Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97148.t1 | XP_013460120.1 | 89.2 | 74 | 8 | 0 | 122 | 195 | 1172 | 1245 | 9.50E-28 | 133.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97148.t1 | F4JAA5 | 70.3 | 74 | 22 | 0 | 122 | 195 | 1185 | 1258 | 1.0e-22 | 108.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97148.t1 | A0A072UXI0 | 89.2 | 74 | 8 | 0 | 122 | 195 | 1172 | 1245 | 6.9e-28 | 133.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049254 | MS.gene97148 | 0.830896 | 2.27E-55 | -1.69E-46 |
MS.gene050156 | MS.gene97148 | 0.806864 | 6.69E-50 | -1.69E-46 |
MS.gene052519 | MS.gene97148 | 0.828934 | 6.82E-55 | -1.69E-46 |
MS.gene052773 | MS.gene97148 | 0.808798 | 2.59E-50 | -1.69E-46 |
MS.gene054651 | MS.gene97148 | 0.811166 | 8.02E-51 | -1.69E-46 |
MS.gene055818 | MS.gene97148 | 0.812507 | 4.09E-51 | -1.69E-46 |
MS.gene057026 | MS.gene97148 | 0.810954 | 8.92E-51 | -1.69E-46 |
MS.gene058625 | MS.gene97148 | 0.827787 | 1.29E-54 | -1.69E-46 |
MS.gene058979 | MS.gene97148 | 0.809291 | 2.04E-50 | -1.69E-46 |
MS.gene060572 | MS.gene97148 | 0.810114 | 1.35E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97148.t1 | MTR_3g462290 | 83.750 | 80 | 13 | 0 | 116 | 195 | 1166 | 1245 | 1.28e-37 | 138 |
MS.gene97148.t1 | MTR_2g098850 | 80.488 | 41 | 8 | 0 | 60 | 100 | 261 | 301 | 6.93e-14 | 69.7 |
MS.gene97148.t1 | MTR_2g098850 | 80.488 | 41 | 8 | 0 | 60 | 100 | 261 | 301 | 7.36e-14 | 69.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97148.t1 | AT3G46960 | 66.250 | 80 | 27 | 0 | 116 | 195 | 1051 | 1130 | 1.53e-28 | 112 |
MS.gene97148.t1 | AT3G46960 | 66.250 | 80 | 27 | 0 | 116 | 195 | 1042 | 1121 | 1.69e-28 | 112 |
MS.gene97148.t1 | AT3G46960 | 66.250 | 80 | 27 | 0 | 116 | 195 | 1179 | 1258 | 2.11e-28 | 111 |
Find 42 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGTTGCTGCCTTTGCCAATT+TGG | 0.160763 | 3.2:+5560063 | None:intergenic |
CTTCACTCTTCAGGGCTTAT+TGG | 0.227219 | 3.2:+5556575 | None:intergenic |
GGGCATACTCTTCACTCTTC+AGG | 0.230925 | 3.2:+5556566 | None:intergenic |
CTTGTATAATATAGCCAAAT+TGG | 0.273376 | 3.2:-5560077 | MS.gene97148:CDS |
TATTTCTTAGTTAGTACATT+TGG | 0.288529 | 3.2:-5558622 | MS.gene97148:intron |
ATTAACACTGGTGCTTCTTT+TGG | 0.312881 | 3.2:+5556900 | None:intergenic |
TTCACTCTTCAGGGCTTATT+GGG | 0.325955 | 3.2:+5556576 | None:intergenic |
CGGCTAAGAATCCTGATTAT+TGG | 0.344218 | 3.2:-5560111 | MS.gene97148:CDS |
CAAACCTTTGACCAATAATC+AGG | 0.346860 | 3.2:+5560100 | None:intergenic |
GGCATACTCTTCACTCTTCA+GGG | 0.347658 | 3.2:+5556567 | None:intergenic |
TGTGCGGCGTGTCTTGTATA+AGG | 0.361937 | 3.2:-5560038 | MS.gene97148:intron |
ATTTCTTAGTTAGTACATTT+GGG | 0.370811 | 3.2:-5558621 | MS.gene97148:intron |
CCAACTATAAAATGAGTATA+TGG | 0.377022 | 3.2:-5561339 | MS.gene97148:CDS |
TTACAGACTCTTGCTTATAG+TGG | 0.383704 | 3.2:+5561219 | None:intergenic |
TCAAACTTGGACTCCTGCGC+TGG | 0.389506 | 3.2:+5561260 | None:intergenic |
GTGAGATTGCACTTCAAACT+TGG | 0.398526 | 3.2:+5561247 | None:intergenic |
GCAAAATGCTCCTCGCTAGA+AGG | 0.410498 | 3.2:+5561373 | None:intergenic |
TGAGAACCAGCTCGATGAAC+TGG | 0.411981 | 3.2:-5556925 | MS.gene97148:CDS |
TTGGTTCCAGTTCATCGAGC+TGG | 0.436157 | 3.2:+5556919 | None:intergenic |
GCTCGGATGCATTCTTCTGC+TGG | 0.462768 | 3.2:+5556862 | None:intergenic |
GAATCTGTGGTAGTGTGATC+TGG | 0.472804 | 3.2:+5561302 | None:intergenic |
CAAACTTGGACTCCTGCGCT+GGG | 0.497823 | 3.2:+5561261 | None:intergenic |
GAATCCTGATTATTGGTCAA+AGG | 0.516135 | 3.2:-5560104 | MS.gene97148:CDS |
TGGACAACCACGACACTTGA+CGG | 0.534623 | 3.2:+5558593 | None:intergenic |
TCATCACTTTCACAGGGATA+CGG | 0.536957 | 3.2:-5560131 | MS.gene97148:intron |
GGATTCGCCGTCAAGTGTCG+TGG | 0.582573 | 3.2:-5558600 | MS.gene97148:CDS |
CTGTCTTACAGCACATCTCA+AGG | 0.588076 | 3.2:-5558559 | MS.gene97148:intron |
TCATCTACGATCCCCAGCGC+AGG | 0.599763 | 3.2:-5561273 | MS.gene97148:CDS |
TAATATAGCCAAATTGGCAA+AGG | 0.601822 | 3.2:-5560071 | MS.gene97148:CDS |
TGGGGATCGTAGATGAGTGT+GGG | 0.608534 | 3.2:+5561280 | None:intergenic |
CCTAGGTGTGAGTGATGGCT+CGG | 0.612561 | 3.2:+5556845 | None:intergenic |
GACAGCCTAGGTGTGAGTGA+TGG | 0.618203 | 3.2:+5556840 | None:intergenic |
CCGAGCCATCACTCACACCT+AGG | 0.627548 | 3.2:-5556845 | MS.gene97148:CDS |
CTTCACAAAGCCTTCTAGCG+AGG | 0.630194 | 3.2:-5561383 | MS.gene97148:CDS |
CTCGCTAGAAGGCTTTGTGA+AGG | 0.630596 | 3.2:+5561384 | None:intergenic |
CTGGGGATCGTAGATGAGTG+TGG | 0.633587 | 3.2:+5561279 | None:intergenic |
CACAAAATAGCTATACGACT+AGG | 0.641406 | 3.2:-5556623 | MS.gene97148:CDS |
CAAAGGCAGCAACGACTGTG+CGG | 0.655883 | 3.2:-5560054 | MS.gene97148:CDS |
GTAAGACAGTTGAAGAAGTG+TGG | 0.662636 | 3.2:+5558573 | None:intergenic |
AAACTTGGACTCCTGCGCTG+GGG | 0.663223 | 3.2:+5561262 | None:intergenic |
TAGATGAGTGTGGGAATCTG+TGG | 0.665130 | 3.2:+5561289 | None:intergenic |
ACAAAAGCAGACATTAACAC+TGG | 0.667448 | 3.2:+5556888 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGTTAAAAGAAAATGAAAA+TGG | + | chr3.2:5560737-5560756 | None:intergenic | 15.0% |
!! | ACGTTATAAAAAAAATTAAG+AGG | + | chr3.2:5561235-5561254 | None:intergenic | 15.0% |
!! | ATTAGTTGGATTATATATAA+AGG | - | chr3.2:5557535-5557554 | MS.gene97148:intron | 15.0% |
!! | CGTTATAAAAAAAATTAAGA+GGG | + | chr3.2:5561234-5561253 | None:intergenic | 15.0% |
!! | GAAAATATATGAATATTTCA+TGG | - | chr3.2:5556784-5556803 | MS.gene97148:intron | 15.0% |
!! | GTTATAAAAAAAATTAAGAG+GGG | + | chr3.2:5561233-5561252 | None:intergenic | 15.0% |
!! | TAAAAAAAAAAAAACTAGCT+AGG | + | chr3.2:5559980-5559999 | None:intergenic | 15.0% |
!! | TCAAACATGATTAAAAAATT+TGG | + | chr3.2:5557974-5557993 | None:intergenic | 15.0% |
!!! | AATACTTGTATTTGAATTTT+CGG | - | chr3.2:5559490-5559509 | MS.gene97148:intron | 15.0% |
!!! | ACTATTTTTCAACTAAAAAT+TGG | + | chr3.2:5559044-5559063 | None:intergenic | 15.0% |
!!! | ATATAATTTTTGTTTGGAAT+TGG | - | chr3.2:5560185-5560204 | MS.gene97148:intron | 15.0% |
!!! | ATATTTTAATCAATATTGCA+TGG | - | chr3.2:5557599-5557618 | MS.gene97148:intron | 15.0% |
!!! | GATTAAACTATTTTAAGTAA+AGG | - | chr3.2:5560424-5560443 | MS.gene97148:intron | 15.0% |
!!! | TATAATTTTTGTTTGGAATT+GGG | - | chr3.2:5560186-5560205 | MS.gene97148:intron | 15.0% |
!!! | TGATTAGGTTTTTTTTTTTT+TGG | - | chr3.2:5559844-5559863 | MS.gene97148:intron | 15.0% |
!! | AAGTAAACAATTCAATAAGA+AGG | + | chr3.2:5560538-5560557 | None:intergenic | 20.0% |
!! | AATTAATTAACACTATTAGG+AGG | - | chr3.2:5557680-5557699 | MS.gene97148:intron | 20.0% |
!! | AGATCAAGATATAAGATTTA+AGG | + | chr3.2:5558156-5558175 | None:intergenic | 20.0% |
!! | AGCTTAAACTTTGTAAAAAT+AGG | - | chr3.2:5559137-5559156 | MS.gene97148:intron | 20.0% |
!! | ATGAACAATAAGATTAACTT+TGG | + | chr3.2:5559519-5559538 | None:intergenic | 20.0% |
!! | ATTAATTAACACTATTAGGA+GGG | - | chr3.2:5557681-5557700 | MS.gene97148:intron | 20.0% |
!! | ATTTCTTAGTTAGTACATTT+GGG | - | chr3.2:5559347-5559366 | MS.gene97148:intron | 20.0% |
!! | CAAAAAAATGTTAATCATAC+AGG | + | chr3.2:5559871-5559890 | None:intergenic | 20.0% |
!! | GAATTCCTCATATATATATT+TGG | - | chr3.2:5558084-5558103 | MS.gene97148:intron | 20.0% |
!! | GTCAATTAATTAACACTATT+AGG | - | chr3.2:5557677-5557696 | MS.gene97148:intron | 20.0% |
!! | TAATGGTGTAGTAATATATT+TGG | - | chr3.2:5558037-5558056 | MS.gene97148:intron | 20.0% |
!! | TAGTGTTAATTAATTGACAT+TGG | + | chr3.2:5557675-5557694 | None:intergenic | 20.0% |
!! | TATTTCTTAGTTAGTACATT+TGG | - | chr3.2:5559346-5559365 | MS.gene97148:intron | 20.0% |
!! | TTATATCTTCATGTCTTAAA+TGG | + | chr3.2:5558406-5558425 | None:intergenic | 20.0% |
!! | TTGGATTATATATAAAGGAT+AGG | - | chr3.2:5557540-5557559 | MS.gene97148:intron | 20.0% |
!!! | ATATTTGTTTCTTCTGAAAA+AGG | - | chr3.2:5560012-5560031 | MS.gene97148:intron | 20.0% |
!!! | CTATATTCATTTTATGTGTT+TGG | - | chr3.2:5560985-5561004 | MS.gene97148:intron | 20.0% |
!!! | CTGAACATATAATTTTTGTT+TGG | - | chr3.2:5560179-5560198 | MS.gene97148:intron | 20.0% |
!!! | GAATTTTCTTAATATTACCA+AGG | + | chr3.2:5558819-5558838 | None:intergenic | 20.0% |
!!! | TCTTATAATTGGTTTTCTTA+TGG | - | chr3.2:5558358-5558377 | MS.gene97148:intron | 20.0% |
!!! | TTTTTTGTCAAATGTCAATT+AGG | - | chr3.2:5558948-5558967 | MS.gene97148:intron | 20.0% |
! | AACTAATTGCAATTAATTCC+TGG | + | chr3.2:5557522-5557541 | None:intergenic | 25.0% |
! | AATTTATATTGTTTCACAGG+AGG | + | chr3.2:5558578-5558597 | None:intergenic | 25.0% |
! | AGATTCAAACCATATTCTTA+AGG | + | chr3.2:5558654-5558673 | None:intergenic | 25.0% |
! | AGGAATTAATTGCAATTAGT+TGG | - | chr3.2:5557521-5557540 | MS.gene97148:intron | 25.0% |
! | ATAAAAACTAAGTTACAGCA+TGG | - | chr3.2:5557440-5557459 | MS.gene97148:intron | 25.0% |
! | ATATCTTGATCTAAACTTAC+AGG | - | chr3.2:5558164-5558183 | MS.gene97148:intron | 25.0% |
! | ATGAATTGCAAGTTAAATAC+AGG | + | chr3.2:5557106-5557125 | None:intergenic | 25.0% |
! | ATTAAAACTAAGAGTAACAC+AGG | + | chr3.2:5559451-5559470 | None:intergenic | 25.0% |
! | ATTTATATTGTTTCACAGGA+GGG | + | chr3.2:5558577-5558596 | None:intergenic | 25.0% |
! | CAATCCTAACATATTTGTAT+AGG | - | chr3.2:5560779-5560798 | MS.gene97148:intron | 25.0% |
! | CCAACTATAAAATGAGTATA+TGG | - | chr3.2:5556629-5556648 | MS.gene97148:CDS | 25.0% |
! | CTCAATTTATATTGTTTCAC+AGG | + | chr3.2:5558581-5558600 | None:intergenic | 25.0% |
! | CTTGTATAATATAGCCAAAT+TGG | - | chr3.2:5557891-5557910 | MS.gene97148:intron | 25.0% |
! | GATTAATTGAATTAAGAGCT+TGG | - | chr3.2:5558530-5558549 | MS.gene97148:intron | 25.0% |
! | GATTCAAACCATATTCTTAA+GGG | + | chr3.2:5558653-5558672 | None:intergenic | 25.0% |
! | TAAAAACTAAGTTACAGCAT+GGG | - | chr3.2:5557441-5557460 | MS.gene97148:intron | 25.0% |
! | TAAGCTAGGATTAGATATAA+GGG | - | chr3.2:5557779-5557798 | MS.gene97148:intron | 25.0% |
! | TACCTCCAAATATATATATG+AGG | + | chr3.2:5558092-5558111 | None:intergenic | 25.0% |
! | TTAGAAATTGAATAGAGTCA+TGG | + | chr3.2:5557318-5557337 | None:intergenic | 25.0% |
! | TTCCTCATATATATATTTGG+AGG | - | chr3.2:5558087-5558106 | MS.gene97148:intron | 25.0% |
! | TTTCAATGAAACACTTCATT+AGG | - | chr3.2:5556991-5557010 | MS.gene97148:intron | 25.0% |
!! | ATATTGCCAAACTATTTTGT+AGG | - | chr3.2:5559739-5559758 | MS.gene97148:intron | 25.0% |
!! | CCATATACTCATTTTATAGT+TGG | + | chr3.2:5556632-5556651 | None:intergenic | 25.0% |
!! | TATACTCATTTTATAGTTGG+TGG | + | chr3.2:5556629-5556648 | None:intergenic | 25.0% |
!! | TCTTAAATGGTTAACCATTT+TGG | + | chr3.2:5558393-5558412 | None:intergenic | 25.0% |
!! | TTGCATAAAATTTGTTTCCA+GGG | - | chr3.2:5559102-5559121 | MS.gene97148:intron | 25.0% |
!! | TTTGCATAAAATTTGTTTCC+AGG | - | chr3.2:5559101-5559120 | MS.gene97148:intron | 25.0% |
!! | TTTTAATCATGTTTGATTCC+TGG | - | chr3.2:5557978-5557997 | MS.gene97148:intron | 25.0% |
!!! | ATTGTGTTTTTGTTTTAGTC+TGG | - | chr3.2:5560291-5560310 | MS.gene97148:intron | 25.0% |
!!! | CTGTTGTTCTGTTTTATTTT+TGG | + | chr3.2:5557223-5557242 | None:intergenic | 25.0% |
!!! | TTGTAGATGTTGTTTTTACT+TGG | - | chr3.2:5560337-5560356 | MS.gene97148:intron | 25.0% |
AAACAAGAATTCAAGTATCC+TGG | + | chr3.2:5560615-5560634 | None:intergenic | 30.0% | |
AAAGTTTCAGCTCAGAAAAT+AGG | + | chr3.2:5558720-5558739 | None:intergenic | 30.0% | |
AACATATTTGTATAGGCACT+AGG | - | chr3.2:5560786-5560805 | MS.gene97148:intron | 30.0% | |
ACATGAGATAGTATAGACAT+TGG | + | chr3.2:5559182-5559201 | None:intergenic | 30.0% | |
ACTGATGTGTAGAAAGAAAA+AGG | - | chr3.2:5560242-5560261 | MS.gene97148:intron | 30.0% | |
AGCATTCCTACAAAATAGTT+TGG | + | chr3.2:5559748-5559767 | None:intergenic | 30.0% | |
AGTGCCTATACAAATATGTT+AGG | + | chr3.2:5560786-5560805 | None:intergenic | 30.0% | |
ATATTATAGACAGAATGCCT+TGG | - | chr3.2:5557388-5557407 | MS.gene97148:intron | 30.0% | |
ATCATCGTTCAATTGGTTAA+AGG | - | chr3.2:5560674-5560693 | MS.gene97148:intron | 30.0% | |
CAAGATGAAAATGACAGTAA+TGG | - | chr3.2:5560461-5560480 | MS.gene97148:intron | 30.0% | |
CTGATGTGTAGAAAGAAAAA+GGG | - | chr3.2:5560243-5560262 | MS.gene97148:intron | 30.0% | |
GAATTAGAGAGAAGAATCAA+AGG | + | chr3.2:5559775-5559794 | None:intergenic | 30.0% | |
GAGTCTGTAAGATGAAAATA+AGG | - | chr3.2:5556762-5556781 | MS.gene97148:intron | 30.0% | |
GTAAGCTAGGATTAGATATA+AGG | - | chr3.2:5557778-5557797 | MS.gene97148:intron | 30.0% | |
TAACCCTAATTCTAAATACC+TGG | + | chr3.2:5557740-5557759 | None:intergenic | 30.0% | |
TAATATAGCCAAATTGGCAA+AGG | - | chr3.2:5557897-5557916 | MS.gene97148:intron | 30.0% | |
TATATGTTCAGAATCACAGT+TGG | + | chr3.2:5560170-5560189 | None:intergenic | 30.0% | |
TATGGCATTATATGCCAAAA+TGG | - | chr3.2:5558376-5558395 | MS.gene97148:intron | 30.0% | |
TCAAATGTCAATTAGGCTTA+AGG | - | chr3.2:5558955-5558974 | MS.gene97148:intron | 30.0% | |
TGGAATGTTCATAACTCATA+AGG | + | chr3.2:5558844-5558863 | None:intergenic | 30.0% | |
TGGCAGTTTAATTCATATCA+AGG | - | chr3.2:5558902-5558921 | MS.gene97148:intron | 30.0% | |
TGGTTTATCCCTTAAGAATA+TGG | - | chr3.2:5558642-5558661 | MS.gene97148:intron | 30.0% | |
TGTGTTCGGTTAAAAGTAAT+AGG | - | chr3.2:5560812-5560831 | MS.gene97148:intron | 30.0% | |
TTCAATTGGTTAAAGGAAGA+GGG | - | chr3.2:5560681-5560700 | MS.gene97148:intron | 30.0% | |
TTCTGATTGGAATCAACATA+TGG | - | chr3.2:5561293-5561312 | MS.gene97148:CDS | 30.0% | |
TTTATAGAACTTTGTGTGTG+TGG | - | chr3.2:5559625-5559644 | MS.gene97148:intron | 30.0% | |
! | AAAAGGATCGGATTTGTTTA+AGG | - | chr3.2:5558004-5558023 | MS.gene97148:intron | 30.0% |
! | AGAATTAGGGTTAGTGAATT+AGG | - | chr3.2:5557747-5557766 | MS.gene97148:intron | 30.0% |
! | GAATTAGGGTTAGTGAATTA+GGG | - | chr3.2:5557748-5557767 | MS.gene97148:intron | 30.0% |
! | GATATGAAGTGTTCTAATTC+CGG | - | chr3.2:5560377-5560396 | MS.gene97148:intron | 30.0% |
! | GTCTAAATTTTGTAACACAC+TGG | - | chr3.2:5558622-5558641 | MS.gene97148:intron | 30.0% |
! | TCTCATGTTTGTGAACTTTT+AGG | - | chr3.2:5559194-5559213 | MS.gene97148:intron | 30.0% |
! | TGGTTGTTGTTCTTATTGAA+AGG | - | chr3.2:5560311-5560330 | MS.gene97148:intron | 30.0% |
! | TTAGGATTGTGTAAAAGTGT+TGG | + | chr3.2:5560768-5560787 | None:intergenic | 30.0% |
!! | AATCAACCGGAATTTTGAAA+CGG | + | chr3.2:5558883-5558902 | None:intergenic | 30.0% |
!! | TAGGATTGTGTAAAAGTGTT+GGG | + | chr3.2:5560767-5560786 | None:intergenic | 30.0% |
!! | TTGGTTTTCAGCAATCAAAA+GGG | - | chr3.2:5558225-5558244 | MS.gene97148:intron | 30.0% |
AAGAGTAGACCTTTCATATC+GGG | + | chr3.2:5558485-5558504 | None:intergenic | 35.0% | |
AATCAGAATTTCAGAGAAGC+AGG | + | chr3.2:5561281-5561300 | None:intergenic | 35.0% | |
ACAAAAGCAGACATTAACAC+TGG | + | chr3.2:5561083-5561102 | None:intergenic | 35.0% | |
ACAAGAATAAGATCGCGTTT+AGG | + | chr3.2:5559895-5559914 | None:intergenic | 35.0% | |
AGTAACACAGGTAAAGAGAA+GGG | + | chr3.2:5559439-5559458 | None:intergenic | 35.0% | |
ATAAGGGATGAATCCAACAT+CGG | - | chr3.2:5557795-5557814 | MS.gene97148:intron | 35.0% | |
ATCAAGCATTTCGCATTTCT+TGG | + | chr3.2:5558312-5558331 | None:intergenic | 35.0% | |
ATTAAGGATGGATGTATGGT+AGG | + | chr3.2:5556867-5556886 | None:intergenic | 35.0% | |
ATTCATCAAGTCATGAGCAA+AGG | - | chr3.2:5556926-5556945 | MS.gene97148:CDS | 35.0% | |
CAAACCTTTGACCAATAATC+AGG | + | chr3.2:5557871-5557890 | None:intergenic | 35.0% | |
CAAGAGTAGACCTTTCATAT+CGG | + | chr3.2:5558486-5558505 | None:intergenic | 35.0% | |
CACAAAATAGCTATACGACT+AGG | - | chr3.2:5561345-5561364 | MS.gene97148:CDS | 35.0% | |
CATGGTACGATAACAAAGTA+TGG | - | chr3.2:5557279-5557298 | MS.gene97148:intron | 35.0% | |
CTAAACTTACAGGAAGAAAC+AGG | - | chr3.2:5558174-5558193 | MS.gene97148:intron | 35.0% | |
CTCGTTGTGGTTCTTATAAT+TGG | - | chr3.2:5558347-5558366 | MS.gene97148:intron | 35.0% | |
CTGTCTATAATATACCCTCA+TGG | + | chr3.2:5557381-5557400 | None:intergenic | 35.0% | |
CTTCTACCGTTTCAAAATTC+CGG | - | chr3.2:5558874-5558893 | MS.gene97148:intron | 35.0% | |
CTTTAACCTTTCAGCTTACT+AGG | + | chr3.2:5557648-5557667 | None:intergenic | 35.0% | |
CTTTGACATCATCGTTCAAT+TGG | - | chr3.2:5560667-5560686 | MS.gene97148:intron | 35.0% | |
GAATCCTGATTATTGGTCAA+AGG | - | chr3.2:5557864-5557883 | MS.gene97148:intron | 35.0% | |
GAATTAAACTGCCAATCAAC+CGG | + | chr3.2:5558896-5558915 | None:intergenic | 35.0% | |
GCTATTATATGGTGTGTTTG+TGG | - | chr3.2:5558506-5558525 | MS.gene97148:intron | 35.0% | |
GTACTGTAATAGATAGACCT+TGG | - | chr3.2:5558799-5558818 | MS.gene97148:intron | 35.0% | |
GTCTACTCTTGGCTATTATA+TGG | - | chr3.2:5558495-5558514 | MS.gene97148:intron | 35.0% | |
GTTCAATTGGTTAAAGGAAG+AGG | - | chr3.2:5560680-5560699 | MS.gene97148:intron | 35.0% | |
GTTTCAAAATTCCGGTTGAT+TGG | - | chr3.2:5558882-5558901 | MS.gene97148:intron | 35.0% | |
TAAGTTACAGCATGGGAATA+TGG | - | chr3.2:5557448-5557467 | MS.gene97148:intron | 35.0% | |
TGAGATTAAGGATGGATGTA+TGG | + | chr3.2:5556871-5556890 | None:intergenic | 35.0% | |
TGTTTGATTCCTGGACTAAA+AGG | - | chr3.2:5557987-5558006 | MS.gene97148:intron | 35.0% | |
TTACAGACTCTTGCTTATAG+TGG | + | chr3.2:5556752-5556771 | None:intergenic | 35.0% | |
TTAGGGTTAGAATGTAAGCT+AGG | - | chr3.2:5557765-5557784 | MS.gene97148:intron | 35.0% | |
TTCAATTTACGTATGCGAAG+AGG | + | chr3.2:5556905-5556924 | None:intergenic | 35.0% | |
TTCATCAAGTCATGAGCAAA+GGG | - | chr3.2:5556927-5556946 | MS.gene97148:CDS | 35.0% | |
TTGACGTAAATGTATACGCA+AGG | - | chr3.2:5556810-5556829 | MS.gene97148:intron | 35.0% | |
TTGGAATAGACGATGTATGA+AGG | + | chr3.2:5558293-5558312 | None:intergenic | 35.0% | |
! | AAAATACCTTCCCTTTAGAG+TGG | + | chr3.2:5558261-5558280 | None:intergenic | 35.0% |
! | ATAGACATTGGTTAGACACA+TGG | + | chr3.2:5559170-5559189 | None:intergenic | 35.0% |
! | ATCGGATTTGTTTAAGGTAG+TGG | - | chr3.2:5558010-5558029 | MS.gene97148:intron | 35.0% |
! | ATTAACACTGGTGCTTCTTT+TGG | + | chr3.2:5561071-5561090 | None:intergenic | 35.0% |
! | CTTTTACACACCACTCTAAA+GGG | - | chr3.2:5558248-5558267 | MS.gene97148:intron | 35.0% |
! | GTTTTTGTATGTTCTCGTTG+TGG | - | chr3.2:5558334-5558353 | MS.gene97148:intron | 35.0% |
! | TTATCGTACCATGCATTGAT+TGG | + | chr3.2:5557272-5557291 | None:intergenic | 35.0% |
! | TTCATGGGAGGAACAATTTT+TGG | + | chr3.2:5560098-5560117 | None:intergenic | 35.0% |
!! | TGCTTCTCTGAAATTCTGAT+TGG | - | chr3.2:5561280-5561299 | MS.gene97148:CDS | 35.0% |
!! | TTGAGTGTTGAGAACAATAG+AGG | - | chr3.2:5558596-5558615 | MS.gene97148:CDS | 35.0% |
!! | TTTGTTTCCAGGGTATTGAT+AGG | - | chr3.2:5559112-5559131 | MS.gene97148:intron | 35.0% |
!!! | ACTCATTTTATAGTTGGTGG+TGG | + | chr3.2:5556626-5556645 | None:intergenic | 35.0% |
!!! | CAGTTGCTTTTGCAAAATCA+CGG | - | chr3.2:5560125-5560144 | MS.gene97148:intron | 35.0% |
!!! | CATAGTCTAATGCCACTTTT+CGG | - | chr3.2:5560885-5560904 | MS.gene97148:intron | 35.0% |
!!! | GTTGGTTTTCAGCAATCAAA+AGG | - | chr3.2:5558224-5558243 | MS.gene97148:intron | 35.0% |
AAGTGATGAACACAGACTGT+TGG | + | chr3.2:5557826-5557845 | None:intergenic | 40.0% | |
ACAGCATGATTCACATTTGC+AGG | - | chr3.2:5556957-5556976 | MS.gene97148:intron | 40.0% | |
ACGCGTCAAGTTCTATGATT+AGG | - | chr3.2:5559829-5559848 | MS.gene97148:intron | 40.0% | |
AGACGTTACCAATCAATGCA+TGG | - | chr3.2:5557261-5557280 | MS.gene97148:intron | 40.0% | |
AGAGTAGACCTTTCATATCG+GGG | + | chr3.2:5558484-5558503 | None:intergenic | 40.0% | |
AGTGATGAACACAGACTGTT+GGG | + | chr3.2:5557825-5557844 | None:intergenic | 40.0% | |
ATGAAAGAATCCTTGCACGA+TGG | - | chr3.2:5557349-5557368 | MS.gene97148:intron | 40.0% | |
ATGAGAATATGGCAAGGAGT+GGG | - | chr3.2:5557485-5557504 | MS.gene97148:intron | 40.0% | |
CATTCACAACGTTCAACTCA+AGG | - | chr3.2:5557072-5557091 | MS.gene97148:intron | 40.0% | |
CCCTAATTCTAAATACCTGG+CGG | + | chr3.2:5557737-5557756 | None:intergenic | 40.0% | |
CCTACAAGAACAACATCAAC+CGG | + | chr3.2:5560399-5560418 | None:intergenic | 40.0% | |
CGATATGAAAGGTCTACTCT+TGG | - | chr3.2:5558484-5558503 | MS.gene97148:intron | 40.0% | |
CGGCTAAGAATCCTGATTAT+TGG | - | chr3.2:5557857-5557876 | MS.gene97148:intron | 40.0% | |
CTATCTAATGCAAGTGAGTG+TGG | - | chr3.2:5559651-5559670 | MS.gene97148:intron | 40.0% | |
CTGTGTTCATCACTTTCACA+GGG | - | chr3.2:5557831-5557850 | MS.gene97148:intron | 40.0% | |
GAAAAAGGGATGAGCTTGAT+TGG | - | chr3.2:5560257-5560276 | MS.gene97148:intron | 40.0% | |
GAGTAACACAGGTAAAGAGA+AGG | + | chr3.2:5559440-5559459 | None:intergenic | 40.0% | |
GATTCCTGGACTAAAAGGAT+CGG | - | chr3.2:5557992-5558011 | MS.gene97148:intron | 40.0% | |
GATTGCAAAAGCTATGAAGC+TGG | - | chr3.2:5560043-5560062 | MS.gene97148:CDS | 40.0% | |
GCAAAATACCAACCGAAAAG+TGG | + | chr3.2:5560900-5560919 | None:intergenic | 40.0% | |
GCTATCTGCTGATGAGATTA+AGG | + | chr3.2:5556883-5556902 | None:intergenic | 40.0% | |
GGCTGTCTGATGCAAAAAAT+AGG | - | chr3.2:5561144-5561163 | MS.gene97148:intron | 40.0% | |
GTAAGACAGTTGAAGAAGTG+TGG | + | chr3.2:5559398-5559417 | None:intergenic | 40.0% | |
GTGAGATTGCACTTCAAACT+TGG | + | chr3.2:5556724-5556743 | None:intergenic | 40.0% | |
TAACAAAGTATGGACGTCGT+CGG | - | chr3.2:5557289-5557308 | MS.gene97148:intron | 40.0% | |
TACAGCATGGGAATATGGAA+AGG | - | chr3.2:5557453-5557472 | MS.gene97148:intron | 40.0% | |
TCATCACTTTCACAGGGATA+CGG | - | chr3.2:5557837-5557856 | MS.gene97148:intron | 40.0% | |
TCCATGTGTATGTGATCTCA+AGG | - | chr3.2:5559554-5559573 | MS.gene97148:intron | 40.0% | |
TCCTTGAGATCACATACACA+TGG | + | chr3.2:5559558-5559577 | None:intergenic | 40.0% | |
TCTGCTGATGAGATTAAGGA+TGG | + | chr3.2:5556879-5556898 | None:intergenic | 40.0% | |
TCTGTGTTCATCACTTTCAC+AGG | - | chr3.2:5557830-5557849 | MS.gene97148:intron | 40.0% | |
! | AAATCCGATCCTTTTAGTCC+AGG | + | chr3.2:5557999-5558018 | None:intergenic | 40.0% |
! | ATTTTCAAAAGATTGCCGCC+AGG | - | chr3.2:5557719-5557738 | MS.gene97148:intron | 40.0% |
! | CCGCCAGGTATTTAGAATTA+GGG | - | chr3.2:5557734-5557753 | MS.gene97148:intron | 40.0% |
! | GCTTTTACACACCACTCTAA+AGG | - | chr3.2:5558247-5558266 | MS.gene97148:intron | 40.0% |
! | GGATTTGTTTAAGGTAGTGG+AGG | - | chr3.2:5558013-5558032 | MS.gene97148:intron | 40.0% |
!! | TTTAAGGTAGTGGAGGCTAA+TGG | - | chr3.2:5558020-5558039 | MS.gene97148:intron | 40.0% |
!!! | TGGGAGGAACAATTTTTGGT+CGG | + | chr3.2:5560094-5560113 | None:intergenic | 40.0% |
!!! | TTTTTTGCATCAGACAGCCT+AGG | + | chr3.2:5561143-5561162 | None:intergenic | 40.0% |
AAGCAACTGAGCTCGATTCA+TGG | + | chr3.2:5560114-5560133 | None:intergenic | 45.0% | |
AAGCTTGCCTATCAATACCC+TGG | + | chr3.2:5559122-5559141 | None:intergenic | 45.0% | |
AAGTCATGAGCAAAGGGCAA+TGG | - | chr3.2:5556933-5556952 | MS.gene97148:CDS | 45.0% | |
AATGCGCCTAGTAAGCTGAA+AGG | - | chr3.2:5557639-5557658 | MS.gene97148:intron | 45.0% | |
AATTCAAGTATCCTGGCCGT+GGG | + | chr3.2:5560608-5560627 | None:intergenic | 45.0% | |
ACAACAGACCCCGATATGAA+AGG | - | chr3.2:5558473-5558492 | MS.gene97148:intron | 45.0% | |
ACGGTAGAAGCTTCAAGCTT+TGG | + | chr3.2:5558864-5558883 | None:intergenic | 45.0% | |
ACTGTTGGGATTACCGATGT+TGG | + | chr3.2:5557811-5557830 | None:intergenic | 45.0% | |
AGCAACTGAGCTCGATTCAT+GGG | + | chr3.2:5560113-5560132 | None:intergenic | 45.0% | |
ATTCACAACTCTCTCCAGCT+CGG | - | chr3.2:5557124-5557143 | MS.gene97148:intron | 45.0% | |
CACGATGGTACAATCCATGA+GGG | - | chr3.2:5557364-5557383 | MS.gene97148:intron | 45.0% | |
CAGTTGGTTAGCATCACTGT+AGG | + | chr3.2:5560154-5560173 | None:intergenic | 45.0% | |
CATGAGAATATGGCAAGGAG+TGG | - | chr3.2:5557484-5557503 | MS.gene97148:intron | 45.0% | |
CATGGGAATATGGAAAGGAG+TGG | - | chr3.2:5557458-5557477 | MS.gene97148:intron | 45.0% | |
CCAGCACTTAGCTTCTTAAC+AGG | + | chr3.2:5560491-5560510 | None:intergenic | 45.0% | |
CCTGTTAAGAAGCTAAGTGC+TGG | - | chr3.2:5560488-5560507 | MS.gene97148:intron | 45.0% | |
CTGTCTTACAGCACATCTCA+AGG | - | chr3.2:5559409-5559428 | MS.gene97148:intron | 45.0% | |
GAGTGGGTACTTAAATGACC+AGG | - | chr3.2:5557501-5557520 | MS.gene97148:intron | 45.0% | |
GCTACTGAGATGCGAAAGAA+GGG | - | chr3.2:5558200-5558219 | MS.gene97148:intron | 45.0% | |
TAGACGATGTATGAAGGCAG+TGG | + | chr3.2:5558287-5558306 | None:intergenic | 45.0% | |
TAGATGAGTGTGGGAATCTG+TGG | + | chr3.2:5556682-5556701 | None:intergenic | 45.0% | |
TAGGCACTAGGCAATGTGTT+CGG | - | chr3.2:5560798-5560817 | MS.gene97148:intron | 45.0% | |
TGCTACTGAGATGCGAAAGA+AGG | - | chr3.2:5558199-5558218 | MS.gene97148:intron | 45.0% | |
! | ATGGATTGTACCATCGTGCA+AGG | + | chr3.2:5557362-5557381 | None:intergenic | 45.0% |
! | CCGGTTGATGTTGTTCTTGT+AGG | - | chr3.2:5560396-5560415 | MS.gene97148:intron | 45.0% |
! | GAATCTGTGGTAGTGTGATC+TGG | + | chr3.2:5556669-5556688 | None:intergenic | 45.0% |
! | GCCGCCAGGTATTTAGAATT+AGG | - | chr3.2:5557733-5557752 | MS.gene97148:intron | 45.0% |
! | GGAAGCATGAGAATATGGCA+AGG | - | chr3.2:5557479-5557498 | MS.gene97148:intron | 45.0% |
! | GGAGTGGAAGCATGAGAATA+TGG | - | chr3.2:5557474-5557493 | MS.gene97148:intron | 45.0% |
! | TACACACCACTCTAAAGGGA+AGG | - | chr3.2:5558252-5558271 | MS.gene97148:intron | 45.0% |
! | TCTGAGACGCTCAATGTCAT+TGG | + | chr3.2:5558745-5558764 | None:intergenic | 45.0% |
!!! | GGGAGGAACAATTTTTGGTC+GGG | + | chr3.2:5560093-5560112 | None:intergenic | 45.0% |
!!! | GTCTAATGCCACTTTTCGGT+TGG | - | chr3.2:5560889-5560908 | MS.gene97148:intron | 45.0% |
AACTGAGCTCGATTCATGGG+AGG | + | chr3.2:5560110-5560129 | None:intergenic | 50.0% | |
CGTTGCTGCCTTTGCCAATT+TGG | + | chr3.2:5557908-5557927 | None:intergenic | 50.0% | |
CTTCACAAAGCCTTCTAGCG+AGG | - | chr3.2:5556585-5556604 | MS.gene97148:CDS | 50.0% | |
GAATTCAAGTATCCTGGCCG+TGG | + | chr3.2:5560609-5560628 | None:intergenic | 50.0% | |
GAGATGCGAAAGAAGGGAGT+TGG | - | chr3.2:5558206-5558225 | MS.gene97148:intron | 50.0% | |
GCAAAATGCTCCTCGCTAGA+AGG | + | chr3.2:5556598-5556617 | None:intergenic | 50.0% | |
GCACGATGGTACAATCCATG+AGG | - | chr3.2:5557363-5557382 | MS.gene97148:intron | 50.0% | |
TATGAAGCTGGAGTTCCGTG+AGG | - | chr3.2:5560055-5560074 | MS.gene97148:CDS | 50.0% | |
TGAGAACCAGCTCGATGAAC+TGG | - | chr3.2:5561043-5561062 | MS.gene97148:intron | 50.0% | |
TGGACAACCACGACACTTGA+CGG | + | chr3.2:5559378-5559397 | None:intergenic | 50.0% | |
TGGGGATCGTAGATGAGTGT+GGG | + | chr3.2:5556691-5556710 | None:intergenic | 50.0% | |
TGTGCGGCGTGTCTTGTATA+AGG | - | chr3.2:5557930-5557949 | MS.gene97148:intron | 50.0% | |
TTGGTTCCAGTTCATCGAGC+TGG | + | chr3.2:5561052-5561071 | None:intergenic | 50.0% | |
! | CTCGCTAGAAGGCTTTGTGA+AGG | + | chr3.2:5556587-5556606 | None:intergenic | 50.0% |
AAACTTGGACTCCTGCGCTG+GGG | + | chr3.2:5556709-5556728 | None:intergenic | 55.0% | |
AAGTATCCTGGCCGTGGGTA+GGG | + | chr3.2:5560603-5560622 | None:intergenic | 55.0% | |
ACACGCTCTCTCATCTGCCA+AGG | + | chr3.2:5557408-5557427 | None:intergenic | 55.0% | |
CAAACTTGGACTCCTGCGCT+GGG | + | chr3.2:5556710-5556729 | None:intergenic | 55.0% | |
CAAAGGCAGCAACGACTGTG+CGG | - | chr3.2:5557914-5557933 | MS.gene97148:intron | 55.0% | |
CCTAGGTGTGAGTGATGGCT+CGG | + | chr3.2:5561126-5561145 | None:intergenic | 55.0% | |
CTGGGGATCGTAGATGAGTG+TGG | + | chr3.2:5556692-5556711 | None:intergenic | 55.0% | |
GACAGCCTAGGTGTGAGTGA+TGG | + | chr3.2:5561131-5561150 | None:intergenic | 55.0% | |
GAGTGTGGTGTGTGTGTGTG+TGG | - | chr3.2:5559666-5559685 | MS.gene97148:intron | 55.0% | |
GCTCGGATGCATTCTTCTGC+TGG | + | chr3.2:5561109-5561128 | None:intergenic | 55.0% | |
GGCGAGTTGCGTCTTCACAA+AGG | - | chr3.2:5560509-5560528 | MS.gene97148:intron | 55.0% | |
GGGCATTACGTACCTCCTCA+CGG | + | chr3.2:5560073-5560092 | None:intergenic | 55.0% | |
TCAAACTTGGACTCCTGCGC+TGG | + | chr3.2:5556711-5556730 | None:intergenic | 55.0% | |
! | ATGAGAGAGCGTGTGGTGCA+TGG | - | chr3.2:5557414-5557433 | MS.gene97148:intron | 55.0% |
! | TCCAGCTCGGTGACAGGATT+GGG | - | chr3.2:5557137-5557156 | MS.gene97148:intron | 55.0% |
! | TTGGCAGATGAGAGAGCGTG+TGG | - | chr3.2:5557407-5557426 | MS.gene97148:intron | 55.0% |
AGTATCCTGGCCGTGGGTAG+GGG | + | chr3.2:5560602-5560621 | None:intergenic | 60.0% | |
CAAGTATCCTGGCCGTGGGT+AGG | + | chr3.2:5560604-5560623 | None:intergenic | 60.0% | |
CCGAGCCATCACTCACACCT+AGG | - | chr3.2:5561123-5561142 | MS.gene97148:intron | 60.0% | |
GAAGCTGGAGTTCCGTGAGG+AGG | - | chr3.2:5560058-5560077 | MS.gene97148:CDS | 60.0% | |
TCATCTACGATCCCCAGCGC+AGG | - | chr3.2:5556695-5556714 | MS.gene97148:intron | 60.0% | |
TCCCAATCCTGTCACCGAGC+TGG | + | chr3.2:5557141-5557160 | None:intergenic | 60.0% | |
! | ACTCTCTCCAGCTCGGTGAC+AGG | - | chr3.2:5557131-5557150 | MS.gene97148:intron | 60.0% |
! | CTCCAGCTCGGTGACAGGAT+TGG | - | chr3.2:5557136-5557155 | MS.gene97148:intron | 60.0% |
! | GGATTCGCCGTCAAGTGTCG+TGG | - | chr3.2:5559368-5559387 | MS.gene97148:intron | 60.0% |
GTGGCACTTGCCCCTACCCA+CGG | - | chr3.2:5560589-5560608 | MS.gene97148:intron | 65.0% | |
ACTTGCCCCTACCCACGGCC+AGG | - | chr3.2:5560594-5560613 | MS.gene97148:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 5556577 | 5561413 | 5556577 | ID=MS.gene97148 |
chr3.2 | mRNA | 5556577 | 5561413 | 5556577 | ID=MS.gene97148.t1;Parent=MS.gene97148 |
chr3.2 | exon | 5561223 | 5561413 | 5561223 | ID=MS.gene97148.t1.exon1;Parent=MS.gene97148.t1 |
chr3.2 | CDS | 5561223 | 5561413 | 5561223 | ID=cds.MS.gene97148.t1;Parent=MS.gene97148.t1 |
chr3.2 | exon | 5560039 | 5560138 | 5560039 | ID=MS.gene97148.t1.exon2;Parent=MS.gene97148.t1 |
chr3.2 | CDS | 5560039 | 5560138 | 5560039 | ID=cds.MS.gene97148.t1;Parent=MS.gene97148.t1 |
chr3.2 | exon | 5558560 | 5558634 | 5558560 | ID=MS.gene97148.t1.exon3;Parent=MS.gene97148.t1 |
chr3.2 | CDS | 5558560 | 5558634 | 5558560 | ID=cds.MS.gene97148.t1;Parent=MS.gene97148.t1 |
chr3.2 | exon | 5556825 | 5556973 | 5556825 | ID=MS.gene97148.t1.exon4;Parent=MS.gene97148.t1 |
chr3.2 | CDS | 5556825 | 5556973 | 5556825 | ID=cds.MS.gene97148.t1;Parent=MS.gene97148.t1 |
chr3.2 | exon | 5556577 | 5556649 | 5556577 | ID=MS.gene97148.t1.exon5;Parent=MS.gene97148.t1 |
chr3.2 | CDS | 5556577 | 5556649 | 5556577 | ID=cds.MS.gene97148.t1;Parent=MS.gene97148.t1 |
Gene Sequence |
Protein sequence |