AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene018877

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018877.t1 MTR_1g052315 93.987 449 16 1 11 448 1 449 0.0 859
MS.gene018877.t1 MTR_7g091850 65.324 447 135 9 1 430 1 444 0.0 544
MS.gene018877.t1 MTR_7g091840 58.612 389 134 7 1 373 1 378 3.43e-151 435
MS.gene018877.t1 MTR_2g060350 50.448 446 187 7 8 429 6 441 1.98e-147 427
MS.gene018877.t1 MTR_3g030540 50.000 438 196 4 7 430 8 436 1.95e-135 397
MS.gene018877.t1 MTR_2g103410 49.591 367 172 3 74 427 59 425 4.04e-121 360
MS.gene018877.t1 MTR_8g065030 47.536 345 169 3 75 407 66 410 1.05e-110 334
MS.gene018877.t1 MTR_6g005630 46.064 343 166 7 73 403 44 379 1.43e-97 299
MS.gene018877.t1 MTR_1g086390 42.614 352 177 7 74 402 81 430 1.59e-89 280
MS.gene018877.t1 MTR_4g094715 41.237 388 204 8 69 434 60 445 1.68e-89 280
MS.gene018877.t1 MTR_2g435640 40.263 380 206 7 65 427 44 419 4.91e-88 275
MS.gene018877.t1 MTR_2g103650 41.449 345 184 5 73 400 27 370 7.47e-88 274
MS.gene018877.t1 MTR_7g113910 41.417 367 150 5 50 414 31 334 2.21e-87 271
MS.gene018877.t1 MTR_4g083660 42.933 375 196 8 67 428 2 371 1.78e-85 266
MS.gene018877.t1 MTR_7g110050 41.429 350 183 6 74 402 67 415 4.28e-85 268
MS.gene018877.t1 MTR_5g033680 39.005 382 212 7 65 427 50 429 2.52e-84 266
MS.gene018877.t1 MTR_4g084050 39.200 375 182 7 74 418 23 381 4.91e-84 263
MS.gene018877.t1 MTR_2g049400 40.731 383 209 9 57 428 13 388 2.09e-83 262
MS.gene018877.t1 MTR_6g005630 43.149 343 153 9 73 403 44 356 3.94e-83 261
MS.gene018877.t1 MTR_5g034090 39.024 369 183 7 74 403 121 486 1.44e-81 261
MS.gene018877.t1 MTR_8g065010 38.275 371 186 7 73 403 106 473 9.51e-81 259
MS.gene018877.t1 MTR_6g028080 39.071 366 191 7 73 417 29 383 1.48e-80 254
MS.gene018877.t1 MTR_3g084360 37.433 374 209 6 62 418 12 377 3.11e-79 251
MS.gene018877.t1 MTR_2g103410 48.263 259 121 3 74 319 59 317 7.23e-79 248
MS.gene018877.t1 MTR_3g438050 42.105 342 184 5 73 402 26 365 8.15e-79 250
MS.gene018877.t1 MTR_8g030930 40.650 369 195 7 72 423 25 386 2.91e-78 249
MS.gene018877.t1 MTR_3g054320 38.889 360 191 6 74 416 30 377 4.88e-78 248
MS.gene018877.t1 MTR_3g084380 38.992 377 203 6 56 414 3 370 3.10e-77 246
MS.gene018877.t1 MTR_8g009810 41.463 369 198 8 72 427 33 396 1.17e-76 244
MS.gene018877.t1 MTR_4g120320 38.133 375 207 10 72 427 50 418 1.57e-76 245
MS.gene018877.t1 MTR_2g032710 41.341 358 184 9 67 402 61 414 1.78e-76 246
MS.gene018877.t1 MTR_5g043350 37.731 379 212 7 56 417 11 382 2.44e-76 244
MS.gene018877.t1 MTR_1g012390 38.108 370 208 7 73 427 27 390 5.69e-76 243
MS.gene018877.t1 MTR_0157s0060 39.888 356 185 4 78 416 2 345 8.56e-75 239
MS.gene018877.t1 MTR_4g034020 39.888 356 185 4 78 416 2 345 8.56e-75 239
MS.gene018877.t1 MTR_1g088160 35.121 373 218 8 74 427 35 402 1.62e-74 239
MS.gene018877.t1 MTR_8g010070 36.458 384 210 10 57 425 18 382 1.45e-69 226
MS.gene018877.t1 MTR_8g010040 37.127 369 204 8 73 428 31 384 1.52e-69 226
MS.gene018877.t1 MTR_8g010080 37.288 354 198 5 74 416 31 371 5.24e-69 224
MS.gene018877.t1 MTR_2g029170 38.209 335 190 8 106 428 29 358 4.70e-67 218
MS.gene018877.t1 MTR_7g035415 39.016 305 162 6 74 364 40 334 2.01e-66 216
MS.gene018877.t1 MTR_2g058640 35.904 376 212 9 74 429 25 391 2.17e-66 218
MS.gene018877.t1 MTR_8g008765 33.081 396 199 6 3 386 1 342 1.58e-65 214
MS.gene018877.t1 MTR_8g010110 37.640 356 195 9 74 416 31 372 1.79e-65 215
MS.gene018877.t1 MTR_8g010090 36.798 356 198 9 74 416 31 372 1.95e-65 215
MS.gene018877.t1 MTR_2g058840 34.197 386 225 9 63 429 14 389 3.13e-65 215
MS.gene018877.t1 MTR_1g013740 33.423 371 212 9 73 428 34 384 1.54e-63 210
MS.gene018877.t1 MTR_2g058670 33.842 393 219 9 63 429 14 391 1.85e-63 211
MS.gene018877.t1 MTR_1g013730 33.962 371 210 9 73 428 26 376 6.46e-62 206
MS.gene018877.t1 MTR_8g077320 39.310 290 141 6 74 348 33 302 1.91e-59 199
MS.gene018877.t1 MTR_5g097860 34.006 347 206 9 47 378 2 340 2.85e-59 197
MS.gene018877.t1 MTR_5g034090 38.246 285 136 5 74 319 121 404 7.21e-59 199
MS.gene018877.t1 MTR_5g063430 37.124 299 164 7 72 355 23 312 2.09e-55 187
MS.gene018877.t1 MTR_8g010050 34.218 339 160 9 74 398 31 320 8.41e-54 184
MS.gene018877.t1 MTR_8g008700 38.057 247 138 3 142 386 32 265 4.35e-49 169
MS.gene018877.t1 MTR_8g031180 39.791 191 110 1 205 390 73 263 3.55e-41 148
MS.gene018877.t1 MTR_2g100040 31.595 326 160 9 90 400 39 316 2.07e-40 148
MS.gene018877.t1 MTR_4g124980 24.057 424 260 14 73 448 73 482 5.31e-24 104
MS.gene018877.t1 MTR_2g042740 23.077 416 265 13 73 443 55 460 4.09e-22 99.0
MS.gene018877.t1 MTR_7g078680 24.249 433 264 13 54 434 29 449 1.09e-21 97.8
MS.gene018877.t1 MTR_7g088550 28.077 260 165 8 159 404 163 414 2.49e-21 96.7
MS.gene018877.t1 MTR_8g028725 24.638 414 242 14 73 434 54 449 2.99e-21 96.3
MS.gene018877.t1 MTR_3g096330 29.130 230 137 5 159 372 189 408 1.25e-20 95.5
MS.gene018877.t1 MTR_8g098840 24.259 371 232 10 75 404 45 407 7.61e-20 92.0
MS.gene018877.t1 MTR_4g120730 23.544 395 237 13 72 417 38 416 1.44e-19 91.3
MS.gene018877.t1 MTR_3g449590 23.500 400 249 12 73 427 46 433 1.91e-19 90.9
MS.gene018877.t1 MTR_1g100050 24.091 440 260 16 56 434 18 444 3.80e-19 90.1
MS.gene018877.t1 MTR_5g090160 22.739 387 248 10 68 411 36 414 4.75e-19 89.7
MS.gene018877.t1 MTR_2g435340 22.410 415 268 12 55 428 22 423 8.16e-19 89.0
MS.gene018877.t1 MTR_2g435340 22.523 333 212 8 133 428 35 358 2.24e-18 87.0
MS.gene018877.t1 MTR_1g100060 25.086 291 194 9 159 434 206 487 2.76e-18 87.4
MS.gene018877.t1 MTR_1g100040 25.086 291 194 9 159 434 169 450 4.75e-18 86.7
MS.gene018877.t1 MTR_1g099850 23.636 440 262 14 56 434 23 449 5.51e-18 86.7
MS.gene018877.t1 MTR_7g110710 28.179 291 182 11 159 434 156 434 1.67e-16 82.0
MS.gene018877.t1 MTR_7g110710 28.179 291 182 11 159 434 156 434 2.00e-16 81.6
MS.gene018877.t1 MTR_1g086030 28.626 262 151 7 159 391 91 345 2.40e-15 78.2
MS.gene018877.t1 MTR_1g086030 28.626 262 151 7 159 391 195 449 2.93e-15 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018877.t1 AT3G57510 53.515 441 173 11 5 429 6 430 1.94e-152 440
MS.gene018877.t1 AT3G07970 56.104 385 153 5 59 429 56 438 6.87e-150 434
MS.gene018877.t1 AT2G41850 56.533 398 151 8 47 430 42 431 5.57e-144 418
MS.gene018877.t1 AT1G70500 48.370 368 177 4 75 430 68 434 7.16e-119 355
MS.gene018877.t1 AT1G80170 47.606 376 183 4 66 427 45 420 1.19e-118 354
MS.gene018877.t1 AT1G23460 44.909 383 197 5 75 445 44 424 2.70e-110 332
MS.gene018877.t1 AT1G23460 44.909 383 197 5 75 445 68 448 4.23e-110 333
MS.gene018877.t1 AT1G56710 43.799 379 187 8 73 427 47 423 3.16e-95 294
MS.gene018877.t1 AT5G14650 44.957 347 174 7 73 407 50 391 4.21e-95 293
MS.gene018877.t1 AT2G43890 40.104 384 214 8 56 428 11 389 5.75e-90 279
MS.gene018877.t1 AT2G43880 40.483 373 206 8 67 428 24 391 7.35e-89 276
MS.gene018877.t1 AT1G02460 42.541 362 179 9 74 409 89 447 8.27e-89 279
MS.gene018877.t1 AT4G01890 40.730 356 183 9 73 402 64 417 1.20e-85 270
MS.gene018877.t1 AT3G26610 42.735 351 182 7 73 407 66 413 3.10e-85 269
MS.gene018877.t1 AT3G15720 39.510 367 196 5 69 418 19 376 5.57e-85 268
MS.gene018877.t1 AT3G15720 39.510 367 196 5 69 418 18 375 6.30e-85 268
MS.gene018877.t1 AT1G48100 40.169 356 190 7 73 407 79 432 1.58e-84 267
MS.gene018877.t1 AT4G18180 38.776 392 207 9 69 430 34 422 2.91e-84 265
MS.gene018877.t1 AT4G35670 39.889 361 194 6 72 417 22 374 4.15e-84 264
MS.gene018877.t1 AT2G43860 41.287 373 198 10 57 416 19 383 8.53e-84 263
MS.gene018877.t1 AT1G10640 41.622 370 176 8 72 403 117 484 1.07e-83 267
MS.gene018877.t1 AT1G05660 39.840 374 210 7 65 427 19 388 3.30e-83 261
MS.gene018877.t1 AT1G60590 39.353 371 182 7 74 403 123 491 7.76e-83 265
MS.gene018877.t1 AT1G43080 40.053 377 201 9 72 428 29 400 1.14e-82 260
MS.gene018877.t1 AT5G17200 39.747 395 190 8 58 417 26 407 3.61e-82 259
MS.gene018877.t1 AT2G15460 39.523 377 203 9 72 428 29 400 8.08e-82 258
MS.gene018877.t1 AT1G43090 40.323 372 197 9 72 423 29 395 8.10e-82 259
MS.gene018877.t1 AT3G15720 38.965 367 195 6 69 418 18 372 1.07e-81 259
MS.gene018877.t1 AT1G05650 39.305 374 212 7 65 427 19 388 1.51e-81 257
MS.gene018877.t1 AT5G44840 36.639 363 204 5 72 417 22 375 1.79e-81 257
MS.gene018877.t1 AT3G59850 42.733 344 180 8 72 402 21 360 1.01e-80 255
MS.gene018877.t1 AT3G59850 42.733 344 180 8 72 402 65 404 1.38e-80 256
MS.gene018877.t1 AT2G43870 40.426 376 205 10 67 429 14 383 1.47e-80 254
MS.gene018877.t1 AT1G80170 46.816 267 129 3 66 319 45 311 1.77e-80 252
MS.gene018877.t1 AT1G43100 40.054 372 198 9 72 423 29 395 2.41e-80 256
MS.gene018877.t1 AT2G15450 39.096 376 204 9 72 427 29 399 6.96e-80 253
MS.gene018877.t1 AT2G15470 38.992 377 205 9 72 428 29 400 1.59e-79 252
MS.gene018877.t1 AT2G40310 39.523 377 203 10 72 428 29 400 1.89e-79 252
MS.gene018877.t1 AT5G27530 37.569 362 195 4 72 418 51 396 4.13e-79 253
MS.gene018877.t1 AT2G33160 40.633 379 201 9 68 427 26 399 5.57e-79 258
MS.gene018877.t1 AT1G02790 37.731 379 205 10 73 429 51 420 6.79e-79 251
MS.gene018877.t1 AT1G78400 39.946 373 201 10 72 427 33 399 1.91e-78 249
MS.gene018877.t1 AT1G65570 39.295 369 205 10 73 427 30 393 2.22e-78 249
MS.gene018877.t1 AT4G13760 38.462 377 207 9 72 428 29 400 5.00e-78 248
MS.gene018877.t1 AT1G17150 38.000 400 226 10 47 429 6 400 8.98e-77 245
MS.gene018877.t1 AT2G26620 39.200 375 205 9 72 428 29 398 1.80e-76 244
MS.gene018877.t1 AT2G43880 41.254 303 163 7 67 358 24 322 3.79e-74 236
MS.gene018877.t1 AT3G07820 37.288 354 208 6 87 428 33 384 1.52e-73 236
MS.gene018877.t1 AT3G15720 38.871 319 171 4 115 418 3 312 1.55e-71 231
MS.gene018877.t1 AT1G80140 38.348 339 185 6 105 427 2 332 1.14e-70 227
MS.gene018877.t1 AT3G07840 35.792 366 221 7 75 428 22 385 3.27e-70 228
MS.gene018877.t1 AT3G07830 35.933 359 211 8 87 430 34 388 9.28e-70 227
MS.gene018877.t1 AT3G14040 37.500 368 214 8 73 427 70 434 8.79e-69 226
MS.gene018877.t1 AT5G48140 35.393 356 211 7 87 428 34 384 8.30e-68 221
MS.gene018877.t1 AT4G32380 35.843 332 189 6 88 402 41 365 2.05e-67 222
MS.gene018877.t1 AT3G07850 36.292 383 226 9 58 427 56 433 4.11e-67 221
MS.gene018877.t1 AT4G35670 41.241 274 153 2 144 417 2 267 4.19e-67 216
MS.gene018877.t1 AT5G14650 43.243 259 132 5 73 319 50 305 2.92e-66 215
MS.gene018877.t1 AT5G44830 35.241 332 183 4 101 417 2 316 1.54e-65 214
MS.gene018877.t1 AT5G39910 36.545 301 154 6 74 357 36 316 5.51e-58 195
MS.gene018877.t1 AT4G32375 35.034 294 181 4 144 434 13 299 4.56e-56 191
MS.gene018877.t1 AT4G32370 33.030 330 178 7 55 364 32 338 1.85e-53 182
MS.gene018877.t1 AT4G32380 35.439 285 160 7 88 357 41 316 6.66e-52 180
MS.gene018877.t1 AT3G42950 24.205 409 259 12 73 438 65 465 8.93e-24 103
MS.gene018877.t1 AT1G19170 21.957 419 267 12 73 443 86 492 2.91e-21 96.7
MS.gene018877.t1 AT3G62110 28.428 299 187 10 159 439 156 445 5.72e-21 95.5
MS.gene018877.t1 AT3G62110 28.428 299 187 10 159 439 156 445 5.72e-21 95.5
MS.gene018877.t1 AT4G33440 26.667 285 180 8 159 427 185 456 1.00e-19 91.7
MS.gene018877.t1 AT4G23820 23.873 377 225 11 74 403 41 402 2.77e-19 90.1
MS.gene018877.t1 AT5G41870 25.070 355 212 8 72 382 43 387 7.54e-19 89.0
MS.gene018877.t1 AT5G49215 24.543 383 229 11 68 405 40 407 4.87e-18 86.7
MS.gene018877.t1 AT5G49215 24.543 383 229 11 68 405 38 405 4.95e-18 86.7
MS.gene018877.t1 AT4G23500 24.566 403 252 16 75 434 69 462 1.18e-17 85.5
MS.gene018877.t1 AT3G48950 24.510 408 245 17 76 434 47 440 2.34e-17 84.7
MS.gene018877.t1 AT3G61490 26.255 259 170 5 159 404 173 423 2.47e-17 84.7
MS.gene018877.t1 AT3G61490 26.255 259 170 5 159 404 158 408 2.56e-17 84.3
MS.gene018877.t1 AT3G61490 26.255 259 170 5 159 404 158 408 2.56e-17 84.3
MS.gene018877.t1 AT3G61490 26.255 259 170 5 159 404 158 408 2.56e-17 84.3
MS.gene018877.t1 AT3G61490 25.912 274 181 6 159 418 271 536 4.58e-17 84.0
MS.gene018877.t1 AT2G23900 23.810 378 228 12 76 406 58 422 7.40e-17 83.2
MS.gene018877.t1 AT3G06770 22.368 380 235 12 66 400 38 402 1.62e-15 79.0
MS.gene018877.t1 AT3G06770 22.368 380 235 12 66 400 39 403 1.95e-15 78.6
MS.gene018877.t1 AT3G06770 22.772 303 181 8 139 400 43 333 1.87e-13 72.0
MS.gene018877.t1 AT3G06770 22.772 303 181 8 139 400 43 333 1.87e-13 72.0
MS.gene018877.t1 AT3G06770 22.368 304 183 8 138 400 24 315 2.86e-13 71.2

Find 104 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTAACATTGGCAGAATTT+TGG 0.120610 1.2:+36718616 None:intergenic
TCTGCCAATGTTAGAGTTTC+GGG 0.172248 1.2:-36718609 MS.gene018877:CDS
GTCTGTAGCTTTAAGATTCT+TGG 0.197453 1.2:+36718228 None:intergenic
TCCATACTCATCAACATTAA+AGG 0.219267 1.2:+36720284 None:intergenic
GGCTCCAAGGAATTTGTTTC+AGG 0.236001 1.2:-36718056 MS.gene018877:CDS
CAAATCTCAAACTCTATTAT+AGG 0.237072 1.2:-36718516 MS.gene018877:CDS
TTCTGCCAATGTTAGAGTTT+CGG 0.257034 1.2:-36718610 MS.gene018877:CDS
ACCTTTAATGTTGATGAGTA+TGG 0.261303 1.2:-36720285 MS.gene018877:CDS
GCAAGTAGCATGTTCTTCTA+AGG 0.264701 1.2:-36719367 MS.gene018877:CDS
GATTGTATATCAATTGTAAA+TGG 0.295701 1.2:-36718253 MS.gene018877:CDS
GTTCCACCATCATTTATATA+AGG 0.305190 1.2:+36720393 None:intergenic
GCGGACCAGGCCATGGTATC+AGG 0.313392 1.2:-36718198 MS.gene018877:intron
GTTCAGAAACTATCTGTTAA+AGG 0.325425 1.2:-36719177 MS.gene018877:CDS
GTGTTGTACCAAAACATAAA+AGG 0.327486 1.2:-36717235 MS.gene018877:CDS
CTCCTCCACCTTCAAGTTCA+AGG 0.349095 1.2:+36717131 None:intergenic
TTGATGGAAATGGAAATATT+TGG 0.351336 1.2:-36719143 MS.gene018877:CDS
ATGCATGAACATGGTGGCTT+TGG 0.363615 1.2:-36717031 MS.gene018877:CDS
TTCTTCAGCATTGGAAGCTT+AGG 0.370444 1.2:-36718086 MS.gene018877:intron
TTCAGGCATTCAAGAAGGTT+TGG 0.372209 1.2:-36719389 MS.gene018877:intron
AATATTTCCATTTCCATCAA+TGG 0.376826 1.2:+36719146 None:intergenic
CAAGGGCCAGAGAATGTGAT+TGG 0.378062 1.2:+36719303 None:intergenic
CTATAATAGAGTTTGAGATT+TGG 0.389461 1.2:+36718517 None:intergenic
TATTCCTGAAACAAATTCCT+TGG 0.399944 1.2:+36718052 None:intergenic
TCTTCAGCATTGGAAGCTTA+GGG 0.402452 1.2:-36718085 MS.gene018877:intron
TCAAACTCTATTATAGGAAC+TGG 0.409611 1.2:-36718510 MS.gene018877:intron
ATATGAATGCAGGGTGGGTC+AGG 0.415176 1.2:-36717851 MS.gene018877:intron
ACATGAATTCCATCAGTGTT+TGG 0.417169 1.2:+36718558 None:intergenic
TCCCTTGACATGGAAAGTTC+TGG 0.419206 1.2:+36717173 None:intergenic
TTCCTCTATGTAATTGCAGC+GGG 0.427217 1.2:+36717054 None:intergenic
TAAATTTCAGAACATTCAAA+TGG 0.430371 1.2:-36717813 MS.gene018877:CDS
ACAGAGTCCATGCCAAAATC+AGG 0.431144 1.2:-36717744 MS.gene018877:intron
TTGAGCTTAAAGAGCAAGTT+GGG 0.436288 1.2:-36720333 MS.gene018877:CDS
GTTTCAGGAATAACCGTGAA+TGG 0.437865 1.2:-36718041 MS.gene018877:CDS
GTTAAGCCAATCACATTCTC+TGG 0.439218 1.2:-36719309 MS.gene018877:CDS
TAATGAATGAGAGATATCTT+TGG 0.440275 1.2:+36720493 None:intergenic
GCCTTGCAAGGCTGCCCCTA+CGG 0.442216 1.2:-36718977 MS.gene018877:intron
TCAGTGTTTGGACTGTCCTC+TGG 0.447845 1.2:+36718570 None:intergenic
GGGTCTTGTTTGTAATCAGA+TGG 0.451683 1.2:+36719225 None:intergenic
GATACCATGGCCTGGTCCGC+AGG 0.454864 1.2:+36718201 None:intergenic
CATTGGAAGCTTAGGGGAAG+GGG 0.456092 1.2:-36718078 MS.gene018877:CDS
AAATTATCTAGAACTACTAA+TGG 0.458878 1.2:-36718014 MS.gene018877:CDS
AAAGGTGGTGGAACCATTGA+TGG 0.472710 1.2:-36719159 MS.gene018877:CDS
GCATTGGAAGCTTAGGGGAA+GGG 0.477753 1.2:-36718079 MS.gene018877:CDS
AGATAATTTAGCTCCATTCA+CGG 0.478739 1.2:+36718028 None:intergenic
AAACTATCTGTTAAAGGTGG+TGG 0.483003 1.2:-36719171 MS.gene018877:CDS
TTCTAAGGGATCAGTTGTTG+TGG 0.483133 1.2:-36719352 MS.gene018877:CDS
TTAATTATTACCTGATACCA+TGG 0.483681 1.2:+36718188 None:intergenic
ATGATACTCTTTGATTTGCA+AGG 0.486228 1.2:+36719285 None:intergenic
AAATGATGGTGGAACATTCA+AGG 0.487514 1.2:-36720385 MS.gene018877:CDS
GGTGGAACCATTGATGGAAA+TGG 0.493031 1.2:-36719153 MS.gene018877:CDS
AACATAGGCCTTGAACTTGA+AGG 0.502751 1.2:-36717139 MS.gene018877:CDS
TTCTCAACAATTGAACTAAG+TGG 0.507272 1.2:+36720420 None:intergenic
AGCCAGAACTTTCCATGTCA+AGG 0.511075 1.2:-36717175 MS.gene018877:CDS
ACTCTTTCAGGCATTCAAGA+AGG 0.520557 1.2:-36719394 MS.gene018877:intron
AATTCACCTTATATAAATGA+TGG 0.521530 1.2:-36720399 MS.gene018877:CDS
GGTCTTGTTTGTAATCAGAT+GGG 0.528261 1.2:+36719226 None:intergenic
AGAAATCTGCGGTTCAGATA+AGG 0.532659 1.2:-36717261 MS.gene018877:CDS
ACCGTAGGGGCAGCCTTGCA+AGG 0.533011 1.2:+36718976 None:intergenic
ACAGACATAACCTGCGGACC+AGG 0.533274 1.2:-36718211 MS.gene018877:CDS
TGAAGGTGGAGGAGAGGCTA+AGG 0.539282 1.2:-36717122 MS.gene018877:CDS
TGATACTCTTTGATTTGCAA+GGG 0.540279 1.2:+36719286 None:intergenic
CAAGTAGCATGTTCTTCTAA+GGG 0.541141 1.2:-36719366 MS.gene018877:CDS
TTTGTACAAGTGCAACAACT+TGG 0.542026 1.2:-36718688 MS.gene018877:CDS
TTTGAGCTTAAAGAGCAAGT+TGG 0.542591 1.2:-36720334 MS.gene018877:CDS
GTGCAACAACTTGGTAGTTG+AGG 0.556209 1.2:-36718679 MS.gene018877:CDS
GAGACCCGAAACTCTAACAT+TGG 0.556770 1.2:+36718605 None:intergenic
TAAGGGATCAGTTGTTGTGG+AGG 0.563380 1.2:-36719349 MS.gene018877:CDS
GGCCTTGAACTTGAAGGTGG+AGG 0.563529 1.2:-36717133 MS.gene018877:CDS
GAGTATGGAGCCCAAGGAGA+TGG 0.566321 1.2:-36720270 MS.gene018877:CDS
AGCATTGGAAGCTTAGGGGA+AGG 0.569506 1.2:-36718080 MS.gene018877:CDS
TTATAGTACTAATTTGCAAG+AGG 0.571317 1.2:-36720445 MS.gene018877:CDS
ATGGAAATGGAAATATTTGG+TGG 0.572083 1.2:-36719140 MS.gene018877:CDS
ATCAAACATAAGCCAATGTG+TGG 0.580117 1.2:+36719203 None:intergenic
TATTACCTGATACCATGGCC+TGG 0.582738 1.2:+36718193 None:intergenic
TCTCAACAATTGAACTAAGT+GGG 0.583139 1.2:+36720421 None:intergenic
GCCAGAACTTTCCATGTCAA+GGG 0.588404 1.2:-36717174 MS.gene018877:CDS
CTTCAGCATTGGAAGCTTAG+GGG 0.590202 1.2:-36718084 MS.gene018877:intron
ATAACCTGCGGACCAGGCCA+TGG 0.595581 1.2:-36718205 MS.gene018877:CDS
TTTCCTCTATGTAATTGCAG+CGG 0.596917 1.2:+36717053 None:intergenic
TGCAATAGTATCCCTTGACA+TGG 0.597330 1.2:+36717163 None:intergenic
GTTGATGAGTATGGAGCCCA+AGG 0.600408 1.2:-36720276 MS.gene018877:CDS
TCACCTTATATAAATGATGG+TGG 0.605269 1.2:-36720396 MS.gene018877:CDS
AGTAAGAATTAAGACATGGC+AGG 0.605746 1.2:-36717991 MS.gene018877:intron
TTGGTAATTGCAGAAATCTG+CGG 0.605924 1.2:-36717272 MS.gene018877:intron
AATGTGAAATTGTCATACAA+AGG 0.609811 1.2:-36717088 MS.gene018877:CDS
TCCTCTATGTAATTGCAGCG+GGG 0.612427 1.2:+36717055 None:intergenic
CCTCTATGTAATTGCAGCGG+GGG 0.614683 1.2:+36717056 None:intergenic
GAGGACAGTCCAAACACTGA+TGG 0.616282 1.2:-36718567 MS.gene018877:CDS
ATTGGAAGCTTAGGGGAAGG+GGG 0.617129 1.2:-36718077 MS.gene018877:CDS
GGGATACTATTGCAGAACAT+AGG 0.621368 1.2:-36717154 MS.gene018877:CDS
TGAACTTGAAGGTGGAGGAG+AGG 0.630050 1.2:-36717128 MS.gene018877:CDS
CAGAAACTATCTGTTAAAGG+TGG 0.634288 1.2:-36719174 MS.gene018877:CDS
GAATGAGAGATATCTTTGGA+TGG 0.635183 1.2:+36720497 None:intergenic
TCAAACATAAGCCAATGTGT+GGG 0.646752 1.2:+36719204 None:intergenic
ACAAACAAGACCCCACACAT+TGG 0.647737 1.2:-36719215 MS.gene018877:CDS
ATAGGCCTTGAACTTGAAGG+TGG 0.654657 1.2:-36717136 MS.gene018877:CDS
TCTCACTGTGACAGCACCAG+AGG 0.656991 1.2:-36718586 MS.gene018877:CDS
ATAGAGGAAATGCATGAACA+TGG 0.657522 1.2:-36717040 MS.gene018877:CDS
CAAACATAAGCCAATGTGTG+GGG 0.674734 1.2:+36719205 None:intergenic
TGGTAAAACTGATGACACAC+AGG 0.675901 1.2:-36720250 MS.gene018877:intron
ATGGAGTAAGAATTAAGACA+TGG 0.710644 1.2:-36717995 MS.gene018877:CDS
GAGGAAATGCATGAACATGG+TGG 0.718591 1.2:-36717037 MS.gene018877:CDS
TTATATTATACATACCGTAG+GGG 0.735431 1.2:+36718963 None:intergenic
AAAGCTACAGACATAACCTG+CGG 0.746432 1.2:-36718217 MS.gene018877:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGGTTAATTAATTAATT+TGG - chr1.2:36720219-36720238 MS.gene018877:intron 10.0%
!! TATTAATGTCAATTATATTA+TGG - chr1.2:36718778-36718797 MS.gene018877:intron 10.0%
!!! TTTTTTTTAAGAATCAAAAA+TGG - chr1.2:36719923-36719942 MS.gene018877:intron 10.0%
!! ATTAATTAACCAAATTAGTT+TGG + chr1.2:36720214-36720233 None:intergenic 15.0%
!! GATAATAAAAATAATTCTAG+CGG - chr1.2:36717912-36717931 MS.gene018877:intron 15.0%
!! TAAGATGAAGATATTATTAA+AGG + chr1.2:36719355-36719374 None:intergenic 15.0%
!! TAAGATTTATGTTAAGTAAA+TGG + chr1.2:36718466-36718485 None:intergenic 15.0%
!!! AAAATTTTAATACCTGATTT+TGG + chr1.2:36719781-36719800 None:intergenic 15.0%
!!! ATTTAAATTTTTCTAAGAAG+TGG + chr1.2:36719060-36719079 None:intergenic 15.0%
!!! ATTTTATTCTTTTGCTAATA+TGG - chr1.2:36717975-36717994 MS.gene018877:intron 15.0%
!!! ATTTTGCTTATATTTTGAAA+CGG - chr1.2:36717606-36717625 MS.gene018877:intron 15.0%
!!! TAGTTTTGATCTATTATTAT+GGG + chr1.2:36719737-36719756 None:intergenic 15.0%
!!! TATGATAGATATTTTAGAAA+AGG + chr1.2:36720150-36720169 None:intergenic 15.0%
!! AAAAAAAAAAATTACACCGA+TGG - chr1.2:36718748-36718767 MS.gene018877:intron 20.0%
!! AAAAACAACTTGTAAGAAAA+TGG + chr1.2:36717414-36717433 None:intergenic 20.0%
!! AATTACTTGTCATATTGTTT+GGG + chr1.2:36717658-36717677 None:intergenic 20.0%
!! AATTCACCTTATATAAATGA+TGG - chr1.2:36717111-36717130 MS.gene018877:CDS 20.0%
!! AGTGTACAAAAAAAAAAATG+AGG + chr1.2:36719587-36719606 None:intergenic 20.0%
!! ATACATATATATATGAATGC+AGG - chr1.2:36719649-36719668 MS.gene018877:intron 20.0%
!! ATAGATATTATCAAGTGTAT+TGG + chr1.2:36719629-36719648 None:intergenic 20.0%
!! CATTCATTTAATGATGTATA+TGG + chr1.2:36717572-36717591 None:intergenic 20.0%
!! GATTGTATATCAATTGTAAA+TGG - chr1.2:36719257-36719276 MS.gene018877:intron 20.0%
!! TAAATTTCAGAACATTCAAA+TGG - chr1.2:36719697-36719716 MS.gene018877:intron 20.0%
!! TAATTACTTGTCATATTGTT+TGG + chr1.2:36717659-36717678 None:intergenic 20.0%
!! TACATATATATATGAATGCA+GGG - chr1.2:36719650-36719669 MS.gene018877:intron 20.0%
!! TAGATATTATCAAGTGTATT+GGG + chr1.2:36719628-36719647 None:intergenic 20.0%
!! TATTCATTTAATGATGTATG+TGG - chr1.2:36717533-36717552 MS.gene018877:intron 20.0%
!! TTTAAATATGTTTGTTTGCA+GGG - chr1.2:36719231-36719250 MS.gene018877:CDS 20.0%
!!! AAATTATCTAGAACTACTAA+TGG - chr1.2:36719496-36719515 MS.gene018877:intron 20.0%
!!! AGTTTTGATCTATTATTATG+GGG + chr1.2:36719736-36719755 None:intergenic 20.0%
!!! ATTTTGAACTACTTCAATTT+AGG - chr1.2:36719561-36719580 MS.gene018877:intron 20.0%
!!! GTAGTTTTGATCTATTATTA+TGG + chr1.2:36719738-36719757 None:intergenic 20.0%
!!! GTTAGTGTTGATATAAAATT+TGG - chr1.2:36719890-36719909 MS.gene018877:intron 20.0%
!!! GTTGTTTTTATAAGCTATTA+TGG - chr1.2:36717425-36717444 MS.gene018877:intron 20.0%
!!! TAATAACATTAGAACTTGTT+TGG + chr1.2:36717718-36717737 None:intergenic 20.0%
!!! TATAGTTTTACTTTGAACTT+CGG + chr1.2:36718687-36718706 None:intergenic 20.0%
!!! TATTTTAATTCTACTCTTTC+AGG - chr1.2:36718104-36718123 MS.gene018877:intron 20.0%
!!! TATTTTGACAAACTTGAATA+AGG - chr1.2:36717293-36717312 MS.gene018877:intron 20.0%
!!! TTTTACAGATACATCTAAAA+GGG + chr1.2:36718731-36718750 None:intergenic 20.0%
!!! TTTTTACAGATACATCTAAA+AGG + chr1.2:36718732-36718751 None:intergenic 20.0%
! AATATTTCCATTTCCATCAA+TGG + chr1.2:36718367-36718386 None:intergenic 25.0%
! AATGTGAAATTGTCATACAA+AGG - chr1.2:36720422-36720441 MS.gene018877:CDS 25.0%
! AGGATTTGACTGTAAAAAAT+GGG - chr1.2:36718851-36718870 MS.gene018877:intron 25.0%
! AGGTTAAGTATAATTCTTTG+TGG + chr1.2:36720130-36720149 None:intergenic 25.0%
! AGTTATATTATACATACCGT+AGG + chr1.2:36718552-36718571 None:intergenic 25.0%
! ATTCTATCACTAAATGTTAG+AGG - chr1.2:36717839-36717858 MS.gene018877:CDS 25.0%
! CAAATCTCAAACTCTATTAT+AGG - chr1.2:36718994-36719013 MS.gene018877:intron 25.0%
! CATATTGTTTGGGAAATTTA+TGG + chr1.2:36717648-36717667 None:intergenic 25.0%
! GAGTATTACATTTCTACAAA+CGG + chr1.2:36717473-36717492 None:intergenic 25.0%
! GTTATATTATACATACCGTA+GGG + chr1.2:36718551-36718570 None:intergenic 25.0%
! GTTTAAATATGTTTGTTTGC+AGG - chr1.2:36719230-36719249 MS.gene018877:CDS 25.0%
! TAATGAATGAGAGATATCTT+TGG + chr1.2:36717020-36717039 None:intergenic 25.0%
! TATATAGAGTTGTCGAAAAA+TGG + chr1.2:36717350-36717369 None:intergenic 25.0%
! TCTTTCATTCCAAACTAATT+TGG - chr1.2:36720202-36720221 MS.gene018877:intron 25.0%
! TTAAATATGTTTGTTTGCAG+GGG - chr1.2:36719232-36719251 MS.gene018877:CDS 25.0%
! TTAAGTATAATTCTTTGTGG+TGG + chr1.2:36720127-36720146 None:intergenic 25.0%
! TTAATTATTACCTGATACCA+TGG + chr1.2:36719325-36719344 None:intergenic 25.0%
! TTATATTATACATACCGTAG+GGG + chr1.2:36718550-36718569 None:intergenic 25.0%
! TTGATGGAAATGGAAATATT+TGG - chr1.2:36718367-36718386 MS.gene018877:intron 25.0%
! TTTATGTATCAAGTGAGTTA+AGG + chr1.2:36718640-36718659 None:intergenic 25.0%
!! ACATTAATATTTTGCACCAT+CGG + chr1.2:36718767-36718786 None:intergenic 25.0%
!! ATATTATGGTTTGACTTTGT+AGG - chr1.2:36718792-36718811 MS.gene018877:intron 25.0%
!! CTATAATAGAGTTTGAGATT+TGG + chr1.2:36718996-36719015 None:intergenic 25.0%
!! TTATAGTACTAATTTGCAAG+AGG - chr1.2:36717065-36717084 MS.gene018877:CDS 25.0%
!!! AATGTTAGAGGTGTTAAAAT+TGG - chr1.2:36717851-36717870 MS.gene018877:intron 25.0%
!!! TTAAAGGTTTTAATCGATGA+AGG + chr1.2:36717213-36717232 None:intergenic 25.0%
AAACTTGAATAAGGTCGATT+TGG - chr1.2:36717302-36717321 MS.gene018877:intron 30.0%
ATATATATATGAATGCAGGG+TGG - chr1.2:36719653-36719672 MS.gene018877:intron 30.0%
ATGGAAATGGAAATATTTGG+TGG - chr1.2:36718370-36718389 MS.gene018877:intron 30.0%
ATGGAGTAAGAATTAAGACA+TGG - chr1.2:36719515-36719534 MS.gene018877:intron 30.0%
CGTGTTTGACAAGTTATTTA+TGG - chr1.2:36718011-36718030 MS.gene018877:CDS 30.0%
GAGGATTTGACTGTAAAAAA+TGG - chr1.2:36718850-36718869 MS.gene018877:intron 30.0%
GATAATTCATTCTTCAGCAT+TGG - chr1.2:36719415-36719434 MS.gene018877:intron 30.0%
GATGTATGTGGTTCATAATA+TGG - chr1.2:36717545-36717564 MS.gene018877:intron 30.0%
GTGTTGTACCAAAACATAAA+AGG - chr1.2:36720275-36720294 MS.gene018877:CDS 30.0%
GTTCAGAAACTATCTGTTAA+AGG - chr1.2:36718333-36718352 MS.gene018877:intron 30.0%
GTTCCACCATCATTTATATA+AGG + chr1.2:36717120-36717139 None:intergenic 30.0%
TATATATATGAATGCAGGGT+GGG - chr1.2:36719654-36719673 MS.gene018877:intron 30.0%
TATTCCTGAAACAAATTCCT+TGG + chr1.2:36719461-36719480 None:intergenic 30.0%
TCAAACTCTATTATAGGAAC+TGG - chr1.2:36719000-36719019 MS.gene018877:intron 30.0%
TCACCTTATATAAATGATGG+TGG - chr1.2:36717114-36717133 MS.gene018877:CDS 30.0%
TCCATACTCATCAACATTAA+AGG + chr1.2:36717229-36717248 None:intergenic 30.0%
TCTCAACAATTGAACTAAGT+GGG + chr1.2:36717092-36717111 None:intergenic 30.0%
TTCTCAACAATTGAACTAAG+TGG + chr1.2:36717093-36717112 None:intergenic 30.0%
! ACCTTTAATGTTGATGAGTA+TGG - chr1.2:36717225-36717244 MS.gene018877:CDS 30.0%
! AGATAATTTAGCTCCATTCA+CGG + chr1.2:36719485-36719504 None:intergenic 30.0%
! CACTTGTTCCTTTTATGTTT+TGG + chr1.2:36720286-36720305 None:intergenic 30.0%
!! ATGATACTCTTTGATTTGCA+AGG + chr1.2:36718228-36718247 None:intergenic 30.0%
!! TGATACTCTTTGATTTGCAA+GGG + chr1.2:36718227-36718246 None:intergenic 30.0%
!! TTTAATACCTGATTTTGGCA+TGG + chr1.2:36719776-36719795 None:intergenic 30.0%
!!! TGCTTATATTTTGAAACGGA+GGG - chr1.2:36717610-36717629 MS.gene018877:intron 30.0%
!!! TGCTTATATTTTGACACAGA+GGG + chr1.2:36717495-36717514 None:intergenic 30.0%
!!! TTGCTTATATTTTGAAACGG+AGG - chr1.2:36717609-36717628 MS.gene018877:intron 30.0%
!!! TTGCTTATATTTTGACACAG+AGG + chr1.2:36717496-36717515 None:intergenic 30.0%
AAACTATCTGTTAAAGGTGG+TGG - chr1.2:36718339-36718358 MS.gene018877:intron 35.0%
ACATGAATTCCATCAGTGTT+TGG + chr1.2:36718955-36718974 None:intergenic 35.0%
ACTCGTGCCATAAACAAAAT+TGG - chr1.2:36720085-36720104 MS.gene018877:intron 35.0%
AGTAAGAATTAAGACATGGC+AGG - chr1.2:36719519-36719538 MS.gene018877:intron 35.0%
AGTATCATAGTTCAGATCTC+TGG - chr1.2:36718240-36718259 MS.gene018877:CDS 35.0%
ATAGAGGAAATGCATGAACA+TGG - chr1.2:36720470-36720489 MS.gene018877:CDS 35.0%
ATCAAACATAAGCCAATGTG+TGG + chr1.2:36718310-36718329 None:intergenic 35.0%
CAACACTAACAACGATTACA+TGG + chr1.2:36719880-36719899 None:intergenic 35.0%
CAAGTAGCATGTTCTTCTAA+GGG - chr1.2:36718144-36718163 MS.gene018877:intron 35.0%
CAGAAACTATCTGTTAAAGG+TGG - chr1.2:36718336-36718355 MS.gene018877:intron 35.0%
GAATGAGAGATATCTTTGGA+TGG + chr1.2:36717016-36717035 None:intergenic 35.0%
TCAAACATAAGCCAATGTGT+GGG + chr1.2:36718309-36718328 None:intergenic 35.0%
TCGATACCCAAACAAAGTAA+CGG - chr1.2:36720047-36720066 MS.gene018877:intron 35.0%
TTCTGCCAATGTTAGAGTTT+CGG - chr1.2:36718900-36718919 MS.gene018877:intron 35.0%
TTGAGCTTAAAGAGCAAGTT+GGG - chr1.2:36717177-36717196 MS.gene018877:CDS 35.0%
TTTCCTCTATGTAATTGCAG+CGG + chr1.2:36720460-36720479 None:intergenic 35.0%
TTTGAGCTTAAAGAGCAAGT+TGG - chr1.2:36717176-36717195 MS.gene018877:CDS 35.0%
TTTGTACAAGTGCAACAACT+TGG - chr1.2:36718822-36718841 MS.gene018877:intron 35.0%
! ATCAGTTTTACCATCTCCTT+GGG + chr1.2:36717253-36717272 None:intergenic 35.0%
! CTCTAACATTGGCAGAATTT+TGG + chr1.2:36718897-36718916 None:intergenic 35.0%
! TTGGTAATTGCAGAAATCTG+CGG - chr1.2:36720238-36720257 MS.gene018877:intron 35.0%
!! AAATGATGGTGGAACATTCA+AGG - chr1.2:36717125-36717144 MS.gene018877:CDS 35.0%
!! CACAAGGCCAATTTTGTTTA+TGG + chr1.2:36720095-36720114 None:intergenic 35.0%
!! GATTTGGATGTTTTGAGTGT+TGG + chr1.2:36718980-36718999 None:intergenic 35.0%
!! GGTCTTGTTTGTAATCAGAT+GGG + chr1.2:36718287-36718306 None:intergenic 35.0%
!! GTCTGTAGCTTTAAGATTCT+TGG + chr1.2:36719285-36719304 None:intergenic 35.0%
AAAGCTACAGACATAACCTG+CGG - chr1.2:36719293-36719312 MS.gene018877:CDS 40.0%
AACATAGGCCTTGAACTTGA+AGG - chr1.2:36720371-36720390 MS.gene018877:CDS 40.0%
ACTCTTTCAGGCATTCAAGA+AGG - chr1.2:36718116-36718135 MS.gene018877:intron 40.0%
AGAAATCTGCGGTTCAGATA+AGG - chr1.2:36720249-36720268 MS.gene018877:intron 40.0%
CAAACATAAGCCAATGTGTG+GGG + chr1.2:36718308-36718327 None:intergenic 40.0%
CGATACCCAAACAAAGTAAC+GGG - chr1.2:36720048-36720067 MS.gene018877:intron 40.0%
GATGAAGCTTCTTTAGCACA+AGG - chr1.2:36719963-36719982 MS.gene018877:intron 40.0%
GCAAGTAGCATGTTCTTCTA+AGG - chr1.2:36718143-36718162 MS.gene018877:intron 40.0%
GGGATACTATTGCAGAACAT+AGG - chr1.2:36720356-36720375 MS.gene018877:CDS 40.0%
GTTAAGCCAATCACATTCTC+TGG - chr1.2:36718201-36718220 MS.gene018877:CDS 40.0%
GTTTCAGGAATAACCGTGAA+TGG - chr1.2:36719469-36719488 MS.gene018877:intron 40.0%
TCTGCCAATGTTAGAGTTTC+GGG - chr1.2:36718901-36718920 MS.gene018877:intron 40.0%
TGCAATAGTATCCCTTGACA+TGG + chr1.2:36720350-36720369 None:intergenic 40.0%
TGGTAAAACTGATGACACAC+AGG - chr1.2:36717260-36717279 MS.gene018877:CDS 40.0%
TTCAGGCATTCAAGAAGGTT+TGG - chr1.2:36718121-36718140 MS.gene018877:intron 40.0%
TTCCTCTATGTAATTGCAGC+GGG + chr1.2:36720459-36720478 None:intergenic 40.0%
TTGTTTATGGCACGAGTAGA+TGG + chr1.2:36720082-36720101 None:intergenic 40.0%
! ATGGGTTATCTGATGCTACA+AGG + chr1.2:36718269-36718288 None:intergenic 40.0%
! CATCAGTTTTACCATCTCCT+TGG + chr1.2:36717254-36717273 None:intergenic 40.0%
! TCTTCAGCATTGGAAGCTTA+GGG - chr1.2:36719425-36719444 MS.gene018877:intron 40.0%
! TTCTAAGGGATCAGTTGTTG+TGG - chr1.2:36718158-36718177 MS.gene018877:intron 40.0%
! TTCTTCAGCATTGGAAGCTT+AGG - chr1.2:36719424-36719443 MS.gene018877:intron 40.0%
!! GGGTCTTGTTTGTAATCAGA+TGG + chr1.2:36718288-36718307 None:intergenic 40.0%
!!! TTCTTTTTTGCAGCCTTGCA+AGG - chr1.2:36718521-36718540 MS.gene018877:CDS 40.0%
ACAAACAAGACCCCACACAT+TGG - chr1.2:36718295-36718314 MS.gene018877:intron 45.0%
ACAGAGTCCATGCCAAAATC+AGG - chr1.2:36719766-36719785 MS.gene018877:intron 45.0%
AGCCAGAACTTTCCATGTCA+AGG - chr1.2:36720335-36720354 MS.gene018877:CDS 45.0%
ATAGGCCTTGAACTTGAAGG+TGG - chr1.2:36720374-36720393 MS.gene018877:CDS 45.0%
ATGCATGAACATGGTGGCTT+TGG - chr1.2:36720479-36720498 MS.gene018877:CDS 45.0%
CAGTGACTGCTTGTTCTTTG+GGG + chr1.2:36720005-36720024 None:intergenic 45.0%
GAGACCCGAAACTCTAACAT+TGG + chr1.2:36718908-36718927 None:intergenic 45.0%
GAGGAAATGCATGAACATGG+TGG - chr1.2:36720473-36720492 MS.gene018877:CDS 45.0%
GCAGTGACTGCTTGTTCTTT+GGG + chr1.2:36720006-36720025 None:intergenic 45.0%
GCCAGAACTTTCCATGTCAA+GGG - chr1.2:36720336-36720355 MS.gene018877:CDS 45.0%
GGTGGAACCATTGATGGAAA+TGG - chr1.2:36718357-36718376 MS.gene018877:intron 45.0%
TAAGGGATCAGTTGTTGTGG+AGG - chr1.2:36718161-36718180 MS.gene018877:intron 45.0%
TATTACCTGATACCATGGCC+TGG + chr1.2:36719320-36719339 None:intergenic 45.0%
TCCCTTGACATGGAAAGTTC+TGG + chr1.2:36720340-36720359 None:intergenic 45.0%
TCCTCTATGTAATTGCAGCG+GGG + chr1.2:36720458-36720477 None:intergenic 45.0%
TGCAGTGACTGCTTGTTCTT+TGG + chr1.2:36720007-36720026 None:intergenic 45.0%
TTTATGGCACGAGTAGATGG+TGG + chr1.2:36720079-36720098 None:intergenic 45.0%
! CTTCAGCATTGGAAGCTTAG+GGG - chr1.2:36719426-36719445 MS.gene018877:intron 45.0%
! GGCTCCAAGGAATTTGTTTC+AGG - chr1.2:36719454-36719473 MS.gene018877:intron 45.0%
! GTGCAACAACTTGGTAGTTG+AGG - chr1.2:36718831-36718850 MS.gene018877:intron 45.0%
! TCGGACCCGTTACTTTGTTT+GGG + chr1.2:36720056-36720075 None:intergenic 45.0%
!! AAAGGTGGTGGAACCATTGA+TGG - chr1.2:36718351-36718370 MS.gene018877:intron 45.0%
!! TAATTTATAATCAAATATTA+TGG - chr1.2:36719839-36719858 MS.gene018877:intron 5.0%
!!! AGATAAATTTAAAATAAAAA+TGG + chr1.2:36717880-36717899 None:intergenic 5.0%
!!! TCTTATTTTTTTAAATTTTT+TGG + chr1.2:36717956-36717975 None:intergenic 5.0%
ATATGAATGCAGGGTGGGTC+AGG - chr1.2:36719659-36719678 MS.gene018877:intron 50.0%
ATTGGAAGCTTAGGGGAAGG+GGG - chr1.2:36719433-36719452 MS.gene018877:intron 50.0%
CAAGGGCCAGAGAATGTGAT+TGG + chr1.2:36718210-36718229 None:intergenic 50.0%
CATTGGAAGCTTAGGGGAAG+GGG - chr1.2:36719432-36719451 MS.gene018877:intron 50.0%
CCTCTATGTAATTGCAGCGG+GGG + chr1.2:36720457-36720476 None:intergenic 50.0%
GAGGACAGTCCAAACACTGA+TGG - chr1.2:36718943-36718962 MS.gene018877:intron 50.0%
GCATTGGAAGCTTAGGGGAA+GGG - chr1.2:36719431-36719450 MS.gene018877:intron 50.0%
TCAGTGTTTGGACTGTCCTC+TGG + chr1.2:36718943-36718962 None:intergenic 50.0%
TGAACTTGAAGGTGGAGGAG+AGG - chr1.2:36720382-36720401 MS.gene018877:CDS 50.0%
! AGCATTGGAAGCTTAGGGGA+AGG - chr1.2:36719430-36719449 MS.gene018877:intron 50.0%
! CTCCTCCACCTTCAAGTTCA+AGG + chr1.2:36720382-36720401 None:intergenic 50.0%
! GTCGGACCCGTTACTTTGTT+TGG + chr1.2:36720057-36720076 None:intergenic 50.0%
! GTTGATGAGTATGGAGCCCA+AGG - chr1.2:36717234-36717253 MS.gene018877:CDS 50.0%
ACAGACATAACCTGCGGACC+AGG - chr1.2:36719299-36719318 MS.gene018877:CDS 55.0%
CCCCCGCTGCAATTACATAG+AGG - chr1.2:36720454-36720473 MS.gene018877:CDS 55.0%
GAGTATGGAGCCCAAGGAGA+TGG - chr1.2:36717240-36717259 MS.gene018877:CDS 55.0%
GGCCTTGAACTTGAAGGTGG+AGG - chr1.2:36720377-36720396 MS.gene018877:CDS 55.0%
GTGGTGGCTGAAAGCTCACA+AGG + chr1.2:36720111-36720130 None:intergenic 55.0%
TCTCACTGTGACAGCACCAG+AGG - chr1.2:36718924-36718943 MS.gene018877:intron 55.0%
TGAAGGTGGAGGAGAGGCTA+AGG - chr1.2:36720388-36720407 MS.gene018877:CDS 55.0%
! TGGCACGAGTAGATGGTGGT+CGG + chr1.2:36720075-36720094 None:intergenic 55.0%
ATAACCTGCGGACCAGGCCA+TGG - chr1.2:36719305-36719324 MS.gene018877:CDS 60.0%
ACCGTAGGGGCAGCCTTGCA+AGG + chr1.2:36718537-36718556 None:intergenic 65.0%
CTTAGGGGAAGGGGGCTCCA+AGG - chr1.2:36719441-36719460 MS.gene018877:intron 65.0%
GATACCATGGCCTGGTCCGC+AGG + chr1.2:36719312-36719331 None:intergenic 65.0%
GCCTTGCAAGGCTGCCCCTA+CGG - chr1.2:36718533-36718552 MS.gene018877:CDS 65.0%
GCGGACCAGGCCATGGTATC+AGG - chr1.2:36719312-36719331 MS.gene018877:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 36717009 36720523 36717009 ID=MS.gene018877
chr1.2 mRNA 36717009 36720523 36717009 ID=MS.gene018877.t1;Parent=MS.gene018877
chr1.2 exon 36720251 36720523 36720251 ID=MS.gene018877.t1.exon1;Parent=MS.gene018877.t1
chr1.2 CDS 36720251 36720523 36720251 ID=cds.MS.gene018877.t1;Parent=MS.gene018877.t1
chr1.2 exon 36719292 36719406 36719292 ID=MS.gene018877.t1.exon2;Parent=MS.gene018877.t1
chr1.2 CDS 36719292 36719406 36719292 ID=cds.MS.gene018877.t1;Parent=MS.gene018877.t1
chr1.2 exon 36719110 36719258 36719110 ID=MS.gene018877.t1.exon3;Parent=MS.gene018877.t1
chr1.2 CDS 36719110 36719258 36719110 ID=cds.MS.gene018877.t1;Parent=MS.gene018877.t1
chr1.2 exon 36718978 36718998 36718978 ID=MS.gene018877.t1.exon4;Parent=MS.gene018877.t1
chr1.2 CDS 36718978 36718998 36718978 ID=cds.MS.gene018877.t1;Parent=MS.gene018877.t1
chr1.2 exon 36718511 36718718 36718511 ID=MS.gene018877.t1.exon5;Parent=MS.gene018877.t1
chr1.2 CDS 36718511 36718718 36718511 ID=cds.MS.gene018877.t1;Parent=MS.gene018877.t1
chr1.2 exon 36718199 36718280 36718199 ID=MS.gene018877.t1.exon6;Parent=MS.gene018877.t1
chr1.2 CDS 36718199 36718280 36718199 ID=cds.MS.gene018877.t1;Parent=MS.gene018877.t1
chr1.2 exon 36717992 36718100 36717992 ID=MS.gene018877.t1.exon7;Parent=MS.gene018877.t1
chr1.2 CDS 36717992 36718100 36717992 ID=cds.MS.gene018877.t1;Parent=MS.gene018877.t1
chr1.2 exon 36717745 36717861 36717745 ID=MS.gene018877.t1.exon8;Parent=MS.gene018877.t1
chr1.2 CDS 36717745 36717861 36717745 ID=cds.MS.gene018877.t1;Parent=MS.gene018877.t1
chr1.2 exon 36717009 36717281 36717009 ID=MS.gene018877.t1.exon9;Parent=MS.gene018877.t1
chr1.2 CDS 36717009 36717281 36717009 ID=cds.MS.gene018877.t1;Parent=MS.gene018877.t1
Gene Sequence

>MS.gene018877

ATGGCCATCCAAAGATATCTCTCATTCATTATGATCATGATTTATTTTGTTGCTTGTTATAGTACTAATTTGCAAGAGGACCCACTTAGTTCAATTGTTGAGAATTCACCTTATATAAATGATGGTGGAACATTCAAGGATTTTCTCATGCAAAGTACAGATCGTGTTTTGAGCTTAAAGAGCAAGTTGGGTGACACTTCTCCTTCATCGATTAAAACCTTTAATGTTGATGAGTATGGAGCCCAAGGAGATGGTAAAACTGATGACACACAGGTATATATATTTATTTTGACAAACTTGAATAAGGTCGATTTGGATAGAGAAATGAATTTTGTACACCATTTTTCGACAACTCTATATATAAACTATTTTTATAACTTATTTCGATAAAGTAAAGTGAAACCATTTTCTTACAAGTTGTTTTTATAAGCTATTATGGAGAGCTTGTAGAAATCTAAAAACCGTTTGTAGAAATGTAATACTCCCTCTGTGTCAAAATATAAGCAAAATTCACTTTTTAGATTTATTCATTTAATGATGTATGTGGTTCATAATATGGACCATATACATCATTAAATGAATGAACTTAAAAAGTGAATTTTGCTTATATTTTGAAACGGAGGGAGTAAGTTGTTTCCATAAATTTCCCAAACAATATGACAAGTAATTATAGTTATAGAAAATATCAAATTAATAATAATTCAAACCAAACAAGTTCTAATGTTATTATACTAGTTGAAAATAATTGAATTTTGAATCTTAAGTTATACTAGTTGAAAATAATTGAATTTATAAAAATGAAAGAAAGAAAAACATGAAATTTGTCTTTAATTCTATCACTAAATGTTAGAGGTGTTAAAATTGGAAACCATTTTTATTTTAAATTTATCTCAAATATTCATCGATAATAAAAATAATTCTAGCGGTAGACTTTATTATTATTACCAAAAAATTTAAAAAAATAAGATTTTATTCTTTTGCTAATATGGTCTATATCAATATCGTGTTTGACAAGTTATTTATGGTCTATATCAATATCGTGTTTGACAAGTTATTTTTTTAAGCTTAATAAATAATTTTAAAAAAAAATGACAATATTTTAATTCTACTCTTTCAGGCATTCAAGAAGGTTTGGCAAGTAGCATGTTCTTCTAAGGGATCAGTTGTTGTGGAGGCTCAAAAGAATTATCTTGTTAAGCCAATCACATTCTCTGGCCCTTGCAAATCAAAGAGTATCATAGTTCAGATCTCTGGAAGCCTTGTAGCATCAGATAACCCATCTGATTACAAACAAGACCCCACACATTGGCTTATGTTTGATAGTGTTCAGAAACTATCTGTTAAAGGTGGTGGAACCATTGATGGAAATGGAAATATTTGGTGGCAGAACTCATGCAAAACGAACAAAAAACTCGTAAGATATAACAAGACAAATTTGTTATTATAATATATATCCATTTACTTAACATAAATCTTATTCAAGTGCTAATTTTTTTTTTTTTTTTTATGTTTTTCTTTTTTGCAGCCTTGCAAGGCTGCCCCTACGGTATGTATAATATAACTCTCTCTCTCTCACTAATATATTAACTTTTTAATTATAATAATATCAATTTAATTTGTATCAGTAACCTTAACTCACTTGATACATAAAAAGATTGTATTATATATGCACGTGCCGAAGTTCAAAGTAAAACTATAAATTACTTTAACATATATACTCCCTTTTAGATGTATCTGTAAAAAAAAAAAATTACACCGATGGTGCAAAATATTAATGTCAATTATATTATGGTTTGACTTTGTAGGCGTTAACTTTGTACAAGTGCAACAACTTGGTAGTTGAGGATTTGACTGTAAAAAATGGGCAACAAATTCATGTTCAATTCCAAAATTCTGCCAATGTTAGAGTTTCGGGTCTCACTGTGACAGCACCAGAGGACAGTCCAAACACTGATGGAATTCATGTCACCAACACTCAAAACATCCAAATCTCAAACTCTATTATAGGAACTGGTATTCTCGATTCATTTGATATATCTCATATATTACCACTTCTTAGAAAAATTTAAATTGACAACAAAAAAATTGAGATAAAAAAATAAGAAATTTATCTCTAATTAGTATTAGATACATTTTTTTTTTTCATCACTATTTTTCTTATCTAAGTCAATTTTTTAAGTAATATATATTTCAATTTATTAAATATCAATTTTAGTTTCAAGTTTAAATATGTTTGTTTGCAGGGGATGATTGTATATCAATTGTAAATGGAACCAAGAATCTTAAAGCTACAGACATAACCTGCGGACCAGGCCATGGTATCAGGTAATAATTAATTAATTACCTTTAATAATATCTTCATCTTAGTAATTAAATATCGTTAAATTAAACTTCACACATGTTAATGATAATTCATTCTTCAGCATTGGAAGCTTAGGGGAAGGGGGCTCCAAGGAATTTGTTTCAGGAATAACCGTGAATGGAGCTAAATTATCTAGAACTACTAATGGAGTAAGAATTAAGACATGGCAGGTAGTTAATATTAATTTCAAATTTTGAACTACTTCAATTTAGGCCTCATTTTTTTTTTTGTACACTTCAATTTTAGCTTTCTGACCCAATACACTTGATAATATCTATATACATATATATATGAATGCAGGGTGGGTCAGGAAGTGCAAGCAACATTAAATTTCAGAACATTCAAATGGAAAATGTAACTAACCCCATAATAATAGATCAAAACTACTGTGATCAACAGAGTCCATGCCAAAATCAGGTATTAAAATTTTTCTTTTATTTTGTCTATGAAATTGATCTATATTAGACATAATTTATAATCAAATATTATGGTATCATTAATTTGAACCATGTAATCGTTGTTAGTGTTGATATAAAATTTGGTTAATTAATTTTTTTTTTAAGAATCAAAAATGGAATATATTAATAACAACGATGAAGCTTCTTTAGCACAAGGTGTACTAAAGAAGTCACCCCAAAGAACAAGCAGTCACTGCATAATTACAAAAACATGTCAGTCGATACCCAAACAAAGTAACGGGTCCGACCACCATCTACTCGTGCCATAAACAAAATTGGCCTTGTGAGCTTTCAGCCACCACAAAGAATTATACTTAACCTTTTCTAAAATATCTATCATATTAAAATGAGTATTCTTGAATATTCTATTATTTCTTTCATTCCAAACTAATTTGGTTAATTAATTAATTTGGTAATTGCAGAAATCTGCGGTTCAGATAAGGAATGTGTTGTACCAAAACATAAAAGGAACAAGTGCTTCTGATGTAGCTATGCAATTTAATTGTAGCCAGAACTTTCCATGTCAAGGGATACTATTGCAGAACATAGGCCTTGAACTTGAAGGTGGAGGAGAGGCTAAGGCTTCATGCAACAATGTGAAATTGTCATACAAAGGAAATGTTAGCCCCCGCTGCAATTACATAGAGGAAATGCATGAACATGGTGGCTTTGGAAAGAATCATAGTATGAATTAA
Protein sequence

>MS.gene018877.t1

MAIQRYLSFIMIMIYFVACYSTNLQEDPLSSIVENSPYINDGGTFKDFLMQSTDRVLSLKSKLGDTSPSSIKTFNVDEYGAQGDGKTDDTQAFKKVWQVACSSKGSVVVEAQKNYLVKPITFSGPCKSKTSDNPSDYKQDPTHWLMFDSVQKLSVKGGGTIDGNGNIWWQNSCKTNKKLPCKAAPTALTLYKCNNLVVEDLTVKNGQQIHVQFQNSANVRVSGLTVTAPEDSPNTDGIHVTNTQNIQISNSIIGTGDDCISIVNGTKNLKATDITCGPGHGISIGSLGEGGSKEFVSGITVNGAKLSRTTNGVRIKTWQGGSGSASNIKFQNIQMENVTNPIIIDQNYCDQQSPCQNQKSAVQIRNVLYQNIKGTSASDVAMQFNCSQNFPCQGILLQNIGLELEGGGEAKASCNNVKLSYKGNVSPRCNYIEEMHEHGGFGKNHSMN