Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93507.t1 | AES69260.2 | 94.8 | 366 | 18 | 1 | 1 | 365 | 2 | 367 | 1.80E-192 | 681.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93507.t1 | Q9FME3 | 46.9 | 262 | 98 | 11 | 6 | 251 | 8 | 244 | 3.6e-43 | 177.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93507.t1 | G7IZC4 | 94.8 | 366 | 18 | 1 | 1 | 365 | 2 | 367 | 1.3e-192 | 681.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene93507.t1 | TF | TCP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050499 | MS.gene93507 | 0.814212 | 1.73E-51 | -1.69E-46 |
| MS.gene050502 | MS.gene93507 | 0.817287 | 3.57E-52 | -1.69E-46 |
| MS.gene051509 | MS.gene93507 | 0.802506 | 5.43E-49 | -1.69E-46 |
| MS.gene051874 | MS.gene93507 | 0.803633 | 3.18E-49 | -1.69E-46 |
| MS.gene051941 | MS.gene93507 | 0.801878 | 7.31E-49 | -1.69E-46 |
| MS.gene053505 | MS.gene93507 | 0.800346 | 1.50E-48 | -1.69E-46 |
| MS.gene055909 | MS.gene93507 | 0.814424 | 1.55E-51 | -1.69E-46 |
| MS.gene055911 | MS.gene93507 | 0.817675 | 2.92E-52 | -1.69E-46 |
| MS.gene056422 | MS.gene93507 | 0.829882 | 4.01E-55 | -1.69E-46 |
| MS.gene057019 | MS.gene93507 | 0.812917 | 3.33E-51 | -1.69E-46 |
| MS.gene059674 | MS.gene93507 | 0.809784 | 1.59E-50 | -1.69E-46 |
| MS.gene059680 | MS.gene93507 | 0.801177 | 1.02E-48 | -1.69E-46 |
| MS.gene060372 | MS.gene93507 | 0.840053 | 1.10E-57 | -1.69E-46 |
| MS.gene060801 | MS.gene93507 | 0.802863 | 4.58E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene93507 | 0.806141 | 9.50E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93507.t1 | MTR_3g026050 | 97.396 | 384 | 9 | 1 | 1 | 383 | 2 | 385 | 0.0 | 755 |
| MS.gene93507.t1 | MTR_4g109660 | 70.492 | 122 | 32 | 3 | 2 | 122 | 4 | 122 | 2.68e-49 | 169 |
| MS.gene93507.t1 | MTR_7g015010 | 47.917 | 192 | 76 | 7 | 36 | 224 | 39 | 209 | 1.33e-42 | 152 |
| MS.gene93507.t1 | MTR_6g015350 | 64.356 | 101 | 33 | 2 | 36 | 135 | 31 | 129 | 8.66e-36 | 134 |
| MS.gene93507.t1 | MTR_8g463380 | 58.824 | 68 | 28 | 0 | 50 | 117 | 48 | 115 | 3.44e-20 | 92.0 |
| MS.gene93507.t1 | MTR_2g090960 | 58.824 | 68 | 28 | 0 | 50 | 117 | 18 | 85 | 1.93e-19 | 88.6 |
| MS.gene93507.t1 | MTR_2g078200 | 57.353 | 68 | 29 | 0 | 50 | 117 | 14 | 81 | 5.27e-19 | 86.7 |
| MS.gene93507.t1 | MTR_4g079580 | 33.188 | 229 | 109 | 9 | 50 | 274 | 16 | 204 | 1.35e-18 | 86.3 |
| MS.gene93507.t1 | MTR_4g111935 | 33.099 | 142 | 87 | 2 | 57 | 195 | 133 | 269 | 5.79e-14 | 73.2 |
| MS.gene93507.t1 | MTR_6g017055 | 51.724 | 58 | 28 | 0 | 57 | 114 | 127 | 184 | 2.62e-12 | 68.2 |
| MS.gene93507.t1 | MTR_7g018500 | 49.123 | 57 | 29 | 0 | 58 | 114 | 122 | 178 | 2.55e-11 | 65.1 |
| MS.gene93507.t1 | MTR_1g103380 | 48.333 | 60 | 31 | 0 | 55 | 114 | 200 | 259 | 4.91e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93507.t1 | AT5G60970 | 41.071 | 336 | 137 | 15 | 39 | 355 | 46 | 339 | 3.59e-53 | 180 |
| MS.gene93507.t1 | AT5G08070 | 76.667 | 90 | 21 | 0 | 39 | 128 | 16 | 105 | 1.77e-42 | 149 |
| MS.gene93507.t1 | AT5G08070 | 76.667 | 90 | 21 | 0 | 39 | 128 | 16 | 105 | 1.77e-42 | 149 |
| MS.gene93507.t1 | AT3G02150 | 70.213 | 94 | 25 | 2 | 43 | 135 | 61 | 152 | 2.91e-39 | 141 |
| MS.gene93507.t1 | AT3G02150 | 38.019 | 313 | 114 | 12 | 23 | 326 | 43 | 284 | 4.99e-39 | 143 |
| MS.gene93507.t1 | AT1G30210 | 62.651 | 83 | 28 | 1 | 35 | 117 | 32 | 111 | 6.35e-26 | 107 |
| MS.gene93507.t1 | AT1G30210 | 62.651 | 83 | 28 | 1 | 35 | 117 | 32 | 111 | 6.35e-26 | 107 |
| MS.gene93507.t1 | AT4G18390 | 63.889 | 72 | 26 | 0 | 46 | 117 | 32 | 103 | 3.18e-25 | 105 |
| MS.gene93507.t1 | AT4G18390 | 63.889 | 72 | 26 | 0 | 46 | 117 | 32 | 103 | 3.18e-25 | 105 |
| MS.gene93507.t1 | AT1G53230 | 60.294 | 68 | 27 | 0 | 50 | 117 | 43 | 110 | 1.87e-21 | 95.5 |
| MS.gene93507.t1 | AT1G53230 | 60.294 | 68 | 27 | 0 | 50 | 117 | 43 | 110 | 1.87e-21 | 95.5 |
| MS.gene93507.t1 | AT3G15030 | 58.824 | 68 | 28 | 0 | 50 | 117 | 39 | 106 | 6.94e-21 | 94.0 |
| MS.gene93507.t1 | AT3G15030 | 58.824 | 68 | 28 | 0 | 50 | 117 | 39 | 106 | 6.94e-21 | 94.0 |
| MS.gene93507.t1 | AT3G15030 | 58.824 | 68 | 28 | 0 | 50 | 117 | 39 | 106 | 6.94e-21 | 94.0 |
| MS.gene93507.t1 | AT3G15030 | 58.824 | 68 | 28 | 0 | 50 | 117 | 39 | 106 | 6.94e-21 | 94.0 |
| MS.gene93507.t1 | AT2G31070 | 60.000 | 65 | 26 | 0 | 50 | 114 | 23 | 87 | 5.32e-19 | 87.8 |
| MS.gene93507.t1 | AT1G68800 | 49.254 | 67 | 34 | 0 | 48 | 114 | 104 | 170 | 2.97e-14 | 73.9 |
| MS.gene93507.t1 | AT1G68800 | 49.254 | 67 | 34 | 0 | 48 | 114 | 104 | 170 | 3.06e-14 | 73.9 |
| MS.gene93507.t1 | AT1G67260 | 44.286 | 70 | 39 | 0 | 45 | 114 | 76 | 145 | 7.37e-14 | 72.4 |
| MS.gene93507.t1 | AT1G67260 | 44.286 | 70 | 39 | 0 | 45 | 114 | 76 | 145 | 7.37e-14 | 72.4 |
| MS.gene93507.t1 | AT1G67260 | 44.286 | 70 | 39 | 0 | 45 | 114 | 76 | 145 | 7.97e-14 | 72.4 |
| MS.gene93507.t1 | AT3G18550 | 41.573 | 89 | 51 | 1 | 58 | 145 | 150 | 238 | 3.57e-12 | 67.8 |
| MS.gene93507.t1 | AT3G18550 | 41.573 | 89 | 51 | 1 | 58 | 145 | 150 | 238 | 3.57e-12 | 67.8 |
| MS.gene93507.t1 | AT3G18550 | 41.573 | 89 | 51 | 1 | 58 | 145 | 150 | 238 | 4.21e-12 | 67.8 |
| MS.gene93507.t1 | AT3G18550 | 50.877 | 57 | 28 | 0 | 58 | 114 | 150 | 206 | 1.20e-11 | 66.2 |
Find 71 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATGGCAAGGTCAAAATTT+TGG | 0.095121 | 3.4:+18254243 | MS.gene93507:CDS |
| TCAACTGGATTGTTCATAAA+AGG | 0.187602 | 3.4:-18254662 | None:intergenic |
| ATTCCAACAAATGTGGAATT+AGG | 0.207117 | 3.4:-18254212 | None:intergenic |
| ACCATTTAGCTCCAAGCTTC+TGG | 0.216080 | 3.4:+18254814 | MS.gene93507:CDS |
| CTTGATACTCTCACAATTCT+TGG | 0.226103 | 3.4:-18253876 | None:intergenic |
| CCATTTCCATTACTTTGATT+TGG | 0.264187 | 3.4:-18254545 | None:intergenic |
| AGCAAAGTTTGTACAATAAG+AGG | 0.267106 | 3.4:+18253924 | MS.gene93507:CDS |
| TGTTGGAATTCAAAATCTTA+TGG | 0.268566 | 3.4:+18254226 | MS.gene93507:CDS |
| AAATGGTTGAATTGTATTCT+TGG | 0.276038 | 3.4:-18254692 | None:intergenic |
| TTGAGTTTATGAACTGAAAA+TGG | 0.288622 | 3.4:-18254709 | None:intergenic |
| AGTTTGTCTTTATCTCAATT+TGG | 0.291167 | 3.4:+18254482 | MS.gene93507:CDS |
| CTTCAAGATAAACTTGGTTT+AGG | 0.292497 | 3.4:+18254002 | MS.gene93507:CDS |
| TGTGAATTTGCAAAAGGAAA+TGG | 0.304740 | 3.4:-18254578 | None:intergenic |
| TCCAGAAGCTTGGAGCTAAA+TGG | 0.342186 | 3.4:-18254815 | None:intergenic |
| GATCCTAATTCCACATTTGT+TGG | 0.359932 | 3.4:+18254209 | MS.gene93507:CDS |
| GTGAATTTGCAAAAGGAAAT+GGG | 0.367363 | 3.4:-18254577 | None:intergenic |
| GCAAATTCACAATTATTGTT+TGG | 0.370099 | 3.4:+18254590 | MS.gene93507:CDS |
| AACCAATCAATTACTTTACT+TGG | 0.384521 | 3.4:-18254029 | None:intergenic |
| GATCTACTTGTTGATGAGAT+TGG | 0.388449 | 3.4:-18254523 | None:intergenic |
| GTGAGAGTATCAAGAACATT+TGG | 0.394961 | 3.4:+18253885 | MS.gene93507:CDS |
| GCTTCTCATGAACTTTCTCT+TGG | 0.400555 | 3.4:+18254176 | MS.gene93507:CDS |
| AAGAGAGTACTTTAGTGAAA+AGG | 0.409808 | 3.4:+18254301 | MS.gene93507:CDS |
| AACCAAGTAAAGTAATTGAT+TGG | 0.421109 | 3.4:+18254027 | MS.gene93507:CDS |
| ATTGATCATGAAAAGGAAGT+AGG | 0.421778 | 3.4:-18254142 | None:intergenic |
| AGAAGGAGGTGATACTAGTA+TGG | 0.422169 | 3.4:+18253782 | MS.gene93507:CDS |
| GTTATTAAAATCCAGAAGCT+TGG | 0.425560 | 3.4:-18254825 | None:intergenic |
| GAGCTAAATGGTACCGGAAA+AGG | 0.430903 | 3.4:-18254803 | None:intergenic |
| TAAGAGGGTTAAGAGATAGA+AGG | 0.432238 | 3.4:+18253940 | MS.gene93507:CDS |
| TCTCAATTTGGAAGTAGTAA+TGG | 0.439801 | 3.4:+18254494 | MS.gene93507:CDS |
| GTGGAATTAGGATCATATAA+AGG | 0.445075 | 3.4:-18254200 | None:intergenic |
| CCAAATCAAAGTAATGGAAA+TGG | 0.449767 | 3.4:+18254545 | MS.gene93507:CDS |
| GAACATTTGGAGGCAAAGAT+AGG | 0.452527 | 3.4:+18253898 | MS.gene93507:CDS |
| AATAATTGTGAATTTGCAAA+AGG | 0.455659 | 3.4:-18254584 | None:intergenic |
| GGTACCGGAAAAGGTCTAAC+CGG | 0.467145 | 3.4:-18254794 | None:intergenic |
| TGAAATTGTGAAAAGCTTTG+AGG | 0.469301 | 3.4:-18254101 | None:intergenic |
| TCATATAATTGAATTGCTGT+TGG | 0.472619 | 3.4:-18253978 | None:intergenic |
| TTACTTGATTGATCATGAAA+AGG | 0.475662 | 3.4:-18254149 | None:intergenic |
| CAATAACAATAGTAACCAAC+CGG | 0.483604 | 3.4:+18254847 | MS.gene93507:CDS |
| TTGATCATGAAAAGGAAGTA+GGG | 0.484366 | 3.4:-18254141 | None:intergenic |
| GGTTAAGAGATAGAAGGATA+AGG | 0.491272 | 3.4:+18253946 | MS.gene93507:CDS |
| TCACTCATTCAATTCACCTC+CGG | 0.496606 | 3.4:+18254775 | MS.gene93507:CDS |
| CATTGTCTTGATGTACTTGA+AGG | 0.499610 | 3.4:-18253831 | None:intergenic |
| TTGAATGAGTGATGAAAAGA+TGG | 0.505850 | 3.4:-18254764 | None:intergenic |
| GTAGATCCAAATCAAAGTAA+TGG | 0.511396 | 3.4:+18254539 | MS.gene93507:CDS |
| GACATAGATTCAAGGACTAA+AGG | 0.516620 | 3.4:+18254266 | MS.gene93507:CDS |
| AAAGATGGAATGAGAGGATG+AGG | 0.519478 | 3.4:-18254749 | None:intergenic |
| TATGATCTTCAAGATAAACT+TGG | 0.527365 | 3.4:+18253996 | MS.gene93507:CDS |
| AATGAGGAAGAAAATCAAGT+TGG | 0.535305 | 3.4:+18254341 | MS.gene93507:CDS |
| AAATTAGAATGAGTCTCCAT+AGG | 0.541479 | 3.4:-18254413 | None:intergenic |
| AGCTTGGAGCTAAATGGTAC+CGG | 0.542441 | 3.4:-18254809 | None:intergenic |
| AATTAGAATGAGTCTCCATA+GGG | 0.543229 | 3.4:-18254412 | None:intergenic |
| CTTTGAGGAAATTGAAGTGG+AGG | 0.544948 | 3.4:-18254086 | None:intergenic |
| GCAAAGTTTGTACAATAAGA+GGG | 0.549035 | 3.4:+18253925 | MS.gene93507:CDS |
| ACAAACTAGAAGCTTCTGAA+TGG | 0.549145 | 3.4:-18254466 | None:intergenic |
| AGTAGGGTTTGTGAATGAAG+AGG | 0.550409 | 3.4:-18254125 | None:intergenic |
| AAGCTTTGAGGAAATTGAAG+TGG | 0.558131 | 3.4:-18254089 | None:intergenic |
| TTTGAGGAAATTGAAGTGGA+GGG | 0.564714 | 3.4:-18254085 | None:intergenic |
| ACTTTAGTGAAAAGGATAAG+TGG | 0.567465 | 3.4:+18254309 | MS.gene93507:CDS |
| CTACTCAAATGTGATGATGA+TGG | 0.574262 | 3.4:-18254635 | None:intergenic |
| GAATTCAAAATCTTATGGCA+AGG | 0.581024 | 3.4:+18254231 | MS.gene93507:CDS |
| GGTGTAGTAGAAGAAGAAGA+AGG | 0.583801 | 3.4:-18254614 | None:intergenic |
| CGACGAGCACTATCATCATC+CGG | 0.584897 | 3.4:-18254866 | None:intergenic |
| AATTATCAAGCTAAGCAAGA+AGG | 0.586890 | 3.4:+18253765 | MS.gene93507:CDS |
| AGAGTATCAAGAACATTTGG+AGG | 0.590062 | 3.4:+18253888 | MS.gene93507:CDS |
| TAAGTGGATCAAAACAAATG+AGG | 0.592313 | 3.4:+18254325 | MS.gene93507:CDS |
| TGATGAAAAGATGGAATGAG+AGG | 0.628080 | 3.4:-18254755 | None:intergenic |
| ATGATGGCAAGTTCAAGAGA+AGG | 0.630706 | 3.4:+18253741 | None:intergenic |
| TATCAAGCTAAGCAAGAAGG+AGG | 0.646358 | 3.4:+18253768 | MS.gene93507:CDS |
| GAGCACTATCATCATCCGGT+TGG | 0.656995 | 3.4:-18254862 | None:intergenic |
| CTTCAAGTACATCAAGACAA+TGG | 0.691220 | 3.4:+18253832 | MS.gene93507:CDS |
| ACCGGAAAAGGTCTAACCGG+AGG | 0.695953 | 3.4:-18254791 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATTGAAAAAAAATTCA+AGG | + | chr3.4:18253806-18253825 | MS.gene93507:CDS | 10.0% |
| !! | AATAATTGTGAATTTGCAAA+AGG | - | chr3.4:18254587-18254606 | None:intergenic | 20.0% |
| ! | AAATGGTTGAATTGTATTCT+TGG | - | chr3.4:18254695-18254714 | None:intergenic | 25.0% |
| ! | AACCAAGTAAAGTAATTGAT+TGG | + | chr3.4:18254027-18254046 | MS.gene93507:CDS | 25.0% |
| ! | AACCAATCAATTACTTTACT+TGG | - | chr3.4:18254032-18254051 | None:intergenic | 25.0% |
| ! | AGTTTGTCTTTATCTCAATT+TGG | + | chr3.4:18254482-18254501 | MS.gene93507:CDS | 25.0% |
| ! | GCAAATTCACAATTATTGTT+TGG | + | chr3.4:18254590-18254609 | MS.gene93507:CDS | 25.0% |
| ! | TATGATCTTCAAGATAAACT+TGG | + | chr3.4:18253996-18254015 | MS.gene93507:CDS | 25.0% |
| ! | TCATATAATTGAATTGCTGT+TGG | - | chr3.4:18253981-18254000 | None:intergenic | 25.0% |
| ! | TGTTGGAATTCAAAATCTTA+TGG | + | chr3.4:18254226-18254245 | MS.gene93507:CDS | 25.0% |
| ! | TTACTTGATTGATCATGAAA+AGG | - | chr3.4:18254152-18254171 | None:intergenic | 25.0% |
| ! | TTGAGTTTATGAACTGAAAA+TGG | - | chr3.4:18254712-18254731 | None:intergenic | 25.0% |
| !! | ATTTTGAATTCCAACAAATG+TGG | - | chr3.4:18254222-18254241 | None:intergenic | 25.0% |
| AAATTAGAATGAGTCTCCAT+AGG | - | chr3.4:18254416-18254435 | None:intergenic | 30.0% | |
| AATGAGGAAGAAAATCAAGT+TGG | + | chr3.4:18254341-18254360 | MS.gene93507:CDS | 30.0% | |
| AATTAGAATGAGTCTCCATA+GGG | - | chr3.4:18254415-18254434 | None:intergenic | 30.0% | |
| AATTATCAAGCTAAGCAAGA+AGG | + | chr3.4:18253765-18253784 | MS.gene93507:CDS | 30.0% | |
| ACTTTAGTGAAAAGGATAAG+TGG | + | chr3.4:18254309-18254328 | MS.gene93507:CDS | 30.0% | |
| AGCAAAGTTTGTACAATAAG+AGG | + | chr3.4:18253924-18253943 | MS.gene93507:CDS | 30.0% | |
| ATTCCAACAAATGTGGAATT+AGG | - | chr3.4:18254215-18254234 | None:intergenic | 30.0% | |
| ATTGATCATGAAAAGGAAGT+AGG | - | chr3.4:18254145-18254164 | None:intergenic | 30.0% | |
| CAATAACAATAGTAACCAAC+CGG | + | chr3.4:18254847-18254866 | MS.gene93507:CDS | 30.0% | |
| CCATTTCCATTACTTTGATT+TGG | - | chr3.4:18254548-18254567 | None:intergenic | 30.0% | |
| CTTCAAGATAAACTTGGTTT+AGG | + | chr3.4:18254002-18254021 | MS.gene93507:CDS | 30.0% | |
| GAATTCAAAATCTTATGGCA+AGG | + | chr3.4:18254231-18254250 | MS.gene93507:CDS | 30.0% | |
| GCAAAGTTTGTACAATAAGA+GGG | + | chr3.4:18253925-18253944 | MS.gene93507:CDS | 30.0% | |
| GTAGATCCAAATCAAAGTAA+TGG | + | chr3.4:18254539-18254558 | MS.gene93507:CDS | 30.0% | |
| GTGAATTTGCAAAAGGAAAT+GGG | - | chr3.4:18254580-18254599 | None:intergenic | 30.0% | |
| GTGGAATTAGGATCATATAA+AGG | - | chr3.4:18254203-18254222 | None:intergenic | 30.0% | |
| GTTATTAAAATCCAGAAGCT+TGG | - | chr3.4:18254828-18254847 | None:intergenic | 30.0% | |
| TAAGTGGATCAAAACAAATG+AGG | + | chr3.4:18254325-18254344 | MS.gene93507:CDS | 30.0% | |
| TCAACTGGATTGTTCATAAA+AGG | - | chr3.4:18254665-18254684 | None:intergenic | 30.0% | |
| TCTCAATTTGGAAGTAGTAA+TGG | + | chr3.4:18254494-18254513 | MS.gene93507:CDS | 30.0% | |
| TGAAATTGTGAAAAGCTTTG+AGG | - | chr3.4:18254104-18254123 | None:intergenic | 30.0% | |
| TGTGAATTTGCAAAAGGAAA+TGG | - | chr3.4:18254581-18254600 | None:intergenic | 30.0% | |
| TTGAATGAGTGATGAAAAGA+TGG | - | chr3.4:18254767-18254786 | None:intergenic | 30.0% | |
| TTGATCATGAAAAGGAAGTA+GGG | - | chr3.4:18254144-18254163 | None:intergenic | 30.0% | |
| ! | ATTCTTGGATCATTTTCAAC+TGG | - | chr3.4:18254680-18254699 | None:intergenic | 30.0% |
| ! | CCAAATCAAAGTAATGGAAA+TGG | + | chr3.4:18254545-18254564 | MS.gene93507:CDS | 30.0% |
| ! | TATGGCAAGGTCAAAATTTT+GGG | + | chr3.4:18254244-18254263 | MS.gene93507:CDS | 30.0% |
| ! | TTATGGCAAGGTCAAAATTT+TGG | + | chr3.4:18254243-18254262 | MS.gene93507:CDS | 30.0% |
| !! | AAGAGAGTACTTTAGTGAAA+AGG | + | chr3.4:18254301-18254320 | MS.gene93507:CDS | 30.0% |
| !!! | AATTTTGGGACATAGATTCA+AGG | + | chr3.4:18254258-18254277 | MS.gene93507:CDS | 30.0% |
| ACAAACTAGAAGCTTCTGAA+TGG | - | chr3.4:18254469-18254488 | None:intergenic | 35.0% | |
| CATTGTCTTGATGTACTTGA+AGG | - | chr3.4:18253834-18253853 | None:intergenic | 35.0% | |
| CTTCAAGTACATCAAGACAA+TGG | + | chr3.4:18253832-18253851 | MS.gene93507:CDS | 35.0% | |
| CTTGATACTCTCACAATTCT+TGG | - | chr3.4:18253879-18253898 | None:intergenic | 35.0% | |
| GACATAGATTCAAGGACTAA+AGG | + | chr3.4:18254266-18254285 | MS.gene93507:CDS | 35.0% | |
| GATCCTAATTCCACATTTGT+TGG | + | chr3.4:18254209-18254228 | MS.gene93507:CDS | 35.0% | |
| GGTTAAGAGATAGAAGGATA+AGG | + | chr3.4:18253946-18253965 | MS.gene93507:CDS | 35.0% | |
| TAAGAGGGTTAAGAGATAGA+AGG | + | chr3.4:18253940-18253959 | MS.gene93507:CDS | 35.0% | |
| TGATGAAAAGATGGAATGAG+AGG | - | chr3.4:18254758-18254777 | None:intergenic | 35.0% | |
| TTTGAGGAAATTGAAGTGGA+GGG | - | chr3.4:18254088-18254107 | None:intergenic | 35.0% | |
| ! | AACTCAAAAGCTTTTCCCTA+TGG | + | chr3.4:18254397-18254416 | MS.gene93507:CDS | 35.0% |
| ! | AGAGTATCAAGAACATTTGG+AGG | + | chr3.4:18253888-18253907 | MS.gene93507:CDS | 35.0% |
| ! | CTACTCAAATGTGATGATGA+TGG | - | chr3.4:18254638-18254657 | None:intergenic | 35.0% |
| ! | GATCTACTTGTTGATGAGAT+TGG | - | chr3.4:18254526-18254545 | None:intergenic | 35.0% |
| !! | AAGCTTTGAGGAAATTGAAG+TGG | - | chr3.4:18254092-18254111 | None:intergenic | 35.0% |
| !! | GTGAGAGTATCAAGAACATT+TGG | + | chr3.4:18253885-18253904 | MS.gene93507:CDS | 35.0% |
| AAAGATGGAATGAGAGGATG+AGG | - | chr3.4:18254752-18254771 | None:intergenic | 40.0% | |
| AGAAGGAGGTGATACTAGTA+TGG | + | chr3.4:18253782-18253801 | MS.gene93507:CDS | 40.0% | |
| AGTAGGGTTTGTGAATGAAG+AGG | - | chr3.4:18254128-18254147 | None:intergenic | 40.0% | |
| GAACATTTGGAGGCAAAGAT+AGG | + | chr3.4:18253898-18253917 | MS.gene93507:CDS | 40.0% | |
| GCTTCTCATGAACTTTCTCT+TGG | + | chr3.4:18254176-18254195 | MS.gene93507:CDS | 40.0% | |
| GGTGTAGTAGAAGAAGAAGA+AGG | - | chr3.4:18254617-18254636 | None:intergenic | 40.0% | |
| TATCAAGCTAAGCAAGAAGG+AGG | + | chr3.4:18253768-18253787 | MS.gene93507:CDS | 40.0% | |
| TCACTCATTCAATTCACCTC+CGG | + | chr3.4:18254775-18254794 | MS.gene93507:CDS | 40.0% | |
| ! | CTTTGAGGAAATTGAAGTGG+AGG | - | chr3.4:18254089-18254108 | None:intergenic | 40.0% |
| AGCTTGGAGCTAAATGGTAC+CGG | - | chr3.4:18254812-18254831 | None:intergenic | 45.0% | |
| TCCAGAAGCTTGGAGCTAAA+TGG | - | chr3.4:18254818-18254837 | None:intergenic | 45.0% | |
| ! | ACCATTTAGCTCCAAGCTTC+TGG | + | chr3.4:18254814-18254833 | MS.gene93507:CDS | 45.0% |
| ! | GAGCTAAATGGTACCGGAAA+AGG | - | chr3.4:18254806-18254825 | None:intergenic | 45.0% |
| CGACGAGCACTATCATCATC+CGG | - | chr3.4:18254869-18254888 | None:intergenic | 50.0% | |
| GAGCACTATCATCATCCGGT+TGG | - | chr3.4:18254865-18254884 | None:intergenic | 50.0% | |
| ! | ACCTCCGGTTAGACCTTTTC+CGG | + | chr3.4:18254790-18254809 | MS.gene93507:CDS | 50.0% |
| ! | GGTACCGGAAAAGGTCTAAC+CGG | - | chr3.4:18254797-18254816 | None:intergenic | 50.0% |
| ACCGGAAAAGGTCTAACCGG+AGG | - | chr3.4:18254794-18254813 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 18253744 | 18254895 | 18253744 | ID=MS.gene93507 |
| chr3.4 | mRNA | 18253744 | 18254895 | 18253744 | ID=MS.gene93507.t1;Parent=MS.gene93507 |
| chr3.4 | exon | 18253744 | 18254895 | 18253744 | ID=MS.gene93507.t1.exon1;Parent=MS.gene93507.t1 |
| chr3.4 | CDS | 18253744 | 18254895 | 18253744 | ID=cds.MS.gene93507.t1;Parent=MS.gene93507.t1 |
| Gene Sequence |
| Protein sequence |
