AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28870.t1 MTR_8g075240 100.000 197 0 0 1 197 1 197 4.13e-147 406
MS.gene28870.t1 MTR_5g022600 97.462 197 5 0 1 197 1 197 1.39e-143 397
MS.gene28870.t1 MTR_4g073250 90.355 197 19 0 1 197 1 197 8.50e-136 378
MS.gene28870.t1 MTR_3g078260 78.866 194 40 1 2 194 4 197 1.26e-118 335
MS.gene28870.t1 MTR_4g088055 85.955 178 25 0 1 178 1 178 1.26e-117 332
MS.gene28870.t1 MTR_2g090875 84.831 178 27 0 1 178 1 178 2.26e-117 331
MS.gene28870.t1 MTR_6g087980 75.377 199 46 1 1 196 1 199 4.52e-113 321
MS.gene28870.t1 MTR_3g078260 87.395 119 15 0 2 120 4 122 3.21e-77 228
MS.gene28870.t1 MTR_7g103070 30.851 188 116 4 8 192 18 194 5.03e-26 99.8
MS.gene28870.t1 MTR_1g068740 31.383 188 116 6 6 191 15 191 2.14e-25 98.2
MS.gene28870.t1 MTR_1g068730 31.383 188 116 6 6 191 15 191 3.84e-25 97.8
MS.gene28870.t1 MTR_1g115325 32.386 176 106 6 6 179 15 179 7.33e-25 97.1
MS.gene28870.t1 MTR_7g100020 31.383 188 116 6 6 191 15 191 7.66e-25 97.1
MS.gene28870.t1 MTR_8g093740 31.053 190 116 5 6 192 13 190 4.86e-24 94.7
MS.gene28870.t1 MTR_3g096350 30.159 189 117 5 7 192 13 189 8.25e-24 94.0
MS.gene28870.t1 MTR_8g006970 33.728 169 98 6 6 172 8 164 6.46e-23 90.9
MS.gene28870.t1 MTR_1g094220 32.584 178 103 7 7 180 32 196 6.82e-23 91.3
MS.gene28870.t1 MTR_8g103550 32.222 180 107 6 8 184 11 178 9.36e-23 90.9
MS.gene28870.t1 MTR_8g006970 34.066 182 101 8 6 180 22 191 9.56e-23 91.3
MS.gene28870.t1 MTR_8g031870 30.233 172 106 5 1 170 1 160 1.80e-22 90.1
MS.gene28870.t1 MTR_1g029450 31.285 179 108 5 6 181 17 183 1.98e-22 90.5
MS.gene28870.t1 MTR_1g094220 34.320 169 94 7 7 171 32 187 2.17e-22 90.1
MS.gene28870.t1 MTR_1g094220 34.320 169 94 7 7 171 32 187 2.55e-22 90.1
MS.gene28870.t1 MTR_1g062760 30.508 177 108 5 8 181 16 180 2.75e-22 90.1
MS.gene28870.t1 MTR_7g081700 31.551 187 109 7 6 185 8 182 3.11e-22 89.7
MS.gene28870.t1 MTR_4g063160 30.851 188 115 7 6 189 15 191 3.73e-22 89.7
MS.gene28870.t1 MTR_4g098950 33.333 165 96 5 8 170 11 163 4.56e-22 89.4
MS.gene28870.t1 MTR_2g005500 31.429 175 103 6 1 170 1 163 5.17e-22 89.0
MS.gene28870.t1 MTR_1g094220 33.333 171 97 7 7 173 32 189 7.23e-22 89.4
MS.gene28870.t1 MTR_1g068730 33.566 143 85 5 6 140 15 155 2.29e-21 86.7
MS.gene28870.t1 MTR_3g064390 33.520 179 104 5 8 183 12 178 2.36e-21 87.4
MS.gene28870.t1 MTR_6g021790 28.177 181 116 5 1 179 1 169 7.85e-21 86.3
MS.gene28870.t1 MTR_2g027660 28.488 172 109 5 1 170 1 160 9.10e-21 85.9
MS.gene28870.t1 MTR_2g096550 30.319 188 116 6 6 189 15 191 9.68e-21 85.9
MS.gene28870.t1 MTR_1g068740 32.624 141 87 4 6 139 15 154 1.38e-20 85.1
MS.gene28870.t1 MTR_5g013900 32.727 165 97 5 8 170 11 163 1.73e-20 85.1
MS.gene28870.t1 MTR_8g031830 29.825 171 106 5 1 169 1 159 3.13e-20 84.3
MS.gene28870.t1 MTR_2g083860 29.282 181 114 5 6 184 13 181 4.18e-20 84.3
MS.gene28870.t1 MTR_8g027220 31.522 184 97 7 8 169 28 204 4.70e-20 84.7
MS.gene28870.t1 MTR_5g076590 32.121 165 98 4 8 170 12 164 5.71e-20 83.6
MS.gene28870.t1 MTR_8g031660 29.070 172 108 5 1 170 1 160 7.01e-20 83.6
MS.gene28870.t1 MTR_3g069510 30.729 192 117 6 6 195 12 189 8.03e-20 83.6
MS.gene28870.t1 MTR_2g102060 30.909 165 100 5 8 170 12 164 1.17e-19 82.8
MS.gene28870.t1 MTR_2g005510 31.579 171 103 5 6 174 15 173 1.23e-19 83.2
MS.gene28870.t1 MTR_8g031680 27.907 172 110 5 1 170 1 160 1.59e-19 82.8
MS.gene28870.t1 MTR_1g052475 33.333 165 96 5 8 170 17 169 1.74e-19 82.8
MS.gene28870.t1 MTR_7g117910 35.714 126 78 3 8 131 22 146 4.10e-19 81.6
MS.gene28870.t1 MTR_3g087160 30.909 165 100 4 8 170 11 163 4.74e-19 81.3
MS.gene28870.t1 MTR_4g079350 33.333 150 90 4 6 146 13 161 5.73e-19 81.3
MS.gene28870.t1 MTR_0262s0050 32.727 165 97 6 8 170 17 169 5.91e-19 81.6
MS.gene28870.t1 MTR_8g090215 31.515 165 99 5 8 170 11 163 7.50e-19 80.9
MS.gene28870.t1 MTR_1g097420 31.250 192 115 7 1 184 1 183 7.58e-19 80.9
MS.gene28870.t1 MTR_3g064390 36.885 122 74 3 8 127 12 132 8.46e-19 79.7
MS.gene28870.t1 MTR_7g051940 28.947 190 121 5 6 193 13 190 1.07e-18 80.5
MS.gene28870.t1 MTR_1g090717 28.495 186 118 5 7 188 16 190 1.30e-18 80.5
MS.gene28870.t1 MTR_4g088090 31.737 167 100 5 6 170 13 167 1.55e-18 80.1
MS.gene28870.t1 MTR_8g089985 32.121 165 98 5 8 170 19 171 1.68e-18 80.5
MS.gene28870.t1 MTR_2g075950 35.833 120 74 3 6 123 13 131 2.83e-18 79.7
MS.gene28870.t1 MTR_2g014990 35.833 120 74 3 6 123 13 131 4.43e-18 79.0
MS.gene28870.t1 MTR_4g064897 32.609 138 83 4 6 134 12 148 5.54e-18 79.0
MS.gene28870.t1 MTR_7g405790 28.947 190 121 5 6 193 15 192 8.28e-18 78.6
MS.gene28870.t1 MTR_3g096350 34.746 118 73 3 7 121 13 129 1.00e-17 76.6
MS.gene28870.t1 MTR_3g096350 34.746 118 73 3 7 121 13 129 1.11e-17 76.3
MS.gene28870.t1 MTR_3g086980 31.325 166 98 6 8 170 18 170 1.17e-17 78.2
MS.gene28870.t1 MTR_2g101890 29.570 186 116 6 6 185 10 186 2.86e-17 76.6
MS.gene28870.t1 MTR_1g078200 30.114 176 105 6 6 177 14 175 4.62e-17 76.6
MS.gene28870.t1 MTR_4g069850 28.495 186 118 5 6 185 8 184 5.66e-17 75.9
MS.gene28870.t1 MTR_8g107070 29.101 189 120 5 6 192 14 190 7.90e-17 76.6
MS.gene28870.t1 MTR_8g093740 28.902 173 99 4 22 192 7 157 1.34e-16 74.3
MS.gene28870.t1 MTR_4g012940 29.016 193 120 7 1 185 1 184 2.29e-16 74.3
MS.gene28870.t1 MTR_8g036220 31.138 167 101 6 6 170 16 170 2.67e-16 74.7
MS.gene28870.t1 MTR_8g092020 26.238 202 122 4 6 188 12 205 6.98e-16 73.2
MS.gene28870.t1 MTR_2g090865 36.667 120 73 3 6 123 11 129 8.22e-16 72.8
MS.gene28870.t1 MTR_7g103070 29.054 148 92 3 47 192 2 138 1.19e-15 71.2
MS.gene28870.t1 MTR_6g079550 29.697 165 103 5 6 161 12 172 3.09e-15 71.6
MS.gene28870.t1 MTR_1g097420 31.034 174 105 6 17 184 46 210 3.27e-15 71.6
MS.gene28870.t1 MTR_7g094810 30.460 174 113 2 7 180 9 174 4.66e-15 73.2
MS.gene28870.t1 MTR_7g094810 28.342 187 100 3 7 180 9 174 4.67e-15 73.2
MS.gene28870.t1 MTR_7g094810 28.342 187 100 3 7 180 9 174 4.68e-15 73.2
MS.gene28870.t1 MTR_7g094810 28.342 187 100 3 7 180 9 174 4.89e-15 72.8
MS.gene28870.t1 MTR_7g094810 30.460 174 113 2 7 180 9 174 4.92e-15 73.2
MS.gene28870.t1 MTR_3g107717 28.485 165 103 4 7 170 14 164 3.46e-14 68.6
MS.gene28870.t1 MTR_4g099470 30.822 146 87 5 29 172 7 140 3.48e-14 67.8
MS.gene28870.t1 MTR_3g107707 28.485 165 103 4 7 170 14 164 3.76e-14 68.6
MS.gene28870.t1 MTR_3g107713 28.485 165 103 4 7 170 14 164 4.03e-14 68.6
MS.gene28870.t1 MTR_1g072280 28.571 175 115 4 7 180 13 178 2.59e-13 68.2
MS.gene28870.t1 MTR_1g082870 28.571 175 115 4 7 180 17 182 3.72e-13 67.8
MS.gene28870.t1 MTR_4g113620 27.966 118 76 3 7 124 14 122 2.09e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28870.t1 AT2G17800 95.939 197 8 0 1 197 1 197 1.29e-129 362
MS.gene28870.t1 AT2G17800 95.939 197 8 0 1 197 1 197 1.29e-129 362
MS.gene28870.t1 AT3G51300 95.939 197 8 0 1 197 1 197 2.04e-129 362
MS.gene28870.t1 AT4G35950 95.431 197 9 0 1 197 1 197 3.23e-129 361
MS.gene28870.t1 AT4G35020 88.889 198 21 1 1 197 1 198 1.52e-127 357
MS.gene28870.t1 AT4G35020 88.889 198 21 1 1 197 1 198 1.52e-127 357
MS.gene28870.t1 AT4G35020 88.889 198 21 1 1 197 1 198 1.52e-127 357
MS.gene28870.t1 AT1G75840 92.697 178 13 0 1 178 1 178 1.21e-124 350
MS.gene28870.t1 AT1G20090 91.477 176 15 0 3 178 2 177 4.40e-122 343
MS.gene28870.t1 AT5G45970 87.151 179 23 0 1 179 1 179 2.78e-119 336
MS.gene28870.t1 AT5G62880 81.564 179 33 0 2 180 4 182 5.40e-113 321
MS.gene28870.t1 AT3G48040 81.564 179 33 0 2 180 4 182 7.47e-112 318
MS.gene28870.t1 AT4G28950 75.000 200 44 2 1 196 1 198 4.93e-111 316
MS.gene28870.t1 AT2G44690 75.521 192 47 0 6 197 18 209 1.18e-107 307
MS.gene28870.t1 AT5G62880 80.233 172 30 1 2 173 4 171 4.26e-105 300
MS.gene28870.t1 AT3G48040 81.595 163 30 0 2 164 4 166 3.69e-102 292
MS.gene28870.t1 AT3G51290 95.732 164 7 0 34 197 635 798 3.76e-98 301
MS.gene28870.t1 AT4G35020 93.333 120 8 0 1 120 1 120 9.36e-83 242
MS.gene28870.t1 AT4G35020 93.333 120 8 0 1 120 1 120 9.36e-83 242
MS.gene28870.t1 AT3G54840 33.929 168 96 6 7 171 34 189 3.18e-24 94.7
MS.gene28870.t1 AT3G46060 32.934 167 99 6 6 170 15 170 3.43e-24 95.1
MS.gene28870.t1 AT3G46060 32.934 167 99 6 6 170 15 170 3.43e-24 95.1
MS.gene28870.t1 AT3G46060 32.934 167 99 6 6 170 15 170 3.43e-24 95.1
MS.gene28870.t1 AT3G54840 32.738 168 98 5 7 171 34 189 3.48e-24 94.7
MS.gene28870.t1 AT3G54840 32.530 166 97 5 9 171 2 155 1.20e-23 92.4
MS.gene28870.t1 AT1G02130 33.136 169 99 6 6 172 8 164 1.48e-23 93.2
MS.gene28870.t1 AT5G45130 33.939 165 95 4 8 170 12 164 1.98e-23 92.8
MS.gene28870.t1 AT3G53610 31.737 167 101 6 6 170 15 170 4.83e-23 92.0
MS.gene28870.t1 AT3G53610 31.737 167 101 6 6 170 15 170 4.83e-23 92.0
MS.gene28870.t1 AT3G53610 31.737 167 101 6 6 170 15 170 4.83e-23 92.0
MS.gene28870.t1 AT4G19640 33.939 165 95 4 8 170 12 164 5.04e-23 91.7
MS.gene28870.t1 AT5G59840 31.737 167 101 5 6 170 15 170 5.60e-23 92.0
MS.gene28870.t1 AT1G43890 29.474 190 119 5 6 192 13 190 9.10e-23 91.3
MS.gene28870.t1 AT1G43890 29.474 190 119 5 6 192 13 190 9.10e-23 91.3
MS.gene28870.t1 AT1G43890 29.474 190 119 5 6 192 13 190 9.10e-23 91.3
MS.gene28870.t1 AT5G45130 33.742 163 94 4 10 170 22 172 9.68e-23 91.3
MS.gene28870.t1 AT5G03530 29.255 188 118 5 8 192 15 190 1.08e-22 91.3
MS.gene28870.t1 AT5G03530 29.255 188 118 5 8 192 15 190 1.08e-22 91.3
MS.gene28870.t1 AT1G16920 32.418 182 109 6 6 185 13 182 7.59e-22 89.0
MS.gene28870.t1 AT2G44610 33.333 165 96 5 8 170 11 163 1.66e-21 87.8
MS.gene28870.t1 AT4G35860 28.177 181 116 5 1 179 1 169 2.35e-21 87.8
MS.gene28870.t1 AT4G17530 31.551 187 109 7 6 185 8 182 2.59e-21 87.4
MS.gene28870.t1 AT3G11730 30.539 167 102 5 6 170 8 162 4.20e-21 87.0
MS.gene28870.t1 AT4G39890 34.731 167 92 6 8 170 11 164 4.55e-21 87.0
MS.gene28870.t1 AT5G47200 31.868 182 105 7 6 180 8 177 5.83e-21 86.3
MS.gene28870.t1 AT1G09630 34.667 150 88 4 6 146 12 160 1.18e-20 85.9
MS.gene28870.t1 AT4G19640 37.705 122 73 3 8 127 12 132 1.76e-20 84.0
MS.gene28870.t1 AT1G18200 29.834 181 113 5 6 184 13 181 2.24e-20 85.5
MS.gene28870.t1 AT3G09900 31.383 188 116 6 6 191 15 191 2.88e-20 85.1
MS.gene28870.t1 AT4G18430 34.132 167 96 5 6 170 13 167 2.95e-20 84.7
MS.gene28870.t1 AT2G22290 33.333 165 96 5 8 170 11 163 3.01e-20 84.7
MS.gene28870.t1 AT4G17170 27.907 172 110 5 1 170 1 160 3.62e-20 84.3
MS.gene28870.t1 AT4G19640 37.705 122 73 3 8 127 12 132 5.16e-20 83.6
MS.gene28870.t1 AT1G73640 31.492 181 110 5 6 184 13 181 5.23e-20 84.7
MS.gene28870.t1 AT3G07410 31.579 190 116 5 6 193 12 189 5.76e-20 84.0
MS.gene28870.t1 AT2G31680 30.159 189 118 4 6 192 12 188 1.18e-19 83.2
MS.gene28870.t1 AT1G06400 31.892 185 109 6 6 188 13 182 1.19e-19 83.2
MS.gene28870.t1 AT3G12160 33.333 165 96 5 8 170 17 169 1.25e-19 83.2
MS.gene28870.t1 AT2G43130 29.630 189 119 5 6 192 12 188 1.27e-19 83.2
MS.gene28870.t1 AT5G03520 31.383 188 116 6 6 191 15 191 1.54e-19 82.8
MS.gene28870.t1 AT4G17160 26.744 172 112 5 1 170 1 160 1.93e-19 82.4
MS.gene28870.t1 AT4G18800 36.667 120 73 3 6 123 13 131 2.91e-19 82.0
MS.gene28870.t1 AT3G15060 30.726 179 110 5 8 184 15 181 6.81e-19 81.3
MS.gene28870.t1 AT5G10260 32.121 165 98 5 8 170 11 163 1.10e-18 80.5
MS.gene28870.t1 AT1G05810 30.159 189 118 5 6 192 12 188 1.24e-18 80.5
MS.gene28870.t1 AT3G18820 30.108 186 115 6 6 185 8 184 1.27e-18 80.5
MS.gene28870.t1 AT1G05810 30.159 189 118 5 6 192 58 234 1.55e-18 81.3
MS.gene28870.t1 AT5G45750 35.833 120 74 3 6 123 13 131 1.96e-18 80.1
MS.gene28870.t1 AT5G60860 29.834 181 113 5 6 184 13 181 2.15e-18 80.1
MS.gene28870.t1 AT5G64990 33.333 165 96 5 8 170 9 161 3.27e-18 79.3
MS.gene28870.t1 AT1G01200 34.337 166 94 6 8 170 30 183 5.43e-18 79.3
MS.gene28870.t1 AT5G47520 28.652 178 113 5 2 177 10 175 8.12e-18 78.6
MS.gene28870.t1 AT1G28550 36.667 120 73 3 6 123 13 131 1.23e-17 77.8
MS.gene28870.t1 AT1G07410 35.294 119 74 3 6 122 12 129 2.12e-17 77.4
MS.gene28870.t1 AT5G59150 29.825 171 106 6 6 174 12 170 2.21e-17 77.4
MS.gene28870.t1 AT2G21880 27.717 184 120 4 6 184 9 184 2.65e-17 77.0
MS.gene28870.t1 AT4G39990 28.495 186 117 6 8 190 19 191 4.05e-17 76.6
MS.gene28870.t1 AT2G33870 36.975 119 72 3 6 122 13 130 4.28e-17 76.6
MS.gene28870.t1 AT5G47960 34.188 117 74 3 8 122 17 132 4.51e-17 76.6
MS.gene28870.t1 AT5G65270 28.889 180 112 6 8 184 19 185 7.80e-17 75.9
MS.gene28870.t1 AT1G22740 28.646 192 120 6 1 184 1 183 9.44e-17 75.5
MS.gene28870.t1 AT3G46830 33.613 119 76 3 6 122 12 129 2.57e-16 74.3
MS.gene28870.t1 AT3G46830 33.613 119 76 3 6 122 12 129 2.57e-16 74.3
MS.gene28870.t1 AT1G52280 30.726 179 107 7 1 171 1 170 3.16e-16 73.9
MS.gene28870.t1 AT5G27540 25.862 174 121 2 7 180 18 183 3.52e-16 76.3
MS.gene28870.t1 AT5G27540 25.862 174 121 2 7 180 18 183 3.52e-16 76.3
MS.gene28870.t1 AT3G16100 29.016 193 120 7 1 185 1 184 6.39e-16 73.2
MS.gene28870.t1 AT4G09720 30.994 171 103 6 6 170 8 169 1.32e-15 72.4
MS.gene28870.t1 AT5G64990 31.977 172 96 6 8 170 9 168 1.44e-15 72.4
MS.gene28870.t1 AT3G09910 28.249 177 112 5 8 181 15 179 1.70e-15 72.0
MS.gene28870.t1 AT3G09910 28.249 177 112 5 8 181 15 179 1.70e-15 72.0
MS.gene28870.t1 AT3G09910 28.249 177 112 5 8 181 15 179 1.70e-15 72.0
MS.gene28870.t1 AT1G49300 30.409 171 104 6 6 170 8 169 3.01e-15 71.2
MS.gene28870.t1 AT1G49300 30.409 171 104 6 6 170 8 169 3.01e-15 71.2
MS.gene28870.t1 AT5G55080 30.769 117 79 2 7 122 14 129 3.31e-15 71.6
MS.gene28870.t1 AT3G09910 28.889 180 110 6 8 181 15 182 1.10e-14 69.7
MS.gene28870.t1 AT3G09910 28.889 180 110 6 8 181 15 182 1.10e-14 69.7
MS.gene28870.t1 AT3G63150 30.114 176 111 6 7 180 15 180 2.44e-14 71.2
MS.gene28870.t1 AT5G20020 28.485 165 103 4 7 170 14 164 2.69e-14 68.9
MS.gene28870.t1 AT4G09720 28.977 176 105 5 6 170 8 174 3.28e-14 68.6
MS.gene28870.t1 AT5G55190 28.485 165 103 4 7 170 14 164 3.37e-14 68.9
MS.gene28870.t1 AT5G20010 28.485 165 103 4 7 170 14 164 3.74e-14 68.6
MS.gene28870.t1 AT4G09720 28.022 182 105 5 6 170 8 180 2.66e-13 66.2
MS.gene28870.t1 AT5G03520 30.137 146 90 5 47 191 47 181 3.17e-13 65.9
MS.gene28870.t1 AT5G39620 27.322 183 118 5 7 183 6 179 6.75e-13 65.1
MS.gene28870.t1 AT4G35860 26.119 134 86 4 47 179 2 123 2.09e-12 62.8
MS.gene28870.t1 AT2G21880 25.749 167 111 4 23 184 1 159 5.43e-11 59.3
MS.gene28870.t1 AT2G21880 25.749 167 111 4 23 184 1 159 5.43e-11 59.3

Find 45 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGAAAATGTTTCTAAAA+AGG 0.255465 8.2:-29824058 MS.gene28870:intron
CTTTGTGCCAACCAGAATAA+TGG 0.304891 8.2:+29823822 None:intergenic
ACCTGGTGTTCCCATTATTC+TGG 0.347919 8.2:-29823833 MS.gene28870:CDS
GAATGGAAGCACTGTGAATC+TGG 0.355358 8.2:-29824268 MS.gene28870:CDS
TTCACCTGAGCGGTGGTAAT+AGG 0.380693 8.2:+29822317 None:intergenic
TGGTTGAAGGACAACTCTTA+TGG 0.386728 8.2:+29822001 None:intergenic
GAAAGAAGATGAGCGCTTCC+AGG 0.391553 8.2:-29825265 None:intergenic
TCATCAAGTGTGTTACTGTT+GGG 0.391822 8.2:-29825241 MS.gene28870:CDS
AAAGAAGAGTAAAGCTCAAA+AGG 0.404647 8.2:-29821964 MS.gene28870:CDS
CACAGTGGGGAAGGTATTGC+TGG 0.423554 8.2:+29825178 None:intergenic
TTTGTGCCAACCAGAATAAT+GGG 0.430326 8.2:+29823823 None:intergenic
TTGAAATGAGACAGACCTTC+GGG 0.436373 8.2:-29822378 MS.gene28870:intron
CACTGTGAATCTGGGTTTGT+GGG 0.441336 8.2:-29824259 MS.gene28870:CDS
AGTGCAAATGTGGTTGTGAA+TGG 0.466304 8.2:-29824285 MS.gene28870:CDS
TTCATCAAGTGTGTTACTGT+TGG 0.472314 8.2:-29825242 MS.gene28870:CDS
GGTGCATAATGCTTCAACTC+TGG 0.481713 8.2:+29823853 None:intergenic
CAGTTCTTTGTCGACCATCC+TGG 0.485725 8.2:-29822347 MS.gene28870:CDS
AGCAAATCACAATATCGAAC+AGG 0.488579 8.2:+29821941 None:intergenic
GAACTGCATTCAATATAAGC+AGG 0.495522 8.2:+29822156 None:intergenic
GGTGTTCCCATTATTCTGGT+TGG 0.501900 8.2:-29823829 MS.gene28870:CDS
ATTCTGGTTGGCACAAAGCT+TGG 0.504446 8.2:-29823817 MS.gene28870:intron
TCTTGAAGGGAGAAGAGCTC+AGG 0.509266 8.2:-29822194 MS.gene28870:intron
CGCTTTCTCACTCATAAGCA+AGG 0.527969 8.2:-29824085 MS.gene28870:CDS
CTTGAAATGAGACAGACCTT+CGG 0.529221 8.2:-29822379 MS.gene28870:intron
CTGAAATTGTCGAAGACAGT+TGG 0.537778 8.2:+29824306 None:intergenic
CTGGGTTTGTGGGACACTGC+AGG 0.543142 8.2:-29824249 MS.gene28870:intron
TTCTTGTGAAACAGGACAAG+AGG 0.543155 8.2:-29824160 MS.gene28870:intron
GCACTGTGAATCTGGGTTTG+TGG 0.545979 8.2:-29824260 MS.gene28870:CDS
TGTTCCTATTACCACCGCTC+AGG 0.553664 8.2:-29822321 MS.gene28870:intron
CGACAATTTCAGTGCAAATG+TGG 0.560089 8.2:-29824295 MS.gene28870:CDS
ACTGTTGGGGATGGAGCTGT+TGG 0.567138 8.2:-29825227 MS.gene28870:CDS
AGTAACACACTTGATGAACC+TGG 0.577147 8.2:+29825247 None:intergenic
CACAATATTCACCTGAGCGG+TGG 0.588643 8.2:+29822310 None:intergenic
CATCAAGTGTGTTACTGTTG+GGG 0.592671 8.2:-29825240 MS.gene28870:CDS
TTAAGACCTTTGAGTTATCG+TGG 0.598742 8.2:-29824126 MS.gene28870:CDS
ATGCAGTTCAAAATCACAGC+AGG 0.601412 8.2:-29822142 MS.gene28870:intron
AATGGAAGCACTGTGAATCT+GGG 0.602680 8.2:-29824267 MS.gene28870:CDS
AAGTGTGTTACTGTTGGGGA+TGG 0.603907 8.2:-29825236 MS.gene28870:CDS
GAGTTGAAGCATTATGCACC+TGG 0.616427 8.2:-29823850 MS.gene28870:CDS
ACCAGAATAATGGGAACACC+AGG 0.622688 8.2:+29823832 None:intergenic
GTGGTAATAGGAACAGCACC+AGG 0.638537 8.2:+29822329 None:intergenic
TAATAGGAACAGCACCAGGA+TGG 0.658624 8.2:+29822333 None:intergenic
AGAACTGCTTGTCATCCCGA+AGG 0.663377 8.2:+29822363 None:intergenic
TCAGCACCACGATAACTCAA+AGG 0.665908 8.2:+29824120 None:intergenic
AAACACAATATTCACCTGAG+CGG 0.759772 8.2:+29822307 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAGAATTATCAATAA+TGG + chr8.2:29823752-29823771 None:intergenic 10.0%
!! TAAAAAGAATTATCAATAAT+GGG + chr8.2:29823751-29823770 None:intergenic 10.0%
!! TAAACAAAAACAAATAAAAA+GGG + chr8.2:29822634-29822653 None:intergenic 10.0%
!! TTAAACAAAAACAAATAAAA+AGG + chr8.2:29822635-29822654 None:intergenic 10.0%
!!! ATATTCCAAAATATTTTATA+TGG - chr8.2:29824270-29824289 MS.gene28870:CDS 10.0%
!! AAACAAAAACAAATAAAAAG+GGG + chr8.2:29822633-29822652 None:intergenic 15.0%
!! AGTATTTGACATTAATTAAA+AGG - chr8.2:29824621-29824640 MS.gene28870:intron 15.0%
!! ATAAGAAGATTAAAAAGAAA+AGG + chr8.2:29822067-29822086 None:intergenic 15.0%
!! GTATTTGACATTAATTAAAA+GGG - chr8.2:29824622-29824641 MS.gene28870:intron 15.0%
!! TAAGAAGATTAAAAAGAAAA+GGG + chr8.2:29822066-29822085 None:intergenic 15.0%
!! TTATGTGTTATCAAATTAAT+TGG - chr8.2:29822089-29822108 MS.gene28870:intron 15.0%
!!! GTAATTTGGATTTTATTTTT+TGG - chr8.2:29822125-29822144 MS.gene28870:intron 15.0%
!!! TTATGAAAATGTTTCTAAAA+AGG - chr8.2:29823146-29823165 MS.gene28870:intron 15.0%
!! AAAACTGCTTATAACTTATA+GGG - chr8.2:29824054-29824073 MS.gene28870:intron 20.0%
!! AAACATGAGAAAATTGAATT+TGG - chr8.2:29822344-29822363 MS.gene28870:CDS 20.0%
!! AAATACTTGTGAGATTATTT+GGG - chr8.2:29823953-29823972 MS.gene28870:intron 20.0%
!! AGTATGAAAACAAATTAACA+AGG + chr8.2:29824929-29824948 None:intergenic 20.0%
!! CAAATATAGAAATACTATCT+TGG - chr8.2:29823537-29823556 MS.gene28870:intron 20.0%
!! CAAATGAAATAATTAGATTC+TGG - chr8.2:29822734-29822753 MS.gene28870:intron 20.0%
!! GAATTGAAATTTCAGTAATT+TGG - chr8.2:29822111-29822130 MS.gene28870:intron 20.0%
!! TAAATACTTGTGAGATTATT+TGG - chr8.2:29823952-29823971 MS.gene28870:intron 20.0%
!! TGAAAATTATCTCAATTCAA+AGG - chr8.2:29822396-29822415 MS.gene28870:intron 20.0%
!!! AAAAGTGCATTTTAAAAACA+TGG + chr8.2:29823213-29823232 None:intergenic 20.0%
!!! AAAGTGCATTTTAAAAACAT+GGG + chr8.2:29823212-29823231 None:intergenic 20.0%
!!! AAGTTGTTACTTTAGAATTT+TGG - chr8.2:29824562-29824581 MS.gene28870:intron 20.0%
!!! AATGTTTTTCAAAACAGTTA+TGG - chr8.2:29824156-29824175 MS.gene28870:intron 20.0%
!!! ATAACTGTTTTGAAAAACAT+TGG + chr8.2:29824157-29824176 None:intergenic 20.0%
!!! ATTAGTTAACAAGTGTTTTA+AGG - chr8.2:29823640-29823659 MS.gene28870:intron 20.0%
!!! CAAGATAGTATTTCTATATT+TGG + chr8.2:29823539-29823558 None:intergenic 20.0%
!!! CCAAAATATTTTATATGGTA+GGG - chr8.2:29824275-29824294 MS.gene28870:CDS 20.0%
!!! TCCAAAATATTTTATATGGT+AGG - chr8.2:29824274-29824293 MS.gene28870:CDS 20.0%
!!! TTAGTTAACAAGTGTTTTAA+GGG - chr8.2:29823641-29823660 MS.gene28870:intron 20.0%
!!! TTATTGTTATGATCGTTTTT+GGG - chr8.2:29822153-29822172 MS.gene28870:CDS 20.0%
!!! TTTAGAAACATTTTCATAAC+TGG + chr8.2:29823145-29823164 None:intergenic 20.0%
! AAACCACACATTCATATAAA+AGG + chr8.2:29823244-29823263 None:intergenic 25.0%
! AAATGAAAGCTTATAAGAGA+AGG + chr8.2:29823884-29823903 None:intergenic 25.0%
! AACCACACATTCATATAAAA+GGG + chr8.2:29823243-29823262 None:intergenic 25.0%
! AATGAAAGCTTATAAGAGAA+GGG + chr8.2:29823883-29823902 None:intergenic 25.0%
! ATTTATTTCCAATGTTTGTG+TGG - chr8.2:29822319-29822338 MS.gene28870:intron 25.0%
! CAACACCTAAAACTTAAATA+AGG + chr8.2:29824366-29824385 None:intergenic 25.0%
! CATATATGATAATAAGGCAT+CGG + chr8.2:29822806-29822825 None:intergenic 25.0%
! CATTTGGTTAATGATGTTTA+CGG - chr8.2:29822229-29822248 MS.gene28870:intron 25.0%
! GAAAACTGCTTATAACTTAT+AGG - chr8.2:29824053-29824072 MS.gene28870:intron 25.0%
! GACATTAATTAAAAGGGAAA+TGG - chr8.2:29824628-29824647 MS.gene28870:intron 25.0%
! TAAGCTTTCATTTCAATTCA+AGG - chr8.2:29823891-29823910 MS.gene28870:intron 25.0%
! TACAATATCAGATGTTACAT+TGG + chr8.2:29823428-29823447 None:intergenic 25.0%
! TAGTTATAGATGTTGACATT+TGG - chr8.2:29822213-29822232 MS.gene28870:intron 25.0%
! TCTTTATAAACTGGAATGAA+TGG - chr8.2:29823263-29823282 MS.gene28870:intron 25.0%
! TGGAAGAATAAAAAACTGTT+TGG + chr8.2:29824137-29824156 None:intergenic 25.0%
! TGTTAACCCCAAATAATAAA+AGG + chr8.2:29822550-29822569 None:intergenic 25.0%
! TTATAAGAGAAGGGAAAAAA+AGG + chr8.2:29823874-29823893 None:intergenic 25.0%
! TTCTAGCGTATAAACTAATA+AGG - chr8.2:29823474-29823493 MS.gene28870:intron 25.0%
!! AATGTTTCAAGCTTTTAGAT+TGG - chr8.2:29822579-29822598 MS.gene28870:intron 25.0%
!! AGATTTTCATATCTTCTTGA+AGG - chr8.2:29824996-29825015 MS.gene28870:intron 25.0%
!! CCCTACCATATAAAATATTT+TGG + chr8.2:29824278-29824297 None:intergenic 25.0%
!! GATTTTCATATCTTCTTGAA+GGG - chr8.2:29824997-29825016 MS.gene28870:intron 25.0%
!! GGTTCATCCTTTTATTATTT+GGG - chr8.2:29822540-29822559 MS.gene28870:intron 25.0%
!! GTTATTGTTATGATCGTTTT+TGG - chr8.2:29822152-29822171 MS.gene28870:CDS 25.0%
!! GTTCATCCTTTTATTATTTG+GGG - chr8.2:29822541-29822560 MS.gene28870:intron 25.0%
!! TGATGAATTCAACTTTCTTT+TGG - chr8.2:29824404-29824423 MS.gene28870:intron 25.0%
!! TGGTTCATCCTTTTATTATT+TGG - chr8.2:29822539-29822558 MS.gene28870:intron 25.0%
!! TTATTAGTTTATACGCTAGA+AGG + chr8.2:29823475-29823494 None:intergenic 25.0%
!!! CTCATCCTTATTTAAGTTTT+AGG - chr8.2:29824358-29824377 MS.gene28870:intron 25.0%
!!! GTTACTTTAGAATTTTGGTT+TGG - chr8.2:29824567-29824586 MS.gene28870:intron 25.0%
!!! TATTGTTTTTCTTGTGAAAC+AGG - chr8.2:29823036-29823055 MS.gene28870:intron 25.0%
AAAATGAAAAAGCTCACAGT+GGG + chr8.2:29822043-29822062 None:intergenic 30.0%
AAAGAAGAGTAAAGCTCAAA+AGG - chr8.2:29825240-29825259 MS.gene28870:CDS 30.0%
AACAGTAAAAGAACATGCAA+AGG + chr8.2:29824769-29824788 None:intergenic 30.0%
AAGTTACTCTTTAGTAAGAC+TGG + chr8.2:29823795-29823814 None:intergenic 30.0%
ACATATTTGAGCTTATCTAC+TGG - chr8.2:29823927-29823946 MS.gene28870:intron 30.0%
ACCTATTAAGGTGAATAAGT+GGG - chr8.2:29822446-29822465 MS.gene28870:intron 30.0%
AGCGCACATATATGATAATA+AGG + chr8.2:29822812-29822831 None:intergenic 30.0%
ATGTTTAACCACACAAACAT+TGG + chr8.2:29822330-29822349 None:intergenic 30.0%
ATGTTTACGGAAAATTGAGT+TGG - chr8.2:29822242-29822261 MS.gene28870:intron 30.0%
ATTTCAATTCAAGGTCTCTT+TGG - chr8.2:29823900-29823919 MS.gene28870:intron 30.0%
GAAAATTACGATGAATGATG+TGG - chr8.2:29822690-29822709 MS.gene28870:intron 30.0%
GGAATATATAGAGACAAGAA+AGG + chr8.2:29824257-29824276 None:intergenic 30.0%
TCTCCAAATAGAGCAAAAAA+TGG + chr8.2:29824720-29824739 None:intergenic 30.0%
TGAACTTATGAACACAACTT+TGG - chr8.2:29823976-29823995 MS.gene28870:intron 30.0%
TGTGTGGTTTCTTTATAAAC+TGG - chr8.2:29823254-29823273 MS.gene28870:intron 30.0%
TTCAAGTCACAAGATAGTTA+AGG + chr8.2:29824811-29824830 None:intergenic 30.0%
! CTCTTCTTTTTCTTTTGCTT+TGG + chr8.2:29825229-29825248 None:intergenic 30.0%
! TTCCCTTTTATATGAATGTG+TGG - chr8.2:29823238-29823257 MS.gene28870:intron 30.0%
! TTCTTTTTCTTTTGCTTTGG+TGG + chr8.2:29825226-29825245 None:intergenic 30.0%
! TTGCATCTTTTCACTTTGTT+TGG - chr8.2:29822860-29822879 MS.gene28870:intron 30.0%
!! GAATTATCAATAATGGGTCA+TGG + chr8.2:29823745-29823764 None:intergenic 30.0%
!! TTTTAAAAACATGGGACACA+AGG + chr8.2:29823204-29823223 None:intergenic 30.0%
!! TTTTCACTTTGTTTGGTAAC+AGG - chr8.2:29822867-29822886 MS.gene28870:intron 30.0%
!!! ATATGGTCTTGTTGTTTTGT+TGG - chr8.2:29824223-29824242 MS.gene28870:intron 30.0%
!!! ATGCCATTTTTTGCTCTATT+TGG - chr8.2:29824714-29824733 MS.gene28870:intron 30.0%
AAACACAATATTCACCTGAG+CGG + chr8.2:29824900-29824919 None:intergenic 35.0%
AAAGAGTAACTTCTTGCTTC+CGG - chr8.2:29823803-29823822 MS.gene28870:intron 35.0%
AAATGAAAAAGCTCACAGTG+GGG + chr8.2:29822042-29822061 None:intergenic 35.0%
AAGGGGAAGATAACAACAAA+AGG + chr8.2:29822616-29822635 None:intergenic 35.0%
AGAATCTAATGACACGTAGA+AGG + chr8.2:29822772-29822791 None:intergenic 35.0%
AGGGAAATGGTCATTAATGA+TGG - chr8.2:29824641-29824660 MS.gene28870:intron 35.0%
CAAAGGAAATTCTAGTCTAG+TGG - chr8.2:29822413-29822432 MS.gene28870:intron 35.0%
CACCTATTAAGGTGAATAAG+TGG - chr8.2:29822445-29822464 MS.gene28870:intron 35.0%
CCTATTAAGGTGAATAAGTG+GGG - chr8.2:29822447-29822466 MS.gene28870:intron 35.0%
CTTTCTTGTCTCTCTCTATA+TGG - chr8.2:29824206-29824225 MS.gene28870:intron 35.0%
GAAAATGAAAAAGCTCACAG+TGG + chr8.2:29822044-29822063 None:intergenic 35.0%
GAACTGCATTCAATATAAGC+AGG + chr8.2:29825051-29825070 None:intergenic 35.0%
GCACTGTGTACATTGTAAAA+AGG + chr8.2:29823003-29823022 None:intergenic 35.0%
GGCTAGAAATTCACCTATTA+AGG - chr8.2:29822434-29822453 MS.gene28870:intron 35.0%
GTTTCTTAACATGTGCCTTT+GGG + chr8.2:29823517-29823536 None:intergenic 35.0%
TCAGGTGAATATTGTGTTTC+TGG - chr8.2:29824901-29824920 MS.gene28870:intron 35.0%
TTTCTTAACATGTGCCTTTG+GGG + chr8.2:29823516-29823535 None:intergenic 35.0%
TTTGTGCCAACCAGAATAAT+GGG + chr8.2:29823384-29823403 None:intergenic 35.0%
! TCATCAAGTGTGTTACTGTT+GGG - chr8.2:29821963-29821982 MS.gene28870:CDS 35.0%
! TTAAGACCTTTGAGTTATCG+TGG - chr8.2:29823078-29823097 MS.gene28870:intron 35.0%
! TTCATCAAGTGTGTTACTGT+TGG - chr8.2:29821962-29821981 MS.gene28870:CDS 35.0%
! TTCTACGTGTCATTAGATTC+TGG - chr8.2:29822771-29822790 MS.gene28870:intron 35.0%
! TTGAATTTGGAATGTTTGCG+TGG - chr8.2:29822357-29822376 MS.gene28870:CDS 35.0%
!! CATAAACTCTGAAACACAGT+GGG + chr8.2:29823179-29823198 None:intergenic 35.0%
!! TTGTTATGATCGTTTTTGGG+TGG - chr8.2:29822156-29822175 MS.gene28870:CDS 35.0%
!!! CATTTTTAGTGAGAATGACG+TGG + chr8.2:29824597-29824616 None:intergenic 35.0%
!!! TTTTGGTTTCTTCTTGACAC+CGG - chr8.2:29824421-29824440 MS.gene28870:intron 35.0%
AACTTCTTGCTTCCGGTAAA+GGG - chr8.2:29823810-29823829 MS.gene28870:intron 40.0%
AAGCTTGGTAGGTCTATTTC+TGG - chr8.2:29823402-29823421 MS.gene28870:intron 40.0%
AATGATGGCATGATGCAGTA+TGG - chr8.2:29824656-29824675 MS.gene28870:intron 40.0%
AATGTTAACATGTGCCCCAA+AGG - chr8.2:29823499-29823518 MS.gene28870:intron 40.0%
ACTTTCTAGACGCAAGTACA+TGG + chr8.2:29824503-29824522 None:intergenic 40.0%
AGTAACACACTTGATGAACC+TGG + chr8.2:29821960-29821979 None:intergenic 40.0%
AGTGCAAATGTGGTTGTGAA+TGG - chr8.2:29822919-29822938 MS.gene28870:intron 40.0%
ATGCAGTTCAAAATCACAGC+AGG - chr8.2:29825062-29825081 MS.gene28870:intron 40.0%
ATGTTGCAATATGTAGGAGC+CGG + chr8.2:29822490-29822509 None:intergenic 40.0%
CCCCACTTATTCACCTTAAT+AGG + chr8.2:29822450-29822469 None:intergenic 40.0%
CGACAATTTCAGTGCAAATG+TGG - chr8.2:29822909-29822928 MS.gene28870:intron 40.0%
CTGAAATTGTCGAAGACAGT+TGG + chr8.2:29822901-29822920 None:intergenic 40.0%
CTTGAAATGAGACAGACCTT+CGG - chr8.2:29824825-29824844 MS.gene28870:intron 40.0%
CTTTGTGCCAACCAGAATAA+TGG + chr8.2:29823385-29823404 None:intergenic 40.0%
GGTTTCTTAACATGTGCCTT+TGG + chr8.2:29823518-29823537 None:intergenic 40.0%
GTAGGGATGTTGCAATATGT+AGG + chr8.2:29822496-29822515 None:intergenic 40.0%
GTCATTAGATTCTGGCATTG+TGG - chr8.2:29822779-29822798 MS.gene28870:intron 40.0%
TAACTTCTTGCTTCCGGTAA+AGG - chr8.2:29823809-29823828 MS.gene28870:intron 40.0%
TCTTCTTGACACCGGATAAA+AGG - chr8.2:29824429-29824448 MS.gene28870:intron 40.0%
TGAGCATAGCTCAATTGGTA+GGG + chr8.2:29822513-29822532 None:intergenic 40.0%
TGGCATGCAAGTTATTCACA+TGG + chr8.2:29824700-29824719 None:intergenic 40.0%
TGGTTGAAGGACAACTCTTA+TGG + chr8.2:29825206-29825225 None:intergenic 40.0%
TGTACTTGCGTCTAGAAAGT+AGG - chr8.2:29824503-29824522 MS.gene28870:intron 40.0%
TGTTACCTTCTTGTACACGA+CGG - chr8.2:29825102-29825121 MS.gene28870:intron 40.0%
TTCTTGTGAAACAGGACAAG+AGG - chr8.2:29823044-29823063 MS.gene28870:intron 40.0%
TTGAAATGAGACAGACCTTC+GGG - chr8.2:29824826-29824845 MS.gene28870:intron 40.0%
TTGCGTCTAGAAAGTAGGAA+GGG - chr8.2:29824508-29824527 MS.gene28870:intron 40.0%
! ACTGCCTAATGCCTTTTATC+CGG + chr8.2:29824443-29824462 None:intergenic 40.0%
! CATCAAGTGTGTTACTGTTG+GGG - chr8.2:29821964-29821983 MS.gene28870:CDS 40.0%
!! AATGGAAGCACTGTGAATCT+GGG - chr8.2:29822937-29822956 MS.gene28870:intron 40.0%
!! GCATAAACTCTGAAACACAG+TGG + chr8.2:29823180-29823199 None:intergenic 40.0%
!! TCTTTTGCTTTGGTGGTTGA+AGG + chr8.2:29825219-29825238 None:intergenic 40.0%
ACAATGTACACAGTGCTGTC+TGG - chr8.2:29823007-29823026 MS.gene28870:intron 45.0%
ACCAATTGAGCTATGCTCAC+AGG - chr8.2:29822514-29822533 MS.gene28870:intron 45.0%
ACCTGGTGTTCCCATTATTC+TGG - chr8.2:29823371-29823390 MS.gene28870:intron 45.0%
ACTTCTTGCTTCCGGTAAAG+GGG - chr8.2:29823811-29823830 MS.gene28870:intron 45.0%
AGGTGAATAAGTGGGGAATC+CGG - chr8.2:29822454-29822473 MS.gene28870:intron 45.0%
CACTGTGAATCTGGGTTTGT+GGG - chr8.2:29822945-29822964 MS.gene28870:intron 45.0%
CGCTTTCTCACTCATAAGCA+AGG - chr8.2:29823119-29823138 MS.gene28870:intron 45.0%
CTTAACCGTCGTGTACAAGA+AGG + chr8.2:29825110-29825129 None:intergenic 45.0%
CTTGCGTCTAGAAAGTAGGA+AGG - chr8.2:29824507-29824526 MS.gene28870:intron 45.0%
GGTGCATAATGCTTCAACTC+TGG + chr8.2:29823354-29823373 None:intergenic 45.0%
GGTGTTCCCATTATTCTGGT+TGG - chr8.2:29823375-29823394 MS.gene28870:intron 45.0%
GTAAAGGGGTGAACTGTGAA+GGG - chr8.2:29823825-29823844 MS.gene28870:CDS 45.0%
GTGAGCATAGCTCAATTGGT+AGG + chr8.2:29822514-29822533 None:intergenic 45.0%
TAATAGGAACAGCACCAGGA+TGG + chr8.2:29824874-29824893 None:intergenic 45.0%
TCAGCACCACGATAACTCAA+AGG + chr8.2:29823087-29823106 None:intergenic 45.0%
TCCTGTGAGCATAGCTCAAT+TGG + chr8.2:29822518-29822537 None:intergenic 45.0%
TCTAGAAAGTAGGAAGGGAG+TGG - chr8.2:29824513-29824532 MS.gene28870:intron 45.0%
TGTTGCAATATGTAGGAGCC+GGG + chr8.2:29822489-29822508 None:intergenic 45.0%
TTCACAGTTCACCCCTTTAC+CGG + chr8.2:29823825-29823844 None:intergenic 45.0%
! AAGTGTGTTACTGTTGGGGA+TGG - chr8.2:29821968-29821987 MS.gene28870:CDS 45.0%
! ACCAGAATAATGGGAACACC+AGG + chr8.2:29823375-29823394 None:intergenic 45.0%
! ATTCTGGTTGGCACAAAGCT+TGG - chr8.2:29823387-29823406 MS.gene28870:intron 45.0%
! GAGTTGAAGCATTATGCACC+TGG - chr8.2:29823354-29823373 MS.gene28870:intron 45.0%
!! GAATGGAAGCACTGTGAATC+TGG - chr8.2:29822936-29822955 MS.gene28870:intron 45.0%
!! GACACCGGATAAAAGGCATT+AGG - chr8.2:29824436-29824455 MS.gene28870:intron 45.0%
!! AAAAAAAAAAAAAATAGAAT+AGG + chr8.2:29823619-29823638 None:intergenic 5.0%
ACGTGCTGTCTCATTTCCAG+TGG - chr8.2:29823325-29823344 MS.gene28870:intron 50.0%
AGAACTGCTTGTCATCCCGA+AGG + chr8.2:29824844-29824863 None:intergenic 50.0%
CACAATATTCACCTGAGCGG+TGG + chr8.2:29824897-29824916 None:intergenic 50.0%
CAGTTCTTTGTCGACCATCC+TGG - chr8.2:29824857-29824876 MS.gene28870:intron 50.0%
GAAAAAGCTCACAGTGGGGA+AGG + chr8.2:29822038-29822057 None:intergenic 50.0%
GCACTGTGAATCTGGGTTTG+TGG - chr8.2:29822944-29822963 MS.gene28870:intron 50.0%
GGTAAAGGGGTGAACTGTGA+AGG - chr8.2:29823824-29823843 MS.gene28870:CDS 50.0%
GGTGAATAAGTGGGGAATCC+GGG - chr8.2:29822455-29822474 MS.gene28870:intron 50.0%
GTGAATAAGTGGGGAATCCG+GGG - chr8.2:29822456-29822475 MS.gene28870:intron 50.0%
GTGGTAATAGGAACAGCACC+AGG + chr8.2:29824878-29824897 None:intergenic 50.0%
GTTGCAATATGTAGGAGCCG+GGG + chr8.2:29822488-29822507 None:intergenic 50.0%
TCTTGAAGGGAGAAGAGCTC+AGG - chr8.2:29825010-29825029 MS.gene28870:intron 50.0%
TGGTTGGCACAAAGCTTGGT+AGG - chr8.2:29823391-29823410 MS.gene28870:intron 50.0%
TGTTCCTATTACCACCGCTC+AGG - chr8.2:29824883-29824902 MS.gene28870:intron 50.0%
TTCACCTGAGCGGTGGTAAT+AGG + chr8.2:29824890-29824909 None:intergenic 50.0%
TTGAGCTATGCTCACAGGAC+TGG - chr8.2:29822519-29822538 MS.gene28870:intron 50.0%
!! GCTTCAACTCTGGAATCCAC+TGG + chr8.2:29823344-29823363 None:intergenic 50.0%
ACTGTTGGGGATGGAGCTGT+TGG - chr8.2:29821977-29821996 MS.gene28870:CDS 55.0%
!! CACAGTGGGGAAGGTATTGC+TGG + chr8.2:29822029-29822048 None:intergenic 55.0%
CTGGGTTTGTGGGACACTGC+AGG - chr8.2:29822955-29822974 MS.gene28870:intron 60.0%
GGAATCCGGGGTTTGAACCC+CGG - chr8.2:29822468-29822487 MS.gene28870:intron 60.0%
AGGAGCCGGGGTTCAAACCC+CGG + chr8.2:29822476-29822495 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 29821947 29825279 29821947 ID=MS.gene28870
chr8.2 mRNA 29821947 29825279 29821947 ID=MS.gene28870.t1;Parent=MS.gene28870
chr8.2 exon 29825181 29825279 29825181 ID=MS.gene28870.t1.exon1;Parent=MS.gene28870.t1
chr8.2 CDS 29825181 29825279 29825181 ID=cds.MS.gene28870.t1;Parent=MS.gene28870.t1
chr8.2 exon 29824250 29824337 29824250 ID=MS.gene28870.t1.exon2;Parent=MS.gene28870.t1
chr8.2 CDS 29824250 29824337 29824250 ID=cds.MS.gene28870.t1;Parent=MS.gene28870.t1
chr8.2 exon 29824059 29824168 29824059 ID=MS.gene28870.t1.exon3;Parent=MS.gene28870.t1
chr8.2 CDS 29824059 29824168 29824059 ID=cds.MS.gene28870.t1;Parent=MS.gene28870.t1
chr8.2 exon 29823818 29823881 29823818 ID=MS.gene28870.t1.exon4;Parent=MS.gene28870.t1
chr8.2 CDS 29823818 29823881 29823818 ID=cds.MS.gene28870.t1;Parent=MS.gene28870.t1
chr8.2 exon 29822322 29822386 29822322 ID=MS.gene28870.t1.exon5;Parent=MS.gene28870.t1
chr8.2 CDS 29822322 29822386 29822322 ID=cds.MS.gene28870.t1;Parent=MS.gene28870.t1
chr8.2 exon 29822143 29822208 29822143 ID=MS.gene28870.t1.exon6;Parent=MS.gene28870.t1
chr8.2 CDS 29822143 29822208 29822143 ID=cds.MS.gene28870.t1;Parent=MS.gene28870.t1
chr8.2 exon 29821947 29822048 29821947 ID=MS.gene28870.t1.exon7;Parent=MS.gene28870.t1
chr8.2 CDS 29821947 29822048 29821947 ID=cds.MS.gene28870.t1;Parent=MS.gene28870.t1
Gene Sequence

>MS.gene28870

ATGAGCGCTTCCAGGTTCATCAAGTGTGTTACTGTTGGGGATGGAGCTGTTGGTAAAACTTGTTTGTTAATTTCATACACCAGCAATACCTTCCCCACTGTGAGCTTTTTCATTTTCCCTTTTCTTTTTAATCTTCTTATGTTTATGTGTTATCAAATTAATTGGAATTGAAATTTCAGTAATTTGGATTTTATTTTTTGGTGTTGTTATTGTTATGATCGTTTTTGGGTGGTGTTATGATTGTTGAATTCTAGCTATGAGAAATTTAGTTATAGATGTTGACATTTGGTTAATGATGTTTACGGAAAATTGAGTTGGTTTTCATTTTTTGTTTTAAAGAAACTTACATTTTGAGATGTAACAATTGACTTAATTTATTTCCAATGTTTGTGTGGTTAAACATGAGAAAATTGAATTTGGAATGTTTGCGTGGCAAAATATGAGAAAATTGAAAATTATCTCAATTCAAAGGAAATTCTAGTCTAGTGGCTAGAAATTCACCTATTAAGGTGAATAAGTGGGGAATCCGGGGTTTGAACCCCGGCTCCTACATATTGCAACATCCCTACCAATTGAGCTATGCTCACAGGACTGGTTCATCCTTTTATTATTTGGGGTTAACATATTTGTAGAATGTTTCAAGCTTTTAGATTGGATAATTCGTTTCCTTTTGTTGTTATCTTCCCCTTTTTATTTGTTTTTGTTTAAATTCTTTGATTTTTTTGTATGTTTTTTAAGAGTATGAAAATTACGATGAATGATGTGGATAATAATAAAGAAATTGTGACAAATGAAATAATTAGATTCTGGTACTAAATGTATCCTTCTACGTGTCATTAGATTCTGGCATTGTGGTCCGATGCCTTATTATCATATATGTGCGCTTGTTGAAAAAGATATATGATTGTTATTTTTGCATCTTTTCACTTTGTTTGGTAACAGGATTATGTGCCAACTGTCTTCGACAATTTCAGTGCAAATGTGGTTGTGAATGGAAGCACTGTGAATCTGGGTTTGTGGGACACTGCAGGTATCGTTATATAAATTTCTTTTCCTTTTTACAATGTACACAGTGCTGTCTGGATTTTTTATTGTTTTTCTTGTGAAACAGGACAAGAGGATTATAACAGATTAAGACCTTTGAGTTATCGTGGTGCTGATGTTTTCATTCTCGCTTTCTCACTCATAAGCAAGGCCAGTTATGAAAATGTTTCTAAAAAGGTACTTATCCCACTGTGTTTCAGAGTTTATGCTCCTTGTGTCCCATGTTTTTAAAATGCACTTTTGCATATTCCCTTTTATATGAATGTGTGGTTTCTTTATAAACTGGAATGAATGGTATACTGATTATATTATAAAAATTGATGATAAATTTCATACGTGCTGTCTCATTTCCAGTGGATTCCAGAGTTGAAGCATTATGCACCTGGTGTTCCCATTATTCTGGTTGGCACAAAGCTTGGTAGGTCTATTTCTGGCCAATGTAACATCTGATATTGTAAATTCATGCATTAGTCAGTTGCTTCCTTCTAGCGTATAAACTAATAAGGCAAATGTTAACATGTGCCCCAAAGGCACATGTTAAGAAACCAAATATAGAAATACTATCTTGGAAGTTGTGTATTCAGCATCTTGAATGTTTAAATATTGCTTTTTTCAACACAAAACTCCTATTCTATTTTTTTTTTTTTTAATTAGTTAACAAGTGTTTTAAGGGTGCATGTTAGCAAGATCTAATTTATGATGTTATACACAGTTTGTGCTATGAAAGCATATGATCTTAAATATATGAAGTCCATGACCCATTATTGATAATTCTTTTTATGTTAATATTTTAAATGATGACCAGTCTTACTAAAGAGTAACTTCTTGCTTCCGGTAAAGGGGTGAACTGTGAAGGGTTGTTTTACTAGTTCATCTTGTACCTTTTTTTCCCTTCTCTTATAAGCTTTCATTTCAATTCAAGGTCTCTTTGGATTGACATATTTGAGCTTATCTACTGGCATAAATACTTGTGAGATTATTTGGGTGAACTTATGAACACAACTTTGGCATGTTCATAAGTTGTTTTTAGCTTATTTTCATAAGCTCTCAAAGATAGCTTATGAAAACTGCTTATAACTTATAGGGAAACAATTTAACTTTATTTACAGAAACAACTTATAAGTTGCAAGTTAAGTTGCTTATCCAAACAGTTTTTTATTCTTCCAATGTTTTTCAAAACAGTTATGGTCATGTTTTTTGTTTGATATTACTCTTCTTTCTTGTCTCTCTCTATATGGTCTTGTTGTTTTGTTGGATATTACTCCTTTCTTGTCTCTATATATTCCAAAATATTTTATATGGTAGGGATTTTTATGTAAGTTTACATTTGCTGTCTTGTATTTGCTAATTAACACAGTTCACGCATACTCATCCTTATTTAAGTTTTAGGTGTTGTTGAACAACATGCATATTTGATGAATTCAACTTTCTTTTGGTTTCTTCTTGACACCGGATAAAAGGCATTAGGCAGTCTAGTACAATGCTAGAGATCTCAGCTATCAAGCTTGACCATGTACTTGCGTCTAGAAAGTAGGAAGGGAGTGGTTGTGAAATGCAAAAGTACAATTTGAAAGTTGTTACTTTAGAATTTTGGTTTGGACTACCACGTCATTCTCACTAAAAATGTTTTAGTATTTGACATTAATTAAAAGGGAAATGGTCATTAATGATGGCATGATGCAGTATGGCATCAATATTTTAGAATGCCATGTGAATAACTTGCATGCCATTTTTTGCTCTATTTGGAGAATGAATAATTTTAAAAGTATTTGTGACCTTTGCATGTTCTTTTACTGTTTTGTCAAATAAGAGCTGCTCCTTAACTATCTTGTGACTTGAAATGAGACAGACCTTCGGGATGACAAGCAGTTCTTTGTCGACCATCCTGGTGCTGTTCCTATTACCACCGCTCAGGTGAATATTGTGTTTCTGGTGCCTTGTTAATTTGTTTTCATACTTTTGCATGTTTGTAATCTATTTTAGCTTTTTAGTTAAATCAAATCTAAGATTTTCATATCTTCTTGAAGGGAGAAGAGCTCAGGAAGCTGATCAATGCACCTGCTTATATTGAATGCAGTTCAAAATCACAGCAGGTACATAATTGAATCTAGTGTTACCTTCTTGTACACGACGGTTAAGTTAATTAGTAATTTAGTCGTTTTAATTTGTTTATGTTTGTTACTGCAGAACGTCAAAGCAGTCTTTGATGCAGCCATAAGAGTTGTCCTTCAACCACCAAAGCAAAAGAAAAAGAAGAGTAAAGCTCAAAAGGCCTGTTCGATATTGTGA
Protein sequence

>MS.gene28870.t1

MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKLINAPAYIECSSKSQQNVKAVFDAAIRVVLQPPKQKKKKSKAQKACSIL