGTTGTTG+TGG - chr1.3:34717496-34717515 MS.gene89735:intron 40.0%
! TTCTTCAGCATTGGAAGCTT+AGG - chr1.3:34718815-34718834 MS.gene89735:CDS 40.0%
!! GCGATACTCTTTGATTTGCA+AGG + chr1.3:34717566-34717585 None:intergenic 40.0%
!! GGGTCTTGTTTGTAATCAGA+TGG + chr1.3:34717626-34717645 None:intergenic 40.0%
ACAAACAAGACCCCACACAT+TGG - chr1.3:34717633-34717652 MS.gene89735:CDS 45.0%
ACAGAGTCCATGCCAAAATC+AGG - chr1.3:34719157-34719176 MS.gene89735:intron 45.0%
AGCCAGAACTTTCCATGTCA+AGG - chr1.3:34719726-34719745 MS.gene89735:CDS 45.0%
AGTATCGCAGTTCAGATCTC+TGG - chr1.3:34717578-34717597 MS.gene89735:CDS 45.0%
ATAGGCCTTGAACTTGAAGG+TGG - chr1.3:34719765-34719784 MS.gene89735:CDS 45.0%
CAGTGACTGCTTGTTCTTTG+GGG + chr1.3:34719396-34719415 None:intergenic 45.0%
GAGGAAATGCATGAACTTGG+TGG - chr1.3:34719864-34719883 MS.gene89735:CDS 45.0%
GCAGTGACTGCTTGTTCTTT+GGG + chr1.3:34719397-34719416 None:intergenic 45.0%
GCCAGAACTTTCCATGTCAA+GGG - chr1.3:34719727-34719746 MS.gene89735:CDS 45.0%
GGTGGAACCATTGATGGAAA+TGG - chr1.3:34717695-34717714 MS.gene89735:intron 45.0%
TAAGGGATCAGTTGTTGTGG+AGG - chr1.3:34717499-34717518 MS.gene89735:intron 45.0%
TATTACCTGATACCATGGCC+TGG + chr1.3:34718711-34718730 None:intergenic 45.0%
TCCCTTGACATGGAAAGTTC+TGG + chr1.3:34719731-34719750 None:intergenic 45.0%
TCCTCTATGTAATTGCAGCG+GGG + chr1.3:34719849-34719868 None:intergenic 45.0%
TGCAGTGACTGCTTGTTCTT+TGG + chr1.3:34719398-34719417 None:intergenic 45.0%
TTTATGGCACGAGTAGATGG+TGG + chr1.3:34719470-34719489 None:intergenic 45.0%
! ATGCATGAACTTGGTGGCTT+TGG - chr1.3:34719870-34719889 MS.gene89735:CDS 45.0%
! CTTCAGCATTGGAAGCTTAG+GGG - chr1.3:34718817-34718836 MS.gene89735:CDS 45.0%
! GGCTCCAAGGAATTTGTTTC+AGG - chr1.3:34718845-34718864 MS.gene89735:CDS 45.0%
! GTCGAACCCGTTACTTTGTT+TGG + chr1.3:34719448-34719467 None:intergenic 45.0%
! GTGCAACAACTTGGTAGTTG+AGG - chr1.3:34718219-34718238 MS.gene89735:CDS 45.0%
! TTCTCTTTTGCAGCCTTGCA+AGG - chr1.3:34717858-34717877 MS.gene89735:intron 45.0%
!! AAAGGTGGTGGAACCATTGA+TGG - chr1.3:34717689-34717708 MS.gene89735:intron 45.0%
!! TAATTTATAATCAAATATTA+TGG - chr1.3:34719230-34719249 MS.gene89735:intron 5.0%
ATATGAATGCAGGGTGGGTC+AGG - chr1.3:34719050-34719069 MS.gene89735:intron 50.0%
ATTGGAAGCTTAGGGGAAGG+GGG - chr1.3:34718824-34718843 MS.gene89735:CDS 50.0%
CAAGGGCCAGAGAATGTGAT+TGG + chr1.3:34717548-34717567 None:intergenic 50.0%
CATTGGAAGCTTAGGGGAAG+GGG - chr1.3:34718823-34718842 MS.gene89735:CDS 50.0%
CCTCTATGTAATTGCAGCGG+GGG + chr1.3:34719848-34719867 None:intergenic 50.0%
GAGGACAGTCCAAACACTGA+TGG - chr1.3:34718331-34718350 MS.gene89735:intron 50.0%
GCATTGGAAGCTTAGGGGAA+GGG - chr1.3:34718822-34718841 MS.gene89735:CDS 50.0%
TCAGTGTTTGGACTGTCCTC+TGG + chr1.3:34718331-34718350 None:intergenic 50.0%
TGAACTTGAAGGTGGAGGAG+AGG - chr1.3:34719773-34719792 MS.gene89735:CDS 50.0%
! AGCATTGGAAGCTTAGGGGA+AGG - chr1.3:34718821-34718840 MS.gene89735:CDS 50.0%
! CTCCTCCACCTTCAAGTTCA+AGG + chr1.3:34719773-34719792 None:intergenic 50.0%
! GTTGATGAGTATGGAGCCCA+AGG - chr1.3:34716799-34716818 MS.gene89735:CDS 50.0%
ACAGACATAACCTGCGGACC+AGG - chr1.3:34718690-34718709 MS.gene89735:intron 55.0%
CCCCCGCTGCAATTACATAG+AGG - chr1.3:34719845-34719864 MS.gene89735:CDS 55.0%
GAGTATGGAGCCCAAGGAGA+TGG - chr1.3:34716805-34716824 MS.gene89735:CDS 55.0%
GGCCTTGAACTTGAAGGTGG+AGG - chr1.3:34719768-34719787 MS.gene89735:CDS 55.0%
GTGGTGGCTGAAAGCTCACA+AGG + chr1.3:34719502-34719521 None:intergenic 55.0%
TCTCACTGTGACAGCACCAG+AGG - chr1.3:34718312-34718331 MS.gene89735:intron 55.0%
TGAAGGTGGAGGAGAGGCTA+AGG - chr1.3:34719779-34719798 MS.gene89735:CDS 55.0%
ATAACCTGCGGACCAGGCCA+TGG - chr1.3:34718696-34718715 MS.gene89735:intron 60.0%
GCCTTGCAAGGATGCCCCTA+CGG - chr1.3:34717870-34717889 MS.gene89735:intron 60.0%
!! ACCGTAGGGGCATCCTTGCA+AGG + chr1.3:34717874-34717893 None:intergenic 60.0%
CTTAGGGGAAGGGGGCTCCA+AGG - chr1.3:34718832-34718851 MS.gene89735:CDS 65.0%
GATACCATGGCCTGGTCCGC+AGG + chr1.3:34718703-34718722 None:intergenic 65.0%
GCGGACCAGGCCATGGTATC+AGG - chr1.3:34718703-34718722 MS.gene89735:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 34716574 34719914 34716574 ID=MS.gene89735
chr1.3 mRNA 34716574 34719914 34716574 ID=MS.gene89735.t1;Parent=MS.gene89735
chr1.3 exon 34719642 34719914 34719642 ID=MS.gene89735.t1.exon1;Parent=MS.gene89735.t1
chr1.3 CDS 34719642 34719914 34719642 ID=cds.MS.gene89735.t1;Parent=MS.gene89735.t1
chr1.3 exon 34718910 34719024 34718910 ID=MS.gene89735.t1.exon2;Parent=MS.gene89735.t1
chr1.3 CDS 34718910 34719024 34718910 ID=cds.MS.gene89735.t1;Parent=MS.gene89735.t1
chr1.3 exon 34718728 34718876 34718728 ID=MS.gene89735.t1.exon3;Parent=MS.gene89735.t1
chr1.3 CDS 34718728 34718876 34718728 ID=cds.MS.gene89735.t1;Parent=MS.gene89735.t1
chr1.3 exon 34718597 34718617 34718597 ID=MS.gene89735.t1.exon4;Parent=MS.gene89735.t1
chr1.3 CDS 34718597 34718617 34718597 ID=cds.MS.gene89735.t1;Parent=MS.gene89735.t1
chr1.3 exon 34718079 34718286 34718079 ID=MS.gene89735.t1.exon5;Parent=MS.gene89735.t1
chr1.3 CDS 34718079 34718286 34718079 ID=cds.MS.gene89735.t1;Parent=MS.gene89735.t1
chr1.3 exon 34717764 34717845 34717764 ID=MS.gene89735.t1.exon6;Parent=MS.gene89735.t1
chr1.3 CDS 34717764 34717845 34717764 ID=cds.MS.gene89735.t1;Parent=MS.gene89735.t1
chr1.3 exon 34717557 34717665 34717557 ID=MS.gene89735.t1.exon7;Parent=MS.gene89735.t1
chr1.3 CDS 34717557 34717665 34717557 ID=cds.MS.gene89735.t1;Parent=MS.gene89735.t1
chr1.3 exon 34717310 34717426 34717310 ID=MS.gene89735.t1.exon8;Parent=MS.gene89735.t1
chr1.3 CDS 34717310 34717426 34717310 ID=cds.MS.gene89735.t1;Parent=MS.gene89735.t1
chr1.3 exon 34716574 34716846 34716574 ID=MS.gene89735.t1.exon9;Parent=MS.gene89735.t1
chr1.3 CDS 34716574 34716846 34716574 ID=cds.MS.gene89735.t1;Parent=MS.gene89735.t1
Gene Sequence

>MS.gene89735

ATGGCCCTGCAAAGATATCTCTCATTCATTATGATCATGATTTATTTTGTTGCTTGTTATAGTACTAATTTGCAAGAGGACCCACTTAGTTCAATTGTTGAGAATTCACCTTATATAAATGATGGTGGAACATTCAAGGATTTTCTCATGCAAAGTACAGATCGTGTTTTGAGCTTAAAGAGCAAGTTGGGTGACACTTCTCCTTCATCGATTAAAACCTTTAATGTTGATGAGTATGGAGCCCAAGGAGATGGTAAAACTGATGACACACAGGTATATATATTTATTTTGACAAACTTGAATAAGGTCGATTTGGATAGAGAAATGAATTTTGTACAACCATTTTGTGACAACTCTTTATATATAAACTATTTTTATAATTTATTTCGATAAAGTAAAGTGAAACCATTTTCTTACAAGTTGTTTTTATAAGCTATTATGGAGAACTTGTAGAAATCTAAAAACCTTTTGTAGAAATGTAATAAGTTGTTTCCATAAATATCAAATTAATAAGTCAAACCAAACAAGTTCTAATGTTATACTAGTTGAAAATAATTGAATTTTGAATCTTATTTATACTAGTTGAAAATAATTGAATTTTGAAAAATAAAGAAAGAAAAACATGAAATTTGTCTTTAATTCTATCACTAAATGTTAGAGATGTTAAAATTGGAAACCATTTTTTTTTTTTTAATTTATCTCAAATATTCATCGATGATAAAAATAATTCTAGCGGTTGACTTTATTATTATTACCAAAAAATTTTAAAAAATAAAATTTTATTCTTTTGCTAATATGGTCTATATCAATATCGTGTTTGACAAATTATTTTTTTAAGCTTAATAAATAATTTAAAAAAAAATTACAATATTTTAATTTTACTCTTTCAGGCATTCAAGAAGGTTTGGCAAGTAGCATGTTCTTCTAAGGGATCAGTTGTTGTGGAGGCTCAAAAGAATTATCTTGTTAAGCCAATCACATTCTCTGGCCCTTGCAAATCAAAGAGTATCGCAGTTCAGATCTCTGGAAGCCTTGTAGCATCAGATAACCCATCTGATTACAAACAAGACCCCACACATTGGCTTATGTTTGATAGTGTTCAGAAACTATCTGTTAAAGGTGGTGGAACCATTGATGGAAATGGAAATATTTGGTGGCAGAACTCATGCAAAACGAACAAAAAACTCGTAAGATATAACAAGACAAATTTGTTATTATAATATACATCCATTTACTTAACATAAATTTTATTCAAGTGCTAATTTTTTTTTTTTTTTAATGTTTTTCTCTTTTGCAGCCTTGCAAGGATGCCCCTACGGTATGTATAGTATAACTCTCTTTCACCAATATATTAAATTTTTAAATTATAACGCATAAAGAGATTGTATTGTATATACACGGGTCGAGGTTCAAAGTAAAACTATTTTATACATATATTTAATTAAATCACTTTAACATATATACTCACTTTTAGATTATTTTTTAAGATAGCTCAATAAATACCTACTTTTTTTTTGACAAACAATAAATACCTACTTAGCATAAAGTAATTGGATGTATATGTAAAAAAAAATTACTCCAATGGTGCAAAATATTAATGTCAATTATATTATGGTTTGACTTTGTAGGCGTTAACTTTGTACAAGTGCAACAACTTGGTAGTTGAGGATTTGACTGTAAAAAATGGGCAACAAATTCATGTTCAATTCCAAAATTCTGCCAATGTTAGAGTTTCAGGTCTCACTGTGACAGCACCAGAGGACAGTCCAAACACTGATGGAATTCATGTCACCAACACTGAAAACATCCAAATCTCAAACTCTATTATAGGAACTGGTATTCTCGATTCATTTGATATATCTCATATATTACCACTTCTTTGAAAAATTTAAATTGACAACAAAAAAATTGAGATAAAAAAATAAGAAATTTATCTCTAATTAGTATTAGATACATTTTTTTTTTCATCACTATTTTTCTTATGTAATTCAATTTTTTAAGTAATATATATTTTAATTTAATTATTAAATATCAATTTTAGTTTCAAGTTTAAATATGTTTGTTTGCAGGGGATGATTGTATATCAATTGTAAATGGAACCAAGAATCTTAAAGCTACAGACATAACCTGCGGACCAGGCCATGGTATCAGGTAATAATTAATTAATTACCTTTAATAATATCTTCATCTTAGTAATTAAATATCGTTAAATTAAACTTCACACATGTTAATGATAATTCATTCTTCAGCATTGGAAGCTTAGGGGAAGGGGGCTCCAAGGAATTTGTTTCAGGAATAACCGTGAATGGAGCTAAATTATCTAGAACTACTAATGGAGTAAGAATTAAGACATGGCAGGTAATTAATATTAATTTCAAATTTTGAACTACTTCAATTTAGGCCTCATTTTTTTTTTTGTACACTTCAATTTTAGCTTTCTAACCCAATACACTTAATAATATCTATATACATATATATATGAATGCAGGGTGGGTCAGGAAGTGCAAGCAACATTAAATTTCAGAACATTCAAATGGAAAATGTAACTAACCCCATAATAATAGATCAGAACTACTGTGATCAACAGAGTCCATGCCAAAATCAGGTATTAAATTTTTTCTTTTATTTTGTCTATGAAATTGATCTATATTAGACATAATTTATAATCAAATATTATGGTATCATTAATTTGAACCATGTAATCGTTGTTAGTGTTGATATAAAATTTGGTTAATTAATTTTTTTTTTAAGAATCAAAAATGGAATATATTAATAACAACGATGAAGCTTCTTTAGCACAAGGTGTACTAAAGAAGTCACCCCAAAGAACAAGCAGTCACTGCATAATTACAAAAACATGTCAGTCGATACCCAAACAAAGTAACGGGTTCGACCACCATCTACTCGTGCCATAAACAAAATTGGCCTTGTGAGCTTTCAGCCACCACAAAGAATTATACTTAACCTTTTCTAAAATATCTATCATATTAAAATGAGTATTCTTGAATATTCTATTATTTCTTTCATTCCAAACTAATTTGGTTAATTAATTAATTTGGTAATTGCAGAAATCTGCGGTTCAGATAAGGAATGTGTTGTACCAAAACATAAAAGGAACAAGTGCTTCTGATGTAGCTATGCAATTTAATTGTAGCCAGAACTTTCCATGTCAAGGGATACTATTGCAGAACATAGGCCTTGAACTTGAAGGTGGAGGAGAGGCTAAGGCTTCATGCAACAATGTGAAATTGTCATACAAAGGAAATGTTAGCCCCCGCTGCAATTACATAGAGGAAATGCATGAACTTGGTGGCTTTGGAAAGAATCATAGTATGAATTAA
Protein sequence

>MS.gene89735.t1

MALQRYLSFIMIMIYFVACYSTNLQEDPLSSIVENSPYINDGGTFKDFLMQSTDRVLSLKSKLGDTSPSSIKTFNVDEYGAQGDGKTDDTQAFKKVWQVACSSKGSVVVEAQKNYLVKPITFSGPCKSKTSDNPSDYKQDPTHWLMFDSVQKLSVKGGGTIDGNGNIWWQNSCKTNKKLPCKDAPTALTLYKCNNLVVEDLTVKNGQQIHVQFQNSANVRVSGLTVTAPEDSPNTDGIHVTNTENIQISNSIIGTGDDCISIVNGTKNLKATDITCGPGHGISIGSLGEGGSKEFVSGITVNGAKLSRTTNGVRIKTWQGGSGSASNIKFQNIQMENVTNPIIIDQNYCDQQSPCQNQKSAVQIRNVLYQNIKGTSASDVAMQFNCSQNFPCQGILLQNIGLELEGGGEAKASCNNVKLSYKGNVSPRCNYIEEMHELGGFGKNHSMN