AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96811

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96811.t1 MTR_4g081410 90.326 858 31 1 6 811 133 990 0.0 1523
MS.gene96811.t1 MTR_4g081410 90.326 858 31 1 6 811 127 984 0.0 1523
MS.gene96811.t1 MTR_2g082190 67.262 504 141 9 311 801 358 850 0.0 670
MS.gene96811.t1 MTR_4g045670 59.074 540 185 9 286 809 336 855 0.0 570
MS.gene96811.t1 MTR_2g089040 56.466 549 209 6 264 801 300 829 0.0 554
MS.gene96811.t1 MTR_1g083260 50.367 409 193 5 356 761 496 897 4.01e-129 408
MS.gene96811.t1 MTR_4g095780 48.821 424 200 6 348 763 405 819 7.91e-125 395
MS.gene96811.t1 MTR_5g015690 50.114 437 194 11 330 757 443 864 2.93e-123 392
MS.gene96811.t1 MTR_8g027995 46.105 475 229 9 300 763 573 1031 2.54e-121 391
MS.gene96811.t1 MTR_4g087890 48.081 443 194 11 348 763 421 854 9.62e-119 380
MS.gene96811.t1 MTR_7g080920 47.912 455 208 12 312 757 531 965 2.11e-118 382
MS.gene96811.t1 MTR_5g036540 40.547 439 232 9 350 763 356 790 3.36e-92 307
MS.gene96811.t1 MTR_8g062830 37.471 435 245 10 351 763 303 732 1.32e-86 291
MS.gene96811.t1 MTR_3g078623 37.692 520 284 12 259 763 148 642 1.63e-76 262
MS.gene96811.t1 MTR_1g013800 23.576 509 320 11 293 784 1315 1771 6.20e-31 131
MS.gene96811.t1 MTR_4g131020 24.834 451 269 12 331 758 761 1164 1.11e-30 130
MS.gene96811.t1 MTR_4g131020 25.871 402 228 12 331 709 761 1115 1.25e-30 130
MS.gene96811.t1 MTR_3g037080 24.682 393 233 10 353 727 1504 1851 4.02e-28 122
MS.gene96811.t1 MTR_5g026645 24.070 511 328 11 287 781 722 1188 4.07e-26 115
MS.gene96811.t1 MTR_5g026645 24.070 511 328 11 287 781 737 1203 4.10e-26 115
MS.gene96811.t1 MTR_5g026645 25.094 530 332 12 273 781 544 1029 4.12e-25 112
MS.gene96811.t1 MTR_0094s0010 43.590 78 42 2 691 767 5 81 1.70e-13 67.0
MS.gene96811.t1 MTR_0094s0010 46.479 71 36 2 698 767 6 75 4.93e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96811.t1 AT5G54650 62.147 531 173 8 287 809 390 900 0.0 599
MS.gene96811.t1 AT5G54650 62.147 531 173 8 287 809 390 900 0.0 599
MS.gene96811.t1 AT3G05470 46.331 477 226 7 287 758 418 869 4.07e-120 384
MS.gene96811.t1 AT3G25500 46.154 481 229 11 286 757 532 991 1.90e-119 386
MS.gene96811.t1 AT2G43800 47.115 416 206 5 348 757 438 845 8.55e-114 367
MS.gene96811.t1 AT1G70140 41.324 438 230 9 346 765 294 722 6.11e-97 319
MS.gene96811.t1 AT1G59910 41.889 413 229 8 352 757 457 865 2.02e-90 305
MS.gene96811.t1 AT5G48360 39.947 378 178 10 389 759 447 782 5.38e-72 252
MS.gene96811.t1 AT3G07540 32.783 424 221 10 344 757 465 834 8.78e-52 195
MS.gene96811.t1 AT4G15200 55.612 196 67 5 296 490 286 462 2.55e-45 170
MS.gene96811.t1 AT4G15200 55.612 196 67 5 296 490 285 461 2.57e-45 170
MS.gene96811.t1 AT1G24150 42.056 214 116 3 355 564 310 519 1.37e-44 169
MS.gene96811.t1 AT5G07740 30.233 258 164 7 349 596 1216 1467 2.51e-29 126
MS.gene96811.t1 AT5G07740 30.233 258 164 7 349 596 1238 1489 2.90e-29 126
MS.gene96811.t1 AT5G58160 27.935 247 167 4 357 596 838 1080 4.10e-28 122
MS.gene96811.t1 AT1G31810 28.854 253 166 5 355 598 816 1063 4.50e-27 119
MS.gene96811.t1 AT1G31810 28.854 253 166 5 355 598 816 1063 4.50e-27 119
MS.gene96811.t1 AT4G15200 50.000 160 60 5 296 454 286 426 2.55e-26 113
MS.gene96811.t1 AT5G07770 27.393 303 191 8 353 640 187 475 3.90e-26 115
MS.gene96811.t1 AT5G07770 27.393 303 191 8 353 640 194 482 4.34e-26 115
MS.gene96811.t1 AT5G07770 27.393 303 191 8 353 640 53 341 2.25e-25 112
MS.gene96811.t1 AT5G07740 26.712 292 164 8 349 596 1238 1523 3.91e-24 109
MS.gene96811.t1 AT5G07770 27.046 281 177 7 375 640 181 448 9.28e-23 104
MS.gene96811.t1 AT2G25050 23.944 284 176 7 348 596 735 1013 2.06e-19 94.4
MS.gene96811.t1 AT3G32400 27.300 337 215 8 278 596 16 340 3.78e-18 89.0
MS.gene96811.t1 AT5G07760 23.567 314 196 6 399 706 498 773 5.49e-18 89.4
MS.gene96811.t1 AT5G07760 23.567 314 196 6 399 706 498 773 7.58e-18 89.0
MS.gene96811.t1 AT3G25493 43.836 73 39 1 687 757 41 113 2.95e-15 74.7
MS.gene96811.t1 AT5G07650 23.313 326 202 8 388 706 435 719 3.13e-15 80.5
MS.gene96811.t1 AT5G07780 27.273 176 125 2 424 596 144 319 3.53e-15 79.3
MS.gene96811.t1 AT5G07650 22.286 350 200 9 388 706 435 743 4.88e-12 70.1
MS.gene96811.t1 AT3G32400 26.590 346 216 10 274 597 8 337 7.48e-12 68.9

Find 241 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATGTCCACCATGGCTTTC+AGG 0.210313 4.3:+28652156 None:intergenic
CCAGATGGTGCTGGCGGTGG+TGG 0.231478 4.3:+28653034 None:intergenic
GCTGCTGGCGGTGTCAGTTT+TGG 0.240006 4.3:+28653876 None:intergenic
ACACGGCCTGGATTTCTTCT+AGG 0.243627 4.3:+28654086 None:intergenic
CTGCCTGGAGGAGGTCTTAA+AGG 0.243919 4.3:+28653361 None:intergenic
CCGCCTTCGTTTACACCTTT+TGG 0.247274 4.3:-28653316 MS.gene96811:CDS
CAGTCATCAAGTAATAATTT+AGG 0.250746 4.3:-28653505 MS.gene96811:CDS
TCAGCATTCTCTGTAGCTTT+TGG 0.257305 4.3:+28652923 None:intergenic
GGTCCTTCCAATCATGCTTT+TGG 0.263432 4.3:-28653559 MS.gene96811:CDS
AGAGGAGCTCACTACTACTA+TGG 0.295866 4.3:-28652084 MS.gene96811:CDS
TTCGGGCAATGGAGGGAGAC+TGG 0.301432 4.3:+28653980 None:intergenic
TATCGTCCTCAACATTCTTC+AGG 0.303241 4.3:+28650913 None:intergenic
CACAAGACCGTGGCCAAGTT+TGG 0.309150 4.3:+28650962 None:intergenic
TTGAAATTATCTGATGTAAA+AGG 0.312971 4.3:-28651230 MS.gene96811:CDS
TGATGGGGATAGGCTGGGTT+CGG 0.317278 4.3:+28653962 None:intergenic
CTTGAAGCTGTTCTCAAAAC+TGG 0.318506 4.3:-28651314 MS.gene96811:CDS
TGGATTTCTTCTAGGAATAC+TGG 0.328042 4.3:+28654094 None:intergenic
CGTATTTCCAAAAGCATGAT+TGG 0.340689 4.3:+28653552 None:intergenic
AGCGGGTGATGGGGATAGGC+TGG 0.346901 4.3:+28653956 None:intergenic
GATGGTGCTGGCGGTGGTGG+GGG 0.347519 4.3:+28653037 None:intergenic
ATTCAAATCAATCAATGGTT+TGG 0.349734 4.3:-28652826 MS.gene96811:CDS
TATATTGAGGTGAAGGGTCT+TGG 0.350584 4.3:+28652603 None:intergenic
GAAATGTCAGGTTGCTTGTA+AGG 0.359972 4.3:-28651369 MS.gene96811:intron
GGTTTGGCACCAGGTGGTGC+AGG 0.360892 4.3:+28653070 None:intergenic
CAGATGGTGCTGGCGGTGGT+GGG 0.363070 4.3:+28653035 None:intergenic
GGAGGAGCTCCACCACTCTT+AGG 0.365419 4.3:+28652977 None:intergenic
AGGCTGGGTTCGGGCAATGG+AGG 0.376157 4.3:+28653972 None:intergenic
CCACTAACCTTTAGGCCAAT+TGG 0.376409 4.3:+28652947 None:intergenic
GGTGACAAAGGAGGAGAAAT+AGG 0.376544 4.3:+28653912 None:intergenic
TTGGCACCAGGTGGTGCAGG+GGG 0.379963 4.3:+28653073 None:intergenic
GATGGGGATAGGCTGGGTTC+GGG 0.380378 4.3:+28653963 None:intergenic
GGTTTGGCACCAAGTGGTGC+AGG 0.381434 4.3:+28653115 None:intergenic
ATATCAGAACCACCTGGTTT+AGG 0.382133 4.3:-28654050 MS.gene96811:CDS
GATAGGCTGGGTTCGGGCAA+TGG 0.393581 4.3:+28653969 None:intergenic
AAGAATGTTGAGGACGATAG+AGG 0.394680 4.3:-28650909 MS.gene96811:CDS
ATTGATTGATTTGAATTAGC+TGG 0.395298 4.3:+28652833 None:intergenic
TTGGCACCAAGTGGTGCAGG+GGG 0.398419 4.3:+28653118 None:intergenic
CCTTCAAACCTTGTTGAAGA+TGG 0.399631 4.3:-28652255 MS.gene96811:CDS
CTCCATCTTCTGACACGAAC+GGG 0.400615 4.3:-28653836 MS.gene96811:CDS
CTGGAGCGGGTGATGGGGAT+AGG 0.402711 4.3:+28653952 None:intergenic
AGAGTGGGAACTATCCATTC+TGG 0.408801 4.3:-28653391 MS.gene96811:CDS
AGGTGAAGGGTCTTGGGAGG+AGG 0.412105 4.3:+28652610 None:intergenic
AGATGGTGCTGGCGGTGGTG+GGG 0.413538 4.3:+28653036 None:intergenic
ATTAGTGACATGCCATATCT+TGG 0.415267 4.3:+28654139 None:intergenic
AGCTAATTCAAATCAATCAA+TGG 0.415501 4.3:-28652831 MS.gene96811:CDS
ATATTGAGGTGAAGGGTCTT+GGG 0.422759 4.3:+28652604 None:intergenic
CAGGTGATGGTGTGAGACTC+GGG 0.429829 4.3:+28654006 None:intergenic
GAACAGCTTCAAGAAGTTTG+TGG 0.430295 4.3:+28651324 None:intergenic
TTTGGCACCAGGTGGTGCAG+GGG 0.433099 4.3:+28653072 None:intergenic
AAAGGAGGAGAAATAGGATT+AGG 0.433782 4.3:+28653918 None:intergenic
GTTTGGAATCAGATCAAATC+AGG 0.434148 4.3:-28652809 MS.gene96811:CDS
GGAGGACCGGGTTTGGCACC+AGG 0.435572 4.3:+28653061 None:intergenic
GAGGCGCTGGAGCGGGTGAT+GGG 0.437847 4.3:+28653946 None:intergenic
GTTTGGCACCAGGTGGTGCA+GGG 0.438893 4.3:+28653071 None:intergenic
GGGAGACTGGGTTCAGGTGA+TGG 0.438984 4.3:+28653993 None:intergenic
GCAGAAATGTCTGCAGCTGC+TGG 0.440090 4.3:+28653861 None:intergenic
GATATGGCATGTCACTAATA+CGG 0.440424 4.3:-28654135 MS.gene96811:CDS
AGAGGCGCTGGAGCGGGTGA+TGG 0.442056 4.3:+28653945 None:intergenic
TCAGGTGATGGTGTGAGACT+CGG 0.442832 4.3:+28654005 None:intergenic
CTCCTTCTGCCGTTGACCAT+TGG 0.444758 4.3:+28652637 None:intergenic
GGTTTGGCACCAGGTGGAGC+AGG 0.448523 4.3:+28653154 None:intergenic
TTCCCGTTCGTGTCAGAAGA+TGG 0.449953 4.3:+28653834 None:intergenic
AATGCTGGATAAAGTATGTA+AGG 0.452129 4.3:-28650712 MS.gene96811:CDS
ACAGCAACTGCTGCCAAACT+TGG 0.453608 4.3:-28650975 MS.gene96811:CDS
TGTGGTGGTGAAGGAGTAGT+AGG 0.455412 4.3:+28653226 None:intergenic
AGTGGAGGGCGAGGAGGAAC+AGG 0.456131 4.3:+28653181 None:intergenic
CCAATTGGCCTAAAGGTTAG+TGG 0.456215 4.3:-28652947 MS.gene96811:CDS
GCTCCTCCTCGACCTCCAAT+TGG 0.457683 4.3:-28652962 MS.gene96811:CDS
GCAGGGTGTAGTGGAGGGCG+AGG 0.460761 4.3:+28653172 None:intergenic
GGAGGAGGTGGACGAGGACC+AGG 0.461446 4.3:+28653004 None:intergenic
CCTCCTCCTCCTCGACAGTC+TGG 0.462302 4.3:-28653268 MS.gene96811:CDS
AGGGCGAGGAGGAACAGGTT+TGG 0.462316 4.3:+28653186 None:intergenic
CCACCACCGCCAGCACCATC+TGG 0.462467 4.3:-28653034 MS.gene96811:CDS
TATTTCTCCTCCTTTGTCAC+CGG 0.468360 4.3:-28653910 MS.gene96811:CDS
AATGGCGATCTGTCTCAACT+TGG 0.469986 4.3:-28652194 MS.gene96811:CDS
CCAGGTGGAGCAGGGTGTAG+TGG 0.470247 4.3:+28653163 None:intergenic
GGATTAGGAAGTAGAGGCGC+TGG 0.470655 4.3:+28653933 None:intergenic
CCACTACACCCTGCTCCACC+TGG 0.471440 4.3:-28653163 MS.gene96811:CDS
AAGAGGATGATTCCAAGATA+TGG 0.473310 4.3:-28654151 MS.gene96811:CDS
AGCTGGAGCAAAACACGGCC+TGG 0.476378 4.3:+28654074 None:intergenic
GGAGGAGGAGGAGGTGGACG+AGG 0.476559 4.3:+28652998 None:intergenic
GAGCTTGCTAATGTTAAAAG+AGG 0.476648 4.3:-28651023 MS.gene96811:CDS
GGAGGACTAGGTTTGGCACC+AGG 0.477585 4.3:+28653145 None:intergenic
TCGACCTCCAATTGGCCTAA+AGG 0.477629 4.3:-28652954 MS.gene96811:CDS
CCATCTTCAACAAGGTTTGA+AGG 0.481397 4.3:+28652255 None:intergenic
GGAGGAGGATTCAATTCAAA+TGG 0.482443 4.3:+28653418 None:intergenic
GGGGTAGGTGATCCAACTGC+GGG 0.483728 4.3:+28654026 None:intergenic
AATGGAGGGAGACTGGGTTC+AGG 0.483769 4.3:+28653987 None:intergenic
ATCCTCCTTTCAGCTATAGC+TGG 0.485588 4.3:+28650576 None:intergenic
GGGTGGTGGAGGACTAGGTT+TGG 0.487566 4.3:+28653138 None:intergenic
TTTGAATTGAATCCTCCTCC+TGG 0.489661 4.3:-28653415 MS.gene96811:CDS
TGAGAAGAAAATCATGGCTC+TGG 0.489915 4.3:-28650820 MS.gene96811:CDS
AAGAGACTTCTTGATAATGC+TGG 0.489977 4.3:-28650727 MS.gene96811:CDS
GGGAATGCTGCGAAGGATGA+TGG 0.490591 4.3:-28650771 MS.gene96811:CDS
AGCACGGGCGATTACTTTCA+CGG 0.491716 4.3:-28650792 MS.gene96811:CDS
CCACCATGGCTTTCAGGAAA+CGG 0.491880 4.3:+28652162 None:intergenic
AGAAGGTGATGGGCGTGTAT+CGG 0.493216 4.3:+28650620 None:intergenic
GCACCAGATGGTGCTGGCGG+TGG 0.493511 4.3:+28653031 None:intergenic
TCCCTCTGCGTTTAAGCGAA+TGG 0.494568 4.3:-28652135 MS.gene96811:CDS
GTTTGGCACCAAGTGGTGCA+GGG 0.494911 4.3:+28653116 None:intergenic
GGAAGTAGAGGCGCTGGAGC+GGG 0.496495 4.3:+28653939 None:intergenic
GTGTAAACGAAGGCGGCTCA+TGG 0.497349 4.3:+28653323 None:intergenic
ATCTGGATATATTGAGGTGA+AGG 0.497544 4.3:+28652596 None:intergenic
AAGTTTGTCTAATATTAAAA+CGG 0.498224 4.3:-28651114 MS.gene96811:CDS
AGGCGCTGGAGCGGGTGATG+GGG 0.502861 4.3:+28653947 None:intergenic
GCGGGTGATGGGGATAGGCT+GGG 0.507685 4.3:+28653957 None:intergenic
GCACCACTTGGTGCCAAACC+CGG 0.507883 4.3:-28653112 MS.gene96811:CDS
CAAGAAGTTTGTGGAACAGC+CGG 0.508507 4.3:+28651333 None:intergenic
GGAAGAGGATTCATCCTGCC+TGG 0.509754 4.3:+28653346 None:intergenic
TCGACGATCTGGATATATTG+AGG 0.513039 4.3:+28652590 None:intergenic
AGCAGTTGCTGTTAAGCTGT+CGG 0.513377 4.3:+28650986 None:intergenic
CAAGACCAAGCTCGCGATAG+TGG 0.515198 4.3:+28651069 None:intergenic
GCTTTCAGGAAACGGTCAGC+AGG 0.515256 4.3:+28652170 None:intergenic
GTTGCAAGTTTCATGACTGC+AGG 0.518762 4.3:-28654411 None:intergenic
GGTATGTTCCATCGTTCATA+CGG 0.518763 4.3:+28651288 None:intergenic
ACGACAAAAGGGGAGAAGCT+TGG 0.521530 4.3:-28653532 MS.gene96811:CDS
TGTAAACGAAGGCGGCTCAT+GGG 0.522295 4.3:+28653324 None:intergenic
CCAACTGCGGGGCCTAAACC+AGG 0.522943 4.3:+28654038 None:intergenic
GGATTCATCCTGCCTGGAGG+AGG 0.523494 4.3:+28653352 None:intergenic
TCTTCTAGGAATACTGGATG+TGG 0.524707 4.3:+28654100 None:intergenic
GCACCACCTGGTGCCAAACC+CGG 0.528215 4.3:-28653067 MS.gene96811:CDS
CCACCACTCTTAGGAGGAGG+AGG 0.528417 4.3:+28652986 None:intergenic
TCGCGAGCTTGGTCTTGAGA+TGG 0.530563 4.3:-28651063 MS.gene96811:CDS
GAAGACCACTATCGCGAGCT+TGG 0.531023 4.3:-28651074 MS.gene96811:CDS
GCACCATCTGGTGCTAAACC+TGG 0.531028 4.3:-28653022 MS.gene96811:CDS
TCGGGCAATGGAGGGAGACT+GGG 0.531046 4.3:+28653981 None:intergenic
AATGCTGAAGCAGGTGCAGA+AGG 0.533724 4.3:-28652908 MS.gene96811:CDS
GTGGAGCAGGGTGTAGTGGA+GGG 0.533864 4.3:+28653167 None:intergenic
ACACCAGACTGTCGAGGAGG+AGG 0.533874 4.3:+28653265 None:intergenic
TTTGGCACCAAGTGGTGCAG+GGG 0.533875 4.3:+28653117 None:intergenic
AGGAAGTAGAGGCGCTGGAG+CGG 0.535058 4.3:+28653938 None:intergenic
ATATGGCATGTCACTAATAC+GGG 0.535067 4.3:-28654134 MS.gene96811:CDS
CAGGTGGTTCTGATATGAGC+TGG 0.536634 4.3:+28654057 None:intergenic
GGTGGAGCAGGGTGTAGTGG+AGG 0.537361 4.3:+28653166 None:intergenic
TCCATTCGCTTAAACGCAGA+GGG 0.538295 4.3:+28652134 None:intergenic
TGACGAAAATCAGAAGGTGA+TGG 0.540226 4.3:+28650609 None:intergenic
GCTACAGAGAATGCTGAAGC+AGG 0.540879 4.3:-28652917 MS.gene96811:CDS
GGCTGGGTTCGGGCAATGGA+GGG 0.542357 4.3:+28653973 None:intergenic
TTTAGGCCAATTGGAGGTCG+AGG 0.542918 4.3:+28652956 None:intergenic
GAATCCTCCTCCTGGGAGAG+TGG 0.544001 4.3:-28653407 MS.gene96811:CDS
GTTTGTGATGCACTTTATGA+AGG 0.544465 4.3:-28652506 MS.gene96811:intron
ATGGCTCTGGTGAAGAGCAC+GGG 0.545130 4.3:-28650807 MS.gene96811:CDS
CTTTCACGGGAATGCTGCGA+AGG 0.546173 4.3:-28650778 MS.gene96811:CDS
GGTTTAGCACCAGATGGTGC+TGG 0.548821 4.3:+28653025 None:intergenic
GGGTGTAGTGGAGGGCGAGG+AGG 0.548938 4.3:+28653175 None:intergenic
TGGATAGTTCCCACTCTCCC+AGG 0.550191 4.3:+28653397 None:intergenic
CCTGGTTTAGGCCCCGCAGT+TGG 0.550746 4.3:-28654038 MS.gene96811:CDS
GTTTGGCACCAGGTGGAGCA+GGG 0.551572 4.3:+28653155 None:intergenic
TGAAGATGAGAAGAAAATCA+TGG 0.553044 4.3:-28650826 MS.gene96811:CDS
ATGGCGATCTGTCTCAACTT+GGG 0.553072 4.3:-28652193 MS.gene96811:CDS
CTTTAAGACCTCCTCCAGGC+AGG 0.553261 4.3:-28653360 MS.gene96811:CDS
GAAGGCGGCTCATGGGGAAG+AGG 0.554110 4.3:+28653331 None:intergenic
CCTCCTCCTCCTAAGAGTGG+TGG 0.555072 4.3:-28652986 MS.gene96811:CDS
CTAACCTTTAGGCCAATTGG+AGG 0.556575 4.3:+28652950 None:intergenic
TTGAATTGAATCCTCCTCCT+GGG 0.557209 4.3:-28653414 MS.gene96811:CDS
GACGAAAATCAGAAGGTGAT+GGG 0.557273 4.3:+28650610 None:intergenic
GAGACGACAGTATTACCAAA+AGG 0.558989 4.3:+28653301 None:intergenic
CAAGAGATTATCCGCTCTGA+GGG 0.561932 4.3:-28651170 MS.gene96811:CDS
CATGGCTCTGGTGAAGAGCA+CGG 0.562048 4.3:-28650808 MS.gene96811:CDS
TTAAGTTCTTCGTCTGATGT+CGG 0.563214 4.3:+28652230 None:intergenic
CCACTCTTAGGAGGAGGAGG+AGG 0.563379 4.3:+28652989 None:intergenic
GTTCCCACTCTCCCAGGAGG+AGG 0.563679 4.3:+28653403 None:intergenic
GAAATAGGATTAGGAAGTAG+AGG 0.564232 4.3:+28653927 None:intergenic
AGTATTCCTAGAAGAAATCC+AGG 0.564318 4.3:-28654092 MS.gene96811:CDS
CCACCACAATCAATACTAGC+TGG 0.565760 4.3:-28653211 MS.gene96811:CDS
GACCAATGGTCAACGGCAGA+AGG 0.568527 4.3:-28652639 MS.gene96811:CDS
AATCCTCCTCCTGGGAGAGT+GGG 0.569029 4.3:-28653406 MS.gene96811:CDS
CCAGACTGTCGAGGAGGAGG+AGG 0.569086 4.3:+28653268 None:intergenic
GCACGGGCGATTACTTTCAC+GGG 0.572404 4.3:-28650791 MS.gene96811:CDS
GTAAGGAACTAAGAAACAGC+CGG 0.573002 4.3:-28651352 MS.gene96811:CDS
GAAATGTCTGCAGCTGCTGG+CGG 0.574329 4.3:+28653864 None:intergenic
GCTCCACCACTCTTAGGAGG+AGG 0.581787 4.3:+28652983 None:intergenic
CCTCCATCTTCTGACACGAA+CGG 0.582016 4.3:-28653837 MS.gene96811:CDS
CGGGGTAGGTGATCCAACTG+CGG 0.584611 4.3:+28654025 None:intergenic
CTGCAAGGAAATCAATCGAT+GGG 0.586296 4.3:-28653463 MS.gene96811:CDS
AGAATGTTGAGGACGATAGA+GGG 0.587583 4.3:-28650908 MS.gene96811:CDS
AGTATTGATTGTGGTGGTGA+AGG 0.589299 4.3:+28653217 None:intergenic
TTTCCAAAAGCATGATTGGA+AGG 0.590426 4.3:+28653556 None:intergenic
TTGAGGTGAAGGGTCTTGGG+AGG 0.592444 4.3:+28652607 None:intergenic
GCACCAGCTAGTATTGATTG+TGG 0.593120 4.3:+28653208 None:intergenic
CCACCTTTAAGACCTCCTCC+AGG 0.593593 4.3:-28653364 MS.gene96811:CDS
TTCAGACGAGGAGAGTCCAT+AGG 0.595433 4.3:-28650541 None:intergenic
AACAAGAAGACCTCACTGCA+AGG 0.596038 4.3:-28653478 MS.gene96811:CDS
ACTGCTGCCAAACTTGGCCA+CGG 0.599565 4.3:-28650969 MS.gene96811:CDS
AGTTTCATGACTGCAGGCAA+AGG 0.599638 4.3:-28654405 None:intergenic
GGAGCTCCACCACTCTTAGG+AGG 0.601332 4.3:+28652980 None:intergenic
GGTGGTGAAGGAGTAGTAGG+AGG 0.601605 4.3:+28653229 None:intergenic
ACTGCAAGGAAATCAATCGA+TGG 0.603881 4.3:-28653464 MS.gene96811:CDS
GTAAACGAAGGCGGCTCATG+GGG 0.604293 4.3:+28653325 None:intergenic
ATCTTCTGACACGAACGGGA+AGG 0.605783 4.3:-28653832 MS.gene96811:CDS
GCTGAAGCAGGTGCAGAAGG+TGG 0.605872 4.3:-28652905 MS.gene96811:CDS
TCATACCTCTAAAACTGCAA+AGG 0.606128 4.3:+28652058 None:intergenic
TTCCAGCTATAGCTGAAAGG+AGG 0.608360 4.3:-28650578 MS.gene96811:CDS
AAGGTTTGAAGGAATTCTGA+CGG 0.614363 4.3:+28652266 None:intergenic
TGACCGTTTCCTGAAAGCCA+TGG 0.615549 4.3:-28652165 MS.gene96811:CDS
TCTGGATATATTGAGGTGAA+GGG 0.618913 4.3:+28652597 None:intergenic
CCTGGAGGAGGTCTTAAAGG+TGG 0.621401 4.3:+28653364 None:intergenic
TTAAAGGTGGAATTCCAGAA+TGG 0.621588 4.3:+28653377 None:intergenic
AGCCGCTGACGAAAATCAGA+AGG 0.621884 4.3:+28650603 None:intergenic
TGAATAAGACCAATGGTCAA+CGG 0.624150 4.3:-28652646 MS.gene96811:CDS
ATTACATGTCTTAGGCGAAG+AGG 0.625916 4.3:-28654168 MS.gene96811:intron
ACTGGTAACCGTATGAACGA+TGG 0.628161 4.3:-28651296 MS.gene96811:CDS
TCTGATGTAAAAGGAACAGA+CGG 0.628502 4.3:-28651221 MS.gene96811:CDS
CCGTTTCCTGAAAGCCATGG+TGG 0.628940 4.3:-28652162 MS.gene96811:CDS
CAGCTCATATCAGAACCACC+TGG 0.629581 4.3:-28654056 MS.gene96811:CDS
AATGAGGCCGGTGACAAAGG+AGG 0.630045 4.3:+28653903 None:intergenic
TTCCATTCGCTTAAACGCAG+AGG 0.632346 4.3:+28652133 None:intergenic
CGATTGATTTCCTTGCAGTG+AGG 0.632581 4.3:+28653468 None:intergenic
AATGCTGTGAATAAGACCAA+TGG 0.632825 4.3:-28652653 MS.gene96811:CDS
TAGAGGGTTTCGTGAGACAG+TGG 0.633714 4.3:-28650892 MS.gene96811:CDS
TCAAGAGATTATCCGCTCTG+AGG 0.635223 4.3:-28651171 MS.gene96811:CDS
GGGCGTGTATCGGACGAAGA+CGG 0.635897 4.3:+28650630 None:intergenic
ATATGAGCTGGAGCAAAACA+CGG 0.635980 4.3:+28654069 None:intergenic
TGTCGGTGCCATCTTCAACA+AGG 0.636676 4.3:+28652247 None:intergenic
GGGCATAAAAGCTGCTCGAG+CGG 0.637404 4.3:-28651150 MS.gene96811:CDS
GGACCGGGTTTGGCACCAGG+TGG 0.640127 4.3:+28653064 None:intergenic
GATGGTGTGAGACTCGGGGT+AGG 0.649770 4.3:+28654011 None:intergenic
GGACTAGGTTTGGCACCAGG+TGG 0.652043 4.3:+28653148 None:intergenic
GGACCAGGTTTAGCACCAGA+TGG 0.653890 4.3:+28653019 None:intergenic
AGGCCAATTGGAGGTCGAGG+AGG 0.654362 4.3:+28652959 None:intergenic
TTAGCACCAGATGGTGCTGG+CGG 0.655065 4.3:+28653028 None:intergenic
CCAAAAGGTGTAAACGAAGG+CGG 0.656548 4.3:+28653316 None:intergenic
AGGTGATGGTGTGAGACTCG+GGG 0.658138 4.3:+28654007 None:intergenic
GGACCGGGTTTGGCACCAAG+TGG 0.661371 4.3:+28653109 None:intergenic
AGATTATGTTAGTTCAGACG+AGG 0.662395 4.3:-28650553 MS.gene96811:CDS
CTAGCAACACCAGACTGTCG+AGG 0.667233 4.3:+28653259 None:intergenic
CTTTGGCTTTCACAAGACCG+TGG 0.668586 4.3:+28650952 None:intergenic
CCGTTCGTGTCAGAAGATGG+AGG 0.676411 4.3:+28653837 None:intergenic
TAAATGCTTGTGCACCACCA+CGG 0.677817 4.3:+28651267 None:intergenic
GGGTAGGTGATCCAACTGCG+GGG 0.687109 4.3:+28654027 None:intergenic
CGCAGAGGGAATGTCCACCA+TGG 0.687791 4.3:+28652148 None:intergenic
CCAGCTAGTATTGATTGTGG+TGG 0.688825 4.3:+28653211 None:intergenic
AGAGGATTCATCCTGCCTGG+AGG 0.702096 4.3:+28653349 None:intergenic
GCAACACCAGACTGTCGAGG+AGG 0.702662 4.3:+28653262 None:intergenic
ATGAACGATGGAACATACCG+TGG 0.706065 4.3:-28651284 MS.gene96811:CDS
GCGCGCATTGAACGTGACGA+TGG 0.709406 4.3:-28652534 MS.gene96811:CDS
TTACCAAAAGGTGTAAACGA+AGG 0.710378 4.3:+28653313 None:intergenic
ATAGTTCCCACTCTCCCAGG+AGG 0.719091 4.3:+28653400 None:intergenic
ACTGCGGGGCCTAAACCAGG+TGG 0.727928 4.3:+28654041 None:intergenic
AACGATGGAACATACCGTGG+TGG 0.745719 4.3:-28651281 MS.gene96811:CDS
ATAAAACAAGAAACTTCACG+AGG 0.777985 4.3:-28650654 MS.gene96811:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTTGTCTAATATTAAAA+CGG - chr4.3:28653827-28653846 MS.gene96811:CDS 15.0%
!! ATTTAGAAGCAAAATTATTT+AGG - chr4.3:28652588-28652607 MS.gene96811:CDS 15.0%
!!! AACAAAATAATTTTTGGATT+TGG + chr4.3:28652174-28652193 None:intergenic 15.0%
!!! TTTTAATATTAGACAAACTT+TGG + chr4.3:28653827-28653846 None:intergenic 15.0%
!!! TTTTATTCATTTAAAGAAAG+AGG - chr4.3:28650584-28650603 MS.gene96811:CDS 15.0%
!! AATAATAAGTGTCAATTTAG+TGG + chr4.3:28653140-28653159 None:intergenic 20.0%
!! AATATACTTACACAAAAACA+GGG - chr4.3:28653028-28653047 MS.gene96811:CDS 20.0%
!! TTCTGTAGTTATAACTATAT+CGG - chr4.3:28651166-28651185 MS.gene96811:CDS 20.0%
!! TTGAAATTATCTGATGTAAA+AGG - chr4.3:28653711-28653730 MS.gene96811:intron 20.0%
!!! AAAAATTATTTTGTTGAGCA+TGG - chr4.3:28652179-28652198 MS.gene96811:CDS 20.0%
!!! ACATTGTAAATCAGTTTTAA+TGG - chr4.3:28653470-28653489 MS.gene96811:CDS 20.0%
!!! ATGCTCAACAAAATAATTTT+TGG + chr4.3:28652180-28652199 None:intergenic 20.0%
!!! GTTTTTGTTTAGTATATCTT+TGG + chr4.3:28654009-28654028 None:intergenic 20.0%
!!! TATAATTCATTTGAAATGTC+AGG - chr4.3:28653560-28653579 MS.gene96811:CDS 20.0%
!!! TTTTATGTGTACATTTAAAG+AGG - chr4.3:28652839-28652858 MS.gene96811:CDS 20.0%
! AAACTAAGTTATTCCTTGTT+TGG - chr4.3:28652530-28652549 MS.gene96811:CDS 25.0%
! AAATTGCTGATAACTGTAAT+AGG - chr4.3:28652487-28652506 MS.gene96811:intron 25.0%
! AACCTATCAAATTGTCATTA+AGG + chr4.3:28652234-28652253 None:intergenic 25.0%
! AATCTTCTATTACATGTCTT+AGG - chr4.3:28650765-28650784 MS.gene96811:CDS 25.0%
! AATTGCTGATAACTGTAATA+GGG - chr4.3:28652488-28652507 MS.gene96811:intron 25.0%
! AGCTAATTCAAATCAATCAA+TGG - chr4.3:28652110-28652129 MS.gene96811:CDS 25.0%
! ATAACTGTAATAGGGATATT+AGG - chr4.3:28652496-28652515 MS.gene96811:intron 25.0%
! ATGTAAATCAGATCATAGAA+TGG - chr4.3:28652986-28653005 MS.gene96811:CDS 25.0%
! ATTCAAATCAATCAATGGTT+TGG - chr4.3:28652115-28652134 MS.gene96811:CDS 25.0%
! CAGTCATCAAGTAATAATTT+AGG - chr4.3:28651436-28651455 MS.gene96811:intron 25.0%
! GAATATACTTACACAAAAAC+AGG - chr4.3:28653027-28653046 MS.gene96811:CDS 25.0%
! TTCAAATGAATTATAGTGAG+AGG + chr4.3:28653555-28653574 None:intergenic 25.0%
! TTCCTTAATGACAATTTGAT+AGG - chr4.3:28652229-28652248 MS.gene96811:CDS 25.0%
!! CTTAAGCTTAGACTTTTTAA+TGG - chr4.3:28652729-28652748 MS.gene96811:intron 25.0%
!!! ATTGATTGATTTGAATTAGC+TGG + chr4.3:28652111-28652130 None:intergenic 25.0%
!!! CAACTGTTGTTTTATTACTA+TGG + chr4.3:28651142-28651161 None:intergenic 25.0%
AATAAAATCTTCACAGCAAG+TGG + chr4.3:28650571-28650590 None:intergenic 30.0%
AATGCTGGATAAAGTATGTA+AGG - chr4.3:28654229-28654248 MS.gene96811:intron 30.0%
ACAGTTATCAGCAATTTCTT+GGG + chr4.3:28652484-28652503 None:intergenic 30.0%
ATAAAACAAGAAACTTCACG+AGG - chr4.3:28654287-28654306 MS.gene96811:intron 30.0%
ATAAGTGTCAATTTAGTGGT+TGG + chr4.3:28653136-28653155 None:intergenic 30.0%
ATGTGTATATCTTACCATGT+AGG + chr4.3:28653273-28653292 None:intergenic 30.0%
TACAGTTATCAGCAATTTCT+TGG + chr4.3:28652485-28652504 None:intergenic 30.0%
TGAAGATGAGAAGAAAATCA+TGG - chr4.3:28654115-28654134 MS.gene96811:CDS 30.0%
TTCAATCAGTAAACCAAACA+AGG + chr4.3:28652546-28652565 None:intergenic 30.0%
! AGAAAGATTTCCTTGATTTG+AGG + chr4.3:28650726-28650745 None:intergenic 30.0%
! AGCATGAATGACTATTCTTT+TGG - chr4.3:28651278-28651297 MS.gene96811:CDS 30.0%
! GTTCTTTTTATGCTTTCGTA+AGG - chr4.3:28651211-28651230 MS.gene96811:CDS 30.0%
!! CTTTTGGAAATACGACAAAA+GGG - chr4.3:28651398-28651417 MS.gene96811:intron 30.0%
!! GTAAATCAGTTTTAATGGTG+AGG - chr4.3:28653475-28653494 MS.gene96811:CDS 30.0%
!! TGACATTGACTTTATTGTAC+AGG - chr4.3:28651361-28651380 MS.gene96811:CDS 30.0%
!! TTTTGGAAATACGACAAAAG+GGG - chr4.3:28651399-28651418 MS.gene96811:intron 30.0%
!!! CAAACTAAAGCCATTTTTCT+GGG - chr4.3:28652077-28652096 MS.gene96811:CDS 30.0%
!!! CGTGAAGTTTCTTGTTTTAT+AGG + chr4.3:28654287-28654306 None:intergenic 30.0%
!!! TCTTGTTTTATAGGTTTTGC+TGG + chr4.3:28654278-28654297 None:intergenic 30.0%
!!! TGGTGCACTTTTAAAATCAA+TGG + chr4.3:28653434-28653453 None:intergenic 30.0%
AAAGGAGGAGAAATAGGATT+AGG + chr4.3:28651026-28651045 None:intergenic 35.0%
AAATCAGGATCATTCCAGTA+AGG - chr4.3:28652147-28652166 MS.gene96811:CDS 35.0%
AAGAGGATGATTCCAAGATA+TGG - chr4.3:28650790-28650809 MS.gene96811:CDS 35.0%
AAGGTTTGAAGGAATTCTGA+CGG + chr4.3:28652678-28652697 None:intergenic 35.0%
AATGCTGTGAATAAGACCAA+TGG - chr4.3:28652288-28652307 MS.gene96811:intron 35.0%
AGATTATGTTAGTTCAGACG+AGG - chr4.3:28654388-28654407 MS.gene96811:intron 35.0%
AGTATTCCTAGAAGAAATCC+AGG - chr4.3:28650849-28650868 MS.gene96811:CDS 35.0%
ATATGGCATGTCACTAATAC+GGG - chr4.3:28650807-28650826 MS.gene96811:CDS 35.0%
ATCTGGATATATTGAGGTGA+AGG + chr4.3:28652348-28652367 None:intergenic 35.0%
ATTAGTGACATGCCATATCT+TGG + chr4.3:28650805-28650824 None:intergenic 35.0%
CAAAAACCTGAAGAATGTTG+AGG - chr4.3:28654022-28654041 MS.gene96811:CDS 35.0%
GAAATAGGATTAGGAAGTAG+AGG + chr4.3:28651017-28651036 None:intergenic 35.0%
GATATGGCATGTCACTAATA+CGG - chr4.3:28650806-28650825 MS.gene96811:CDS 35.0%
GTTTGTGATGCACTTTATGA+AGG - chr4.3:28652435-28652454 MS.gene96811:intron 35.0%
TATATCTTACCATGTAGGCA+CGG + chr4.3:28653268-28653287 None:intergenic 35.0%
TCTGATGTAAAAGGAACAGA+CGG - chr4.3:28653720-28653739 MS.gene96811:intron 35.0%
TCTGGATATATTGAGGTGAA+GGG + chr4.3:28652347-28652366 None:intergenic 35.0%
TGAATAAGACCAATGGTCAA+CGG - chr4.3:28652295-28652314 MS.gene96811:intron 35.0%
TGGTTAGAAAGACATCATAC+AGG + chr4.3:28652628-28652647 None:intergenic 35.0%
TTAAAGGTGGAATTCCAGAA+TGG + chr4.3:28651567-28651586 None:intergenic 35.0%
TTAAGTTCTTCGTCTGATGT+CGG + chr4.3:28652714-28652733 None:intergenic 35.0%
TTAGAAAGACATCATACAGG+TGG + chr4.3:28652625-28652644 None:intergenic 35.0%
TTGCTCATGCTCTTTCTAAT+CGG - chr4.3:28652934-28652953 MS.gene96811:CDS 35.0%
! AGATTTCCTTGATTTGAGGA+TGG + chr4.3:28650722-28650741 None:intergenic 35.0%
! CGTATTTCCAAAAGCATGAT+TGG + chr4.3:28651392-28651411 None:intergenic 35.0%
! GAGATGATAGAGACACTTTT+TGG - chr4.3:28652261-28652280 MS.gene96811:CDS 35.0%
! GGCAAGCATTAAGCAATTTT+TGG + chr4.3:28650701-28650720 None:intergenic 35.0%
! GTTTGGAATCAGATCAAATC+AGG - chr4.3:28652132-28652151 MS.gene96811:CDS 35.0%
! TCTCATCATTTTGTCTAAGC+CGG + chr4.3:28651241-28651260 None:intergenic 35.0%
! TGGATTTCTTCTAGGAATAC+TGG + chr4.3:28650850-28650869 None:intergenic 35.0%
! TTACCAAAAGGTGTAAACGA+AGG + chr4.3:28651631-28651650 None:intergenic 35.0%
! TTTCCAAAAGCATGATTGGA+AGG + chr4.3:28651388-28651407 None:intergenic 35.0%
! TTTTTATGCTTTCGTAAGGC+TGG - chr4.3:28651215-28651234 MS.gene96811:CDS 35.0%
! TTTTTCCAGCTATAGCTGAA+AGG - chr4.3:28654360-28654379 MS.gene96811:intron 35.0%
!! AAGAGACTTCTTGATAATGC+TGG - chr4.3:28654214-28654233 MS.gene96811:intron 35.0%
!! CCAGAAAAATGGCTTTAGTT+TGG + chr4.3:28652079-28652098 None:intergenic 35.0%
!! GAGCTTGCTAATGTTAAAAG+AGG - chr4.3:28653918-28653937 MS.gene96811:CDS 35.0%
!! GCTTTTGGAAATACGACAAA+AGG - chr4.3:28651397-28651416 MS.gene96811:intron 35.0%
!! TCATACCTCTAAAACTGCAA+AGG + chr4.3:28652886-28652905 None:intergenic 35.0%
!! TTTTTGGATTTGGTCCTTAC+TGG + chr4.3:28652164-28652183 None:intergenic 35.0%
!!! AAAGCCATTTTTCTGGGATA+AGG - chr4.3:28652083-28652102 MS.gene96811:CDS 35.0%
!!! CCAAACTAAAGCCATTTTTC+TGG - chr4.3:28652076-28652095 MS.gene96811:CDS 35.0%
!!! TGTCAGTTTTGGGAAAAATG+AGG + chr4.3:28651057-28651076 None:intergenic 35.0%
AAAGAGAATACGTGCCTACA+TGG - chr4.3:28653329-28653348 MS.gene96811:CDS 40.0%
AAGAATGTTGAGGACGATAG+AGG - chr4.3:28654032-28654051 MS.gene96811:CDS 40.0%
ACTGCAAGGAAATCAATCGA+TGG - chr4.3:28651477-28651496 MS.gene96811:intron 40.0%
AGAATGTTGAGGACGATAGA+GGG - chr4.3:28654033-28654052 MS.gene96811:CDS 40.0%
ATATCAGAACCACCTGGTTT+AGG - chr4.3:28650891-28650910 MS.gene96811:CDS 40.0%
ATATGAGCTGGAGCAAAACA+CGG + chr4.3:28650875-28650894 None:intergenic 40.0%
ATATTGAGGTGAAGGGTCTT+GGG + chr4.3:28652340-28652359 None:intergenic 40.0%
ATGTCTTTCTAACCAGTCGT+TGG - chr4.3:28652633-28652652 MS.gene96811:CDS 40.0%
ATGTTCACCAGCATTTCGAA+TGG + chr4.3:28653454-28653473 None:intergenic 40.0%
ATTACATGTCTTAGGCGAAG+AGG - chr4.3:28650773-28650792 MS.gene96811:CDS 40.0%
CAATTTCTTGGGCAAACTGA+AGG + chr4.3:28652473-28652492 None:intergenic 40.0%
CACCAATAAAGTCAGTTCCA+CGG - chr4.3:28650650-28650669 MS.gene96811:CDS 40.0%
CCATCTTCAACAAGGTTTGA+AGG + chr4.3:28652689-28652708 None:intergenic 40.0%
CCTTCAAACCTTGTTGAAGA+TGG - chr4.3:28652686-28652705 MS.gene96811:CDS 40.0%
CTGCAAGGAAATCAATCGAT+GGG - chr4.3:28651478-28651497 MS.gene96811:intron 40.0%
CTTGAAGCTGTTCTCAAAAC+TGG - chr4.3:28653627-28653646 MS.gene96811:intron 40.0%
GAACAGCTTCAAGAAGTTTG+TGG + chr4.3:28653620-28653639 None:intergenic 40.0%
GACGAAAATCAGAAGGTGAT+GGG + chr4.3:28654334-28654353 None:intergenic 40.0%
GAGACGACAGTATTACCAAA+AGG + chr4.3:28651643-28651662 None:intergenic 40.0%
GGAACCTTATCCCAGAAAAA+TGG + chr4.3:28652090-28652109 None:intergenic 40.0%
GGAGGAGGATTCAATTCAAA+TGG + chr4.3:28651526-28651545 None:intergenic 40.0%
GGCTTAGACAAAATGATGAG+AGG - chr4.3:28651240-28651259 MS.gene96811:CDS 40.0%
GGTATGTTCCATCGTTCATA+CGG + chr4.3:28653656-28653675 None:intergenic 40.0%
GTAAGGAACTAAGAAACAGC+CGG - chr4.3:28653589-28653608 MS.gene96811:intron 40.0%
TATATTGAGGTGAAGGGTCT+TGG + chr4.3:28652341-28652360 None:intergenic 40.0%
TATCGTCCTCAACATTCTTC+AGG + chr4.3:28654031-28654050 None:intergenic 40.0%
TATTTCTCCTCCTTTGTCAC+CGG - chr4.3:28651031-28651050 MS.gene96811:CDS 40.0%
TCATGATTTATGCCTCCTAC+TGG - chr4.3:28650614-28650633 MS.gene96811:CDS 40.0%
TCGACGATCTGGATATATTG+AGG + chr4.3:28652354-28652373 None:intergenic 40.0%
TGACGAAAATCAGAAGGTGA+TGG + chr4.3:28654335-28654354 None:intergenic 40.0%
TGAGAAGAAAATCATGGCTC+TGG - chr4.3:28654121-28654140 MS.gene96811:CDS 40.0%
TTGAATTGAATCCTCCTCCT+GGG - chr4.3:28651527-28651546 MS.gene96811:intron 40.0%
TTTGAATTGAATCCTCCTCC+TGG - chr4.3:28651526-28651545 MS.gene96811:intron 40.0%
! AACCGTGGAACTGACTTTAT+TGG + chr4.3:28650655-28650674 None:intergenic 40.0%
! CTTTCTTTTTGTCGACGATC+TGG + chr4.3:28652365-28652384 None:intergenic 40.0%
! CTTTTGGTCCACTAACCTTT+AGG + chr4.3:28652005-28652024 None:intergenic 40.0%
! GAAATGTCAGGTTGCTTGTA+AGG - chr4.3:28653572-28653591 MS.gene96811:intron 40.0%
! TCAGCATTCTCTGTAGCTTT+TGG + chr4.3:28652021-28652040 None:intergenic 40.0%
! TCTTCTAGGAATACTGGATG+TGG + chr4.3:28650844-28650863 None:intergenic 40.0%
!! AAGTTTTGTCAAGAACGCTG+AGG - chr4.3:28654073-28654092 MS.gene96811:CDS 40.0%
!! AGTATTGATTGTGGTGGTGA+AGG + chr4.3:28651727-28651746 None:intergenic 40.0%
!!! AGTTTTGGGAAAAATGAGGC+CGG + chr4.3:28651053-28651072 None:intergenic 40.0%
AAAAATGAGGCCGGTGACAA+AGG + chr4.3:28651044-28651063 None:intergenic 45.0%
AACAAGAAGACCTCACTGCA+AGG - chr4.3:28651463-28651482 MS.gene96811:intron 45.0%
AAGTGCACCATTCGAAATGC+TGG - chr4.3:28653444-28653463 MS.gene96811:CDS 45.0%
AATGGCGATCTGTCTCAACT+TGG - chr4.3:28652747-28652766 MS.gene96811:intron 45.0%
ACTGGTAACCGTATGAACGA+TGG - chr4.3:28653645-28653664 MS.gene96811:intron 45.0%
AGAGGAGCTCACTACTACTA+TGG - chr4.3:28652857-28652876 MS.gene96811:CDS 45.0%
AGAGTGGGAACTATCCATTC+TGG - chr4.3:28651550-28651569 MS.gene96811:intron 45.0%
AGCATGAGCAATGCAACTGA+AGG + chr4.3:28652925-28652944 None:intergenic 45.0%
ATCCTCCTTTCAGCTATAGC+TGG + chr4.3:28654368-28654387 None:intergenic 45.0%
ATGAACGATGGAACATACCG+TGG - chr4.3:28653657-28653676 MS.gene96811:intron 45.0%
ATGGCGATCTGTCTCAACTT+GGG - chr4.3:28652748-28652767 MS.gene96811:intron 45.0%
ATTCATGCTCAAGCTGAGCA+AGG + chr4.3:28651267-28651286 None:intergenic 45.0%
CAAGAAGTTTGTGGAACAGC+CGG + chr4.3:28653611-28653630 None:intergenic 45.0%
CAAGAGATTATCCGCTCTGA+GGG - chr4.3:28653771-28653790 MS.gene96811:intron 45.0%
CATGAGCAATGCAACTGAAG+GGG + chr4.3:28652923-28652942 None:intergenic 45.0%
CATTGAGTTTGTGTGCGTGA+TGG + chr4.3:28653509-28653528 None:intergenic 45.0%
CCACCACAATCAATACTAGC+TGG - chr4.3:28651730-28651749 MS.gene96811:intron 45.0%
CCACTAACCTTTAGGCCAAT+TGG + chr4.3:28651997-28652016 None:intergenic 45.0%
CTAACCTTTAGGCCAATTGG+AGG + chr4.3:28651994-28652013 None:intergenic 45.0%
CTCCTACTGGAATTGTTTGC+CGG - chr4.3:28650627-28650646 MS.gene96811:CDS 45.0%
GCATGAGCAATGCAACTGAA+GGG + chr4.3:28652924-28652943 None:intergenic 45.0%
GGTGACAAAGGAGGAGAAAT+AGG + chr4.3:28651032-28651051 None:intergenic 45.0%
TAAATGCTTGTGCACCACCA+CGG + chr4.3:28653677-28653696 None:intergenic 45.0%
TCAAGAGATTATCCGCTCTG+AGG - chr4.3:28653770-28653789 MS.gene96811:intron 45.0%
TCCATTCGCTTAAACGCAGA+GGG + chr4.3:28652810-28652829 None:intergenic 45.0%
TGCTTGCCATCCTCAAATCA+AGG - chr4.3:28650713-28650732 MS.gene96811:CDS 45.0%
TGGATATCTGCTTGAGCAAC+TGG + chr4.3:28650681-28650700 None:intergenic 45.0%
TTCATGCTCAAGCTGAGCAA+GGG + chr4.3:28651266-28651285 None:intergenic 45.0%
TTCCAGCTATAGCTGAAAGG+AGG - chr4.3:28654363-28654382 MS.gene96811:intron 45.0%
TTCCATTCGCTTAAACGCAG+AGG + chr4.3:28652811-28652830 None:intergenic 45.0%
! AGCAGTTGCTGTTAAGCTGT+CGG + chr4.3:28653958-28653977 None:intergenic 45.0%
! ATGGGAGCTTTTACTGCTGT+CGG - chr4.3:28651496-28651515 MS.gene96811:intron 45.0%
! CACCTTCTGATTTTCGTCAG+CGG - chr4.3:28654336-28654355 MS.gene96811:intron 45.0%
! CCAAAAGGTGTAAACGAAGG+CGG + chr4.3:28651628-28651647 None:intergenic 45.0%
! CCAATTGGCCTAAAGGTTAG+TGG - chr4.3:28651994-28652013 MS.gene96811:intron 45.0%
! CGATTGATTTCCTTGCAGTG+AGG + chr4.3:28651476-28651495 None:intergenic 45.0%
! GGAACTGACTTTATTGGTGC+CGG + chr4.3:28650649-28650668 None:intergenic 45.0%
! GGTCCTTCCAATCATGCTTT+TGG - chr4.3:28651382-28651401 MS.gene96811:intron 45.0%
!! CCAGCTAGTATTGATTGTGG+TGG + chr4.3:28651733-28651752 None:intergenic 45.0%
!! GACTGCAGGCAAAGGTATTT+AGG - chr4.3:28650544-28650563 MS.gene96811:CDS 45.0%
!! GCACCAGCTAGTATTGATTG+TGG + chr4.3:28651736-28651755 None:intergenic 45.0%
!! GGAGTCCTTTGCAGTTTTAG+AGG - chr4.3:28652878-28652897 MS.gene96811:CDS 45.0%
AACGATGGAACATACCGTGG+TGG - chr4.3:28653660-28653679 MS.gene96811:intron 50.0%
AATGCTGAAGCAGGTGCAGA+AGG - chr4.3:28652033-28652052 MS.gene96811:intron 50.0%
ACACGGCCTGGATTTCTTCT+AGG + chr4.3:28650858-28650877 None:intergenic 50.0%
ACAGCAACTGCTGCCAAACT+TGG - chr4.3:28653966-28653985 MS.gene96811:CDS 50.0%
ACGACAAAAGGGGAGAAGCT+TGG - chr4.3:28651409-28651428 MS.gene96811:intron 50.0%
AGCACGGGCGATTACTTTCA+CGG - chr4.3:28654149-28654168 MS.gene96811:CDS 50.0%
AGCCGCTGACGAAAATCAGA+AGG + chr4.3:28654341-28654360 None:intergenic 50.0%
ATCTTCTGACACGAACGGGA+AGG - chr4.3:28651109-28651128 MS.gene96811:CDS 50.0%
CAGCTCATATCAGAACCACC+TGG - chr4.3:28650885-28650904 MS.gene96811:CDS 50.0%
CCACCATGGCTTTCAGGAAA+CGG + chr4.3:28652782-28652801 None:intergenic 50.0%
CCTCCATCTTCTGACACGAA+CGG - chr4.3:28651104-28651123 MS.gene96811:CDS 50.0%
CGGCAAACAATTCCAGTAGG+AGG + chr4.3:28650629-28650648 None:intergenic 50.0%
CTCCATCTTCTGACACGAAC+GGG - chr4.3:28651105-28651124 MS.gene96811:CDS 50.0%
GAATGTCCACCATGGCTTTC+AGG + chr4.3:28652788-28652807 None:intergenic 50.0%
GCTACAGAGAATGCTGAAGC+AGG - chr4.3:28652024-28652043 MS.gene96811:intron 50.0%
GTTATGTAGCCGTGCCTACA+TGG - chr4.3:28653256-28653275 MS.gene96811:CDS 50.0%
TAGAGGGTTTCGTGAGACAG+TGG - chr4.3:28654049-28654068 MS.gene96811:CDS 50.0%
TATGCTTTCGTAAGGCTGGC+CGG - chr4.3:28651219-28651238 MS.gene96811:CDS 50.0%
TCCCTCTGCGTTTAAGCGAA+TGG - chr4.3:28652806-28652825 MS.gene96811:CDS 50.0%
TGACCGTTTCCTGAAAGCCA+TGG - chr4.3:28652776-28652795 MS.gene96811:intron 50.0%
TGCCGGCAAACAATTCCAGT+AGG + chr4.3:28650632-28650651 None:intergenic 50.0%
TGTAAACGAAGGCGGCTCAT+GGG + chr4.3:28651620-28651639 None:intergenic 50.0%
TTCCCGTTCGTGTCAGAAGA+TGG + chr4.3:28651110-28651129 None:intergenic 50.0%
TTTAGGCCAATTGGAGGTCG+AGG + chr4.3:28651988-28652007 None:intergenic 50.0%
TTTCCTGATCAGCCAACGAC+TGG + chr4.3:28652648-28652667 None:intergenic 50.0%
! CAGCTTTTATGCCCTCAGAG+CGG + chr4.3:28653785-28653804 None:intergenic 50.0%
! CCGCCTTCGTTTACACCTTT+TGG - chr4.3:28651625-28651644 MS.gene96811:intron 50.0%
! TAACCAGTCGTTGGCTGATC+AGG - chr4.3:28652642-28652661 MS.gene96811:CDS 50.0%
! TCAGGTGATGGTGTGAGACT+CGG + chr4.3:28650939-28650958 None:intergenic 50.0%
! TCGACCTCCAATTGGCCTAA+AGG - chr4.3:28651987-28652006 MS.gene96811:intron 50.0%
! TGTGGTGGTGAAGGAGTAGT+AGG + chr4.3:28651718-28651737 None:intergenic 50.0%
!! AGAAGGTGATGGGCGTGTAT+CGG + chr4.3:28654324-28654343 None:intergenic 50.0%
!! CAGGTGGTTCTGATATGAGC+TGG + chr4.3:28650887-28650906 None:intergenic 50.0%
!! CTTTGGCTTTCACAAGACCG+TGG + chr4.3:28653992-28654011 None:intergenic 50.0%
!! TGTCGGTGCCATCTTCAACA+AGG + chr4.3:28652697-28652716 None:intergenic 50.0%
AATCCTCCTCCTGGGAGAGT+GGG - chr4.3:28651535-28651554 MS.gene96811:intron 55.0%
AATGAGGCCGGTGACAAAGG+AGG + chr4.3:28651041-28651060 None:intergenic 55.0%
AATGGAGGGAGACTGGGTTC+AGG + chr4.3:28650957-28650976 None:intergenic 55.0%
ACTGCTGCCAAACTTGGCCA+CGG - chr4.3:28653972-28653991 MS.gene96811:CDS 55.0%
AGAGGATTCATCCTGCCTGG+AGG + chr4.3:28651595-28651614 None:intergenic 55.0%
ATAGTTCCCACTCTCCCAGG+AGG + chr4.3:28651544-28651563 None:intergenic 55.0%
CAAGACCAAGCTCGCGATAG+TGG + chr4.3:28653875-28653894 None:intergenic 55.0%
CACAAGACCGTGGCCAAGTT+TGG + chr4.3:28653982-28654001 None:intergenic 55.0%
CCGTTCGTGTCAGAAGATGG+AGG + chr4.3:28651107-28651126 None:intergenic 55.0%
CCGTTTCCTGAAAGCCATGG+TGG - chr4.3:28652779-28652798 MS.gene96811:intron 55.0%
CCTGGAGGAGGTCTTAAAGG+TGG + chr4.3:28651580-28651599 None:intergenic 55.0%
CTAGCAACACCAGACTGTCG+AGG + chr4.3:28651685-28651704 None:intergenic 55.0%
CTCCTTCTGCCGTTGACCAT+TGG + chr4.3:28652307-28652326 None:intergenic 55.0%
CTGCCTGGAGGAGGTCTTAA+AGG + chr4.3:28651583-28651602 None:intergenic 55.0%
CTTTCACGGGAATGCTGCGA+AGG - chr4.3:28654163-28654182 MS.gene96811:intron 55.0%
GAAATGTCTGCAGCTGCTGG+CGG + chr4.3:28651080-28651099 None:intergenic 55.0%
GAAGACCACTATCGCGAGCT+TGG - chr4.3:28653867-28653886 MS.gene96811:CDS 55.0%
GACCAATGGTCAACGGCAGA+AGG - chr4.3:28652302-28652321 MS.gene96811:intron 55.0%
GCACGGGCGATTACTTTCAC+GGG - chr4.3:28654150-28654169 MS.gene96811:CDS 55.0%
GCAGAAATGTCTGCAGCTGC+TGG + chr4.3:28651083-28651102 None:intergenic 55.0%
GCTTTCAGGAAACGGTCAGC+AGG + chr4.3:28652774-28652793 None:intergenic 55.0%
GGAAGAGGATTCATCCTGCC+TGG + chr4.3:28651598-28651617 None:intergenic 55.0%
GGACCAGGTTTAGCACCAGA+TGG + chr4.3:28651925-28651944 None:intergenic 55.0%
GGGAATGCTGCGAAGGATGA+TGG - chr4.3:28654170-28654189 MS.gene96811:intron 55.0%
GGGCATAAAAGCTGCTCGAG+CGG - chr4.3:28653791-28653810 MS.gene96811:intron 55.0%
GGTGGTGAAGGAGTAGTAGG+AGG + chr4.3:28651715-28651734 None:intergenic 55.0%
GGTTTAGCACCAGATGGTGC+TGG + chr4.3:28651919-28651938 None:intergenic 55.0%
GTAAACGAAGGCGGCTCATG+GGG + chr4.3:28651619-28651638 None:intergenic 55.0%
GTGTAAACGAAGGCGGCTCA+TGG + chr4.3:28651621-28651640 None:intergenic 55.0%
GTTTGGCACCAAGTGGTGCA+GGG + chr4.3:28651828-28651847 None:intergenic 55.0%
TGATGGGGATAGGCTGGGTT+CGG + chr4.3:28650982-28651001 None:intergenic 55.0%
TGGATAGTTCCCACTCTCCC+AGG + chr4.3:28651547-28651566 None:intergenic 55.0%
TTGAGCAACTGGTCGAACCG+TGG + chr4.3:28650670-28650689 None:intergenic 55.0%
TTGAGGTGAAGGGTCTTGGG+AGG + chr4.3:28652337-28652356 None:intergenic 55.0%
TTTGGCACCAAGTGGTGCAG+GGG + chr4.3:28651827-28651846 None:intergenic 55.0%
! AGGTGATGGTGTGAGACTCG+GGG + chr4.3:28650937-28650956 None:intergenic 55.0%
! CAGGTGATGGTGTGAGACTC+GGG + chr4.3:28650938-28650957 None:intergenic 55.0%
! GCACCATCTGGTGCTAAACC+TGG - chr4.3:28651919-28651938 MS.gene96811:intron 55.0%
! GGATTAGGAAGTAGAGGCGC+TGG + chr4.3:28651011-28651030 None:intergenic 55.0%
! TTAGCACCAGATGGTGCTGG+CGG + chr4.3:28651916-28651935 None:intergenic 55.0%
!! ATGGCTCTGGTGAAGAGCAC+GGG - chr4.3:28654134-28654153 MS.gene96811:CDS 55.0%
!! CATGGCTCTGGTGAAGAGCA+CGG - chr4.3:28654133-28654152 MS.gene96811:CDS 55.0%
!! CCACCTTTAAGACCTCCTCC+AGG - chr4.3:28651577-28651596 MS.gene96811:intron 55.0%
!! CTGCTGGCGGTGTCAGTTTT+GGG + chr4.3:28651067-28651086 None:intergenic 55.0%
!! CTTTAAGACCTCCTCCAGGC+AGG - chr4.3:28651581-28651600 MS.gene96811:intron 55.0%
!! TCGCGAGCTTGGTCTTGAGA+TGG - chr4.3:28653878-28653897 MS.gene96811:CDS 55.0%
ACACCAGACTGTCGAGGAGG+AGG + chr4.3:28651679-28651698 None:intergenic 60.0%
AGCTGGAGCAAAACACGGCC+TGG + chr4.3:28650870-28650889 None:intergenic 60.0%
AGGCCAATTGGAGGTCGAGG+AGG + chr4.3:28651985-28652004 None:intergenic 60.0%
AGGGCGAGGAGGAACAGGTT+TGG + chr4.3:28651758-28651777 None:intergenic 60.0%
AGGTGAAGGGTCTTGGGAGG+AGG + chr4.3:28652334-28652353 None:intergenic 60.0%
CCACCACTCTTAGGAGGAGG+AGG + chr4.3:28651958-28651977 None:intergenic 60.0%
CCACTCTTAGGAGGAGGAGG+AGG + chr4.3:28651955-28651974 None:intergenic 60.0%
CCTCCTCCTCCTAAGAGTGG+TGG - chr4.3:28651955-28651974 MS.gene96811:intron 60.0%
CCTCCTCCTCCTCCTAAGAG+TGG - chr4.3:28651952-28651971 MS.gene96811:intron 60.0%
CGCAGAGGGAATGTCCACCA+TGG + chr4.3:28652796-28652815 None:intergenic 60.0%
CGGGGTAGGTGATCCAACTG+CGG + chr4.3:28650919-28650938 None:intergenic 60.0%
CTCTTAGGAGGAGGAGGAGG+TGG + chr4.3:28651952-28651971 None:intergenic 60.0%
GAATCCTCCTCCTGGGAGAG+TGG - chr4.3:28651534-28651553 MS.gene96811:intron 60.0%
GATAGGCTGGGTTCGGGCAA+TGG + chr4.3:28650975-28650994 None:intergenic 60.0%
GATGGGGATAGGCTGGGTTC+GGG + chr4.3:28650981-28651000 None:intergenic 60.0%
GATGGTGTGAGACTCGGGGT+AGG + chr4.3:28650933-28650952 None:intergenic 60.0%
GCAACACCAGACTGTCGAGG+AGG + chr4.3:28651682-28651701 None:intergenic 60.0%
GCGCGCATTGAACGTGACGA+TGG - chr4.3:28652407-28652426 MS.gene96811:intron 60.0%
GCTCCACCACTCTTAGGAGG+AGG + chr4.3:28651961-28651980 None:intergenic 60.0%
GCTCCTCCTCGACCTCCAAT+TGG - chr4.3:28651979-28651998 MS.gene96811:intron 60.0%
GCTGAAGCAGGTGCAGAAGG+TGG - chr4.3:28652036-28652055 MS.gene96811:intron 60.0%
GGACTAGGTTTGGCACCAGG+TGG + chr4.3:28651796-28651815 None:intergenic 60.0%
GGAGCTCCACCACTCTTAGG+AGG + chr4.3:28651964-28651983 None:intergenic 60.0%
GGAGGACTAGGTTTGGCACC+AGG + chr4.3:28651799-28651818 None:intergenic 60.0%
GGAGGAGCTCCACCACTCTT+AGG + chr4.3:28651967-28651986 None:intergenic 60.0%
GGATTCATCCTGCCTGGAGG+AGG + chr4.3:28651592-28651611 None:intergenic 60.0%
GGGAGACTGGGTTCAGGTGA+TGG + chr4.3:28650951-28650970 None:intergenic 60.0%
GGGCGTGTATCGGACGAAGA+CGG + chr4.3:28654314-28654333 None:intergenic 60.0%
GGGGTAGGTGATCCAACTGC+GGG + chr4.3:28650918-28650937 None:intergenic 60.0%
GGGTAGGTGATCCAACTGCG+GGG + chr4.3:28650917-28650936 None:intergenic 60.0%
GGTTTGGCACCAAGTGGTGC+AGG + chr4.3:28651829-28651848 None:intergenic 60.0%
GTTTGGCACCAGGTGGAGCA+GGG + chr4.3:28651789-28651808 None:intergenic 60.0%
GTTTGGCACCAGGTGGTGCA+GGG + chr4.3:28651873-28651892 None:intergenic 60.0%
TCGGGCAATGGAGGGAGACT+GGG + chr4.3:28650963-28650982 None:intergenic 60.0%
TTCGGGCAATGGAGGGAGAC+TGG + chr4.3:28650964-28650983 None:intergenic 60.0%
TTGGCACCAAGTGGTGCAGG+GGG + chr4.3:28651826-28651845 None:intergenic 60.0%
TTTGGCACCAGGTGGTGCAG+GGG + chr4.3:28651872-28651891 None:intergenic 60.0%
! GTGGAGCAGGGTGTAGTGGA+GGG + chr4.3:28651777-28651796 None:intergenic 60.0%
!! AGGAAGTAGAGGCGCTGGAG+CGG + chr4.3:28651006-28651025 None:intergenic 60.0%
!! GCACCACTTGGTGCCAAACC+CGG - chr4.3:28651829-28651848 MS.gene96811:intron 60.0%
!! GCTGCTGGCGGTGTCAGTTT+TGG + chr4.3:28651068-28651087 None:intergenic 60.0%
!! GGGTGGTGGAGGACTAGGTT+TGG + chr4.3:28651806-28651825 None:intergenic 60.0%
ACTGCGGGGCCTAAACCAGG+TGG + chr4.3:28650903-28650922 None:intergenic 65.0%
AGGCTGGGTTCGGGCAATGG+AGG + chr4.3:28650972-28650991 None:intergenic 65.0%
AGTGGAGGGCGAGGAGGAAC+AGG + chr4.3:28651763-28651782 None:intergenic 65.0%
CCAACTGCGGGGCCTAAACC+AGG + chr4.3:28650906-28650925 None:intergenic 65.0%
CCACTACACCCTGCTCCACC+TGG - chr4.3:28651778-28651797 MS.gene96811:intron 65.0%
CCAGACTGTCGAGGAGGAGG+AGG + chr4.3:28651676-28651695 None:intergenic 65.0%
CCAGGTGGAGCAGGGTGTAG+TGG + chr4.3:28651781-28651800 None:intergenic 65.0%
CCTCCTCCTCCTCGACAGTC+TGG - chr4.3:28651673-28651692 MS.gene96811:intron 65.0%
CCTGGTTTAGGCCCCGCAGT+TGG - chr4.3:28650903-28650922 MS.gene96811:CDS 65.0%
GAAGGCGGCTCATGGGGAAG+AGG + chr4.3:28651613-28651632 None:intergenic 65.0%
GGACCGGGTTTGGCACCAAG+TGG + chr4.3:28651835-28651854 None:intergenic 65.0%
GGCTGGGTTCGGGCAATGGA+GGG + chr4.3:28650971-28650990 None:intergenic 65.0%
GGTGGAGCAGGGTGTAGTGG+AGG + chr4.3:28651778-28651797 None:intergenic 65.0%
GGTTTGGCACCAGGTGGAGC+AGG + chr4.3:28651790-28651809 None:intergenic 65.0%
GGTTTGGCACCAGGTGGTGC+AGG + chr4.3:28651874-28651893 None:intergenic 65.0%
GTTCCCACTCTCCCAGGAGG+AGG + chr4.3:28651541-28651560 None:intergenic 65.0%
TTGGCACCAGGTGGTGCAGG+GGG + chr4.3:28651871-28651890 None:intergenic 65.0%
! GCACCACCTGGTGCCAAACC+CGG - chr4.3:28651874-28651893 MS.gene96811:intron 65.0%
!! AGATGGTGCTGGCGGTGGTG+GGG + chr4.3:28651908-28651927 None:intergenic 65.0%
!! AGCGGGTGATGGGGATAGGC+TGG + chr4.3:28650988-28651007 None:intergenic 65.0%
!! CAGATGGTGCTGGCGGTGGT+GGG + chr4.3:28651909-28651928 None:intergenic 65.0%
!! CTGGAGCGGGTGATGGGGAT+AGG + chr4.3:28650992-28651011 None:intergenic 65.0%
!! GCGGGTGATGGGGATAGGCT+GGG + chr4.3:28650987-28651006 None:intergenic 65.0%
!! GGAAGTAGAGGCGCTGGAGC+GGG + chr4.3:28651005-28651024 None:intergenic 65.0%
AGGTGGTGCAGGGGGTGGTG+GGG + chr4.3:28651863-28651882 None:intergenic 70.0%
CAGGTGGTGCAGGGGGTGGT+GGG + chr4.3:28651864-28651883 None:intergenic 70.0%
CCAAGTGGTGCAGGGGGTGG+TGG + chr4.3:28651820-28651839 None:intergenic 70.0%
CCACCACCCCCTGCACCACT+TGG - chr4.3:28651817-28651836 MS.gene96811:intron 70.0%
CCACCACCGCCAGCACCATC+TGG - chr4.3:28651907-28651926 MS.gene96811:intron 70.0%
GCACCAAGTGGTGCAGGGGG+TGG + chr4.3:28651823-28651842 None:intergenic 70.0%
GGACCGGGTTTGGCACCAGG+TGG + chr4.3:28651880-28651899 None:intergenic 70.0%
GGAGGACCGGGTTTGGCACC+AGG + chr4.3:28651838-28651857 None:intergenic 70.0%
GGAGGAGGAGGAGGTGGACG+AGG + chr4.3:28651946-28651965 None:intergenic 70.0%
GGAGGAGGTGGACGAGGACC+AGG + chr4.3:28651940-28651959 None:intergenic 70.0%
TGGGGGAGGAGGACCGGGTT+TGG + chr4.3:28651845-28651864 None:intergenic 70.0%
! AGTGGTGCAGGGGGTGGTGG+AGG + chr4.3:28651817-28651836 None:intergenic 70.0%
! GCAGGGTGTAGTGGAGGGCG+AGG + chr4.3:28651772-28651791 None:intergenic 70.0%
! GGGTGTAGTGGAGGGCGAGG+AGG + chr4.3:28651769-28651788 None:intergenic 70.0%
!! AGAGGCGCTGGAGCGGGTGA+TGG + chr4.3:28650999-28651018 None:intergenic 70.0%
!! AGGCGCTGGAGCGGGTGATG+GGG + chr4.3:28650997-28651016 None:intergenic 70.0%
!! CCAGATGGTGCTGGCGGTGG+TGG + chr4.3:28651910-28651929 None:intergenic 70.0%
!! GAGGCGCTGGAGCGGGTGAT+GGG + chr4.3:28650998-28651017 None:intergenic 70.0%
!! GATGGTGCTGGCGGTGGTGG+GGG + chr4.3:28651907-28651926 None:intergenic 70.0%
!! GCACCAGATGGTGCTGGCGG+TGG + chr4.3:28651913-28651932 None:intergenic 70.0%
!! GCAGGGGGTGGTGGAGGACT+AGG + chr4.3:28651811-28651830 None:intergenic 70.0%
CCACCACCCCCTGCACCACC+TGG - chr4.3:28651862-28651881 MS.gene96811:intron 75.0%
CCAGGTGGTGCAGGGGGTGG+TGG + chr4.3:28651865-28651884 None:intergenic 75.0%
GCACCAGGTGGTGCAGGGGG+TGG + chr4.3:28651868-28651887 None:intergenic 75.0%
! GGTGGTGCAGGGGGTGGTGG+GGG + chr4.3:28651862-28651881 None:intergenic 75.0%
!! CGGTGGTGGGGGAGGAGGAC+CGG + chr4.3:28651896-28651915 None:intergenic 75.0%
!! GGGTGGTGGGGGAGGAGGAC+CGG + chr4.3:28651851-28651870 None:intergenic 75.0%
!! GGTGGTGGGGGAGGAGGACC+GGG + chr4.3:28651850-28651869 None:intergenic 75.0%
!!! GCAGGGGGTGGTGGGGGAGG+AGG + chr4.3:28651856-28651875 None:intergenic 80.0%
!!! GCTGGCGGTGGTGGGGGAGG+AGG + chr4.3:28651901-28651920 None:intergenic 80.0%
!!! GGTGCAGGGGGTGGTGGGGG+AGG + chr4.3:28651859-28651878 None:intergenic 80.0%
!!! GGTGCTGGCGGTGGTGGGGG+AGG + chr4.3:28651904-28651923 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 28650542 28654421 28650542 ID=MS.gene96811
chr4.3 mRNA 28650542 28654421 28650542 ID=MS.gene96811.t1;Parent=MS.gene96811
chr4.3 exon 28654406 28654421 28654406 ID=MS.gene96811.t1.exon1;Parent=MS.gene96811.t1
chr4.3 CDS 28654406 28654421 28654406 ID=cds.MS.gene96811.t1;Parent=MS.gene96811.t1
chr4.3 exon 28653820 28654176 28653820 ID=MS.gene96811.t1.exon2;Parent=MS.gene96811.t1
chr4.3 CDS 28653820 28654176 28653820 ID=cds.MS.gene96811.t1;Parent=MS.gene96811.t1
chr4.3 exon 28652800 28653580 28652800 ID=MS.gene96811.t1.exon3;Parent=MS.gene96811.t1
chr4.3 CDS 28652800 28653580 28652800 ID=cds.MS.gene96811.t1;Parent=MS.gene96811.t1
chr4.3 exon 28652507 28652712 28652507 ID=MS.gene96811.t1.exon4;Parent=MS.gene96811.t1
chr4.3 CDS 28652507 28652712 28652507 ID=cds.MS.gene96811.t1;Parent=MS.gene96811.t1
chr4.3 exon 28652064 28652299 28652064 ID=MS.gene96811.t1.exon5;Parent=MS.gene96811.t1
chr4.3 CDS 28652064 28652299 28652064 ID=cds.MS.gene96811.t1;Parent=MS.gene96811.t1
chr4.3 exon 28650542 28651381 28650542 ID=MS.gene96811.t1.exon6;Parent=MS.gene96811.t1
chr4.3 CDS 28650542 28651381 28650542 ID=cds.MS.gene96811.t1;Parent=MS.gene96811.t1
Gene Sequence

>MS.gene96811

ATGACTGCAGGCAAAGGTATTTAGGACCACTTGCTGTGAAGATTTTATTCATTTAAAGAAAGAGGATGAATATCATGATTTATGCCTCCTACTGGAATTGTTTGCCGGCACCAATAAAGTCAGTTCCACGGTTCGACCAGTTGCTCAAGCAGATATCCAAAAATTGCTTAATGCTTGCCATCCTCAAATCAAGGAAATCTTTCTTCATTGTTTGAGAAAAAATAATCTTCTATTACATGTCTTAGGCGAAGAGGATGATTCCAAGATATGGCATGTCACTAATACGGGATATCTTTTTTCCACATCCAGTATTCCTAGAAGAAATCCAGGCCGTGTTTTGCTCCAGCTCATATCAGAACCACCTGGTTTAGGCCCCGCAGTTGGATCACCTACCCCGAGTCTCACACCATCACCTGAACCCAGTCTCCCTCCATTGCCCGAACCCAGCCTATCCCCATCACCCGCTCCAGCGCCTCTACTTCCTAATCCTATTTCTCCTCCTTTGTCACCGGCCTCATTTTTCCCAAAACTGACACCGCCAGCAGCTGCAGACATTTCTGCTCCTCCATCTTCTGACACGAACGGGAAGGAAGATAACCATAGTAATAAAACAACAGTTGTTCTTTCTGTAGTTATAACTATATCGGTGATATTTATAGCTGCAGCATTGTTCTTTTTATGCTTTCGTAAGGCTGGCCGGCTTAGACAAAATGATGAGAGGCCCTTGCTCAGCTTGAGCATGAATGACTATTCTTTTGGTACATATTATTATATTACATTTCATTTCATTCATACTTTGTTAATGTGTTACACTTGTTGTGACATTGACTTTATTGTACAGGTCCTTCCAATCATGCTTTTGGAAATACGACAAAAGGGGAGAAGCTTGGATTTCAGTCATCAAGTAATAATTTAGGAGACAACAAGAAGACCTCACTGCAAGGAAATCAATCGATGGGAGCTTTTACTGCTGTCGGATCGCCATTTGAATTGAATCCTCCTCCTGGGAGAGTGGGAACTATCCATTCTGGAATTCCACCTTTAAGACCTCCTCCAGGCAGGATGAATCCTCTTCCCCATGAGCCGCCTTCGTTTACACCTTTTGGTAATACTGTCGTCTCTACTGCTGCACCTCCTCCTCCTCGACAGTCTGGTGTTGCTAGTGCTCGACCTCCTACTACTCCTTCACCACCACAATCAATACTAGCTGGTGCCAAACCTGTTCCTCCTCGCCCTCCACTACACCCTGCTCCACCTGGTGCCAAACCTAGTCCTCCACCACCCCCTGCACCACTTGGTGCCAAACCCGGTCCTCCTCCCCCACCACCCCCTGCACCACCTGGTGCCAAACCCGGTCCTCCTCCCCCACCACCGCCAGCACCATCTGGTGCTAAACCTGGTCCTCGTCCACCTCCTCCTCCTCCTAAGAGTGGTGGAGCTCCTCCTCGACCTCCAATTGGCCTAAAGGTTAGTGGACCAAAAGCTACAGAGAATGCTGAAGCAGGTGCAGAAGGTGGAGCTGATACTTCTAAAGCCAAACTAAAGCCATTTTTCTGGGATAAGGTTCCAGCTAATTCAAATCAATCAATGGTTTGGAATCAGATCAAATCAGGATCATTCCAGTAAGGACCAAATCCAAAAATTATTTTGTTGAGCATGGACAATAATTTATGAATAGCTGCTAATATTCCTTAATGACAATTTGATAGGTTTAATGAAGAGATGATAGAGACACTTTTTGGTTATAATGCTGTGAATAAGACCAATGGTCAACGGCAGAAGGAGTCTTCCTCCTCCCAAGACCCTTCACCTCAATATATCCAGATCGTCGACAAAAAGAAAGCACAAAATTTATTAATTCTGTTGCGCGCATTGAACGTGACGATGGAAGAAGTTTGTGATGCACTTTATGAAGGTGAGTTCTTGTTCCTTCAGTTTGCCCAAGAAATTGCTGATAACTGTAATAGGGATATTAGGTTCTTTTGAGCAAACTAAGTTATTCCTTGTTTGGTTTACTGATTGAACATGATGAAAGTATACATAGAAATTTAGAAGCAAAATTATTTAGGCATCTCTTGTTCCACCTGTATGATGTCTTTCTAACCAGTCGTTGGCTGATCAGGAAATGAGCTACCGTCAGAATTCCTTCAAACCTTGTTGAAGATGGCACCGACATCAGACGAAGAACTTAAGCTTAGACTTTTTAATGGCGATCTGTCTCAACTTGGGCCTGCTGACCGTTTCCTGAAAGCCATGGTGGACATTCCCTCTGCGTTTAAGCGAATGGAAGTACTGCTTTTTATGTGTACATTTAAAGAGGAGCTCACTACTACTATGGAGTCCTTTGCAGTTTTAGAGGTATGATCTAAATTGCATCACCCCTTCAGTTGCATTGCTCATGCTCTTTCTAATCGGTATGAAATAAAAATCGTATATTTAAGTAAATGTAAATCAGATCATAGAATGGCTTGAGCGTGTAGTCGTCGAATATACTTACACAAAAACAGGGTTAGTGATCATTTCACTTATCTGTTAAACTTACTTAACTCGCACAATTCAACATCTTCTAATAGAATTTGTTTCTCATTAATCCAACCACTAAATTGACACTTATTATTTTGTTTTGTTTTGTTTTGAATGCAAAATTTTAGAAAATTTAGATTAATAATTTTTGTGCATCAAGTAGTTTATAGTTTCATATATTTCAAATACATGTTATGTAGCCGTGCCTACATGGTAAGATATACACATCTAGTACGAAACATTTTTTGATTAATATGAAACTTTAAAGAGAATACGTGCCTACATGGTAAGATATACACATCTAGTACGAAACATTTTTTGATTAATATGAAACTTTATGAGTTCGACTTGTTTCAATTTATTATTCCATTGATTTTAAAAGTGCACCATTCGAAATGCTGGTGAACATTGTAAATCAGTTTTAATGGTGAGGAGTGAGCACCATCACGCACACAAACTCAATGCTTTTTGTAACTGTAACGTGCATCCTCTCACTATAATTCATTTGAAATGTCAGGTTGCTTGTAAGGAACTAAGAAACAGCCGGCTGTTCCACAAACTTCTTGAAGCTGTTCTCAAAACTGGTAACCGTATGAACGATGGAACATACCGTGGTGGTGCACAAGCATTTAAACTTGATACACTCTTGAAATTATCTGATGTAAAAGGAACAGACGGCAAGACTACACTCTTACACTTTGTTGTTCAAGAGATTATCCGCTCTGAGGGCATAAAAGCTGCTCGAGCGGCGAAAGAGAGCCAAAGTTTGTCTAATATTAAAACGGACGAGCTTCATGAAACAGAAGACCACTATCGCGAGCTTGGTCTTGAGATGGTTTCACACTTGAGCACTGAGCTTGCTAATGTTAAAAGAGGATCTGTTCTAGACGCCGACAGCTTAACAGCAACTGCTGCCAAACTTGGCCACGGTCTTGTGAAAGCCAAAGATATACTAAACAAAAACCTGAAGAATGTTGAGGACGATAGAGGGTTTCGTGAGACAGTGGAAAGTTTTGTCAAGAACGCTGAGGCTGATGTTAAGAAACTGCTTGAAGATGAGAAGAAAATCATGGCTCTGGTGAAGAGCACGGGCGATTACTTTCACGGGAATGCTGCGAAGGATGATGGCTTGCGATTGTTTGTAGTAGTAAGAGACTTCTTGATAATGCTGGATAAAGTATGTAAGGAAGTGAGAGATGCACAAAAGAAGCCAGCAAAACCTATAAAACAAGAAACTTCACGAGGACCGTCTTCGTCCGATACACGCCCATCACCTTCTGATTTTCGTCAGCGGCTTTTTCCAGCTATAGCTGAAAGGAGGATAGATTATGTTAGTTCAGACGAGGAGAGTCCATAG
Protein sequence

>MS.gene96811.t1

MTAGKGEEDDSKIWHVTNTGYLFSTSSIPRRNPGRVLLQLISEPPGLGPAVGSPTPSLTPSPEPSLPPLPEPSLSPSPAPAPLLPNPISPPLSPASFFPKLTPPAAADISAPPSSDTNGKEDNHSPSNHAFGNTTKGEKLGFQSSSNNLGDNKKTSLQGNQSMGAFTAVGSPFELNPPPGRVGTIHSGIPPLRPPPGRMNPLPHEPPSFTPFGNTVVSTAAPPPPRQSGVASARPPTTPSPPQSILAGAKPVPPRPPLHPAPPGAKPSPPPPPAPLGAKPGPPPPPPPAPPGAKPGPPPPPPPAPSGAKPGPRPPPPPPKSGGAPPRPPIGLKVSGPKATENAEAGAEGGADTSKAKLKPFFWDKVPANSNQSMVWNQIKSGSFQFNEEMIETLFGYNAVNKTNGQRQKESSSSQDPSPQYIQIVDKKKAQNLLILLRALNVTMEEVCDALYEGNELPSEFLQTLLKMAPTSDEELKLRLFNGDLSQLGPADRFLKAMVDIPSAFKRMEVLLFMCTFKEELTTTMESFAVLEVACKELRNSRLFHKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGIKAARAAKESQSLSNIKTDELHETEDHYRELGLEMVSHLSTELANVKRGSVLDADSLTATAAKLGHGLVKAKDILNKNLKNVEDDRGFRETVESFVKNAEADVKKLLEDEKKIMALVKSTGDYFHGNAAKDDGLRLFVVVRDFLIMLDKVCKEVRDAQKKPAKPIKQETSRGPSSSDTRPSPSDFRQRLFPAIAERRIDYVSSDEESP