Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94067.t1 | KEH26029.1 | 90.6 | 663 | 61 | 1 | 390 | 1052 | 183 | 844 | 1.20E-201 | 713.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94067.t1 | Q9SD62 | 39.5 | 408 | 209 | 11 | 682 | 1052 | 612 | 1018 | 3.4e-67 | 258.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94067.t1 | G7ZYM4 | 90.6 | 663 | 61 | 1 | 390 | 1052 | 183 | 844 | 8.7e-202 | 713.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene94067 | 0.807932 | 3.97E-50 | -1.69E-46 |
| MS.gene052389 | MS.gene94067 | 0.821312 | 4.32E-53 | -1.69E-46 |
| MS.gene052464 | MS.gene94067 | 0.809875 | 1.52E-50 | -1.69E-46 |
| MS.gene054083 | MS.gene94067 | 0.809199 | 2.13E-50 | -1.69E-46 |
| MS.gene054093 | MS.gene94067 | 0.826249 | 3.01E-54 | -1.69E-46 |
| MS.gene05414 | MS.gene94067 | 0.803259 | 3.80E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene94067 | -0.811757 | 5.97E-51 | -1.69E-46 |
| MS.gene054468 | MS.gene94067 | 0.819747 | 9.87E-53 | -1.69E-46 |
| MS.gene054826 | MS.gene94067 | 0.811374 | 7.23E-51 | -1.69E-46 |
| MS.gene058378 | MS.gene94067 | 0.806555 | 7.77E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 195 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTTGTCAAAATTATTTC+TGG | 0.116942 | 5.4:-45582818 | None:intergenic |
| GAAAGTGACTCTAAGGATTT+TGG | 0.124511 | 5.4:-45591003 | None:intergenic |
| CTGAGATACCTTCCTCATTT+TGG | 0.124725 | 5.4:+45590707 | MS.gene94067:CDS |
| CTATCCTCCAATGCTTTAAT+TGG | 0.143382 | 5.4:+45590757 | MS.gene94067:CDS |
| GAAGCATTGGATATACTATT+TGG | 0.144665 | 5.4:-45590121 | None:intergenic |
| AATGTTAAGCTTAAGTTTCT+TGG | 0.176677 | 5.4:+45590948 | MS.gene94067:CDS |
| GGCATGCTTCCATCAAATTT+TGG | 0.186813 | 5.4:+45590037 | MS.gene94067:CDS |
| CTCGTTGCAGTTAGCCTTAC+TGG | 0.191392 | 5.4:+45590148 | MS.gene94067:CDS |
| GCAGATTCTTGTGGAATTAA+TGG | 0.192673 | 5.4:+45590397 | MS.gene94067:CDS |
| CTTCAAGATAATTTCCTTAC+AGG | 0.196028 | 5.4:+45582601 | MS.gene94067:CDS |
| CCTGATTGTATTATCTTTGA+TGG | 0.201175 | 5.4:+45590453 | MS.gene94067:CDS |
| ATTGCACATGTGAGTGATTT+TGG | 0.216637 | 5.4:+45591789 | MS.gene94067:CDS |
| GGAATTATCCCCAATTCTTT+TGG | 0.225111 | 5.4:+45590184 | MS.gene94067:CDS |
| TCAATCCCTGATGTAATTAA+AGG | 0.227940 | 5.4:+45590493 | MS.gene94067:CDS |
| CTTGATGATAACAATTTAAA+TGG | 0.232300 | 5.4:+45589620 | MS.gene94067:CDS |
| TTTGAGAGCTGTTATACTTT+TGG | 0.253307 | 5.4:+45590804 | MS.gene94067:CDS |
| TTGATGGATAATGATTTAAA+TGG | 0.255334 | 5.4:+45590469 | MS.gene94067:CDS |
| AAGGGAGTCATTTCAGTTAA+AGG | 0.264595 | 5.4:+45592086 | MS.gene94067:CDS |
| TCTGAAAACATTTCATTTGT+TGG | 0.276761 | 5.4:-45592161 | None:intergenic |
| CAGCTATGGGATAATGTTAA+TGG | 0.285736 | 5.4:+45592118 | MS.gene94067:CDS |
| TTACTTGGAAGAGGTGGTTT+TGG | 0.289735 | 5.4:+45591396 | MS.gene94067:CDS |
| CGGAGTGTTACCAACATGTT+TGG | 0.295217 | 5.4:+45590633 | MS.gene94067:CDS |
| ACTTATCCGCAGAATACTTC+TGG | 0.295786 | 5.4:+45590374 | MS.gene94067:CDS |
| ATGTTAATGGAAATGTTTAC+TGG | 0.295819 | 5.4:+45592131 | MS.gene94067:CDS |
| GAATACTTCAAAAGCATAAA+AGG | 0.297889 | 5.4:+45591265 | MS.gene94067:CDS |
| ATACTCTAACATTGACAAAT+TGG | 0.303677 | 5.4:-45581132 | None:intergenic |
| AAACTTCAACAATTGGATAT+TGG | 0.304263 | 5.4:+45581071 | MS.gene94067:CDS |
| TCTTAAATCCCCAAAAGAAT+TGG | 0.310292 | 5.4:-45590194 | None:intergenic |
| TCATAATAGGAAATCCTTCT+TGG | 0.310728 | 5.4:-45591336 | None:intergenic |
| TCAAAAGCATAAAAGGAAAA+AGG | 0.314630 | 5.4:+45591272 | MS.gene94067:CDS |
| ATCACTAGAGATTTGAAATC+AGG | 0.316977 | 5.4:-45591579 | None:intergenic |
| TGATAAATTCAAATATCATT+TGG | 0.318516 | 5.4:-45592393 | None:intergenic |
| GGTTCGATACCAACGGAGTT+TGG | 0.322082 | 5.4:+45589893 | MS.gene94067:intron |
| CAAATGGAAGTGTGGAAAAT+TGG | 0.322807 | 5.4:+45591613 | MS.gene94067:CDS |
| AAGATCAGAAAGTGACTCTA+AGG | 0.335584 | 5.4:-45591010 | None:intergenic |
| TTTAGCAAATAACTCCTTAT+CGG | 0.339030 | 5.4:+45581307 | MS.gene94067:CDS |
| CTTAAATCCCCAAAAGAATT+GGG | 0.346235 | 5.4:-45590193 | None:intergenic |
| GTAATCCATAACTTCCATAT+TGG | 0.349939 | 5.4:-45592228 | None:intergenic |
| TGCTTGCACGAGTTCATAAT+AGG | 0.365097 | 5.4:-45591349 | None:intergenic |
| GGACGTATGCCAGCTGATAT+TGG | 0.367360 | 5.4:+45582838 | MS.gene94067:CDS |
| GTTATCAAAACTTCAACAAT+TGG | 0.367431 | 5.4:+45581064 | MS.gene94067:CDS |
| TGTAACCCTTTAATTACATC+AGG | 0.371051 | 5.4:-45590499 | None:intergenic |
| AAGAATTAACCTTGAAAACT+TGG | 0.377924 | 5.4:+45592183 | MS.gene94067:CDS |
| ACATACAGAGTATGGATCTA+AGG | 0.379938 | 5.4:+45592067 | MS.gene94067:intron |
| ATGAATTTCATTCCCATGTT+GGG | 0.380424 | 5.4:-45592261 | None:intergenic |
| ATTGGCTATAATAATATTGT+TGG | 0.381334 | 5.4:+45581089 | MS.gene94067:CDS |
| ATTTGTTTCCATACATGATC+AGG | 0.384788 | 5.4:-45590084 | None:intergenic |
| ATCAATGGCTAATTCCAATA+TGG | 0.385222 | 5.4:+45592214 | MS.gene94067:CDS |
| CATACATGATCAGGTATTGT+AGG | 0.385889 | 5.4:-45590075 | None:intergenic |
| TCAACTTCAGAATATACAAT+TGG | 0.386733 | 5.4:+45589925 | MS.gene94067:CDS |
| TTGCAATCACGCCAAACATT+TGG | 0.387919 | 5.4:-45582772 | None:intergenic |
| TAATTCCAATATGGAAGTTA+TGG | 0.389824 | 5.4:+45592223 | MS.gene94067:CDS |
| AGCTTTACATAGGATCTAAT+AGG | 0.390511 | 5.4:+45590677 | MS.gene94067:CDS |
| GTAAGATCATTAATTCCTTT+CGG | 0.390734 | 5.4:-45582559 | None:intergenic |
| AGAAATAACAGGTTGCTGTT+TGG | 0.395023 | 5.4:+45581236 | MS.gene94067:CDS |
| CTGGTGAGATACCAAATGTT+TGG | 0.395790 | 5.4:+45582761 | MS.gene94067:CDS |
| CTTGAACTAAATTCTTTCTC+AGG | 0.398547 | 5.4:+45590016 | MS.gene94067:CDS |
| GGAAATATTCCACTTGAAAT+CGG | 0.398697 | 5.4:+45590418 | MS.gene94067:CDS |
| GAACTCGTGCAAGCAACTAA+TGG | 0.405667 | 5.4:+45591357 | MS.gene94067:CDS |
| TTCAAGAAACTTATGGCTGT+TGG | 0.406140 | 5.4:-45590859 | None:intergenic |
| CTGTAAGGAAATTATCTTGA+AGG | 0.410060 | 5.4:-45582600 | None:intergenic |
| TCGTTGCAATACTTATATCT+TGG | 0.414027 | 5.4:+45582649 | MS.gene94067:CDS |
| ATGATCAGGTATTGTAGGTT+AGG | 0.416476 | 5.4:-45590070 | None:intergenic |
| CTACAATACCTGATCATGTA+TGG | 0.418566 | 5.4:+45590076 | MS.gene94067:CDS |
| ACATTAATATGTTGCCTGTA+AGG | 0.421283 | 5.4:-45582615 | None:intergenic |
| CTGAGAAAGAATTTAGTTCA+AGG | 0.423219 | 5.4:-45590015 | None:intergenic |
| GTGATGGAGTTTATGTCAAA+TGG | 0.426775 | 5.4:+45591597 | MS.gene94067:CDS |
| CATGAAGATAGAGTGATCTA+AGG | 0.429818 | 5.4:-45582726 | None:intergenic |
| AGTTGATTACACGTCTCATC+TGG | 0.435147 | 5.4:-45589650 | None:intergenic |
| ATGTATGGAAACAAATTTGT+TGG | 0.436242 | 5.4:+45590091 | MS.gene94067:CDS |
| CCTTCTTGGAACTCCTATAG+TGG | 0.436575 | 5.4:-45591322 | None:intergenic |
| GGATAAGTTTCCAATGGACT+TGG | 0.438259 | 5.4:-45590359 | None:intergenic |
| AGCCCTTGACAAGCATTTGA+TGG | 0.439404 | 5.4:-45582697 | None:intergenic |
| CAATTAAAGCATTGGAGGAT+AGG | 0.439921 | 5.4:-45590756 | None:intergenic |
| CACAACAATCATGAGTGTTA+TGG | 0.441835 | 5.4:-45591214 | None:intergenic |
| CATTTAAATTGTTATCATCA+AGG | 0.442814 | 5.4:-45589619 | None:intergenic |
| GAGAGGGGTTTATCCACTAT+AGG | 0.445066 | 5.4:+45591309 | MS.gene94067:CDS |
| TGTCATATTAATTCGTGCCT+CGG | 0.445869 | 5.4:-45592324 | None:intergenic |
| GACAAATTGGATATAGATTG+AGG | 0.446056 | 5.4:-45581119 | None:intergenic |
| CAATCCCTGATGTAATTAAA+GGG | 0.447989 | 5.4:+45590494 | MS.gene94067:CDS |
| AAGATTTCCAATTAAAGCAT+TGG | 0.449994 | 5.4:-45590764 | None:intergenic |
| AAAGGGTTACATAAACTTCA+AGG | 0.450140 | 5.4:+45590511 | MS.gene94067:CDS |
| TCATCCAGTAAAACATTACT+AGG | 0.452134 | 5.4:-45591759 | None:intergenic |
| CATGAATTTCATTCCCATGT+TGG | 0.456090 | 5.4:-45592262 | None:intergenic |
| GGAGTGTTACCAACATGTTT+GGG | 0.456250 | 5.4:+45590634 | MS.gene94067:CDS |
| GTCAAATTTCCAATATCAGC+TGG | 0.458711 | 5.4:-45582847 | None:intergenic |
| AAAGGAGATGTGTACAGCTA+TGG | 0.460020 | 5.4:+45592104 | MS.gene94067:CDS |
| GCTCTCAAATTCTTAATCTC+AGG | 0.462634 | 5.4:-45590790 | None:intergenic |
| CACTAAGTTCATTACCAGTA+AGG | 0.463923 | 5.4:-45590162 | None:intergenic |
| TTAGCAAATAACTCCTTATC+GGG | 0.466796 | 5.4:+45581308 | MS.gene94067:CDS |
| AGGTCAAATCCAAAATTTGA+TGG | 0.469139 | 5.4:-45590046 | None:intergenic |
| ACAGGGACTTTAGCTACTCT+TGG | 0.470252 | 5.4:+45591852 | MS.gene94067:CDS |
| AGTCTTCAACATTTCAACAT+TGG | 0.473266 | 5.4:+45589982 | MS.gene94067:CDS |
| TATAAAGGAATGCTTTCTAG+TGG | 0.474551 | 5.4:+45591426 | MS.gene94067:CDS |
| GCAATGCAATGCGCAACCTT+CGG | 0.474943 | 5.4:+45591517 | MS.gene94067:CDS |
| TGCAACTTGTAAGTGAAGAA+AGG | 0.477439 | 5.4:-45590285 | None:intergenic |
| TTCACAAAGCTCATCAATCA+TGG | 0.477867 | 5.4:-45590566 | None:intergenic |
| GGTCAATTTGTTACATGCTA+AGG | 0.480434 | 5.4:-45590899 | None:intergenic |
| ATTTCCAAGCTCTTGGATGA+AGG | 0.482394 | 5.4:+45591813 | MS.gene94067:CDS |
| AACTTGGATTAGTGAATCAA+TGG | 0.482584 | 5.4:+45592199 | MS.gene94067:CDS |
| TTGGTCAACTTCGTGGGTTG+AGG | 0.483662 | 5.4:+45581201 | MS.gene94067:CDS |
| TCACTTAGAAAGCTTTACAT+AGG | 0.483776 | 5.4:+45590667 | MS.gene94067:CDS |
| CTTATCCGCAGAATACTTCT+GGG | 0.487263 | 5.4:+45590375 | MS.gene94067:CDS |
| CTCATGTTTCCGATTTCAAG+TGG | 0.487710 | 5.4:-45590427 | None:intergenic |
| TGATCTTACACAACTGAAAA+CGG | 0.490899 | 5.4:+45582573 | MS.gene94067:CDS |
| TCAAAGAAGAGATGTTGAAG+AGG | 0.492478 | 5.4:-45589586 | None:intergenic |
| ATTTCCAATTAAAGCATTGG+AGG | 0.493238 | 5.4:-45590761 | None:intergenic |
| GTCATATTAATTCGTGCCTC+GGG | 0.493990 | 5.4:-45592323 | None:intergenic |
| CAACTTCAGAATATACAATT+GGG | 0.495535 | 5.4:+45589926 | MS.gene94067:CDS |
| GAGATGTTGAAGAGGGACAA+TGG | 0.496803 | 5.4:-45589578 | None:intergenic |
| GAGATACAAAAGTTGAAGCT+TGG | 0.497099 | 5.4:-45582869 | None:intergenic |
| GAGAGTAATTTACTTGGAAG+AGG | 0.499582 | 5.4:+45591387 | MS.gene94067:CDS |
| TCAAAACTTCCCAAGTCCAT+TGG | 0.499602 | 5.4:+45590349 | MS.gene94067:CDS |
| AACACTCATGATTGTTGTGT+TGG | 0.500177 | 5.4:+45591218 | MS.gene94067:CDS |
| CTTACTGGTAATGAACTTAG+TGG | 0.500981 | 5.4:+45590163 | MS.gene94067:CDS |
| TGAGTATATCATACCCGATA+AGG | 0.501884 | 5.4:-45581321 | None:intergenic |
| GACATGTTGGAAATTGTTGT+TGG | 0.503123 | 5.4:-45581266 | None:intergenic |
| TGCAACGAGATTCGAAGCAT+TGG | 0.504558 | 5.4:-45590134 | None:intergenic |
| TTCAGTGAGAGTAATTTACT+TGG | 0.504857 | 5.4:+45591381 | MS.gene94067:CDS |
| GGTTGAAAGTCCACTTGAGA+GGG | 0.509488 | 5.4:+45591293 | MS.gene94067:CDS |
| TTGTCCTTCATCCAAGAGCT+TGG | 0.510295 | 5.4:-45591817 | None:intergenic |
| AACATTTCACCAAGTGATGT+TGG | 0.511361 | 5.4:-45590931 | None:intergenic |
| AATCTATGCGGAGAAATTTG+AGG | 0.511978 | 5.4:-45590219 | None:intergenic |
| TTCTTCAAGTGATGACATGT+TGG | 0.513627 | 5.4:-45581279 | None:intergenic |
| TACTTCTGGGCAGATTCTTG+TGG | 0.514308 | 5.4:+45590388 | MS.gene94067:CDS |
| CCACTATAGGAGTTCCAAGA+AGG | 0.518200 | 5.4:+45591322 | MS.gene94067:CDS |
| CCATCAAAGATAATACAATC+AGG | 0.519086 | 5.4:-45590453 | None:intergenic |
| GTCATATTTCCCAAACATGT+TGG | 0.519998 | 5.4:-45590643 | None:intergenic |
| AGATAGAGTGATCTAAGGTT+CGG | 0.521173 | 5.4:-45582721 | None:intergenic |
| CTCCCATCAAATGCTTGTCA+AGG | 0.521727 | 5.4:+45582694 | MS.gene94067:CDS |
| CTCAAATTCTTAATCTCAGG+TGG | 0.525864 | 5.4:-45590787 | None:intergenic |
| GCCCTTGACAAGCATTTGAT+GGG | 0.527336 | 5.4:-45582696 | None:intergenic |
| ACACTCATGATTGTTGTGTT+GGG | 0.529824 | 5.4:+45591219 | MS.gene94067:CDS |
| GGTCTTGATCTTGATTAATG+AGG | 0.531453 | 5.4:-45592357 | None:intergenic |
| GAACGAGATTTCTATGCCGA+AGG | 0.534268 | 5.4:-45591533 | None:intergenic |
| TAAGTATTGCAACGATGAGT+TGG | 0.535400 | 5.4:-45582641 | None:intergenic |
| CTTGGATACAATAACATGAC+TGG | 0.536907 | 5.4:+45582667 | MS.gene94067:CDS |
| GTATCTCATAAACAACAACT+TGG | 0.537238 | 5.4:+45582885 | MS.gene94067:CDS |
| AAGGAGATGTGTACAGCTAT+GGG | 0.538595 | 5.4:+45592105 | MS.gene94067:CDS |
| CATGCCATTGGTCAACTTCG+TGG | 0.539839 | 5.4:+45581194 | MS.gene94067:CDS |
| CATACAGAGTATGGATCTAA+GGG | 0.545399 | 5.4:+45592068 | MS.gene94067:intron |
| AGTAATTTACTTGGAAGAGG+TGG | 0.546471 | 5.4:+45591390 | MS.gene94067:CDS |
| ATGCCATTGGTCAACTTCGT+GGG | 0.550940 | 5.4:+45581195 | MS.gene94067:CDS |
| CTTAGTTACAATAGACTGCA+AGG | 0.551742 | 5.4:+45590541 | MS.gene94067:CDS |
| TCTCATAAACAACAACTTGG+AGG | 0.556168 | 5.4:+45582888 | MS.gene94067:CDS |
| TTGAGCTCAAATCTCATCAA+AGG | 0.562814 | 5.4:+45581161 | MS.gene94067:CDS |
| ACTCTTGGTTATGTTGCACC+AGG | 0.565231 | 5.4:+45591867 | MS.gene94067:CDS |
| TTGACCAATGGCATGTGGTA+TGG | 0.565270 | 5.4:-45581186 | None:intergenic |
| ATCTTCAAGATTCCAAAATG+AGG | 0.570791 | 5.4:-45590719 | None:intergenic |
| CTCATAAACAACAACTTGGA+GGG | 0.572546 | 5.4:+45582889 | MS.gene94067:CDS |
| GCATTAGAGTATCTCCATCA+TGG | 0.573367 | 5.4:+45591702 | MS.gene94067:CDS |
| TTCTGCGGATAAGTTTCCAA+TGG | 0.573693 | 5.4:-45590365 | None:intergenic |
| TTCAAGTCACAATGAACCAC+TGG | 0.573908 | 5.4:-45591735 | None:intergenic |
| TCAGGTATTGTAGGTTAGGA+AGG | 0.576819 | 5.4:-45590066 | None:intergenic |
| GGAACCATTCCACAATCGAT+TGG | 0.580423 | 5.4:+45589716 | MS.gene94067:CDS |
| AGGTTGAAAGTCCACTTGAG+AGG | 0.583368 | 5.4:+45591292 | MS.gene94067:CDS |
| TCCCATCAAATGCTTGTCAA+GGG | 0.586028 | 5.4:+45582695 | MS.gene94067:CDS |
| TACAAGTTAGACTCCCAACA+TGG | 0.586211 | 5.4:+45592248 | MS.gene94067:CDS |
| TGATTTCAAATCTCTAGTGA+TGG | 0.587312 | 5.4:+45591581 | MS.gene94067:CDS |
| CAAAGAAGAGATGTTGAAGA+GGG | 0.587400 | 5.4:-45589585 | None:intergenic |
| GATAAGTTTCCAATGGACTT+GGG | 0.589035 | 5.4:-45590358 | None:intergenic |
| GTGCAGTTGCCAATCGATTG+TGG | 0.589446 | 5.4:-45589725 | None:intergenic |
| TTGGGAAATAACAGCTTGAG+TGG | 0.591488 | 5.4:+45589944 | MS.gene94067:CDS |
| CTGAGATCGCCAAACTCCGT+TGG | 0.591597 | 5.4:-45589902 | None:intergenic |
| GTGGATAAACCCCTCTCAAG+TGG | 0.595118 | 5.4:-45591303 | None:intergenic |
| GGAACCATACCACATGCCAT+TGG | 0.597836 | 5.4:+45581182 | MS.gene94067:CDS |
| TCAAGATTCCAAAATGAGGA+AGG | 0.606084 | 5.4:-45590715 | None:intergenic |
| ATAAAGGAATGCTTTCTAGT+GGG | 0.608119 | 5.4:+45591427 | MS.gene94067:CDS |
| GTAACCCTTTAATTACATCA+GGG | 0.610152 | 5.4:-45590498 | None:intergenic |
| TCATGGTTCTTCAATACCAG+TGG | 0.610805 | 5.4:+45591719 | MS.gene94067:CDS |
| GTTTATGTCAAATGGAAGTG+TGG | 0.612354 | 5.4:+45591605 | MS.gene94067:CDS |
| TAAACGAGGACTGCCACACA+AGG | 0.615105 | 5.4:-45591130 | None:intergenic |
| CTGGTATTGAAGAACCATGA+TGG | 0.615163 | 5.4:-45591716 | None:intergenic |
| TACCTCCATGTGATCAGCAT+AGG | 0.619013 | 5.4:+45591157 | MS.gene94067:CDS |
| GTTGAACATAATGATAGATG+TGG | 0.619920 | 5.4:+45591674 | MS.gene94067:CDS |
| TTGCAAGGAGAGATTCCTGA+TGG | 0.623558 | 5.4:+45591060 | MS.gene94067:CDS |
| TTAAATCCCCAAAAGAATTG+GGG | 0.627439 | 5.4:-45590192 | None:intergenic |
| TAAAGTACTTGACTTGACAA+TGG | 0.627646 | 5.4:+45591464 | MS.gene94067:CDS |
| GTTGCCAATCGATTGTGGAA+TGG | 0.635007 | 5.4:-45589720 | None:intergenic |
| CGAAGTTGACCAATGGCATG+TGG | 0.641428 | 5.4:-45581191 | None:intergenic |
| GTTGAAAGTCCACTTGAGAG+GGG | 0.646436 | 5.4:+45591294 | MS.gene94067:CDS |
| CAAGGAGAGATTCCTGATGG+AGG | 0.646665 | 5.4:+45591063 | MS.gene94067:CDS |
| AAGTGATGTTGGAATAGACT+CGG | 0.649712 | 5.4:-45590920 | None:intergenic |
| CAACCCACGAAGTTGACCAA+TGG | 0.650872 | 5.4:-45581198 | None:intergenic |
| GAGTCTATTCCAACATCACT+TGG | 0.652798 | 5.4:+45590922 | MS.gene94067:CDS |
| TCAAATTATTGTAATCTATG+CGG | 0.652912 | 5.4:-45590231 | None:intergenic |
| ACTAAAGGAGGAATTCCGAA+AGG | 0.654223 | 5.4:+45582544 | MS.gene94067:intron |
| TTCCTATGCTGATCACATGG+AGG | 0.664084 | 5.4:-45591159 | None:intergenic |
| TTAGTTACAATAGACTGCAA+GGG | 0.664322 | 5.4:+45590542 | MS.gene94067:CDS |
| ATGCATAATGAAGCCTTGTG+TGG | 0.670479 | 5.4:+45591117 | MS.gene94067:CDS |
| ACAAGTTAGACTCCCAACAT+GGG | 0.676476 | 5.4:+45592249 | MS.gene94067:CDS |
| ATCTGCCCAGAAGTATTCTG+CGG | 0.677104 | 5.4:-45590380 | None:intergenic |
| ATGTTGTGAAGATTCACCCG+AGG | 0.718377 | 5.4:+45592307 | MS.gene94067:CDS |
| AAATGAGGAAGGTATCTCAG+AGG | 0.722350 | 5.4:-45590704 | None:intergenic |
| TCATTTGGAATAAAGAGACG+AGG | 0.736235 | 5.4:-45592378 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 45581055 | 45592400 | 45581055 | ID=MS.gene94067 |
| chr5.4 | mRNA | 45581055 | 45592400 | 45581055 | ID=MS.gene94067.t1;Parent=MS.gene94067 |
| chr5.4 | exon | 45581055 | 45581329 | 45581055 | ID=MS.gene94067.t1.exon1;Parent=MS.gene94067.t1 |
| chr5.4 | CDS | 45581055 | 45581329 | 45581055 | ID=cds.MS.gene94067.t1;Parent=MS.gene94067.t1 |
| chr5.4 | exon | 45582551 | 45582910 | 45582551 | ID=MS.gene94067.t1.exon2;Parent=MS.gene94067.t1 |
| chr5.4 | CDS | 45582551 | 45582910 | 45582551 | ID=cds.MS.gene94067.t1;Parent=MS.gene94067.t1 |
| chr5.4 | exon | 45589570 | 45589788 | 45589570 | ID=MS.gene94067.t1.exon3;Parent=MS.gene94067.t1 |
| chr5.4 | CDS | 45589570 | 45589788 | 45589570 | ID=cds.MS.gene94067.t1;Parent=MS.gene94067.t1 |
| chr5.4 | exon | 45589894 | 45591888 | 45589894 | ID=MS.gene94067.t1.exon4;Parent=MS.gene94067.t1 |
| chr5.4 | CDS | 45589894 | 45591888 | 45589894 | ID=cds.MS.gene94067.t1;Parent=MS.gene94067.t1 |
| chr5.4 | exon | 45592075 | 45592400 | 45592075 | ID=MS.gene94067.t1.exon5;Parent=MS.gene94067.t1 |
| chr5.4 | CDS | 45592075 | 45592400 | 45592075 | ID=cds.MS.gene94067.t1;Parent=MS.gene94067.t1 |
| Gene Sequence |
| Protein sequence |
