AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene92756

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92756.t1 MTR_7g073430 92.226 283 14 2 1 275 1 283 0.0 538
MS.gene92756.t1 MTR_7g073380 81.973 294 34 4 1 275 1 294 2.03e-175 485
MS.gene92756.t1 MTR_0002s1250 43.952 248 121 7 12 253 5 240 2.48e-62 197
MS.gene92756.t1 MTR_8g005750 50.485 206 87 5 15 218 6 198 1.90e-60 193
MS.gene92756.t1 MTR_8g032510 46.948 213 102 5 13 218 7 215 3.30e-56 182
MS.gene92756.t1 MTR_2g075690 38.783 263 124 8 1 229 1 260 2.22e-47 160
MS.gene92756.t1 MTR_2g075700 39.130 253 125 5 6 229 7 259 2.80e-43 149
MS.gene92756.t1 MTR_2g075680 38.372 258 122 7 10 231 12 268 1.30e-38 137
MS.gene92756.t1 MTR_5g067700 38.362 232 109 13 1 228 1 202 2.33e-37 132
MS.gene92756.t1 MTR_3g093830 43.386 189 84 9 20 195 23 201 4.60e-35 128
MS.gene92756.t1 MTR_2g075750 55.446 101 44 1 106 205 13 113 6.33e-35 124
MS.gene92756.t1 MTR_2g075610 47.727 132 62 3 106 232 14 143 2.04e-34 123
MS.gene92756.t1 MTR_7g117200 34.848 198 100 5 11 194 9 191 8.87e-28 109
MS.gene92756.t1 MTR_3g090860 33.498 203 102 4 9 185 2 197 3.01e-26 105
MS.gene92756.t1 MTR_8g099350 33.663 202 101 7 1 180 1 191 7.73e-24 99.4
MS.gene92756.t1 MTR_8g027860 52.941 85 32 1 104 180 111 195 2.92e-23 97.4
MS.gene92756.t1 MTR_5g067680 41.667 108 57 2 74 180 159 261 2.65e-19 86.7
MS.gene92756.t1 MTR_7g028415 55.932 59 23 1 121 179 93 148 6.06e-16 73.9
MS.gene92756.t1 MTR_7g028710 55.932 59 23 1 121 179 93 148 6.06e-16 73.9
MS.gene92756.t1 MTR_5g073620 42.667 75 42 1 117 190 668 742 6.23e-15 75.1
MS.gene92756.t1 MTR_8g092140 42.169 83 38 3 96 178 142 214 6.29e-14 69.7
MS.gene92756.t1 MTR_5g043880 38.710 93 53 2 121 212 124 213 1.19e-13 69.7
MS.gene92756.t1 MTR_1g086790 50.847 59 26 1 121 179 158 213 1.65e-13 69.7
MS.gene92756.t1 MTR_7g110720 39.316 117 65 3 65 178 158 271 2.07e-13 70.1
MS.gene92756.t1 MTR_7g079010 50.000 58 26 1 121 178 141 195 2.89e-13 67.8
MS.gene92756.t1 MTR_3g095080 49.153 59 27 1 121 179 168 223 3.44e-13 67.8
MS.gene92756.t1 MTR_3g095080 49.153 59 27 1 121 179 144 199 4.95e-13 67.0
MS.gene92756.t1 MTR_7g109800 50.847 59 26 1 121 179 145 200 5.27e-13 68.2
MS.gene92756.t1 MTR_2g088000 36.449 107 65 2 96 202 325 428 6.67e-13 68.9
MS.gene92756.t1 MTR_8g096730 48.276 58 27 1 121 178 70 124 6.93e-13 65.1
MS.gene92756.t1 MTR_8g028565 44.872 78 39 2 104 179 136 211 1.10e-12 67.4
MS.gene92756.t1 MTR_4g094588 51.724 58 25 1 121 178 178 232 1.24e-12 67.4
MS.gene92756.t1 MTR_3g053330 38.384 99 58 2 104 202 235 330 1.62e-12 67.4
MS.gene92756.t1 MTR_5g091390 50.000 58 26 1 121 178 157 211 1.79e-12 66.6
MS.gene92756.t1 MTR_8g087000 36.893 103 53 2 115 217 71 161 2.02e-12 65.9
MS.gene92756.t1 MTR_8g087000 36.893 103 53 2 115 217 70 160 2.20e-12 65.9
MS.gene92756.t1 MTR_7g110720 46.053 76 38 2 103 178 172 244 5.68e-12 65.9
MS.gene92756.t1 MTR_8g007270 43.529 85 43 2 94 178 129 208 5.70e-12 64.3
MS.gene92756.t1 MTR_4g049790 33.846 130 75 3 77 206 277 395 6.31e-12 65.9
MS.gene92756.t1 MTR_1g009613 36.842 95 56 3 85 178 226 317 6.77e-12 65.1
MS.gene92756.t1 MTR_2g033820 47.458 59 28 1 121 179 203 258 7.21e-12 65.5
MS.gene92756.t1 MTR_2g032030 35.185 108 56 2 83 178 217 322 8.57e-12 65.1
MS.gene92756.t1 MTR_4g122530 44.828 58 29 1 121 178 208 262 9.83e-12 65.1
MS.gene92756.t1 MTR_2g032030 35.185 108 56 2 83 178 217 322 1.05e-11 65.1
MS.gene92756.t1 MTR_7g062220 51.724 58 25 1 121 178 124 178 1.87e-11 63.9
MS.gene92756.t1 MTR_3g104750 47.458 59 28 1 121 179 104 159 1.98e-11 61.6
MS.gene92756.t1 MTR_4g127040 40.000 85 40 3 102 178 219 300 2.11e-11 63.5
MS.gene92756.t1 MTR_4g082580 48.276 58 27 1 121 178 278 332 2.21e-11 63.9
MS.gene92756.t1 MTR_2g023930 38.384 99 50 2 80 178 273 360 2.98e-11 63.9
MS.gene92756.t1 MTR_1g015140 32.800 125 68 4 66 179 38 157 3.79e-11 60.8
MS.gene92756.t1 MTR_2g016770 39.785 93 52 3 87 178 1 90 6.36e-11 61.2
MS.gene92756.t1 MTR_2g016770 40.741 81 45 2 99 178 4 82 8.60e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92756.t1 AT3G56400 41.436 181 82 4 13 180 10 179 1.75e-38 137
MS.gene92756.t1 AT2G40750 35.885 209 102 8 3 180 4 211 1.29e-26 106
MS.gene92756.t1 AT1G66550 34.653 202 110 7 13 210 8 191 3.68e-26 103
MS.gene92756.t1 AT2G46400 31.301 246 116 8 14 234 8 225 1.04e-25 103
MS.gene92756.t1 AT1G66550 33.000 200 111 6 13 210 8 186 3.91e-25 100
MS.gene92756.t1 AT5G01900 34.896 192 103 5 13 197 7 183 4.29e-25 100
MS.gene92756.t1 AT5G22570 34.637 179 98 5 13 185 9 174 3.54e-24 99.0
MS.gene92756.t1 AT4G11070 36.041 197 95 6 11 180 8 200 1.36e-23 97.8
MS.gene92756.t1 AT1G66560 34.706 170 96 4 15 183 10 165 1.53e-23 96.7
MS.gene92756.t1 AT4G11070 37.079 178 87 5 11 180 8 168 1.98e-22 94.4
MS.gene92756.t1 AT2G40740 31.414 191 104 5 15 180 44 232 9.52e-22 92.4
MS.gene92756.t1 AT2G40740 31.414 191 104 5 15 180 53 241 1.06e-21 92.4
MS.gene92756.t1 AT1G66600 33.889 180 88 7 13 183 8 165 2.79e-21 90.1
MS.gene92756.t1 AT4G23810 49.412 85 35 1 104 180 133 217 1.41e-19 87.0
MS.gene92756.t1 AT1G80590 29.648 199 102 5 12 208 7 169 3.26e-19 84.3
MS.gene92756.t1 AT5G24110 33.146 178 92 4 23 185 12 177 1.18e-18 84.3
MS.gene92756.t1 AT5G45260 40.000 105 58 2 79 178 1161 1265 2.49e-15 76.3
MS.gene92756.t1 AT1G69310 38.017 121 57 5 68 178 89 201 3.81e-15 74.3
MS.gene92756.t1 AT1G69310 38.017 121 57 5 68 178 89 201 3.81e-15 74.3
MS.gene92756.t1 AT1G69310 38.017 121 57 5 68 178 89 201 3.81e-15 74.3
MS.gene92756.t1 AT5G13080 47.761 67 32 1 121 187 67 130 1.37e-13 67.0
MS.gene92756.t1 AT5G41570 51.724 58 25 1 121 178 98 152 1.54e-13 67.8
MS.gene92756.t1 AT4G04450 37.719 114 68 2 90 202 166 277 1.57e-13 70.5
MS.gene92756.t1 AT2G34830 35.246 122 65 3 62 178 167 279 2.18e-13 70.1
MS.gene92756.t1 AT2G34830 35.246 122 65 3 62 178 158 270 2.20e-13 70.1
MS.gene92756.t1 AT4G04450 37.719 114 68 2 90 202 260 371 2.30e-13 70.1
MS.gene92756.t1 AT5G49520 49.153 59 27 1 121 179 221 276 3.30e-13 69.3
MS.gene92756.t1 AT3G01970 42.045 88 40 2 121 208 65 141 3.69e-13 65.9
MS.gene92756.t1 AT1G64000 50.000 58 26 1 121 178 114 168 7.44e-13 66.2
MS.gene92756.t1 AT1G29860 42.308 78 41 2 106 182 120 194 8.39e-13 67.4
MS.gene92756.t1 AT2G47260 37.634 93 54 2 88 179 140 229 8.44e-13 67.8
MS.gene92756.t1 AT4G18170 42.169 83 44 2 104 185 154 233 1.29e-12 67.4
MS.gene92756.t1 AT2G37260 46.970 66 32 1 121 186 349 411 1.68e-12 67.4
MS.gene92756.t1 AT2G37260 46.970 66 32 1 121 186 267 329 2.09e-12 66.6
MS.gene92756.t1 AT2G37260 46.970 66 32 1 121 186 269 331 2.15e-12 66.6
MS.gene92756.t1 AT4G39410 40.000 90 49 2 89 178 193 277 2.22e-12 66.2
MS.gene92756.t1 AT2G23320 38.462 104 53 3 83 178 195 295 2.22e-12 66.6
MS.gene92756.t1 AT5G46350 46.154 65 32 1 121 185 183 244 2.48e-12 66.6
MS.gene92756.t1 AT2G46130 46.552 58 28 1 121 178 30 84 2.68e-12 62.4
MS.gene92756.t1 AT2G44745 48.276 58 27 1 121 178 145 199 4.22e-12 64.7
MS.gene92756.t1 AT1G62300 48.649 74 35 2 106 178 296 367 4.57e-12 66.2
MS.gene92756.t1 AT5G52830 38.596 114 54 4 126 235 170 271 5.70e-12 65.5
MS.gene92756.t1 AT4G01250 36.364 110 62 3 71 178 80 183 9.05e-12 64.7
MS.gene92756.t1 AT1G29280 46.667 60 30 1 119 178 72 129 1.25e-11 63.9
MS.gene92756.t1 AT1G68150 34.307 137 76 4 122 250 236 366 1.73e-11 64.3
MS.gene92756.t1 AT3G62340 43.590 78 36 2 121 198 118 187 2.29e-11 63.2
MS.gene92756.t1 AT5G26170 44.828 58 29 1 121 178 113 167 3.56e-11 61.2
MS.gene92756.t1 AT4G22070 54.386 57 24 1 122 178 298 352 3.63e-11 63.5
MS.gene92756.t1 AT4G22070 54.386 57 24 1 122 178 298 352 3.63e-11 63.5
MS.gene92756.t1 AT4G22070 54.386 57 24 1 122 178 298 352 3.63e-11 63.5
MS.gene92756.t1 AT4G22070 54.386 57 24 1 122 178 298 352 3.63e-11 63.5
MS.gene92756.t1 AT5G45050 35.185 108 56 3 81 178 993 1096 7.30e-11 63.2
MS.gene92756.t1 AT5G45050 35.185 108 56 3 81 178 1132 1235 7.35e-11 63.2
MS.gene92756.t1 AT5G45050 35.185 108 56 3 81 178 1104 1207 8.49e-11 62.8
MS.gene92756.t1 AT1G30650 46.774 62 31 1 117 178 213 272 8.63e-11 62.4

Find 58 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATAATCCACCATGATTTC+AGG 0.223815 7.4:-31127803 None:intergenic
GTGGATCTTCTTGAATTCTT+TGG 0.233438 7.4:-31127727 None:intergenic
TTTAAGAAAGAGGCCAATTA+AGG 0.247289 7.4:-31128054 None:intergenic
CACCAAATCTGAAGACTCTT+TGG 0.292085 7.4:+31125926 MS.gene92756:CDS
CATACATGATATCAGAAATA+TGG 0.313913 7.4:-31128024 None:intergenic
CTTCACAAGACAACCTATTC+TGG 0.318721 7.4:+31127752 MS.gene92756:CDS
TTCCAAAGAGTCTTCAGATT+TGG 0.321094 7.4:-31125928 None:intergenic
GGTTATTGTTCAAGAACAAT+AGG 0.331883 7.4:-31125875 None:intergenic
TAAGTTGGTTTGCAAGTTGA+TGG 0.334142 7.4:-31125749 None:intergenic
TGTATGATGATGTCCTTAAT+TGG 0.354460 7.4:+31128041 MS.gene92756:CDS
TTGCAAGAGTTCCATTGTTA+AGG 0.357033 7.4:+31125956 MS.gene92756:CDS
ATAAATATACCTTGGAAAAT+CGG 0.376698 7.4:-31126883 None:intergenic
GGTCATCAGTGGAGAAAGTA+TGG 0.398881 7.4:+31126840 MS.gene92756:CDS
CATTAAGAATATTTCTAAGT+TGG 0.405861 7.4:-31125764 None:intergenic
TTCAAAAGATCTTCAGCAAA+TGG 0.413114 7.4:-31125825 None:intergenic
AGAAATATTCTTAATGAAAG+TGG 0.420955 7.4:+31125771 MS.gene92756:CDS
GAGAAAAGGACAGTCTTGTT+TGG 0.421010 7.4:-31127879 None:intergenic
GTTATTGTTCAAGAACAATA+GGG 0.426826 7.4:-31125874 None:intergenic
CAGTCTTGTTTGGCTGGTGT+TGG 0.428837 7.4:-31127869 None:intergenic
ATAGTTGATGAGTTGTTAAG+AGG 0.433990 7.4:+31125726 MS.gene92756:CDS
GCAAGATTCTACAAGTATGA+TGG 0.441895 7.4:-31127775 None:intergenic
GATAATCCACCATGATTTCA+GGG 0.452507 7.4:-31127802 None:intergenic
AGTCTTGTTTGGCTGGTGTT+GGG 0.452762 7.4:-31127868 None:intergenic
CTTGCAAAACCCTGAAATCA+TGG 0.466864 7.4:+31127793 MS.gene92756:CDS
AAAGGACAGTCTTGTTTGGC+TGG 0.470880 7.4:-31127875 None:intergenic
GATATTGTTCATCCACTCTC+TGG 0.472425 7.4:+31127929 MS.gene92756:CDS
CACTGATGACCATCTTCCTC+AGG 0.473789 7.4:-31126828 None:intergenic
AATCTAGCTCATGGTGGTCG+TGG 0.489503 7.4:+31125699 MS.gene92756:CDS
CAGGAAAATTTCACAAACAT+GGG 0.503777 7.4:+31126788 MS.gene92756:intron
ACAAGTATGATGGCCAGAAT+AGG 0.508994 7.4:-31127765 None:intergenic
AAATCAGAGCCCTCAGAAGT+AGG 0.513880 7.4:-31125897 None:intergenic
TCTGAGCTGCCTGAGGAAGA+TGG 0.519536 7.4:+31126819 MS.gene92756:CDS
ACAGGAAAATTTCACAAACA+TGG 0.526761 7.4:+31126787 MS.gene92756:intron
AATCAGAGCCCTCAGAAGTA+GGG 0.528391 7.4:-31125896 None:intergenic
GAACAATAGGGAATTAGTAA+AGG 0.532955 7.4:-31125862 None:intergenic
GAAGAGGCTGTTACAAAAGA+AGG 0.533769 7.4:+31125982 MS.gene92756:CDS
GGTGATATTGATAATAATGA+TGG 0.535663 7.4:+31125792 MS.gene92756:CDS
GAAAATGAAAATCTAGCTCA+TGG 0.549115 7.4:+31125690 MS.gene92756:CDS
AACAATAACCCTACTTCTGA+GGG 0.553155 7.4:+31125888 MS.gene92756:CDS
GAACAATAACCCTACTTCTG+AGG 0.557215 7.4:+31125887 MS.gene92756:CDS
GCCTCTTCGTTCCTTAACAA+TGG 0.560157 7.4:-31125967 None:intergenic
CAATAGGGAATTAGTAAAGG+TGG 0.561256 7.4:-31125859 None:intergenic
TGCACTCACAAACATGATCA+AGG 0.563442 7.4:+31127683 MS.gene92756:CDS
TGCTTTGCAGAAACTACTAC+AGG 0.577466 7.4:+31127660 MS.gene92756:intron
AAGAAACACGGAAGAGTGAT+CGG 0.578189 7.4:-31127828 None:intergenic
TAGGTTGTCTTGTGAAGAGG+TGG 0.580386 7.4:-31127746 None:intergenic
GAAGGAGTCTGAGCTGCCTG+AGG 0.592747 7.4:+31126812 MS.gene92756:CDS
AATTTCACAAACATGGGAGA+AGG 0.598123 7.4:+31126794 MS.gene92756:CDS
GAATAGGTTGTCTTGTGAAG+AGG 0.606524 7.4:-31127749 None:intergenic
TCAAAAGTGAGTCCAGAGAG+TGG 0.622190 7.4:-31127941 None:intergenic
TATCAGAAATATGGACACCT+AGG 0.634267 7.4:-31128015 None:intergenic
TCCATTGTTAAGGAACGAAG+AGG 0.645691 7.4:+31125966 MS.gene92756:CDS
AACACGGAAGAGTGATCGGT+AGG 0.657967 7.4:-31127824 None:intergenic
CTTGATTCTCATGATCACCT+AGG 0.662285 7.4:+31127998 MS.gene92756:CDS
CTGAGGAAGATGGTCATCAG+TGG 0.677795 7.4:+31126829 MS.gene92756:CDS
GTTGTCAAAACTAAGAAACA+CGG 0.709857 7.4:-31127840 None:intergenic
AATGAAAATCTAGCTCATGG+TGG 0.721998 7.4:+31125693 MS.gene92756:CDS
GCAAAACCCTGAAATCATGG+TGG 0.724951 7.4:+31127796 MS.gene92756:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTATTATTATTATTT+TGG + chr7.4:31126472-31126491 MS.gene92756:intron 0.0%
!! TTCTTAAAAAAAAAAAAAGA+AGG - chr7.4:31126244-31126263 None:intergenic 10.0%
!!! AACTAAATCTTATTTATTAA+AGG - chr7.4:31127212-31127231 None:intergenic 10.0%
!!! ATAATAACAAAAGTATTAAT+TGG - chr7.4:31126392-31126411 None:intergenic 10.0%
!!! TTTTTTTTTTTTGTTACAAT+TGG + chr7.4:31126730-31126749 MS.gene92756:intron 10.0%
!! AAAATTCAGGTATTAATTTA+AGG + chr7.4:31127268-31127287 MS.gene92756:intron 15.0%
!! GTTAGTTAATTTATTGAATT+AGG - chr7.4:31126994-31127013 None:intergenic 15.0%
!!! TGTTTTGAAAATTAATTAAC+CGG - chr7.4:31127382-31127401 None:intergenic 15.0%
!!! TTTACTATATAGTTTTGTTT+AGG + chr7.4:31126202-31126221 MS.gene92756:intron 15.0%
!! AAATGTGGATATAGATATAA+TGG - chr7.4:31126159-31126178 None:intergenic 20.0%
!! AAGGACTATGTTATATAATT+AGG + chr7.4:31126572-31126591 MS.gene92756:intron 20.0%
!! AATGTGGATATAGATATAAT+GGG - chr7.4:31126158-31126177 None:intergenic 20.0%
!! AGAAATATTCTTAATGAAAG+TGG + chr7.4:31125771-31125790 MS.gene92756:CDS 20.0%
!! ATAAATATACCTTGGAAAAT+CGG - chr7.4:31126886-31126905 None:intergenic 20.0%
!! TACATTAGTCAATAAATAAG+AGG - chr7.4:31126297-31126316 None:intergenic 20.0%
!!! CATTAAGAATATTTCTAAGT+TGG - chr7.4:31125767-31125786 None:intergenic 20.0%
!!! CTTTTACATATGAGTAATAT+TGG + chr7.4:31126520-31126539 MS.gene92756:intron 20.0%
!!! TATATACAATTCTTGTTTAC+AGG + chr7.4:31126769-31126788 MS.gene92756:intron 20.0%
!!! TTCACTTATATTTGAACTTT+TGG + chr7.4:31126319-31126338 MS.gene92756:intron 20.0%
!!! TTTCTAAAGTTTGTTAGTTA+TGG + chr7.4:31126620-31126639 MS.gene92756:intron 20.0%
! AAAAGAAGTCAACTCTTAAA+TGG - chr7.4:31126086-31126105 None:intergenic 25.0%
! AAACGAGCAAATTAATAAAG+AGG - chr7.4:31126603-31126622 None:intergenic 25.0%
! AAATTGTAGATGTAGAAATG+TGG - chr7.4:31126174-31126193 None:intergenic 25.0%
! AATTGAATGACCTTGTAAAA+AGG - chr7.4:31127334-31127353 None:intergenic 25.0%
! ATGATGAACAATAATTGATG+GGG - chr7.4:31126547-31126566 None:intergenic 25.0%
! ATTTATTAGCTAGCATCTTA+GGG + chr7.4:31127484-31127503 MS.gene92756:intron 25.0%
! CATACATGATATCAGAAATA+TGG - chr7.4:31128027-31128046 None:intergenic 25.0%
! GACAAACAATAACAAAAGTA+TGG - chr7.4:31126501-31126520 None:intergenic 25.0%
! GATGATGAACAATAATTGAT+GGG - chr7.4:31126548-31126567 None:intergenic 25.0%
! GTTATTGTTCAAGAACAATA+GGG - chr7.4:31125877-31125896 None:intergenic 25.0%
! TATTTATTAGCTAGCATCTT+AGG + chr7.4:31127483-31127502 MS.gene92756:intron 25.0%
! TGTGTCATATAAATATACCT+TGG - chr7.4:31126894-31126913 None:intergenic 25.0%
! TTATTGTTCATCATCATTGA+AGG + chr7.4:31126553-31126572 MS.gene92756:intron 25.0%
!! GGTGATATTGATAATAATGA+TGG + chr7.4:31125792-31125811 MS.gene92756:CDS 25.0%
!! TATATTTGAACTTTTGGATG+AGG + chr7.4:31126325-31126344 MS.gene92756:intron 25.0%
!! TATTGATTAGTAAGAAGTAG+AGG - chr7.4:31127616-31127635 None:intergenic 25.0%
!! TGATGATGAACAATAATTGA+TGG - chr7.4:31126549-31126568 None:intergenic 25.0%
ACAGGAAAATTTCACAAACA+TGG + chr7.4:31126787-31126806 MS.gene92756:intron 30.0%
AGAAACTCCCTTGTAAAAAA+AGG - chr7.4:31126930-31126949 None:intergenic 30.0%
CACACACATATATCATTTCT+TGG + chr7.4:31126702-31126721 MS.gene92756:intron 30.0%
CACTATTTGTACAAATTGTC+CGG + chr7.4:31127360-31127379 MS.gene92756:intron 30.0%
CAGGAAAATTTCACAAACAT+GGG + chr7.4:31126788-31126807 MS.gene92756:intron 30.0%
CTTGTAAAAAAAGGTTTGTG+CGG - chr7.4:31126921-31126940 None:intergenic 30.0%
GAACAATAGGGAATTAGTAA+AGG - chr7.4:31125865-31125884 None:intergenic 30.0%
GGTTATTGTTCAAGAACAAT+AGG - chr7.4:31125878-31125897 None:intergenic 30.0%
GTTGTCAAAACTAAGAAACA+CGG - chr7.4:31127843-31127862 None:intergenic 30.0%
TTAACTGTTGAGAATTGACT+TGG + chr7.4:31127419-31127438 MS.gene92756:intron 30.0%
TTCAAAAGATCTTCAGCAAA+TGG - chr7.4:31125828-31125847 None:intergenic 30.0%
! ATAGATATAATGGGAGAGTT+AGG - chr7.4:31126149-31126168 None:intergenic 30.0%
! CTAGAAATGACCTTTTTACA+AGG + chr7.4:31127321-31127340 MS.gene92756:intron 30.0%
! GAAAATGAAAATCTAGCTCA+TGG + chr7.4:31125690-31125709 MS.gene92756:CDS 30.0%
! TAGATATAATGGGAGAGTTA+GGG - chr7.4:31126148-31126167 None:intergenic 30.0%
! TGTATGATGATGTCCTTAAT+TGG + chr7.4:31128041-31128060 MS.gene92756:CDS 30.0%
!! ATAGTTGATGAGTTGTTAAG+AGG + chr7.4:31125726-31125745 MS.gene92756:CDS 30.0%
!! ATTTGCTGAAGATCTTTTGA+AGG + chr7.4:31125827-31125846 MS.gene92756:CDS 30.0%
!! TTTTTCAAACACACTGCTTA+GGG + chr7.4:31126115-31126134 MS.gene92756:intron 30.0%
!!! GCACAAACCTTTTTTTACAA+GGG + chr7.4:31126920-31126939 MS.gene92756:intron 30.0%
!!! TTTTTTCAAACACACTGCTT+AGG + chr7.4:31126114-31126133 MS.gene92756:intron 30.0%
AACAATAACCCTACTTCTGA+GGG + chr7.4:31125888-31125907 MS.gene92756:CDS 35.0%
AATTTCACAAACATGGGAGA+AGG + chr7.4:31126794-31126813 MS.gene92756:CDS 35.0%
CAATAGGGAATTAGTAAAGG+TGG - chr7.4:31125862-31125881 None:intergenic 35.0%
GATAATCCACCATGATTTCA+GGG - chr7.4:31127805-31127824 None:intergenic 35.0%
GCAAGATTCTACAAGTATGA+TGG - chr7.4:31127778-31127797 None:intergenic 35.0%
GTGGATCTTCTTGAATTCTT+TGG - chr7.4:31127730-31127749 None:intergenic 35.0%
TAACCTTTGACCTAAATCAC+TGG - chr7.4:31127520-31127539 None:intergenic 35.0%
TATCAGAAATATGGACACCT+AGG - chr7.4:31128018-31128037 None:intergenic 35.0%
TGAACTGAAAGAGTTTCTGA+TGG + chr7.4:31127542-31127561 MS.gene92756:intron 35.0%
TTCCAAAGAGTCTTCAGATT+TGG - chr7.4:31125931-31125950 None:intergenic 35.0%
TTGCAAGAGTTCCATTGTTA+AGG + chr7.4:31125956-31125975 MS.gene92756:CDS 35.0%
TTGTTAGTTATGGTTTGAGC+TGG + chr7.4:31126630-31126649 MS.gene92756:intron 35.0%
! AATGAAAATCTAGCTCATGG+TGG + chr7.4:31125693-31125712 MS.gene92756:CDS 35.0%
! TCCTTTTCTCTCAGTGAAAA+AGG + chr7.4:31127892-31127911 MS.gene92756:CDS 35.0%
! TTTTCTCTCAGTGAAAAAGG+AGG + chr7.4:31127895-31127914 MS.gene92756:CDS 35.0%
!! CACTTTTGATGATCCAGAAA+AGG + chr7.4:31127955-31127974 MS.gene92756:CDS 35.0%
!! TAAGTTGGTTTGCAAGTTGA+TGG - chr7.4:31125752-31125771 None:intergenic 35.0%
!! TCCTTTTTCACTGAGAGAAA+AGG - chr7.4:31127896-31127915 None:intergenic 35.0%
!!! CGCACAAACCTTTTTTTACA+AGG + chr7.4:31126919-31126938 MS.gene92756:intron 35.0%
!!! CGGTGTGCAAAATCTTTTTT+TGG - chr7.4:31126866-31126885 None:intergenic 35.0%
AAGAAACACGGAAGAGTGAT+CGG - chr7.4:31127831-31127850 None:intergenic 40.0%
ACAAGTATGATGGCCAGAAT+AGG - chr7.4:31127768-31127787 None:intergenic 40.0%
CACCAAATCTGAAGACTCTT+TGG + chr7.4:31125926-31125945 MS.gene92756:CDS 40.0%
CTTCACAAGACAACCTATTC+TGG + chr7.4:31127752-31127771 MS.gene92756:CDS 40.0%
CTTGATTCTCATGATCACCT+AGG + chr7.4:31127998-31128017 MS.gene92756:CDS 40.0%
CTTGCAAAACCCTGAAATCA+TGG + chr7.4:31127793-31127812 MS.gene92756:CDS 40.0%
GAACAATAACCCTACTTCTG+AGG + chr7.4:31125887-31125906 MS.gene92756:CDS 40.0%
GAAGAGGCTGTTACAAAAGA+AGG + chr7.4:31125982-31126001 MS.gene92756:CDS 40.0%
GAATAGGTTGTCTTGTGAAG+AGG - chr7.4:31127752-31127771 None:intergenic 40.0%
GATATTGTTCATCCACTCTC+TGG + chr7.4:31127929-31127948 MS.gene92756:CDS 40.0%
GGATAATCCACCATGATTTC+AGG - chr7.4:31127806-31127825 None:intergenic 40.0%
TCCATTGTTAAGGAACGAAG+AGG + chr7.4:31125966-31125985 MS.gene92756:CDS 40.0%
TGCACTCACAAACATGATCA+AGG + chr7.4:31127683-31127702 MS.gene92756:CDS 40.0%
TGCTTTGCAGAAACTACTAC+AGG + chr7.4:31127660-31127679 MS.gene92756:intron 40.0%
TTGAGTAGGTCCAGTGATTT+AGG + chr7.4:31127507-31127526 MS.gene92756:intron 40.0%
! GATAGTGTGACATCCTTTTC+TGG - chr7.4:31127971-31127990 None:intergenic 40.0%
!! GAGAAAAGGACAGTCTTGTT+TGG - chr7.4:31127882-31127901 None:intergenic 40.0%
!!! TTTTGCACACCGATTTTCCA+AGG + chr7.4:31126874-31126893 MS.gene92756:CDS 40.0%
AAATCAGAGCCCTCAGAAGT+AGG - chr7.4:31125900-31125919 None:intergenic 45.0%
AATCAGAGCCCTCAGAAGTA+GGG - chr7.4:31125899-31125918 None:intergenic 45.0%
CTAGCATCTTAGGGTTGAGT+AGG + chr7.4:31127493-31127512 MS.gene92756:intron 45.0%
GCAAAACCCTGAAATCATGG+TGG + chr7.4:31127796-31127815 MS.gene92756:CDS 45.0%
GCCTCTTCGTTCCTTAACAA+TGG - chr7.4:31125970-31125989 None:intergenic 45.0%
GGTCATCAGTGGAGAAAGTA+TGG + chr7.4:31126840-31126859 MS.gene92756:CDS 45.0%
GGTCCAGTGATTTAGGTCAA+AGG + chr7.4:31127514-31127533 MS.gene92756:intron 45.0%
TAGGTTGTCTTGTGAAGAGG+TGG - chr7.4:31127749-31127768 None:intergenic 45.0%
TCAAAAGTGAGTCCAGAGAG+TGG - chr7.4:31127944-31127963 None:intergenic 45.0%
! AGTGAAAAAGGAGGAGTGCA+AGG + chr7.4:31127904-31127923 MS.gene92756:CDS 45.0%
!! AAAGGACAGTCTTGTTTGGC+TGG - chr7.4:31127878-31127897 None:intergenic 45.0%
!! AGTCTTGTTTGGCTGGTGTT+GGG - chr7.4:31127871-31127890 None:intergenic 45.0%
!! ATAATTAAAAAAAAAAATTC+AGG + chr7.4:31127255-31127274 MS.gene92756:intron 5.0%
!!! TTTAAGAAAATATTTTATTT+TGG + chr7.4:31126256-31126275 MS.gene92756:intron 5.0%
AACACGGAAGAGTGATCGGT+AGG - chr7.4:31127827-31127846 None:intergenic 50.0%
CACTGATGACCATCTTCCTC+AGG - chr7.4:31126831-31126850 None:intergenic 50.0%
CTGAGGAAGATGGTCATCAG+TGG + chr7.4:31126829-31126848 MS.gene92756:CDS 50.0%
! AATCTAGCTCATGGTGGTCG+TGG + chr7.4:31125699-31125718 MS.gene92756:CDS 50.0%
!! CAGTCTTGTTTGGCTGGTGT+TGG - chr7.4:31127872-31127891 None:intergenic 50.0%
TCTGAGCTGCCTGAGGAAGA+TGG + chr7.4:31126819-31126838 MS.gene92756:CDS 55.0%
GAAGGAGTCTGAGCTGCCTG+AGG + chr7.4:31126812-31126831 MS.gene92756:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 31125687 31128075 31125687 ID=MS.gene92756
chr7.4 mRNA 31125687 31128075 31125687 ID=MS.gene92756.t1;Parent=MS.gene92756
chr7.4 exon 31125687 31126003 31125687 ID=MS.gene92756.t1.exon1;Parent=MS.gene92756.t1
chr7.4 CDS 31125687 31126003 31125687 ID=cds.MS.gene92756.t1;Parent=MS.gene92756.t1
chr7.4 exon 31126791 31126895 31126791 ID=MS.gene92756.t1.exon2;Parent=MS.gene92756.t1
chr7.4 CDS 31126791 31126895 31126791 ID=cds.MS.gene92756.t1;Parent=MS.gene92756.t1
chr7.4 exon 31127670 31128075 31127670 ID=MS.gene92756.t1.exon3;Parent=MS.gene92756.t1
chr7.4 CDS 31127670 31128075 31127670 ID=cds.MS.gene92756.t1;Parent=MS.gene92756.t1
Gene Sequence

>MS.gene92756

ATGGAAAATGAAAATCTAGCTCATGGTGGTCGTGGAAAGATAGTTGATGAGTTGTTAAGAGGCCATCAACTTGCAAACCAACTTAGAAATATTCTTAATGAAAGTGGTGATATTGATAATAATGATGGATCAACAATACCATTTGCTGAAGATCTTTTGAAGGAAGTGCTTACCACCTTTACTAATTCCCTATTGTTCTTGAACAATAACCCTACTTCTGAGGGCTCTGATTTGCAACTCACCAAATCTGAAGACTCTTTGGAAAGTAATTGCAAGAGTTCCATTGTTAAGGAACGAAGAGGCTGTTACAAAAGAAGGTAATTATTATTACTTAGTAATTTTTCTTATATTTCTTATTGTTTTATAAATCTTTGTATATGTGTGCGCATCTGAGATCCATTTAAGAGTTGACTTCTTTTAACATATATTTTTTCAAACACACTGCTTAGGGATTGAATCCCTAACTCTCCCATTATATCTATATCCACATTTCTACATCTACAATTTGTACATGATTTACTATATAGTTTTGTTTAGGAATATAGTGCTTTTTTCCTTCTTTTTTTTTTTTTAAGAAAATATTTTATTTTGGCTGATATATTTTTTTCCTCTTATTTATTGACTAATGTAATTTCACTTATATTTGAACTTTTGGATGAGGTAATGTATGCTTTGTTATTTAATTTGATTACAGACTATTAGCCAATTAATACTTTTGTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTGGTGACCATACTTTTGTTATTGTTTGTCTTTTACATATGAGTAATATTGGACCCCATCAATTATTGTTCATCATCATTGAAGGACTATGTTATATAATTAGGAACGTCCTCTTTATTAATTTGCTCGTTTCTAAAGTTTGTTAGTTATGGTTTGAGCTGGCACAGTAAAATTATTTGATTATATATATGTGTCTATACACACACACACACACACACATATATCATTTCTTGGTTGAGTTTTTTTTTTTTGTTACAATTGGAAAACTTATCAGAAAATATATACAATTCTTGTTTACAGGAAAATTTCACAAACATGGGAGAAGGAGTCTGAGCTGCCTGAGGAAGATGGTCATCAGTGGAGAAAGTATGGCCAAAAAAAGATTTTGCACACCGATTTTCCAAGGTATATTTATATGACACATTAACCGCACAAACCTTTTTTTACAAGGGAGTTTCTACTACACACTTGTAAATTGATGTGTATCGATGCACTTGTTTCCTAATTCAATAAATTAACTAACATTTTTATTAATTAAAAAAGTTATTTGTCGATTTTATATTTTAGAAAACACTATTTCATAAGAAAAAAAATATCATTTCATTGTTTATTAAGAATCATACTGAATATTTTACATTTTATAGCAAAAATAAATAAATCAGTATTCACTATTATGAGTAATAAATATTTAAAACAATAAAATTTTATTTCATTGAAACCTTTAATAAATAAGATTTAGTTATTATAATTGTAAATGATAGAAAATAATTAAAAAAAAAAATTCAGGTATTAATTTAAGGACTCAATGCACTCGAATTTTCAAGTGTAAACTAGAAATGACCTTTTTACAAGGTCATTCAATTAAATTTCACTATTTGTACAAATTGTCCGGTTAATTAATTTTCAAAACAATTAATCTAAATTATCATTAACTGTTGAGAATTGACTTGGTTTAATTTATGTATGTCTCTTATATCTGTTTATATGAAATTTATTTATTAGCTAGCATCTTAGGGTTGAGTAGGTCCAGTGATTTAGGTCAAAGGTTAATTGAACTGAAAGAGTTTCTGATGGATAAATAGACATGACAACTAATTAATATTTGTTAATACAAACAAAAATCCTCTACTTCTTACTAATCAATATCACTAAATGAATATGTACTTATGTGCTTTGCAGAAACTACTACAGGTGCACTCACAAACATGATCAAGGTTGCAAAGCAACAAAACAAGTCCAAAGAATTCAAGAAGATCCACCTCTTCACAAGACAACCTATTCTGGCCATCATACTTGTAGAATCTTGCAAAACCCTGAAATCATGGTGGATTATCCTACCGATCACTCTTCCGTGTTTCTTAGTTTTGACAACTCTTTCCCAACACCAGCCAAACAAGACTGTCCTTTTCTCTCAGTGAAAAAGGAGGAGTGCAAGGAAGATATTGTTCATCCACTCTCTGGACTCACTTTTGATGATCCAGAAAAGGATGTCACACTATCATCAACACTTGATTCTCATGATCACCTAGGTGTCCATATTTCTGATATCATGTATGATGATGTCCTTAATTGGCCTCTTTCTTAA
Protein sequence

>MS.gene92756.t1

MENENLAHGGRGKIVDELLRGHQLANQLRNILNESGDIDNNDGSTIPFAEDLLKEVLTTFTNSLLFLNNNPTSEGSDLQLTKSEDSLESNCKSSIVKERRGCYKRRKISQTWEKESELPEEDGHQWRKYGQKKILHTDFPRNYYRCTHKHDQGCKATKQVQRIQEDPPLHKTTYSGHHTCRILQNPEIMVDYPTDHSSVFLSFDNSFPTPAKQDCPFLSVKKEECKEDIVHPLSGLTFDDPEKDVTLSSTLDSHDHLGVHISDIMYDDVLNWPLS