Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96863.t1 | XP_013448876.1 | 97 | 301 | 9 | 0 | 1 | 301 | 1 | 301 | 2.50E-168 | 601.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96863.t1 | Q09893 | 39.5 | 129 | 74 | 3 | 18 | 143 | 8 | 135 | 8.5e-16 | 85.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96863.t1 | I3S857 | 97.0 | 301 | 9 | 0 | 1 | 301 | 1 | 301 | 1.8e-168 | 601.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055276 | MS.gene96863 | 0.962985 | 1.56E-121 | -1.69E-46 |
| MS.gene058726 | MS.gene96863 | -0.814103 | 1.83E-51 | -1.69E-46 |
| MS.gene060482 | MS.gene96863 | 0.804903 | 1.73E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene96863 | MS.gene006477 | PPI |
| MS.gene96863 | MS.gene80067 | PPI |
| MS.gene96863 | MS.gene26907 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96863.t1 | MTR_7g062150 | 97.010 | 301 | 9 | 0 | 1 | 301 | 1 | 301 | 0.0 | 612 |
| MS.gene96863.t1 | MTR_4g021800 | 84.158 | 303 | 39 | 4 | 1 | 301 | 1 | 296 | 0.0 | 503 |
| MS.gene96863.t1 | MTR_7g062150 | 96.522 | 230 | 8 | 0 | 1 | 230 | 1 | 230 | 4.35e-170 | 471 |
| MS.gene96863.t1 | MTR_4g021825 | 73.841 | 302 | 76 | 2 | 1 | 301 | 25 | 324 | 2.19e-163 | 457 |
| MS.gene96863.t1 | MTR_4g021800 | 85.659 | 258 | 29 | 3 | 45 | 301 | 1 | 251 | 3.67e-156 | 436 |
| MS.gene96863.t1 | MTR_4g021800 | 83.621 | 232 | 32 | 3 | 1 | 230 | 1 | 228 | 5.13e-136 | 384 |
| MS.gene96863.t1 | MTR_2g097520 | 55.298 | 302 | 123 | 3 | 1 | 301 | 1 | 291 | 2.72e-113 | 329 |
| MS.gene96863.t1 | MTR_4g064380 | 54.485 | 301 | 117 | 4 | 1 | 301 | 1 | 281 | 2.36e-112 | 326 |
| MS.gene96863.t1 | MTR_1g085570 | 48.197 | 305 | 106 | 3 | 1 | 301 | 1 | 257 | 4.38e-99 | 291 |
| MS.gene96863.t1 | MTR_1g085570 | 50.347 | 288 | 95 | 2 | 14 | 301 | 10 | 249 | 8.19e-99 | 291 |
| MS.gene96863.t1 | MTR_1g085570 | 50.173 | 289 | 95 | 3 | 14 | 301 | 10 | 250 | 3.42e-97 | 286 |
| MS.gene96863.t1 | MTR_1g085570 | 50.209 | 239 | 71 | 2 | 14 | 252 | 10 | 200 | 1.40e-79 | 241 |
| MS.gene96863.t1 | MTR_1g104610 | 44.056 | 286 | 113 | 3 | 15 | 298 | 10 | 250 | 3.64e-78 | 239 |
| MS.gene96863.t1 | MTR_1g104610 | 47.059 | 238 | 84 | 1 | 15 | 252 | 10 | 205 | 7.76e-70 | 217 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96863.t1 | AT5G02230 | 69.205 | 302 | 70 | 2 | 1 | 301 | 1 | 280 | 3.05e-144 | 407 |
| MS.gene96863.t1 | AT5G02230 | 69.205 | 302 | 70 | 2 | 1 | 301 | 1 | 280 | 3.05e-144 | 407 |
| MS.gene96863.t1 | AT5G02230 | 69.205 | 302 | 70 | 2 | 1 | 301 | 38 | 317 | 1.01e-143 | 407 |
| MS.gene96863.t1 | AT5G59480 | 56.187 | 299 | 110 | 2 | 1 | 297 | 1 | 280 | 1.44e-118 | 342 |
| MS.gene96863.t1 | AT5G59480 | 56.187 | 299 | 110 | 2 | 1 | 297 | 1 | 280 | 1.44e-118 | 342 |
| MS.gene96863.t1 | AT5G59480 | 56.187 | 299 | 110 | 2 | 1 | 297 | 1 | 280 | 1.44e-118 | 342 |
| MS.gene96863.t1 | AT5G59480 | 56.187 | 299 | 110 | 2 | 1 | 297 | 1 | 280 | 1.44e-118 | 342 |
| MS.gene96863.t1 | AT5G59480 | 56.187 | 299 | 109 | 3 | 1 | 297 | 1 | 279 | 1.65e-116 | 337 |
| MS.gene96863.t1 | AT5G59490 | 54.153 | 301 | 97 | 4 | 6 | 301 | 2 | 266 | 3.34e-103 | 303 |
| MS.gene96863.t1 | AT3G62040 | 53.165 | 237 | 63 | 3 | 45 | 280 | 1 | 190 | 5.50e-83 | 249 |
| MS.gene96863.t1 | AT2G32150 | 46.617 | 266 | 101 | 3 | 16 | 281 | 7 | 231 | 1.99e-82 | 249 |
| MS.gene96863.t1 | AT5G59490 | 55.061 | 247 | 75 | 3 | 6 | 252 | 2 | 212 | 6.95e-81 | 244 |
| MS.gene96863.t1 | AT2G32150 | 47.257 | 237 | 84 | 3 | 16 | 252 | 7 | 202 | 5.32e-69 | 214 |
| MS.gene96863.t1 | AT2G32150 | 46.083 | 217 | 76 | 3 | 16 | 232 | 7 | 182 | 1.17e-60 | 191 |
Find 64 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCCAGCTTGTATGTTTC+TGG | 0.134165 | 7.3:-43149530 | None:intergenic |
| TTCCAAATATTTGATATTAT+TGG | 0.138096 | 7.3:+43148780 | MS.gene96863:CDS |
| GAACAACTATGGCTGGTTTA+AGG | 0.158157 | 7.3:+43147869 | MS.gene96863:CDS |
| AAATATGATTGTCTTCTATT+TGG | 0.166756 | 7.3:+43147501 | MS.gene96863:CDS |
| GGCCAATAATATCAAATATT+TGG | 0.189719 | 7.3:-43148782 | None:intergenic |
| TCCGAAGGTTTGCAAATAAT+TGG | 0.190370 | 7.3:-43148846 | None:intergenic |
| CCATTGATTTATAGATTATA+TGG | 0.220325 | 7.3:+43147780 | MS.gene96863:intron |
| TCTTGCTAAGCCTCCCTTAT+AGG | 0.226837 | 7.3:+43148306 | MS.gene96863:CDS |
| GAGAGGCAGTGCCAGAATTA+TGG | 0.244343 | 7.3:+43149759 | MS.gene96863:CDS |
| AAACTTACTAGTTTCCTATA+AGG | 0.248483 | 7.3:-43148320 | None:intergenic |
| ATTTCAGATTCCCATAATTC+TGG | 0.252639 | 7.3:-43149770 | None:intergenic |
| TTGCAAATAATTGGTGTCTT+TGG | 0.268860 | 7.3:-43148837 | None:intergenic |
| AGCAAGAGGTTCCTTAGAAT+TGG | 0.290543 | 7.3:-43148290 | None:intergenic |
| GGTAAATCACAGAGAATTAA+AGG | 0.311037 | 7.3:+43149701 | MS.gene96863:CDS |
| GCATGTGGACAAAATATTAA+AGG | 0.327206 | 7.3:+43147661 | MS.gene96863:CDS |
| TGAAGCCAGACCCAATTCTA+AGG | 0.354368 | 7.3:+43148279 | MS.gene96863:CDS |
| GAAGAAGATATTGAGTTTGT+AGG | 0.359501 | 7.3:+43148714 | MS.gene96863:CDS |
| AACAACTATGGCTGGTTTAA+GGG | 0.377629 | 7.3:+43147870 | MS.gene96863:CDS |
| TTGGATTGGATTGTGCAAAA+TGG | 0.380576 | 7.3:-43148803 | None:intergenic |
| AGAGGCAGTGCCAGAATTAT+GGG | 0.383627 | 7.3:+43149760 | MS.gene96863:CDS |
| ATTCTGGCACTGCCTCTCTA+AGG | 0.393934 | 7.3:-43149754 | None:intergenic |
| AACTTACTAGTTTCCTATAA+GGG | 0.397060 | 7.3:-43148319 | None:intergenic |
| TTGTGGTCAATTTAGGCAAT+TGG | 0.398955 | 7.3:+43148057 | MS.gene96863:intron |
| ACCAATTATTTGCAAACCTT+CGG | 0.402223 | 7.3:+43148845 | MS.gene96863:CDS |
| GCAAGAGGTTCCTTAGAATT+GGG | 0.408266 | 7.3:-43148289 | None:intergenic |
| GTCTTTGGCAACACTTCACT+TGG | 0.416899 | 7.3:-43148822 | None:intergenic |
| AAGGTTGTGGATGCTTTCTA+AGG | 0.423337 | 7.3:-43149735 | None:intergenic |
| TTTGCAATACCACAGCTTAG+TGG | 0.425245 | 7.3:-43147637 | None:intergenic |
| TGGCAACACTTCACTTGGAT+TGG | 0.430282 | 7.3:-43148817 | None:intergenic |
| AGTTCTTTGTGGGTCAAGAT+TGG | 0.432122 | 7.3:-43148898 | None:intergenic |
| TCTGGCTTCAAATTCTCATA+TGG | 0.444951 | 7.3:-43148266 | None:intergenic |
| ATGCAGTTAAGGCACTAAAC+AGG | 0.445452 | 7.3:+43148610 | MS.gene96863:CDS |
| AGGTTCCTTAGAATTGGGTC+TGG | 0.448378 | 7.3:-43148284 | None:intergenic |
| AACTATGGAACAACTATGGC+TGG | 0.456420 | 7.3:+43147862 | MS.gene96863:CDS |
| AGACAAAGTTCATGCAGTTA+AGG | 0.463592 | 7.3:+43148599 | MS.gene96863:CDS |
| ACTAGTACTTGTGGTATGAT+TGG | 0.466261 | 7.3:-43148748 | None:intergenic |
| TCTGAAATTAAATCAGAAGT+TGG | 0.466334 | 7.3:+43149785 | MS.gene96863:CDS |
| AGAAACACTGTTCTTGTGGA+TGG | 0.473227 | 7.3:-43148685 | None:intergenic |
| GATTATATGGTTGAGAAGCT+TGG | 0.473494 | 7.3:+43147793 | MS.gene96863:intron |
| GCACTGCCTCTCTAAGGTTG+TGG | 0.491454 | 7.3:-43149748 | None:intergenic |
| GGAGACATCTGTGACTGCTT+AGG | 0.506170 | 7.3:+43149829 | MS.gene96863:CDS |
| TGCATGAACTTTGTCTGCAT+TGG | 0.507933 | 7.3:-43148592 | None:intergenic |
| CATCAGAAACACTGTTCTTG+TGG | 0.523606 | 7.3:-43148689 | None:intergenic |
| GAAACACTGTTCTTGTGGAT+GGG | 0.532461 | 7.3:-43148684 | None:intergenic |
| GTTAAGGCACTAAACAGGCT+TGG | 0.537369 | 7.3:+43148615 | MS.gene96863:CDS |
| TTCGGAATATGCCATTGAGT+TGG | 0.549934 | 7.3:+43148863 | MS.gene96863:CDS |
| AGTGCCAGAAACATACAAGC+TGG | 0.558578 | 7.3:+43149526 | MS.gene96863:CDS |
| TATCTTGAGAGCCAACTCAA+TGG | 0.573981 | 7.3:-43148874 | None:intergenic |
| TTATTCTAACAAGCTTGCTG+TGG | 0.580000 | 7.3:+43149808 | MS.gene96863:CDS |
| AACTCAATGGCATATTCCGA+AGG | 0.590798 | 7.3:-43148861 | None:intergenic |
| TGTGGGACTTGACACTGTGC+TGG | 0.591732 | 7.3:+43149555 | MS.gene96863:CDS |
| TTGACTATGATGAATATCAC+AGG | 0.610280 | 7.3:+43148088 | MS.gene96863:CDS |
| TTACTAGTTTCCTATAAGGG+AGG | 0.612508 | 7.3:-43148316 | None:intergenic |
| GTGCCAGAAACATACAAGCT+GGG | 0.615550 | 7.3:+43149527 | MS.gene96863:CDS |
| TATAAGGGAGGCTTAGCAAG+AGG | 0.623743 | 7.3:-43148304 | None:intergenic |
| GTTACTACCACTAGTACTTG+TGG | 0.630315 | 7.3:-43148757 | None:intergenic |
| CATACAAGCTGGGAAACGTG+TGG | 0.635233 | 7.3:+43149537 | MS.gene96863:CDS |
| CTGCTTGAAATGGAGTACGA+GGG | 0.637705 | 7.3:+43147453 | None:intergenic |
| ATACAAGCTGGGAAACGTGT+GGG | 0.639764 | 7.3:+43149538 | MS.gene96863:CDS |
| AATCATACCACAAGTACTAG+TGG | 0.639846 | 7.3:+43148750 | MS.gene96863:CDS |
| TCTGCTTGAAATGGAGTACG+AGG | 0.655487 | 7.3:+43147452 | None:intergenic |
| ACTTTGTATCCACTAAGCTG+TGG | 0.665300 | 7.3:+43147628 | MS.gene96863:CDS |
| AAGCATCCACAACCTTAGAG+AGG | 0.675174 | 7.3:+43149742 | MS.gene96863:CDS |
| TGTGGTATTGCAAAAGCATG+TGG | 0.705500 | 7.3:+43147646 | MS.gene96863:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAATATTTATACACTTT+AGG | - | chr7.3:43148377-43148396 | None:intergenic | 10.0% |
| !! | ATAACATAATGTCAATAATT+TGG | - | chr7.3:43149622-43149641 | None:intergenic | 15.0% |
| !! | ATGACAAAAAAAAACAAATT+AGG | - | chr7.3:43149477-43149496 | None:intergenic | 15.0% |
| !! | TTCCAAATATTTGATATTAT+TGG | + | chr7.3:43148780-43148799 | MS.gene96863:CDS | 15.0% |
| !!! | TTACTTGCTATAATAAAAAT+CGG | + | chr7.3:43149083-43149102 | MS.gene96863:intron | 15.0% |
| !! | AAATATGATTGTCTTCTATT+TGG | + | chr7.3:43147501-43147520 | MS.gene96863:CDS | 20.0% |
| !! | CCATATAATCTATAAATCAA+TGG | - | chr7.3:43147783-43147802 | None:intergenic | 20.0% |
| !! | TATATAACAAATGTTAGCAA+TGG | - | chr7.3:43149585-43149604 | None:intergenic | 20.0% |
| !! | TGTAACAATCAAATAATTAG+AGG | - | chr7.3:43149663-43149682 | None:intergenic | 20.0% |
| !!! | ACAACTTATGTTTTTTTTTG+TGG | + | chr7.3:43148040-43148059 | MS.gene96863:intron | 20.0% |
| !!! | ATTTTAATGATGAGTGTATT+AGG | - | chr7.3:43148937-43148956 | None:intergenic | 20.0% |
| !!! | CCATTGATTTATAGATTATA+TGG | + | chr7.3:43147780-43147799 | MS.gene96863:intron | 20.0% |
| !!! | TTTTAGTAATCTGTAACAAA+CGG | - | chr7.3:43148992-43149011 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGTGGTCAATTT+AGG | + | chr7.3:43148050-43148069 | MS.gene96863:intron | 20.0% |
| ! | AACCATCTTTACAAAAACTA+TGG | + | chr7.3:43147847-43147866 | MS.gene96863:CDS | 25.0% |
| ! | ACGTGTGATTACAAATATTA+AGG | - | chr7.3:43149345-43149364 | None:intergenic | 25.0% |
| ! | ATAGGAAAAACACAATAAAG+AGG | - | chr7.3:43148563-43148582 | None:intergenic | 25.0% |
| ! | CACATTACTAAGAACATTAT+TGG | - | chr7.3:43147701-43147720 | None:intergenic | 25.0% |
| ! | CGTGTGATTACAAATATTAA+GGG | - | chr7.3:43149344-43149363 | None:intergenic | 25.0% |
| ! | GGCCAATAATATCAAATATT+TGG | - | chr7.3:43148785-43148804 | None:intergenic | 25.0% |
| ! | GTAAACAGATTCTAAGTTAT+TGG | - | chr7.3:43149028-43149047 | None:intergenic | 25.0% |
| ! | TAGAAGTGATGTAGTATAAA+AGG | - | chr7.3:43148135-43148154 | None:intergenic | 25.0% |
| ! | TGTTACACATCATTGTATAT+AGG | + | chr7.3:43149676-43149695 | MS.gene96863:intron | 25.0% |
| !! | AAACTTACTAGTTTCCTATA+AGG | - | chr7.3:43148323-43148342 | None:intergenic | 25.0% |
| !! | AACTTACTAGTTTCCTATAA+GGG | - | chr7.3:43148322-43148341 | None:intergenic | 25.0% |
| !! | ATAGTTTTTGTAAAGATGGT+TGG | - | chr7.3:43147848-43147867 | None:intergenic | 25.0% |
| !! | TCATTTTCAGTTATTCTTTG+AGG | + | chr7.3:43149501-43149520 | MS.gene96863:intron | 25.0% |
| !! | TCTGAAATTAAATCAGAAGT+TGG | + | chr7.3:43149785-43149804 | MS.gene96863:CDS | 25.0% |
| !! | TTCCATAGTTTTTGTAAAGA+TGG | - | chr7.3:43147852-43147871 | None:intergenic | 25.0% |
| !! | TTTGATGCATGTAATTTTGT+TGG | + | chr7.3:43147731-43147750 | MS.gene96863:intron | 25.0% |
| !!! | TGTTAATACAGTTTTGTTCA+TGG | + | chr7.3:43148236-43148255 | MS.gene96863:intron | 25.0% |
| ACACATCATTGTATATAGGT+TGG | + | chr7.3:43149680-43149699 | MS.gene96863:intron | 30.0% | |
| ACCAATTATTTGCAAACCTT+CGG | + | chr7.3:43148845-43148864 | MS.gene96863:CDS | 30.0% | |
| AGAAATTAAGCTGAAATCAC+AGG | + | chr7.3:43148011-43148030 | MS.gene96863:intron | 30.0% | |
| AGGTATTAAATTTGAGAGTG+TGG | - | chr7.3:43148357-43148376 | None:intergenic | 30.0% | |
| ATTAGAGGCTCATATTTGTT+TGG | - | chr7.3:43149648-43149667 | None:intergenic | 30.0% | |
| ATTTAAGCTGAAATTGTCGA+TGG | + | chr7.3:43147926-43147945 | MS.gene96863:intron | 30.0% | |
| ATTTCAGATTCCCATAATTC+TGG | - | chr7.3:43149773-43149792 | None:intergenic | 30.0% | |
| CAAAAACTATGGAACAACTA+TGG | + | chr7.3:43147858-43147877 | MS.gene96863:CDS | 30.0% | |
| GAAGAAGATATTGAGTTTGT+AGG | + | chr7.3:43148714-43148733 | MS.gene96863:CDS | 30.0% | |
| GCATGTGGACAAAATATTAA+AGG | + | chr7.3:43147661-43147680 | MS.gene96863:CDS | 30.0% | |
| GGTAAATCACAGAGAATTAA+AGG | + | chr7.3:43149701-43149720 | MS.gene96863:CDS | 30.0% | |
| TGGTACATACAAAACAACAT+TGG | - | chr7.3:43147763-43147782 | None:intergenic | 30.0% | |
| TTGACTATGATGAATATCAC+AGG | + | chr7.3:43148088-43148107 | MS.gene96863:CDS | 30.0% | |
| TTTAAGCTGAAATTGTCGAT+GGG | + | chr7.3:43147927-43147946 | MS.gene96863:intron | 30.0% | |
| TTTGTAATCACACGTAATTG+TGG | + | chr7.3:43149350-43149369 | MS.gene96863:intron | 30.0% | |
| ! | GTTTTCTTACAGTTCTTTGT+GGG | - | chr7.3:43148911-43148930 | None:intergenic | 30.0% |
| ! | TGTTTTCTTACAGTTCTTTG+TGG | - | chr7.3:43148912-43148931 | None:intergenic | 30.0% |
| ! | TTGCAAATAATTGGTGTCTT+TGG | - | chr7.3:43148840-43148859 | None:intergenic | 30.0% |
| !!! | CTGCGAACTTTGAAATTTTT+AGG | - | chr7.3:43149419-43149438 | None:intergenic | 30.0% |
| AATCATACCACAAGTACTAG+TGG | + | chr7.3:43148750-43148769 | MS.gene96863:CDS | 35.0% | |
| ACTAGTACTTGTGGTATGAT+TGG | - | chr7.3:43148751-43148770 | None:intergenic | 35.0% | |
| AGACAAAGTTCATGCAGTTA+AGG | + | chr7.3:43148599-43148618 | MS.gene96863:CDS | 35.0% | |
| CCGTGGCTACAAAATTATAA+CGG | - | chr7.3:43149304-43149323 | None:intergenic | 35.0% | |
| GATTATATGGTTGAGAAGCT+TGG | + | chr7.3:43147793-43147812 | MS.gene96863:intron | 35.0% | |
| TCCGAAGGTTTGCAAATAAT+TGG | - | chr7.3:43148849-43148868 | None:intergenic | 35.0% | |
| TTGTGGTCAATTTAGGCAAT+TGG | + | chr7.3:43148057-43148076 | MS.gene96863:intron | 35.0% | |
| ! | CCGTTATAATTTTGTAGCCA+CGG | + | chr7.3:43149301-43149320 | MS.gene96863:intron | 35.0% |
| ! | TAATTTTGTAGCCACGGTTT+AGG | + | chr7.3:43149307-43149326 | MS.gene96863:intron | 35.0% |
| ! | TCTGGCTTCAAATTCTCATA+TGG | - | chr7.3:43148269-43148288 | None:intergenic | 35.0% |
| ! | TTACTAGTTTCCTATAAGGG+AGG | - | chr7.3:43148319-43148338 | None:intergenic | 35.0% |
| ! | TTGGATTGGATTGTGCAAAA+TGG | - | chr7.3:43148806-43148825 | None:intergenic | 35.0% |
| !! | AACAACTATGGCTGGTTTAA+GGG | + | chr7.3:43147870-43147889 | MS.gene96863:CDS | 35.0% |
| !! | TTATTCTAACAAGCTTGCTG+TGG | + | chr7.3:43149808-43149827 | MS.gene96863:CDS | 35.0% |
| !!! | GGACTAGAAGATTGTTTTGA+AGG | + | chr7.3:43148636-43148655 | MS.gene96863:CDS | 35.0% |
| AACTATGGAACAACTATGGC+TGG | + | chr7.3:43147862-43147881 | MS.gene96863:CDS | 40.0% | |
| AACTCAATGGCATATTCCGA+AGG | - | chr7.3:43148864-43148883 | None:intergenic | 40.0% | |
| AAGGTTGTGGATGCTTTCTA+AGG | - | chr7.3:43149738-43149757 | None:intergenic | 40.0% | |
| ACTTTGTATCCACTAAGCTG+TGG | + | chr7.3:43147628-43147647 | MS.gene96863:CDS | 40.0% | |
| AGAAACACTGTTCTTGTGGA+TGG | - | chr7.3:43148688-43148707 | None:intergenic | 40.0% | |
| AGCAAGAGGTTCCTTAGAAT+TGG | - | chr7.3:43148293-43148312 | None:intergenic | 40.0% | |
| AGTTCTTTGTGGGTCAAGAT+TGG | - | chr7.3:43148901-43148920 | None:intergenic | 40.0% | |
| ATCAGTCCTCTCGAATTAGT+CGG | + | chr7.3:43147950-43147969 | MS.gene96863:intron | 40.0% | |
| CATCAGAAACACTGTTCTTG+TGG | - | chr7.3:43148692-43148711 | None:intergenic | 40.0% | |
| GAAACACTGTTCTTGTGGAT+GGG | - | chr7.3:43148687-43148706 | None:intergenic | 40.0% | |
| GCAAGAGGTTCCTTAGAATT+GGG | - | chr7.3:43148292-43148311 | None:intergenic | 40.0% | |
| GTTACTACCACTAGTACTTG+TGG | - | chr7.3:43148760-43148779 | None:intergenic | 40.0% | |
| TATCTTGAGAGCCAACTCAA+TGG | - | chr7.3:43148877-43148896 | None:intergenic | 40.0% | |
| TGCATGAACTTTGTCTGCAT+TGG | - | chr7.3:43148595-43148614 | None:intergenic | 40.0% | |
| TTCGGAATATGCCATTGAGT+TGG | + | chr7.3:43148863-43148882 | MS.gene96863:CDS | 40.0% | |
| TTTCCCAGCTTGTATGTTTC+TGG | - | chr7.3:43149533-43149552 | None:intergenic | 40.0% | |
| TTTGCAATACCACAGCTTAG+TGG | - | chr7.3:43147640-43147659 | None:intergenic | 40.0% | |
| ! | ATGCAGTTAAGGCACTAAAC+AGG | + | chr7.3:43148610-43148629 | MS.gene96863:CDS | 40.0% |
| ! | CTGCATTGGTGAAGATCTAT+AGG | - | chr7.3:43148581-43148600 | None:intergenic | 40.0% |
| ! | TGTGGTATTGCAAAAGCATG+TGG | + | chr7.3:43147646-43147665 | MS.gene96863:CDS | 40.0% |
| !! | GAACAACTATGGCTGGTTTA+AGG | + | chr7.3:43147869-43147888 | MS.gene96863:CDS | 40.0% |
| AAGCATCCACAACCTTAGAG+AGG | + | chr7.3:43149742-43149761 | MS.gene96863:CDS | 45.0% | |
| AGAGGCAGTGCCAGAATTAT+GGG | + | chr7.3:43149760-43149779 | MS.gene96863:CDS | 45.0% | |
| AGGTTCCTTAGAATTGGGTC+TGG | - | chr7.3:43148287-43148306 | None:intergenic | 45.0% | |
| AGTGCCAGAAACATACAAGC+TGG | + | chr7.3:43149526-43149545 | MS.gene96863:CDS | 45.0% | |
| ATACAAGCTGGGAAACGTGT+GGG | + | chr7.3:43149538-43149557 | MS.gene96863:CDS | 45.0% | |
| CTAAGACCGACTAATTCGAG+AGG | - | chr7.3:43147959-43147978 | None:intergenic | 45.0% | |
| GTCTTTGGCAACACTTCACT+TGG | - | chr7.3:43148825-43148844 | None:intergenic | 45.0% | |
| GTGCCAGAAACATACAAGCT+GGG | + | chr7.3:43149527-43149546 | MS.gene96863:CDS | 45.0% | |
| TATAAGGGAGGCTTAGCAAG+AGG | - | chr7.3:43148307-43148326 | None:intergenic | 45.0% | |
| TCTTGCTAAGCCTCCCTTAT+AGG | + | chr7.3:43148306-43148325 | MS.gene96863:CDS | 45.0% | |
| TGAAGCCAGACCCAATTCTA+AGG | + | chr7.3:43148279-43148298 | MS.gene96863:CDS | 45.0% | |
| TGGCAACACTTCACTTGGAT+TGG | - | chr7.3:43148820-43148839 | None:intergenic | 45.0% | |
| ! | GTTAAGGCACTAAACAGGCT+TGG | + | chr7.3:43148615-43148634 | MS.gene96863:CDS | 45.0% |
| ATTCTGGCACTGCCTCTCTA+AGG | - | chr7.3:43149757-43149776 | None:intergenic | 50.0% | |
| CAAAGTTCGCAGTCAGATCG+TGG | + | chr7.3:43149427-43149446 | MS.gene96863:intron | 50.0% | |
| CATACAAGCTGGGAAACGTG+TGG | + | chr7.3:43149537-43149556 | MS.gene96863:CDS | 50.0% | |
| GAGAGGCAGTGCCAGAATTA+TGG | + | chr7.3:43149759-43149778 | MS.gene96863:CDS | 50.0% | |
| TGTGGGACTTGACACTGTGC+TGG | + | chr7.3:43149555-43149574 | MS.gene96863:CDS | 55.0% | |
| TTGCGATGCTGCCTAAACCG+TGG | - | chr7.3:43149321-43149340 | None:intergenic | 55.0% | |
| !! | GCACTGCCTCTCTAAGGTTG+TGG | - | chr7.3:43149751-43149770 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 43147462 | 43149850 | 43147462 | ID=MS.gene96863 |
| chr7.3 | mRNA | 43147462 | 43149850 | 43147462 | ID=MS.gene96863.t1;Parent=MS.gene96863 |
| chr7.3 | exon | 43147462 | 43147522 | 43147462 | ID=MS.gene96863.t1.exon1;Parent=MS.gene96863.t1 |
| chr7.3 | CDS | 43147462 | 43147522 | 43147462 | ID=cds.MS.gene96863.t1;Parent=MS.gene96863.t1 |
| chr7.3 | exon | 43147617 | 43147682 | 43147617 | ID=MS.gene96863.t1.exon2;Parent=MS.gene96863.t1 |
| chr7.3 | CDS | 43147617 | 43147682 | 43147617 | ID=cds.MS.gene96863.t1;Parent=MS.gene96863.t1 |
| chr7.3 | exon | 43147794 | 43147891 | 43147794 | ID=MS.gene96863.t1.exon3;Parent=MS.gene96863.t1 |
| chr7.3 | CDS | 43147794 | 43147891 | 43147794 | ID=cds.MS.gene96863.t1;Parent=MS.gene96863.t1 |
| chr7.3 | exon | 43148072 | 43148109 | 43148072 | ID=MS.gene96863.t1.exon4;Parent=MS.gene96863.t1 |
| chr7.3 | CDS | 43148072 | 43148109 | 43148072 | ID=cds.MS.gene96863.t1;Parent=MS.gene96863.t1 |
| chr7.3 | exon | 43148247 | 43148334 | 43148247 | ID=MS.gene96863.t1.exon5;Parent=MS.gene96863.t1 |
| chr7.3 | CDS | 43148247 | 43148334 | 43148247 | ID=cds.MS.gene96863.t1;Parent=MS.gene96863.t1 |
| chr7.3 | exon | 43148585 | 43148920 | 43148585 | ID=MS.gene96863.t1.exon6;Parent=MS.gene96863.t1 |
| chr7.3 | CDS | 43148585 | 43148920 | 43148585 | ID=cds.MS.gene96863.t1;Parent=MS.gene96863.t1 |
| chr7.3 | exon | 43149511 | 43149576 | 43149511 | ID=MS.gene96863.t1.exon7;Parent=MS.gene96863.t1 |
| chr7.3 | CDS | 43149511 | 43149576 | 43149511 | ID=cds.MS.gene96863.t1;Parent=MS.gene96863.t1 |
| chr7.3 | exon | 43149698 | 43149850 | 43149698 | ID=MS.gene96863.t1.exon8;Parent=MS.gene96863.t1 |
| chr7.3 | CDS | 43149698 | 43149850 | 43149698 | ID=cds.MS.gene96863.t1;Parent=MS.gene96863.t1 |
| Gene Sequence |
| Protein sequence |
