Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93502.t1 | XP_003598997.1 | 88.1 | 590 | 64 | 2 | 3 | 592 | 37 | 620 | 2.50E-297 | 1030.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93502.t1 | Q9FNR3 | 42.7 | 588 | 320 | 6 | 12 | 591 | 61 | 639 | 2.5e-120 | 434.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93502.t1 | G7IZB2 | 88.1 | 590 | 64 | 2 | 3 | 592 | 37 | 620 | 1.8e-297 | 1030.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049993 | MS.gene93502 | 0.8076 | 4.67E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene93502 | 0.828469 | 8.83E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene93502 | MS.gene021898 | PPI |
| MS.gene93502 | MS.gene069412 | PPI |
| MS.gene93502 | MS.gene44621 | PPI |
| MS.gene93502 | MS.gene91620 | PPI |
| MS.gene069415 | MS.gene93502 | PPI |
| MS.gene021896 | MS.gene93502 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93502.t1 | MTR_3g025900 | 88.136 | 590 | 64 | 2 | 3 | 592 | 37 | 620 | 0.0 | 1047 |
| MS.gene93502.t1 | MTR_7g013770 | 44.048 | 588 | 308 | 6 | 22 | 591 | 93 | 677 | 7.65e-168 | 493 |
| MS.gene93502.t1 | MTR_4g103540 | 38.889 | 540 | 301 | 9 | 73 | 591 | 160 | 691 | 3.26e-115 | 358 |
| MS.gene93502.t1 | MTR_8g021330 | 35.355 | 577 | 327 | 11 | 45 | 586 | 46 | 611 | 1.84e-101 | 320 |
| MS.gene93502.t1 | MTR_7g026630 | 35.080 | 439 | 271 | 6 | 165 | 592 | 224 | 659 | 2.39e-84 | 276 |
| MS.gene93502.t1 | MTR_1g090620 | 29.982 | 567 | 335 | 11 | 45 | 578 | 102 | 639 | 4.95e-83 | 273 |
| MS.gene93502.t1 | MTR_5g073450 | 31.609 | 522 | 335 | 10 | 76 | 584 | 125 | 637 | 2.09e-81 | 268 |
| MS.gene93502.t1 | MTR_1g057560 | 31.286 | 521 | 317 | 9 | 75 | 578 | 127 | 623 | 2.19e-81 | 268 |
| MS.gene93502.t1 | MTR_3g031130 | 33.860 | 443 | 276 | 5 | 150 | 584 | 190 | 623 | 1.10e-77 | 258 |
| MS.gene93502.t1 | MTR_6g033310 | 30.593 | 523 | 333 | 6 | 75 | 582 | 220 | 727 | 9.46e-77 | 258 |
| MS.gene93502.t1 | MTR_1g067460 | 28.180 | 511 | 344 | 9 | 79 | 578 | 101 | 599 | 7.02e-63 | 218 |
| MS.gene93502.t1 | MTR_5g073460 | 30.512 | 449 | 299 | 5 | 145 | 584 | 252 | 696 | 7.68e-63 | 220 |
| MS.gene93502.t1 | MTR_2g096230 | 29.444 | 540 | 351 | 8 | 42 | 579 | 69 | 580 | 1.39e-62 | 217 |
| MS.gene93502.t1 | MTR_1g067480 | 28.298 | 523 | 331 | 13 | 79 | 580 | 103 | 602 | 1.06e-59 | 209 |
| MS.gene93502.t1 | MTR_1g117090 | 28.986 | 552 | 336 | 10 | 75 | 578 | 123 | 666 | 2.16e-57 | 204 |
| MS.gene93502.t1 | MTR_4g062330 | 28.016 | 514 | 346 | 9 | 78 | 579 | 102 | 603 | 6.20e-56 | 199 |
| MS.gene93502.t1 | MTR_5g073620 | 26.419 | 458 | 290 | 9 | 145 | 592 | 281 | 701 | 1.02e-41 | 162 |
| MS.gene93502.t1 | MTR_5g073620 | 28.000 | 175 | 119 | 3 | 416 | 584 | 899 | 1072 | 7.36e-11 | 65.9 |
| MS.gene93502.t1 | MTR_1g009620 | 26.804 | 388 | 254 | 9 | 219 | 591 | 290 | 662 | 5.17e-33 | 134 |
| MS.gene93502.t1 | MTR_5g074130 | 27.045 | 440 | 292 | 11 | 151 | 578 | 251 | 673 | 2.40e-32 | 133 |
| MS.gene93502.t1 | MTR_5g073480 | 27.243 | 301 | 207 | 4 | 129 | 429 | 246 | 534 | 4.67e-29 | 122 |
| MS.gene93502.t1 | MTR_4g008260 | 26.850 | 473 | 299 | 16 | 136 | 587 | 200 | 646 | 2.03e-28 | 120 |
| MS.gene93502.t1 | MTR_3g464010 | 25.513 | 439 | 294 | 12 | 152 | 578 | 249 | 666 | 1.41e-27 | 118 |
| MS.gene93502.t1 | MTR_1g017910 | 24.728 | 368 | 253 | 9 | 205 | 552 | 297 | 660 | 1.33e-22 | 102 |
| MS.gene93502.t1 | MTR_5g073920 | 25.057 | 435 | 297 | 13 | 151 | 578 | 245 | 657 | 1.31e-21 | 99.8 |
| MS.gene93502.t1 | MTR_5g093530 | 27.586 | 319 | 195 | 9 | 237 | 553 | 258 | 542 | 4.05e-21 | 97.8 |
| MS.gene93502.t1 | MTR_5g073770 | 29.255 | 188 | 131 | 1 | 145 | 330 | 194 | 381 | 4.29e-21 | 95.9 |
| MS.gene93502.t1 | MTR_0229s0040 | 30.890 | 191 | 115 | 4 | 405 | 582 | 24 | 210 | 8.86e-20 | 89.4 |
| MS.gene93502.t1 | MTR_5g073900 | 23.529 | 391 | 239 | 12 | 169 | 550 | 1 | 340 | 4.25e-14 | 74.3 |
| MS.gene93502.t1 | MTR_5g073780 | 29.787 | 141 | 95 | 2 | 416 | 553 | 54 | 193 | 1.82e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93502.t1 | AT5G61010 | 42.687 | 588 | 320 | 6 | 12 | 591 | 61 | 639 | 7.87e-153 | 454 |
| MS.gene93502.t1 | AT5G61010 | 42.687 | 588 | 320 | 6 | 12 | 591 | 61 | 639 | 7.87e-153 | 454 |
| MS.gene93502.t1 | AT3G29400 | 39.635 | 603 | 319 | 12 | 22 | 591 | 68 | 658 | 1.98e-133 | 404 |
| MS.gene93502.t1 | AT5G50380 | 38.210 | 581 | 307 | 10 | 42 | 591 | 123 | 682 | 2.35e-124 | 382 |
| MS.gene93502.t1 | AT3G14090 | 35.660 | 530 | 308 | 7 | 78 | 578 | 86 | 611 | 1.60e-103 | 326 |
| MS.gene93502.t1 | AT1G72470 | 33.956 | 589 | 325 | 9 | 45 | 586 | 56 | 627 | 5.63e-98 | 312 |
| MS.gene93502.t1 | AT1G54090 | 32.937 | 589 | 328 | 9 | 45 | 586 | 49 | 617 | 8.42e-95 | 303 |
| MS.gene93502.t1 | AT5G03540 | 32.468 | 539 | 310 | 9 | 63 | 578 | 6 | 513 | 7.78e-88 | 282 |
| MS.gene93502.t1 | AT5G03540 | 31.472 | 591 | 344 | 13 | 13 | 578 | 74 | 628 | 2.65e-87 | 284 |
| MS.gene93502.t1 | AT5G03540 | 30.643 | 607 | 354 | 13 | 13 | 578 | 74 | 654 | 2.43e-84 | 277 |
| MS.gene93502.t1 | AT5G52340 | 30.943 | 530 | 323 | 9 | 63 | 578 | 121 | 621 | 8.19e-78 | 259 |
| MS.gene93502.t1 | AT5G58430 | 32.574 | 439 | 273 | 7 | 151 | 581 | 196 | 619 | 3.67e-72 | 243 |
| MS.gene93502.t1 | AT1G07000 | 30.254 | 552 | 335 | 12 | 40 | 581 | 86 | 597 | 8.43e-70 | 236 |
| MS.gene93502.t1 | AT5G13150 | 30.309 | 485 | 310 | 7 | 121 | 585 | 173 | 649 | 4.60e-69 | 236 |
| MS.gene93502.t1 | AT2G28640 | 30.233 | 516 | 326 | 9 | 76 | 584 | 94 | 582 | 3.92e-68 | 232 |
| MS.gene93502.t1 | AT1G07725 | 28.957 | 556 | 363 | 10 | 45 | 592 | 72 | 603 | 1.31e-67 | 231 |
| MS.gene93502.t1 | AT2G39380 | 28.983 | 521 | 338 | 7 | 79 | 582 | 107 | 612 | 3.07e-67 | 231 |
| MS.gene93502.t1 | AT5G59730 | 29.889 | 542 | 349 | 9 | 57 | 581 | 72 | 599 | 4.71e-66 | 227 |
| MS.gene93502.t1 | AT5G13990 | 33.480 | 454 | 279 | 9 | 152 | 592 | 250 | 693 | 5.19e-66 | 228 |
| MS.gene93502.t1 | AT5G59730 | 29.889 | 542 | 349 | 9 | 57 | 581 | 72 | 599 | 6.27e-66 | 227 |
| MS.gene93502.t1 | AT3G09520 | 28.597 | 549 | 339 | 11 | 59 | 580 | 84 | 606 | 1.77e-65 | 226 |
| MS.gene93502.t1 | AT3G55150 | 27.972 | 572 | 370 | 11 | 29 | 582 | 65 | 612 | 1.43e-60 | 213 |
| MS.gene93502.t1 | AT5G52350 | 28.056 | 499 | 320 | 8 | 96 | 579 | 102 | 576 | 2.07e-58 | 206 |
| MS.gene93502.t1 | AT3G09530 | 27.440 | 543 | 350 | 14 | 59 | 578 | 79 | 600 | 1.15e-51 | 188 |
| MS.gene93502.t1 | AT2G28650 | 30.166 | 421 | 272 | 7 | 162 | 578 | 152 | 554 | 1.51e-51 | 186 |
| MS.gene93502.t1 | AT4G31540 | 25.835 | 449 | 289 | 12 | 157 | 582 | 231 | 658 | 9.46e-33 | 134 |
| MS.gene93502.t1 | AT1G51640 | 24.944 | 449 | 291 | 11 | 159 | 579 | 196 | 626 | 2.26e-22 | 102 |
Find 78 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAATTTCTTTGGAGATTTC+TGG | 0.100464 | 3.4:-18145993 | MS.gene93502:CDS |
| TGATCTACAATGTTATATTT+TGG | 0.148649 | 3.4:-18145653 | MS.gene93502:CDS |
| AAAACCCTATGTAATTTCTT+TGG | 0.238723 | 3.4:-18146003 | MS.gene93502:CDS |
| ATCAAGGCACTTGTTGAATA+TGG | 0.262018 | 3.4:-18146267 | MS.gene93502:CDS |
| CGGCCTCACCAAAATTTAAA+AGG | 0.270456 | 3.4:+18146559 | None:intergenic |
| TTTGTTGCAAAGTTTGAGTT+AGG | 0.281815 | 3.4:+18147195 | None:intergenic |
| CATCGAAAATGTGCTTAAAT+TGG | 0.282679 | 3.4:-18146748 | MS.gene93502:CDS |
| TCTTCGCGAAGTTCTTTATC+AGG | 0.287927 | 3.4:+18145778 | None:intergenic |
| CCAGGAAAACATTTATTTGA+TGG | 0.305526 | 3.4:+18146330 | None:intergenic |
| CATCGACAAGAAGAAGATTA+AGG | 0.306338 | 3.4:+18146238 | None:intergenic |
| TGAGAATGGTGCAAAGATTT+TGG | 0.309875 | 3.4:+18145613 | None:intergenic |
| CACAAACTTCTAAGAAGCTT+TGG | 0.327792 | 3.4:-18146405 | MS.gene93502:CDS |
| TGAAGATAAGGTAATGAGTT+TGG | 0.328772 | 3.4:-18147279 | MS.gene93502:CDS |
| GCAAGATAAAGAAATGGATT+TGG | 0.330593 | 3.4:-18146707 | MS.gene93502:CDS |
| TTTCATCAATTGAACACAAT+TGG | 0.334191 | 3.4:+18147348 | None:intergenic |
| CAAAAGTTTGATTCTGTGAA+TGG | 0.352739 | 3.4:-18147176 | MS.gene93502:CDS |
| ATACACAATATCAACTCTAT+TGG | 0.354741 | 3.4:+18147016 | None:intergenic |
| CAAGATAAAGAAATGGATTT+GGG | 0.378488 | 3.4:-18146706 | MS.gene93502:CDS |
| GTTCACTGGCTTGCAACTTA+AGG | 0.378602 | 3.4:-18146149 | MS.gene93502:CDS |
| TCGCGAAGATCTACAAATAT+CGG | 0.379075 | 3.4:-18145764 | MS.gene93502:CDS |
| CTCTGAATTATCTCGAGGTT+CGG | 0.392003 | 3.4:-18146589 | MS.gene93502:CDS |
| TACTTTCTCATGTTGTTCAC+TGG | 0.401142 | 3.4:-18146163 | MS.gene93502:CDS |
| AGCAAGCAGTACTATAGATT+TGG | 0.401193 | 3.4:-18146919 | MS.gene93502:CDS |
| ATTGTGTATGATGGATCATT+TGG | 0.401464 | 3.4:-18147002 | MS.gene93502:CDS |
| CATTCATTACATGGTTCAAA+AGG | 0.407674 | 3.4:-18146037 | MS.gene93502:CDS |
| TTGTCATCATTGCTCTCCGC+TGG | 0.422115 | 3.4:+18146201 | None:intergenic |
| TTCACTTTCTATGTTGAGAA+TGG | 0.431758 | 3.4:+18145599 | None:intergenic |
| TTCTGGCTTCGCCGACATGC+TGG | 0.446173 | 3.4:-18145976 | MS.gene93502:CDS |
| AAGCAGATTCTCGGAGACTT+TGG | 0.454981 | 3.4:-18146633 | MS.gene93502:CDS |
| ATCTATAGTACTGCTTGCTT+CGG | 0.457349 | 3.4:+18146923 | None:intergenic |
| GCTTAAATGTGTTGAAGATA+AGG | 0.460156 | 3.4:-18147291 | MS.gene93502:CDS |
| AGAGAAACAAAACTGATAAA+CGG | 0.460482 | 3.4:+18146608 | None:intergenic |
| CAATTGTGTAAGCAGATTCT+CGG | 0.463987 | 3.4:-18146642 | MS.gene93502:CDS |
| TGAGAAGTGGATTAAGTATA+CGG | 0.464454 | 3.4:-18145680 | MS.gene93502:CDS |
| GTGTTCAATTGATGAAAGAA+AGG | 0.466489 | 3.4:-18147342 | MS.gene93502:CDS |
| GATTCGAAAGACATATAATC+AGG | 0.468885 | 3.4:+18147038 | None:intergenic |
| TGCTTCTAGAAAAGAAGCCT+TGG | 0.469826 | 3.4:-18146808 | MS.gene93502:CDS |
| TGAATCGCAAGATAAAGAAA+TGG | 0.475005 | 3.4:-18146713 | MS.gene93502:CDS |
| ATCATTGCTCTCCGCTGGAT+CGG | 0.478264 | 3.4:+18146206 | None:intergenic |
| TTGTTTACTTGACATGTATG+AGG | 0.480736 | 3.4:-18146502 | MS.gene93502:CDS |
| TTTGGTGAGGCCGTAACAAT+GGG | 0.483386 | 3.4:-18146549 | MS.gene93502:CDS |
| ATCGTTCAGACGTATCTTGT+CGG | 0.483997 | 3.4:-18146672 | MS.gene93502:CDS |
| GTTTGCTTCAAATTACCATC+AGG | 0.485110 | 3.4:-18146850 | MS.gene93502:CDS |
| CCGGTATAACTTCGGTAAGC+AGG | 0.491544 | 3.4:+18145724 | None:intergenic |
| GTCAAGGCTTGAGGATGAGT+TGG | 0.492679 | 3.4:-18147096 | MS.gene93502:CDS |
| GAAGTATACAAAACACAGAC+AGG | 0.498418 | 3.4:-18145811 | MS.gene93502:CDS |
| AGCAACATCAGTGTATAACT+TGG | 0.499600 | 3.4:+18146086 | None:intergenic |
| GAATGGAAATTTGAAGCATA+AGG | 0.507338 | 3.4:-18147159 | MS.gene93502:CDS |
| CCTGCTTACCGAAGTTATAC+CGG | 0.507813 | 3.4:-18145724 | MS.gene93502:CDS |
| TTGTTGCAAAGTTTGAGTTA+GGG | 0.513478 | 3.4:+18147196 | None:intergenic |
| CGTCTAACATTGATGAGAAG+TGG | 0.516919 | 3.4:-18145693 | MS.gene93502:CDS |
| AGAGTTGATATTGTGTATGA+TGG | 0.520793 | 3.4:-18147011 | MS.gene93502:CDS |
| GATGAATAACATTCATTACA+TGG | 0.527155 | 3.4:-18146046 | MS.gene93502:CDS |
| AATCTCCAAAGAAATTACAT+AGG | 0.528067 | 3.4:+18145998 | None:intergenic |
| TCATGACATATCTTGTAAGA+TGG | 0.530309 | 3.4:+18146295 | None:intergenic |
| TTGAGATCTTCAAGTACAGA+AGG | 0.534800 | 3.4:+18146891 | None:intergenic |
| ATCTCCAAAGAAATTACATA+GGG | 0.535733 | 3.4:+18145999 | None:intergenic |
| ATGAGTTTGGAGACTAATCA+TGG | 0.537906 | 3.4:-18147266 | MS.gene93502:CDS |
| TGGATCATTTGGTTCAATTG+AGG | 0.538106 | 3.4:-18146991 | MS.gene93502:CDS |
| TTTGTATACTTCACCAAAAG+CGG | 0.555253 | 3.4:+18145822 | None:intergenic |
| GAAGCTATGAGAAGGTGACT+TGG | 0.564885 | 3.4:-18145933 | MS.gene93502:CDS |
| AATGTTAGACGAGTTTCTAC+CGG | 0.566162 | 3.4:+18145705 | None:intergenic |
| TAGTACTGCTTGCTTCGGAT+CGG | 0.574273 | 3.4:+18146928 | None:intergenic |
| AGTTGTTATGTCAAGGCTTG+AGG | 0.587807 | 3.4:-18147105 | MS.gene93502:CDS |
| TGTTTCTCTGAATTATCTCG+AGG | 0.589153 | 3.4:-18146594 | MS.gene93502:CDS |
| CGTGTGTGCTCCCATTGTTA+CGG | 0.593909 | 3.4:+18146539 | None:intergenic |
| AGACATGACAAAACTCCTGA+TGG | 0.596832 | 3.4:+18146835 | None:intergenic |
| AGTACTTTCTGTGTTTAGTG+AGG | 0.603239 | 3.4:-18145905 | MS.gene93502:CDS |
| AATGAGAAAGTACTCATCCA+AGG | 0.603868 | 3.4:+18146791 | None:intergenic |
| AGATGGTGAACACCTCCACC+AGG | 0.608901 | 3.4:+18146312 | None:intergenic |
| AAAATGTGCTTAAATTGGAG+TGG | 0.609715 | 3.4:-18146743 | MS.gene93502:CDS |
| AGTTTCTACCGGTATAACTT+CGG | 0.613307 | 3.4:+18145716 | None:intergenic |
| TTATGCTAGAAGCTATGAGA+AGG | 0.634466 | 3.4:-18145941 | MS.gene93502:CDS |
| ATATGTCATGAATTACATCA+AGG | 0.636314 | 3.4:-18146283 | MS.gene93502:CDS |
| GGAAAGTTTATCGAATTGTG+TGG | 0.641491 | 3.4:-18145884 | MS.gene93502:CDS |
| GCTGAAACATGCCAGCATGT+CGG | 0.657685 | 3.4:+18145965 | None:intergenic |
| TATACAAAACACAGACAGGG+TGG | 0.686135 | 3.4:-18145807 | MS.gene93502:CDS |
| AAGTATACAAAACACAGACA+GGG | 0.732452 | 3.4:-18145810 | MS.gene93502:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTGAGTATTTAAAAATTGT+TGG | - | chr3.4:18145726-18145745 | MS.gene93502:CDS | 20.0% |
| !!! | AAGTAAACAAAACAGTTTTT+CGG | + | chr3.4:18146444-18146463 | None:intergenic | 20.0% |
| !!! | TGATCTACAATGTTATATTT+TGG | - | chr3.4:18147303-18147322 | MS.gene93502:CDS | 20.0% |
| ! | AAAACCCTATGTAATTTCTT+TGG | - | chr3.4:18146953-18146972 | MS.gene93502:CDS | 25.0% |
| ! | AATCTCCAAAGAAATTACAT+AGG | + | chr3.4:18146961-18146980 | None:intergenic | 25.0% |
| ! | AGAGAAACAAAACTGATAAA+CGG | + | chr3.4:18146351-18146370 | None:intergenic | 25.0% |
| ! | ATACACAATATCAACTCTAT+TGG | + | chr3.4:18145943-18145962 | None:intergenic | 25.0% |
| ! | ATATGTCATGAATTACATCA+AGG | - | chr3.4:18146673-18146692 | MS.gene93502:CDS | 25.0% |
| ! | ATCTCCAAAGAAATTACATA+GGG | + | chr3.4:18146960-18146979 | None:intergenic | 25.0% |
| ! | GATGAATAACATTCATTACA+TGG | - | chr3.4:18146910-18146929 | MS.gene93502:CDS | 25.0% |
| ! | TTTCATCAATTGAACACAAT+TGG | + | chr3.4:18145611-18145630 | None:intergenic | 25.0% |
| !! | AGTAAACAAAACAGTTTTTC+GGG | + | chr3.4:18146443-18146462 | None:intergenic | 25.0% |
| !! | ATGAGAAAGTAGAATTTTCA+TGG | + | chr3.4:18146784-18146803 | None:intergenic | 25.0% |
| !! | CAAGATAAAGAAATGGATTT+GGG | - | chr3.4:18146250-18146269 | MS.gene93502:CDS | 25.0% |
| !! | GTTTTGTGCCTTTTAAATTT+TGG | - | chr3.4:18146389-18146408 | MS.gene93502:CDS | 25.0% |
| AAAATGTGCTTAAATTGGAG+TGG | - | chr3.4:18146213-18146232 | MS.gene93502:CDS | 30.0% | |
| AAGTATACAAAACACAGACA+GGG | - | chr3.4:18147146-18147165 | MS.gene93502:CDS | 30.0% | |
| CAAAAGTTTGATTCTGTGAA+TGG | - | chr3.4:18145780-18145799 | MS.gene93502:CDS | 30.0% | |
| CATCGAAAATGTGCTTAAAT+TGG | - | chr3.4:18146208-18146227 | MS.gene93502:CDS | 30.0% | |
| CATTCATTACATGGTTCAAA+AGG | - | chr3.4:18146919-18146938 | MS.gene93502:CDS | 30.0% | |
| CCAGGAAAACATTTATTTGA+TGG | + | chr3.4:18146629-18146648 | None:intergenic | 30.0% | |
| GATTCGAAAGACATATAATC+AGG | + | chr3.4:18145921-18145940 | None:intergenic | 30.0% | |
| GCTTAAATGTGTTGAAGATA+AGG | - | chr3.4:18145665-18145684 | MS.gene93502:CDS | 30.0% | |
| GTGTTCAATTGATGAAAGAA+AGG | - | chr3.4:18145614-18145633 | MS.gene93502:CDS | 30.0% | |
| TCATGACATATCTTGTAAGA+TGG | + | chr3.4:18146664-18146683 | None:intergenic | 30.0% | |
| TGAAGATAAGGTAATGAGTT+TGG | - | chr3.4:18145677-18145696 | MS.gene93502:CDS | 30.0% | |
| TGAATCGCAAGATAAAGAAA+TGG | - | chr3.4:18146243-18146262 | MS.gene93502:CDS | 30.0% | |
| TGAGGATGAAAAAATCAATG+AGG | - | chr3.4:18145983-18146002 | MS.gene93502:CDS | 30.0% | |
| TTGTTTACTTGACATGTATG+AGG | - | chr3.4:18146454-18146473 | MS.gene93502:CDS | 30.0% | |
| TTTGTATACTTCACCAAAAG+CGG | + | chr3.4:18147137-18147156 | None:intergenic | 30.0% | |
| ! | CCATCAAATAAATGTTTTCC+TGG | - | chr3.4:18146626-18146645 | MS.gene93502:CDS | 30.0% |
| ! | GAATGGAAATTTGAAGCATA+AGG | - | chr3.4:18145797-18145816 | MS.gene93502:CDS | 30.0% |
| ! | GCAAGATAAAGAAATGGATT+TGG | - | chr3.4:18146249-18146268 | MS.gene93502:CDS | 30.0% |
| ! | GTAATTTCTTTGGAGATTTC+TGG | - | chr3.4:18146963-18146982 | MS.gene93502:CDS | 30.0% |
| ! | TCAAATAAATGTTTTCCTGG+TGG | - | chr3.4:18146629-18146648 | MS.gene93502:CDS | 30.0% |
| ! | TTGTTGCAAAGTTTGAGTTA+GGG | + | chr3.4:18145763-18145782 | None:intergenic | 30.0% |
| ! | TTTGTTGCAAAGTTTGAGTT+AGG | + | chr3.4:18145764-18145783 | None:intergenic | 30.0% |
| ! | TTTTGCAAGTTGTTATGTCA+AGG | - | chr3.4:18145844-18145863 | MS.gene93502:CDS | 30.0% |
| !! | AAAGATTTTAGTACCGCTTT+TGG | - | chr3.4:18147121-18147140 | MS.gene93502:CDS | 30.0% |
| !! | AGAGTTGATATTGTGTATGA+TGG | - | chr3.4:18145945-18145964 | MS.gene93502:CDS | 30.0% |
| !! | ATTGTGTATGATGGATCATT+TGG | - | chr3.4:18145954-18145973 | MS.gene93502:CDS | 30.0% |
| !! | TGAGAAGTGGATTAAGTATA+CGG | - | chr3.4:18147276-18147295 | MS.gene93502:CDS | 30.0% |
| AATGTTAGACGAGTTTCTAC+CGG | + | chr3.4:18147254-18147273 | None:intergenic | 35.0% | |
| AGCAACATCAGTGTATAACT+TGG | + | chr3.4:18146873-18146892 | None:intergenic | 35.0% | |
| AGCAAGCAGTACTATAGATT+TGG | - | chr3.4:18146037-18146056 | MS.gene93502:CDS | 35.0% | |
| AGTACTTTCTGTGTTTAGTG+AGG | - | chr3.4:18147051-18147070 | MS.gene93502:CDS | 35.0% | |
| AGTTTCTACCGGTATAACTT+CGG | + | chr3.4:18147243-18147262 | None:intergenic | 35.0% | |
| ATCTATAGTACTGCTTGCTT+CGG | + | chr3.4:18146036-18146055 | None:intergenic | 35.0% | |
| ATGAGTTTGGAGACTAATCA+TGG | - | chr3.4:18145690-18145709 | MS.gene93502:CDS | 35.0% | |
| CAATTGTGTAAGCAGATTCT+CGG | - | chr3.4:18146314-18146333 | MS.gene93502:CDS | 35.0% | |
| CATCGACAAGAAGAAGATTA+AGG | + | chr3.4:18146721-18146740 | None:intergenic | 35.0% | |
| GAAGTATACAAAACACAGAC+AGG | - | chr3.4:18147145-18147164 | MS.gene93502:CDS | 35.0% | |
| GGAAAGTTTATCGAATTGTG+TGG | - | chr3.4:18147072-18147091 | MS.gene93502:CDS | 35.0% | |
| GTTTGCTTCAAATTACCATC+AGG | - | chr3.4:18146106-18146125 | MS.gene93502:CDS | 35.0% | |
| TACTTTCTCATGTTGTTCAC+TGG | - | chr3.4:18146793-18146812 | MS.gene93502:CDS | 35.0% | |
| TCGCGAAGATCTACAAATAT+CGG | - | chr3.4:18147192-18147211 | MS.gene93502:CDS | 35.0% | |
| TGTTTCTCTGAATTATCTCG+AGG | - | chr3.4:18146362-18146381 | MS.gene93502:CDS | 35.0% | |
| TTATGCTAGAAGCTATGAGA+AGG | - | chr3.4:18147015-18147034 | MS.gene93502:CDS | 35.0% | |
| TTGAGATCTTCAAGTACAGA+AGG | + | chr3.4:18146068-18146087 | None:intergenic | 35.0% | |
| ! | AATAAATGTTTTCCTGGTGG+AGG | - | chr3.4:18146632-18146651 | MS.gene93502:CDS | 35.0% |
| ! | ATCAAGGCACTTGTTGAATA+TGG | - | chr3.4:18146689-18146708 | MS.gene93502:CDS | 35.0% |
| ! | CACAAACTTCTAAGAAGCTT+TGG | - | chr3.4:18146551-18146570 | MS.gene93502:CDS | 35.0% |
| ! | GGTTTTTGAACTTTTAGCAG+TGG | - | chr3.4:18146475-18146494 | MS.gene93502:CDS | 35.0% |
| ! | TGAGAATGGTGCAAAGATTT+TGG | + | chr3.4:18147346-18147365 | None:intergenic | 35.0% |
| ! | TGGATCATTTGGTTCAATTG+AGG | - | chr3.4:18145965-18145984 | MS.gene93502:CDS | 35.0% |
| !! | AAAAAATCAATGAGGCATCG+CGG | - | chr3.4:18145991-18146010 | MS.gene93502:CDS | 35.0% |
| !! | AATGAGAAAGTACTCATCCA+AGG | + | chr3.4:18146168-18146187 | None:intergenic | 35.0% |
| !! | GAAGTTGATTCTTTTGTCAG+AGG | - | chr3.4:18146521-18146540 | MS.gene93502:CDS | 35.0% |
| !! | GTGCCTTTTAAATTTTGGTG+AGG | - | chr3.4:18146394-18146413 | MS.gene93502:CDS | 35.0% |
| AGACATGACAAAACTCCTGA+TGG | + | chr3.4:18146124-18146143 | None:intergenic | 40.0% | |
| AGTTGTTATGTCAAGGCTTG+AGG | - | chr3.4:18145851-18145870 | MS.gene93502:CDS | 40.0% | |
| ATCGTTCAGACGTATCTTGT+CGG | - | chr3.4:18146284-18146303 | MS.gene93502:CDS | 40.0% | |
| CGGCCTCACCAAAATTTAAA+AGG | + | chr3.4:18146400-18146419 | None:intergenic | 40.0% | |
| CGTCTAACATTGATGAGAAG+TGG | - | chr3.4:18147263-18147282 | MS.gene93502:CDS | 40.0% | |
| CTCTGAATTATCTCGAGGTT+CGG | - | chr3.4:18146367-18146386 | MS.gene93502:CDS | 40.0% | |
| TATACAAAACACAGACAGGG+TGG | - | chr3.4:18147149-18147168 | MS.gene93502:CDS | 40.0% | |
| TCTTCGCGAAGTTCTTTATC+AGG | + | chr3.4:18147181-18147200 | None:intergenic | 40.0% | |
| ! | TGCTTCTAGAAAAGAAGCCT+TGG | - | chr3.4:18146148-18146167 | MS.gene93502:CDS | 40.0% |
| !! | TGAAATTTTGACCGATCCAG+CGG | - | chr3.4:18146739-18146758 | MS.gene93502:CDS | 40.0% |
| AAGCAGATTCTCGGAGACTT+TGG | - | chr3.4:18146323-18146342 | MS.gene93502:CDS | 45.0% | |
| CCTGCTTACCGAAGTTATAC+CGG | - | chr3.4:18147232-18147251 | MS.gene93502:CDS | 45.0% | |
| GAAGCTATGAGAAGGTGACT+TGG | - | chr3.4:18147023-18147042 | MS.gene93502:CDS | 45.0% | |
| TAGTACTGCTTGCTTCGGAT+CGG | + | chr3.4:18146031-18146050 | None:intergenic | 45.0% | |
| TTTGGTGAGGCCGTAACAAT+GGG | - | chr3.4:18146407-18146426 | MS.gene93502:CDS | 45.0% | |
| ! | TTTTGGTGAGGCCGTAACAA+TGG | - | chr3.4:18146406-18146425 | MS.gene93502:CDS | 45.0% |
| !! | GTTCACTGGCTTGCAACTTA+AGG | - | chr3.4:18146807-18146826 | MS.gene93502:CDS | 45.0% |
| ATCATTGCTCTCCGCTGGAT+CGG | + | chr3.4:18146753-18146772 | None:intergenic | 50.0% | |
| CCGGTATAACTTCGGTAAGC+AGG | + | chr3.4:18147235-18147254 | None:intergenic | 50.0% | |
| CGTGTGTGCTCCCATTGTTA+CGG | + | chr3.4:18146420-18146439 | None:intergenic | 50.0% | |
| GCTGAAACATGCCAGCATGT+CGG | + | chr3.4:18146994-18147013 | None:intergenic | 50.0% | |
| GTCAAGGCTTGAGGATGAGT+TGG | - | chr3.4:18145860-18145879 | MS.gene93502:CDS | 50.0% | |
| TTGTCATCATTGCTCTCCGC+TGG | + | chr3.4:18146758-18146777 | None:intergenic | 50.0% | |
| AGATGGTGAACACCTCCACC+AGG | + | chr3.4:18146647-18146666 | None:intergenic | 55.0% | |
| !! | TTCTGGCTTCGCCGACATGC+TGG | - | chr3.4:18146980-18146999 | MS.gene93502:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 18145600 | 18147378 | 18145600 | ID=MS.gene93502 |
| chr3.4 | mRNA | 18145600 | 18147378 | 18145600 | ID=MS.gene93502.t1;Parent=MS.gene93502 |
| chr3.4 | exon | 18145600 | 18147378 | 18145600 | ID=MS.gene93502.t1.exon1;Parent=MS.gene93502.t1 |
| chr3.4 | CDS | 18145600 | 18147378 | 18145600 | ID=cds.MS.gene93502.t1;Parent=MS.gene93502.t1 |
| Gene Sequence |
| Protein sequence |
