AlfalfaGEDB | MS.gene67475

M. sativa cultivar XinJiangDaYe / MS.gene67475

KEGG: K04392
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0007165 GO:0007264 GO:0008150 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035556 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0050789 GO:0050794 GO:0065007 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00071.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67475.t1	XP_003612214.1	100	197	0	0	1	197	1	197	1.60E-107	398.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67475.t1	Q35638	97.5	197	5	0	1	197	1	197	3.1e-107	389.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67475.t1	Q8S2V3	100.0	197	0	0	1	197	1	197	1.2e-107	398.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene00253	MS.gene67475	PPI
MS.gene012136	MS.gene67475	PPI
MS.gene031282	MS.gene67475	PPI
MS.gene031527	MS.gene67475	PPI
MS.gene038940	MS.gene67475	PPI
MS.gene044352	MS.gene67475	PPI
MS.gene057102	MS.gene67475	PPI
MS.gene064328	MS.gene67475	PPI
MS.gene071874	MS.gene67475	PPI
MS.gene074376	MS.gene67475	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67475.t1	MTR_5g022600	100.000	197	0	0	1	197	1	197	3.04e-147	407
MS.gene67475.t1	MTR_8g075240	97.462	197	5	0	1	197	1	197	1.39e-143	397
MS.gene67475.t1	MTR_4g073250	89.340	197	21	0	1	197	1	197	2.44e-133	372
MS.gene67475.t1	MTR_3g078260	77.835	194	42	1	2	194	4	197	1.79e-116	330
MS.gene67475.t1	MTR_2g090875	84.270	178	28	0	1	178	1	178	1.01e-115	327
MS.gene67475.t1	MTR_4g088055	84.831	178	27	0	1	178	1	178	6.46e-115	325
MS.gene67475.t1	MTR_6g087980	74.874	199	47	1	1	196	1	199	1.78e-111	317
MS.gene67475.t1	MTR_3g078260	86.555	119	16	0	2	120	4	122	4.03e-76	225
MS.gene67475.t1	MTR_7g103070	30.851	188	116	5	8	192	18	194	1.40e-25	98.6
MS.gene67475.t1	MTR_1g068740	31.383	188	116	6	6	191	15	191	9.67e-25	96.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67475.t1	AT2G17800	95.431	197	9	0	1	197	1	197	7.79e-128	358
MS.gene67475.t1	AT2G17800	95.431	197	9	0	1	197	1	197	7.79e-128	358
MS.gene67475.t1	AT3G51300	95.431	197	9	0	1	197	1	197	1.35e-127	357
MS.gene67475.t1	AT4G35950	95.939	197	8	0	1	197	1	197	1.36e-127	357
MS.gene67475.t1	AT4G35020	87.374	198	24	1	1	197	1	198	2.24e-124	349
MS.gene67475.t1	AT4G35020	87.374	198	24	1	1	197	1	198	2.24e-124	349
MS.gene67475.t1	AT4G35020	87.374	198	24	1	1	197	1	198	2.24e-124	349
MS.gene67475.t1	AT1G75840	91.573	178	15	0	1	178	1	178	5.14e-122	343
MS.gene67475.t1	AT1G20090	90.341	176	17	0	3	178	2	177	2.97e-119	336
MS.gene67475.t1	AT5G45970	86.034	179	25	0	1	179	1	179	1.64e-117	332

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Find 47 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGAATAAAGCACAAA+AGG	0.449553	5.1:+13607513	MS.gene67475:CDS
AAATGTGTTACTGTTGGTGA+TGG	0.556572	5.1:+13605316	MS.gene67475:CDS
AACCGTGGGGAAAGTATTGC+TGG	0.429322	5.1:-13605374	None:intergenic
AATGGAAGTATTGTGAATCT+GGG	0.518446	5.1:+13606165	MS.gene67475:CDS
ACCAGAATTATGGGGACACC+AGG	0.601533	5.1:-13606590	None:intergenic
ACCTGGTGTCCCCATAATTC+TGG	0.467734	5.1:+13606589	MS.gene67475:CDS
ACTGTTGGTGATGGAGCTGT+TGG	0.558196	5.1:+13605325	MS.gene67475:CDS
AGAACTGCTTATCATCCCGA+AGG	0.656406	5.1:-13607144	None:intergenic
AGTGAATTACAATATTGAAC+AGG	0.490190	5.1:-13607536	None:intergenic
AGTGCGAATGTGGTTGTTAA+TGG	0.319066	5.1:+13606147	MS.gene67475:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATACCAGTAGAAAAACAA+TGG	-	chr5.1:13606898-13606917	None:intergenic	30.0%
AGATTGAAATGGATACAATG+TGG	+	chr5.1:13605758-13605777	MS.gene67475:intron	30.0%
AGTTGATTATGAAATGCATG+GGG	-	chr5.1:13606733-13606752	None:intergenic	30.0%
ATTGTGTTTATTTGTGGAAC+AGG	+	chr5.1:13606271-13606290	MS.gene67475:intron	30.0%
CCAATTGCAAATACAATGTA+TGG	-	chr5.1:13606982-13607001	None:intergenic	30.0%
CCATACATTGTATTTGCAAT+TGG	+	chr5.1:13606979-13606998	MS.gene67475:intron	30.0%
CTGAAATTGTCAAAAACTGT+CGG	-	chr5.1:13606129-13606148	None:intergenic	30.0%
GAAAGCCAATATGAAAACAT+CGG	-	chr5.1:13606341-13606360	None:intergenic	30.0%
GATTGAAATGGATACAATGT+GGG	+	chr5.1:13605759-13605778	MS.gene67475:intron	30.0%
TCGAGTTTATGTTTGATTGT+TGG	+	chr5.1:13605993-13606012	MS.gene67475:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	13605295	13607552	13605295	ID=MS.gene67475
chr5.1	mRNA	13605295	13607552	13605295	ID=MS.gene67475.t1;Parent=MS.gene67475
chr5.1	exon	13605295	13605393	13605295	ID=MS.gene67475.t1.exon1;Parent=MS.gene67475.t1
chr5.1	CDS	13605295	13605393	13605295	ID=cds.MS.gene67475.t1;Parent=MS.gene67475.t1
chr5.1	exon	13606117	13606204	13606117	ID=MS.gene67475.t1.exon2;Parent=MS.gene67475.t1
chr5.1	CDS	13606117	13606204	13606117	ID=cds.MS.gene67475.t1;Parent=MS.gene67475.t1
chr5.1	exon	13606293	13606402	13606293	ID=MS.gene67475.t1.exon3;Parent=MS.gene67475.t1
chr5.1	CDS	13606293	13606402	13606293	ID=cds.MS.gene67475.t1;Parent=MS.gene67475.t1
chr5.1	exon	13606563	13606626	13606563	ID=MS.gene67475.t1.exon4;Parent=MS.gene67475.t1
chr5.1	CDS	13606563	13606626	13606563	ID=cds.MS.gene67475.t1;Parent=MS.gene67475.t1
chr5.1	exon	13607143	13607207	13607143	ID=MS.gene67475.t1.exon5;Parent=MS.gene67475.t1
chr5.1	CDS	13607143	13607207	13607143	ID=cds.MS.gene67475.t1;Parent=MS.gene67475.t1
chr5.1	exon	13607296	13607361	13607296	ID=MS.gene67475.t1.exon6;Parent=MS.gene67475.t1
chr5.1	CDS	13607296	13607361	13607296	ID=cds.MS.gene67475.t1;Parent=MS.gene67475.t1
chr5.1	exon	13607451	13607552	13607451	ID=MS.gene67475.t1.exon7;Parent=MS.gene67475.t1
chr5.1	CDS	13607451	13607552	13607451	ID=cds.MS.gene67475.t1;Parent=MS.gene67475.t1

Gene Sequence

>MS.gene67475

ATGAGTGCTTCTAGGTTTATTAAATGTGTTACTGTTGGTGATGGAGCTGTTGGCAAAACTTGTTTGTTGATTTCTTACACCAGCAATACTTTCCCCACGGTTTGTCATTCTTCCCCCTTTTTCTTTTTTCTTCAATTTTTCAATTTCAAATTTTTATTTTTGGGTATTTGGGTTGTTTTTAAATTCCTGGCTTTTTCCAATTGAAAATTTTGATTTTTGCTTATTTGGGTTGTGTTAAAATTCCTGTTTTTTAGATTTTGAATTGAAATATTTTATTTTTGGTTGTTTGAGTTGTGTTTAAGTTCCTCTTTTTTTTTTCAACTTTGAATTGAAAATTTTGATTTTTCGGTGTTTGGGTTATATTTAAATTCTTGTAAATTTGAAATCTGGCATGGAAAATGCTTTGTAAGGCAACCGAGTATGTAAATTATGATTTGGAATGATGGGTTGGATGTTAATTTAAAGATTGAAATGGATACAATGTGGGATTTTGGTTTGGAATTTATATGTAATTGGGTTGAGTTTGTTGAATTTAAAATTTGGGTGTTTAGATTATATTTAAAGTCATGTAAATTTCAAATTTGTTATGGAAAGTACTTTGTAAGGCAACTGGGTATGTAAATTGTGATTTGAAATGATAGTAATACATTGAGTGTTTGATTTAAAAGTTGAAATGGATATAATGTGAGATTTTGGTTTCGAGTTTATGTTTGATTGTTGGAATTAAAAGTTGGGTTGAGTTTGTGTTGATGATGATATTGATTTGTGAATTTGCTGGACTATCAATTTATTTTGTTGAACTTGCTTTTTGGTTGGAAACAGGATTATGTGCCGACAGTTTTTGACAATTTCAGTGCGAATGTGGTTGTTAATGGAAGTATTGTGAATCTGGGTTTGTGGGATACTGCTGGTAATGTTTTGTTATTTGATTTATATTTTGGTGGATTTTGTTATTCGGGAGGTTCTTTCTGGATTTATTGTGTTTATTTGTGGAACAGGGCAAGAGGATTATAACAGATTAAGACCTTTGAGTTACCGTGGTGCCGATGTTTTCATATTGGCTTTCTCTCTCATAAGCAAAGCCAGTTATGAAAATGTCTCCAAAAAGGTGCTTTCTTGTTCCCATTTTGCTTTGGTGTCCCTTGTGTTTTTTTATGTATTTTGGTTTATCTGCGGTGAACAATATATACGGGTTGTGTTATATGTTAGTAGAATGTTTAGTTTATGAGAAATTACTGATACATCACACATGCTTGTTTCATTTTCAGTGGATTCCAGAGTTGAAGCATTATGCACCTGGTGTCCCCATAATTCTGGTTGGAACAAAGCTTGGTATGTTAATTGCTGCATAATGTGATATCGATATGTTGATGCCATCTTCCCCATATTTATATATGGTATTAATCAGGGTTTTTTCTATGATGAAATCACATAGCCCCATGCATTTCATAATCAACTATATTGATGATGTAGATATCTTTAGAAGTTTCCATTTGTCGAACTGGCTAACTGCTGAACCGGTTCTTTTTGTTTGCTAGGGGGAAGGGGGGATTTCTGGTGCATTTCATTTTCGTTCTATTTGATTCCTTGTTTTTCATCACCATTGTTTTTCTACTGGTATCTGATACATCAGTTTTGGTCAATGTTTTGATTTTTCTGCCTTTCTGGTTTGTTTTAGTTTTATCCATACATTGTATTTGCAATTGGGGTTTCCCTGTCTCCAGATTTGTATTAAATATTTTCGAATAATCTCCCATAATTCTGGTTGTGCTAGTTTCCTGATCAGTGTACCAGTTTTTTTCGACTTAATATTTAGTTCCTATTATTTTGTCATTTGTATCGAGATAGACCTTCGGGATGATAAGCAGTTCTGCATAGACCATCCTGGTGCCGTTCCCATTACCACAGCTCAGGTGAATTTTTATTCTGCTACTCTAGGATCTAGTAGTTTACTTGTTAAATGTATATTAAATTAAATCTGACATGTGGGTCCTATTAAAGGGTGAAGAGCTGAGGAAGCTGATTAATGCACCAGCTTACATTGAATGCAGTTCAAAATCACAGGAGGTATATGGTTTTCTGATTAATTTGATTCTTCTAATTCACAATGGTTAATTTAATGTGAAGTTAAAGTTTGTTGGATGTATTTATTGCAGAACGTGAAGGCGGTGTTTGACGCAGCCATAAGAGTTGTCCTTCAACCACCAAAGCAGAAGAAAAAGAAGAATAAAGCACAAAAGGCCTGTTCAATATTGTAA

Protein sequence

>MS.gene67475.t1

MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSIVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFCIDHPGAVPITTAQGEELRKLINAPAYIECSSKSQENVKAVFDAAIRVVLQPPKQKKKKNKAQKACSIL