Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98963.t1 | XP_013466567.1 | 91.9 | 506 | 41 | 0 | 1 | 506 | 1 | 506 | 6.80E-227 | 796.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98963.t1 | Q8S9K3 | 30.9 | 223 | 135 | 5 | 65 | 283 | 93 | 300 | 1.2e-22 | 109.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98963.t1 | A0A072VGP2 | 91.9 | 506 | 41 | 0 | 1 | 506 | 1 | 506 | 4.9e-227 | 796.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049824 | MS.gene98963 | 0.822298 | 2.55E-53 | -1.69E-46 |
| MS.gene049825 | MS.gene98963 | 0.809404 | 1.92E-50 | -1.69E-46 |
| MS.gene049873 | MS.gene98963 | 0.801583 | 8.41E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene98963 | 0.829841 | 4.11E-55 | -1.69E-46 |
| MS.gene051700 | MS.gene98963 | 0.832062 | 1.17E-55 | -1.69E-46 |
| MS.gene051744 | MS.gene98963 | 0.817772 | 2.77E-52 | -1.69E-46 |
| MS.gene052582 | MS.gene98963 | 0.812729 | 3.66E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene98963 | 0.825216 | 5.29E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene98963 | 0.822361 | 2.47E-53 | -1.69E-46 |
| MS.gene054967 | MS.gene98963 | 0.805676 | 1.19E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene98963 | 0.81288 | 3.39E-51 | -1.69E-46 |
| MS.gene055778 | MS.gene98963 | 0.809163 | 2.17E-50 | -1.69E-46 |
| MS.gene059084 | MS.gene98963 | 0.81621 | 6.22E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene98963 | 0.804188 | 2.44E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene98963 | 0.80329 | 3.74E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98963.t1 | MTR_1g032260 | 92.490 | 506 | 38 | 0 | 1 | 506 | 1 | 506 | 0.0 | 960 |
| MS.gene98963.t1 | MTR_6g069400 | 38.109 | 349 | 181 | 10 | 39 | 365 | 43 | 378 | 2.91e-76 | 248 |
| MS.gene98963.t1 | MTR_6g069400 | 36.301 | 146 | 60 | 5 | 255 | 388 | 345 | 469 | 3.23e-20 | 93.6 |
| MS.gene98963.t1 | MTR_7g113360 | 40.532 | 301 | 127 | 9 | 59 | 327 | 123 | 403 | 2.57e-63 | 221 |
| MS.gene98963.t1 | MTR_7g087047 | 25.402 | 311 | 167 | 8 | 54 | 364 | 70 | 315 | 5.87e-31 | 128 |
| MS.gene98963.t1 | MTR_7g087047 | 50.000 | 66 | 33 | 0 | 299 | 364 | 75 | 140 | 1.64e-19 | 92.8 |
| MS.gene98963.t1 | MTR_7g087047 | 31.034 | 145 | 89 | 2 | 182 | 326 | 2 | 135 | 3.03e-18 | 88.6 |
| MS.gene98963.t1 | MTR_2g075450 | 28.671 | 143 | 92 | 2 | 101 | 240 | 144 | 279 | 7.01e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98963.t1 | AT1G70650 | 46.035 | 454 | 192 | 7 | 61 | 499 | 43 | 458 | 1.12e-128 | 383 |
| MS.gene98963.t1 | AT1G70650 | 59.236 | 314 | 120 | 3 | 61 | 373 | 43 | 349 | 4.40e-126 | 380 |
| MS.gene98963.t1 | AT1G55040 | 38.218 | 348 | 154 | 7 | 53 | 378 | 138 | 446 | 5.32e-65 | 226 |
| MS.gene98963.t1 | AT1G48570 | 33.420 | 386 | 174 | 7 | 62 | 368 | 60 | 441 | 5.88e-65 | 218 |
| MS.gene98963.t1 | AT5G17790 | 29.283 | 321 | 162 | 9 | 65 | 379 | 93 | 354 | 1.81e-34 | 138 |
| MS.gene98963.t1 | AT1G53460 | 29.000 | 200 | 124 | 6 | 43 | 231 | 120 | 312 | 1.92e-13 | 71.6 |
Find 92 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAACTGCTTGTCTTAATTT+TGG | 0.197075 | 1.4:-16807561 | MS.gene98963:CDS |
| GTCTTCTATGATCACATTTC+AGG | 0.201359 | 1.4:+16805092 | None:intergenic |
| TTGTTGTTGATTCCTCCTTT+TGG | 0.239852 | 1.4:+16807728 | None:intergenic |
| AATGGAATGTTTGATCAAAA+AGG | 0.276965 | 1.4:-16807652 | MS.gene98963:CDS |
| CAAACCATCTCTAAATAAAA+TGG | 0.297671 | 1.4:-16805810 | MS.gene98963:CDS |
| GCCTGAATGGGTAGAGTTAA+TGG | 0.298941 | 1.4:-16807670 | MS.gene98963:CDS |
| GACATCGTTTCAAAATGTTT+TGG | 0.303291 | 1.4:+16807856 | None:intergenic |
| ATAAGAGTTATTGTAACATT+TGG | 0.303310 | 1.4:-16806164 | MS.gene98963:CDS |
| TCCATTAACTCTACCCATTC+AGG | 0.326694 | 1.4:+16807669 | None:intergenic |
| ACTTTGCCAAGCATGCCTTT+TGG | 0.337086 | 1.4:+16804754 | None:intergenic |
| TTATATACTTCTGCCCTTTG+TGG | 0.339392 | 1.4:+16804797 | None:intergenic |
| CCCATTTGAGAATCCTCATT+TGG | 0.340313 | 1.4:-16807607 | MS.gene98963:CDS |
| CTCTTTCTTTCTGACGTCCT+TGG | 0.340613 | 1.4:+16804953 | None:intergenic |
| ACAAGCAGTTCTAATAAGAT+TGG | 0.356703 | 1.4:+16807572 | None:intergenic |
| TGGGTTCATCAAACTCGTTT+TGG | 0.373402 | 1.4:+16807748 | None:intergenic |
| AGAGAACTCAAATGATAATT+CGG | 0.394481 | 1.4:-16804867 | MS.gene98963:CDS |
| TTTCTCATCCATGGCCTGAA+TGG | 0.413730 | 1.4:-16807683 | MS.gene98963:CDS |
| GGATTAATGCGACGGTTTGA+AGG | 0.414616 | 1.4:+16805250 | None:intergenic |
| TCCAAATGAGGATTCTCAAA+TGG | 0.418185 | 1.4:+16807606 | None:intergenic |
| TTATCCACTGAACCGATGAT+TGG | 0.424796 | 1.4:+16805833 | None:intergenic |
| GATGAGATGGCCGAATGGTT+TGG | 0.424798 | 1.4:-16804683 | MS.gene98963:CDS |
| CTAGTCTTACCTCCAGCAAT+AGG | 0.425161 | 1.4:+16804830 | None:intergenic |
| ACAGCAACCTCTGTGATGTC+TGG | 0.445160 | 1.4:+16805716 | None:intergenic |
| TTGGAAAGGGTAAGAATTCA+AGG | 0.445851 | 1.4:-16804664 | MS.gene98963:CDS |
| ATCAGTCCAAAAGGCATGCT+TGG | 0.456188 | 1.4:-16804760 | MS.gene98963:CDS |
| TTTGAAGCATTTGACACCTT+AGG | 0.458210 | 1.4:+16805070 | None:intergenic |
| CCAAATGAGGATTCTCAAAT+GGG | 0.462125 | 1.4:+16807607 | None:intergenic |
| CATCTGAATCCTCTAGATAA+GGG | 0.463100 | 1.4:-16805683 | MS.gene98963:CDS |
| TAGTCACTTACCTTTGAAGA+AGG | 0.465479 | 1.4:-16805429 | MS.gene98963:CDS |
| TTGTATTCTTTGCAAAATTG+AGG | 0.466161 | 1.4:+16805296 | None:intergenic |
| GACTCGCATTCCCACTCCCC+TGG | 0.466634 | 1.4:+16805229 | None:intergenic |
| TCAAACCGTCGCATTAATCC+AGG | 0.470383 | 1.4:-16805247 | MS.gene98963:CDS |
| GTGTAGCTCGTGTAATTTGA+GGG | 0.472320 | 1.4:-16805948 | MS.gene98963:CDS |
| TCATCTGAATCCTCTAGATA+AGG | 0.474013 | 1.4:-16805684 | MS.gene98963:CDS |
| TTCTCATCCATGGCCTGAAT+GGG | 0.481289 | 1.4:-16807682 | MS.gene98963:CDS |
| CTTACCCTTTCCAAACCATT+CGG | 0.484967 | 1.4:+16804673 | None:intergenic |
| TATCCACTGAACCGATGATT+GGG | 0.490233 | 1.4:+16805834 | None:intergenic |
| TACCTTTGAAGAAGGGAGAC+TGG | 0.492224 | 1.4:-16805421 | MS.gene98963:CDS |
| TGATATTTCTAGCAAAGTTG+TGG | 0.505369 | 1.4:+16805510 | None:intergenic |
| TCTGTGATGTCTGGAAAAGT+AGG | 0.505791 | 1.4:+16805725 | None:intergenic |
| CTGTGATGTCTGGAAAAGTA+GGG | 0.507201 | 1.4:+16805726 | None:intergenic |
| TTCAGTTAAAGCAAGGCGAT+TGG | 0.509614 | 1.4:-16805649 | MS.gene98963:CDS |
| AAGATGTTTGCAATGTAAAG+AGG | 0.517495 | 1.4:-16805275 | MS.gene98963:CDS |
| AACCGATATCCTGCAAAAGC+AGG | 0.518241 | 1.4:+16804995 | None:intergenic |
| AACTCTACCCATTCAGGCCA+TGG | 0.522534 | 1.4:+16807675 | None:intergenic |
| TGTGTAGCTCGTGTAATTTG+AGG | 0.526404 | 1.4:-16805949 | MS.gene98963:CDS |
| AAGTCGAGATTTGTAGAAGA+AGG | 0.530158 | 1.4:-16804911 | MS.gene98963:CDS |
| AGATGTTTGCAATGTAAAGA+GGG | 0.532782 | 1.4:-16805274 | MS.gene98963:CDS |
| AGTCGCCAAATCAGTCCAAA+AGG | 0.534449 | 1.4:-16804769 | MS.gene98963:CDS |
| ATCTCATCATCATCGGTACT+CGG | 0.534616 | 1.4:+16804698 | None:intergenic |
| GTGAAAACACGCGAAGATGA+AGG | 0.537997 | 1.4:-16805905 | MS.gene98963:CDS |
| GGATGAGAAATCTGAAAAGC+GGG | 0.543444 | 1.4:+16807696 | None:intergenic |
| CATCAATTTCAGAAGAAACA+TGG | 0.543784 | 1.4:-16805119 | MS.gene98963:CDS |
| AGTCACTTACCTTTGAAGAA+GGG | 0.549272 | 1.4:-16805428 | MS.gene98963:CDS |
| GTCGCATTAATCCAGGGGAG+TGG | 0.553077 | 1.4:-16805240 | MS.gene98963:CDS |
| ACGAGTTTGATGAACCCAAA+AGG | 0.559599 | 1.4:-16807743 | MS.gene98963:CDS |
| GATAGAAAAGTGGTCAACTC+AGG | 0.561924 | 1.4:-16806128 | MS.gene98963:CDS |
| ACTCCCCTGGATTAATGCGA+CGG | 0.562909 | 1.4:+16805242 | None:intergenic |
| GGACGTCAGAAAGAAAGAGC+AGG | 0.564051 | 1.4:-16804949 | MS.gene98963:CDS |
| ATGTGATCATAGAAGACCTA+AGG | 0.565819 | 1.4:-16805086 | MS.gene98963:CDS |
| TAGCATGTCTGAGCCACAAA+GGG | 0.568510 | 1.4:-16804810 | MS.gene98963:CDS |
| ATCCAGTCTCCCTTCTTCAA+AGG | 0.570994 | 1.4:+16805419 | None:intergenic |
| TTTACCTTAAAATATGAGCA+TGG | 0.571764 | 1.4:+16807532 | None:intergenic |
| TCGCATTAATCCAGGGGAGT+GGG | 0.573860 | 1.4:-16805239 | MS.gene98963:CDS |
| AGCATATGCAGGCATTGATG+AGG | 0.574530 | 1.4:-16806093 | MS.gene98963:CDS |
| TATGGACTTGACCCAATCAT+CGG | 0.575562 | 1.4:-16805845 | MS.gene98963:CDS |
| TCCAAGCTTAGATAGAAAAG+TGG | 0.585923 | 1.4:-16806138 | MS.gene98963:CDS |
| AAGCGTCTGAGAGCATATGC+AGG | 0.588329 | 1.4:-16806104 | MS.gene98963:CDS |
| AAAGATGTTCAGTTAAAGCA+AGG | 0.588511 | 1.4:-16805656 | MS.gene98963:CDS |
| TGACCCAATCATCGGTTCAG+TGG | 0.589471 | 1.4:-16805837 | MS.gene98963:CDS |
| TTCGGCCATCTCATCATCAT+CGG | 0.594552 | 1.4:+16804691 | None:intergenic |
| GATGGCCGAATGGTTTGGAA+AGG | 0.598136 | 1.4:-16804678 | MS.gene98963:CDS |
| ATGGCCGAATGGTTTGGAAA+GGG | 0.602894 | 1.4:-16804677 | MS.gene98963:CDS |
| AGAAGAGCAAAACTCATCAT+CGG | 0.606713 | 1.4:+16804727 | None:intergenic |
| GAGTACCGATGATGATGAGA+TGG | 0.609459 | 1.4:-16804696 | MS.gene98963:CDS |
| GCATATGCAGGCATTGATGA+GGG | 0.610102 | 1.4:-16806092 | MS.gene98963:CDS |
| CTAGCATGTCTGAGCCACAA+AGG | 0.611817 | 1.4:-16804811 | MS.gene98963:CDS |
| GTAGCTCGTGTAATTTGAGG+GGG | 0.617394 | 1.4:-16805946 | MS.gene98963:CDS |
| CAAACCGTCGCATTAATCCA+GGG | 0.628686 | 1.4:-16805246 | MS.gene98963:CDS |
| TGGATGAGAAATCTGAAAAG+CGG | 0.630241 | 1.4:+16807695 | None:intergenic |
| TGTAGCTCGTGTAATTTGAG+GGG | 0.631403 | 1.4:-16805947 | MS.gene98963:CDS |
| CACAGAAGTTGTCACAGTGG+AGG | 0.658565 | 1.4:+16805483 | None:intergenic |
| AGTTTGATGAACCCAAAAGG+AGG | 0.661079 | 1.4:-16807740 | MS.gene98963:CDS |
| AAACCGTCGCATTAATCCAG+GGG | 0.661201 | 1.4:-16805245 | MS.gene98963:CDS |
| AAAACACGCGAAGATGAAGG+TGG | 0.663046 | 1.4:-16805902 | MS.gene98963:CDS |
| TGTGATGTCTGGAAAAGTAG+GGG | 0.672970 | 1.4:+16805727 | None:intergenic |
| ATGATGATGAGATGGCCGAA+TGG | 0.677784 | 1.4:-16804688 | MS.gene98963:CDS |
| CCTCACAGAAGTTGTCACAG+TGG | 0.690453 | 1.4:+16805480 | None:intergenic |
| GATGTTTGCAATGTAAAGAG+GGG | 0.691261 | 1.4:-16805273 | MS.gene98963:CDS |
| TAGCTCGTGTAATTTGAGGG+GGG | 0.711244 | 1.4:-16805945 | MS.gene98963:CDS |
| ATAGTAACAAAGAATCACCA+AGG | 0.722066 | 1.4:-16804970 | MS.gene98963:CDS |
| CCACTGTGACAACTTCTGTG+AGG | 0.726288 | 1.4:-16805480 | MS.gene98963:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAAGGTAAATAAAAAT+GGG | - | chr1.4:16805000-16805019 | MS.gene98963:CDS | 10.0% |
| !!! | TATTTTAAGGTAAATAAAAA+TGG | - | chr1.4:16804999-16805018 | MS.gene98963:CDS | 10.0% |
| !! | AAAAAAAGTTAATGTCAATT+TGG | - | chr1.4:16806212-16806231 | MS.gene98963:intron | 15.0% |
| !!! | TTTTGTTATTTTGTTTTACT+CGG | - | chr1.4:16807345-16807364 | MS.gene98963:intron | 15.0% |
| !! | ATAAGAGTTATTGTAACATT+TGG | - | chr1.4:16806358-16806377 | MS.gene98963:intron | 20.0% |
| !! | GTAAATTACAAGAAAAAAGA+AGG | - | chr1.4:16806111-16806130 | MS.gene98963:CDS | 20.0% |
| !! | TACAATGAATGATTACTATA+TGG | + | chr1.4:16806924-16806943 | None:intergenic | 20.0% |
| !!! | ATGCGTATTATTTTTACTTA+TGG | - | chr1.4:16806659-16806678 | MS.gene98963:intron | 20.0% |
| !!! | CATTCAAATATGTTTTTGTT+GGG | + | chr1.4:16804708-16804727 | None:intergenic | 20.0% |
| !!! | TTCTAAAATAACCAAAAATG+TGG | - | chr1.4:16805629-16805648 | MS.gene98963:intron | 20.0% |
| !!! | TTTACCATTTTATTTAGAGA+TGG | + | chr1.4:16806719-16806738 | None:intergenic | 20.0% |
| ! | AAAAATAAAGCAATTGAAGG+AGG | - | chr1.4:16807066-16807085 | MS.gene98963:intron | 25.0% |
| ! | AAAAATGTGGAGGAAAAAAA+AGG | - | chr1.4:16805642-16805661 | MS.gene98963:CDS | 25.0% |
| ! | AAAATGTGGAGGAAAAAAAA+GGG | - | chr1.4:16805643-16805662 | MS.gene98963:CDS | 25.0% |
| ! | AACTATTATACCATGATCAA+TGG | + | chr1.4:16806050-16806069 | None:intergenic | 25.0% |
| ! | AAGTAAATGACTGTAGAAAA+TGG | + | chr1.4:16806471-16806490 | None:intergenic | 25.0% |
| ! | AATGGAATGTTTGATCAAAA+AGG | - | chr1.4:16804870-16804889 | MS.gene98963:CDS | 25.0% |
| ! | AGAGAACTCAAATGATAATT+CGG | - | chr1.4:16807655-16807674 | MS.gene98963:CDS | 25.0% |
| ! | AGTTAATGTCAATTTGGAAA+TGG | - | chr1.4:16806218-16806237 | MS.gene98963:intron | 25.0% |
| ! | ATGGAAATAAAGTCATACTT+GGG | + | chr1.4:16806905-16806924 | None:intergenic | 25.0% |
| ! | ATGGAATGTTTGATCAAAAA+GGG | - | chr1.4:16804871-16804890 | MS.gene98963:CDS | 25.0% |
| ! | CAAACCATCTCTAAATAAAA+TGG | - | chr1.4:16806712-16806731 | MS.gene98963:intron | 25.0% |
| ! | CCAACAAAAACATATTTGAA+TGG | - | chr1.4:16804706-16804725 | MS.gene98963:CDS | 25.0% |
| ! | GGAAAAAATAAAGCAATTGA+AGG | - | chr1.4:16807063-16807082 | MS.gene98963:intron | 25.0% |
| ! | TAAAATAACCAAAAATGTGG+AGG | - | chr1.4:16805632-16805651 | MS.gene98963:intron | 25.0% |
| ! | TAACAATTAGCAAGTTCAAA+TGG | + | chr1.4:16805566-16805585 | None:intergenic | 25.0% |
| ! | TAATGACAATTTCTTGCTTA+TGG | - | chr1.4:16806184-16806203 | MS.gene98963:CDS | 25.0% |
| ! | TATGGAAATAAAGTCATACT+TGG | + | chr1.4:16806906-16806925 | None:intergenic | 25.0% |
| ! | TTGTATTCTTTGCAAAATTG+AGG | + | chr1.4:16807229-16807248 | None:intergenic | 25.0% |
| ! | TTTACCTTAAAATATGAGCA+TGG | + | chr1.4:16804993-16805012 | None:intergenic | 25.0% |
| !! | AATGTCTATAGTATTGAACA+TGG | + | chr1.4:16805900-16805919 | None:intergenic | 25.0% |
| !! | GGGTTCTTTTTATATGATTT+GGG | - | chr1.4:16805020-16805039 | MS.gene98963:CDS | 25.0% |
| !! | TATTTAGATTTTCCTATTGC+TGG | - | chr1.4:16807680-16807699 | MS.gene98963:CDS | 25.0% |
| !! | TGGGTTCTTTTTATATGATT+TGG | - | chr1.4:16805019-16805038 | MS.gene98963:CDS | 25.0% |
| !!! | CCATTCAAATATGTTTTTGT+TGG | + | chr1.4:16804709-16804728 | None:intergenic | 25.0% |
| !!! | GTCGTAAGTTATTGTTATTT+TGG | - | chr1.4:16807313-16807332 | MS.gene98963:intron | 25.0% |
| !!! | TTTGAACTTGCTAATTGTTA+AGG | - | chr1.4:16805566-16805585 | MS.gene98963:intron | 25.0% |
| !!! | TTTGCTTTGTTTTTCTGAAA+TGG | - | chr1.4:16805043-16805062 | MS.gene98963:CDS | 25.0% |
| !!! | TTTTTTTTCCTCCACATTTT+TGG | + | chr1.4:16805643-16805662 | None:intergenic | 25.0% |
| AAACTATACTAGACAGCTTA+TGG | + | chr1.4:16805272-16805291 | None:intergenic | 30.0% | |
| AAAGATGTTCAGTTAAAGCA+AGG | - | chr1.4:16806866-16806885 | MS.gene98963:intron | 30.0% | |
| AAATGTGGAGGAAAAAAAAG+GGG | - | chr1.4:16805644-16805663 | MS.gene98963:CDS | 30.0% | |
| AAGACTACTGAAAAAGATAG+TGG | - | chr1.4:16806751-16806770 | MS.gene98963:intron | 30.0% | |
| AAGATGTTTGCAATGTAAAG+AGG | - | chr1.4:16807247-16807266 | MS.gene98963:intron | 30.0% | |
| AATCTACACTAGACTAGATA+TGG | + | chr1.4:16806153-16806172 | None:intergenic | 30.0% | |
| ACAAACATGTGTGAATTGAT+TGG | - | chr1.4:16805797-16805816 | MS.gene98963:CDS | 30.0% | |
| ACATCAGTGAATTGAAGATA+AGG | + | chr1.4:16806543-16806562 | None:intergenic | 30.0% | |
| ACGAAACTATTTATCCAAAC+AGG | - | chr1.4:16805404-16805423 | MS.gene98963:intron | 30.0% | |
| AGATGTTACTCACAATCATA+AGG | - | chr1.4:16806086-16806105 | MS.gene98963:intron | 30.0% | |
| AGATGTTTGCAATGTAAAGA+GGG | - | chr1.4:16807248-16807267 | MS.gene98963:intron | 30.0% | |
| AGCTTACATAAGCACTTATA+TGG | - | chr1.4:16805356-16805375 | MS.gene98963:intron | 30.0% | |
| ATAGTAACAAAGAATCACCA+AGG | - | chr1.4:16807552-16807571 | MS.gene98963:CDS | 30.0% | |
| CATCAATTTCAGAAGAAACA+TGG | - | chr1.4:16807403-16807422 | MS.gene98963:intron | 30.0% | |
| CGAAACTATTTATCCAAACA+GGG | - | chr1.4:16805405-16805424 | MS.gene98963:intron | 30.0% | |
| CTGTTATATACTCTTATGAC+TGG | + | chr1.4:16806001-16806020 | None:intergenic | 30.0% | |
| GTCTAGTGTAGATTCATTTA+AGG | - | chr1.4:16806159-16806178 | MS.gene98963:CDS | 30.0% | |
| TGGAAATAAAGTCATACTTG+GGG | + | chr1.4:16806904-16806923 | None:intergenic | 30.0% | |
| TTACAAGAAAAAAGAAGGCT+TGG | - | chr1.4:16806116-16806135 | MS.gene98963:CDS | 30.0% | |
| ! | ACAAGCAGTTCTAATAAGAT+TGG | + | chr1.4:16804953-16804972 | None:intergenic | 30.0% |
| ! | AGAACTGCTTGTCTTAATTT+TGG | - | chr1.4:16804961-16804980 | MS.gene98963:CDS | 30.0% |
| ! | GACATCGTTTCAAAATGTTT+TGG | + | chr1.4:16804669-16804688 | None:intergenic | 30.0% |
| ! | GATTCTTTTACATCCAAATG+AGG | + | chr1.4:16804931-16804950 | None:intergenic | 30.0% |
| !! | TGATATTTCTAGCAAAGTTG+TGG | + | chr1.4:16807015-16807034 | None:intergenic | 30.0% |
| !!! | CTTTGTTTTTCTGAAATGGT+TGG | - | chr1.4:16805047-16805066 | MS.gene98963:CDS | 30.0% |
| !!! | GGAATAAACTTTTTAAGACG+CGG | + | chr1.4:16805980-16805999 | None:intergenic | 30.0% |
| !!! | TGGTTTTGAATGTTGTGTTT+GGG | - | chr1.4:16805067-16805086 | MS.gene98963:CDS | 30.0% |
| !!! | TTGGTTTTGAATGTTGTGTT+TGG | - | chr1.4:16805066-16805085 | MS.gene98963:CDS | 30.0% |
| AAGTCGAGATTTGTAGAAGA+AGG | - | chr1.4:16807611-16807630 | MS.gene98963:CDS | 35.0% | |
| AATGTTGTGTTTGGGTATGT+AGG | - | chr1.4:16805075-16805094 | MS.gene98963:CDS | 35.0% | |
| AATTCACTGATGTTTCAACC+AGG | - | chr1.4:16806550-16806569 | MS.gene98963:intron | 35.0% | |
| AGAAGAGCAAAACTCATCAT+CGG | + | chr1.4:16807798-16807817 | None:intergenic | 35.0% | |
| ATGATCAATGGCAGATAGAA+AGG | + | chr1.4:16806038-16806057 | None:intergenic | 35.0% | |
| ATGTGATCATAGAAGACCTA+AGG | - | chr1.4:16807436-16807455 | MS.gene98963:intron | 35.0% | |
| CATCTGAATCCTCTAGATAA+GGG | - | chr1.4:16806839-16806858 | MS.gene98963:intron | 35.0% | |
| CCAAATGAGGATTCTCAAAT+GGG | + | chr1.4:16804918-16804937 | None:intergenic | 35.0% | |
| GATGTTTGCAATGTAAAGAG+GGG | - | chr1.4:16807249-16807268 | MS.gene98963:intron | 35.0% | |
| GTCTTCTATGATCACATTTC+AGG | + | chr1.4:16807433-16807452 | None:intergenic | 35.0% | |
| TCAAATGCAGAAAACTGCAA+AGG | - | chr1.4:16805940-16805959 | MS.gene98963:CDS | 35.0% | |
| TCATCTGAATCCTCTAGATA+AGG | - | chr1.4:16806838-16806857 | MS.gene98963:intron | 35.0% | |
| TCCAAATGAGGATTCTCAAA+TGG | + | chr1.4:16804919-16804938 | None:intergenic | 35.0% | |
| TCCAAGCTTAGATAGAAAAG+TGG | - | chr1.4:16806384-16806403 | MS.gene98963:intron | 35.0% | |
| TCTAAACTTAAAGCCCTGTT+TGG | + | chr1.4:16805421-16805440 | None:intergenic | 35.0% | |
| TGGATGAGAAATCTGAAAAG+CGG | + | chr1.4:16804830-16804849 | None:intergenic | 35.0% | |
| TTATATACTTCTGCCCTTTG+TGG | + | chr1.4:16807728-16807747 | None:intergenic | 35.0% | |
| TTGAACCCACAGATCTATAA+GGG | + | chr1.4:16805523-16805542 | None:intergenic | 35.0% | |
| TTGGAAAGGGTAAGAATTCA+AGG | - | chr1.4:16807858-16807877 | MS.gene98963:CDS | 35.0% | |
| TTTCTATCTGCCATTGATCA+TGG | - | chr1.4:16806037-16806056 | MS.gene98963:intron | 35.0% | |
| TTTGAACCCACAGATCTATA+AGG | + | chr1.4:16805524-16805543 | None:intergenic | 35.0% | |
| ! | ACTTGCTAATTGTTAAGGCT+GGG | - | chr1.4:16805571-16805590 | MS.gene98963:intron | 35.0% |
| ! | AGTCACTTACCTTTGAAGAA+GGG | - | chr1.4:16807094-16807113 | MS.gene98963:intron | 35.0% |
| ! | CTTTTCAGATTTCTCATCCA+TGG | - | chr1.4:16804830-16804849 | MS.gene98963:CDS | 35.0% |
| ! | GAGACCATGCTCATATTTTA+AGG | - | chr1.4:16804986-16805005 | MS.gene98963:CDS | 35.0% |
| ! | TAGTCACTTACCTTTGAAGA+AGG | - | chr1.4:16807093-16807112 | MS.gene98963:intron | 35.0% |
| ! | TGTGTGAATTGATTGGTGAT+AGG | - | chr1.4:16805804-16805823 | MS.gene98963:CDS | 35.0% |
| ! | TTAGATTTTCCTATTGCTGG+AGG | - | chr1.4:16807683-16807702 | MS.gene98963:CDS | 35.0% |
| ! | TTTGAAGCATTTGACACCTT+AGG | + | chr1.4:16807455-16807474 | None:intergenic | 35.0% |
| !! | AACTTGCTAATTGTTAAGGC+TGG | - | chr1.4:16805570-16805589 | MS.gene98963:intron | 35.0% |
| !! | ACCACTTTTCTATCTAAGCT+TGG | + | chr1.4:16806388-16806407 | None:intergenic | 35.0% |
| !! | ACGTAACTTATTTCTGAACG+CGG | - | chr1.4:16805597-16805616 | MS.gene98963:intron | 35.0% |
| !! | ATCTTTTCGAGACAAAAACC+TGG | + | chr1.4:16806338-16806357 | None:intergenic | 35.0% |
| !! | GTGTGACATTGATAGTGTAA+TGG | - | chr1.4:16805120-16805139 | MS.gene98963:CDS | 35.0% |
| !! | TGTTTTACTCGGTACTGAAA+CGG | - | chr1.4:16807356-16807375 | MS.gene98963:intron | 35.0% |
| !!! | AAACTCGTTTTGGTTTGGAT+TGG | + | chr1.4:16804767-16804786 | None:intergenic | 35.0% |
| !!! | TCATCAAACTCGTTTTGGTT+TGG | + | chr1.4:16804772-16804791 | None:intergenic | 35.0% |
| !!! | TCTTTTTTGCCCTTATCTAG+AGG | + | chr1.4:16806851-16806870 | None:intergenic | 35.0% |
| !!! | TGTTGTTGATTCCTCCTTTT+GGG | + | chr1.4:16804796-16804815 | None:intergenic | 35.0% |
| !!! | TTGTTGTTGATTCCTCCTTT+TGG | + | chr1.4:16804797-16804816 | None:intergenic | 35.0% |
| ACACTATGAACATGTCCAAG+CGG | + | chr1.4:16805855-16805874 | None:intergenic | 40.0% | |
| ACGAGTTTGATGAACCCAAA+AGG | - | chr1.4:16804779-16804798 | MS.gene98963:CDS | 40.0% | |
| AGTTTGATGAACCCAAAAGG+AGG | - | chr1.4:16804782-16804801 | MS.gene98963:CDS | 40.0% | |
| ATAGATCTGTGGGTTCAAAG+AGG | - | chr1.4:16805525-16805544 | MS.gene98963:intron | 40.0% | |
| ATCTCATCATCATCGGTACT+CGG | + | chr1.4:16807827-16807846 | None:intergenic | 40.0% | |
| CCCATTTGAGAATCCTCATT+TGG | - | chr1.4:16804915-16804934 | MS.gene98963:CDS | 40.0% | |
| CTGTGATGTCTGGAAAAGTA+GGG | + | chr1.4:16806799-16806818 | None:intergenic | 40.0% | |
| CTTACCCTTTCCAAACCATT+CGG | + | chr1.4:16807852-16807871 | None:intergenic | 40.0% | |
| GAAAACTGCAAAGGATTTGG+TGG | - | chr1.4:16805949-16805968 | MS.gene98963:CDS | 40.0% | |
| GAAACGGAAACTGTTTGTGT+AGG | - | chr1.4:16807372-16807391 | MS.gene98963:intron | 40.0% | |
| GATAGAAAAGTGGTCAACTC+AGG | - | chr1.4:16806394-16806413 | MS.gene98963:intron | 40.0% | |
| GCAGAAAACTGCAAAGGATT+TGG | - | chr1.4:16805946-16805965 | MS.gene98963:CDS | 40.0% | |
| GGATGAGAAATCTGAAAAGC+GGG | + | chr1.4:16804829-16804848 | None:intergenic | 40.0% | |
| GTGCGTATTAGAAAGGATGT+GGG | - | chr1.4:16805692-16805711 | MS.gene98963:CDS | 40.0% | |
| GTGTAGCTCGTGTAATTTGA+GGG | - | chr1.4:16806574-16806593 | MS.gene98963:intron | 40.0% | |
| TAGATCTGTGGGTTCAAAGA+GGG | - | chr1.4:16805526-16805545 | MS.gene98963:intron | 40.0% | |
| TATCCACTGAACCGATGATT+GGG | + | chr1.4:16806691-16806710 | None:intergenic | 40.0% | |
| TATGGACTTGACCCAATCAT+CGG | - | chr1.4:16806677-16806696 | MS.gene98963:intron | 40.0% | |
| TCCATTAACTCTACCCATTC+AGG | + | chr1.4:16804856-16804875 | None:intergenic | 40.0% | |
| TCCTTTCTAATACGCACGTA+CGG | + | chr1.4:16805689-16805708 | None:intergenic | 40.0% | |
| TCTGTGATGTCTGGAAAAGT+AGG | + | chr1.4:16806800-16806819 | None:intergenic | 40.0% | |
| TGAACCCACAGATCTATAAG+GGG | + | chr1.4:16805522-16805541 | None:intergenic | 40.0% | |
| TGTAGCTCGTGTAATTTGAG+GGG | - | chr1.4:16806575-16806594 | MS.gene98963:intron | 40.0% | |
| TGTGATGTCTGGAAAAGTAG+GGG | + | chr1.4:16806798-16806817 | None:intergenic | 40.0% | |
| TGTGTAGCTCGTGTAATTTG+AGG | - | chr1.4:16806573-16806592 | MS.gene98963:intron | 40.0% | |
| TTATCCACTGAACCGATGAT+TGG | + | chr1.4:16806692-16806711 | None:intergenic | 40.0% | |
| TTCAGTTAAAGCAAGGCGAT+TGG | - | chr1.4:16806873-16806892 | MS.gene98963:intron | 40.0% | |
| TTGTCCCCTTATAGATCTGT+GGG | - | chr1.4:16805515-16805534 | MS.gene98963:CDS | 40.0% | |
| TTTGTCCCCTTATAGATCTG+TGG | - | chr1.4:16805514-16805533 | MS.gene98963:CDS | 40.0% | |
| ! | TACTTTTCCAGACATCACAG+AGG | - | chr1.4:16806799-16806818 | MS.gene98963:intron | 40.0% |
| ! | TGGGTTCATCAAACTCGTTT+TGG | + | chr1.4:16804777-16804796 | None:intergenic | 40.0% |
| !! | AAAGGGTCATTTTCATGCAG+AGG | - | chr1.4:16804888-16804907 | MS.gene98963:CDS | 40.0% |
| !! | AAGGGTCATTTTCATGCAGA+GGG | - | chr1.4:16804889-16804908 | MS.gene98963:CDS | 40.0% |
| !! | CGTAACTTATTTCTGAACGC+GGG | - | chr1.4:16805598-16805617 | MS.gene98963:intron | 40.0% |
| !! | GTAACTTATTTCTGAACGCG+GGG | - | chr1.4:16805599-16805618 | MS.gene98963:intron | 40.0% |
| AAAACACGCGAAGATGAAGG+TGG | - | chr1.4:16806620-16806639 | MS.gene98963:intron | 45.0% | |
| AAACCGTCGCATTAATCCAG+GGG | - | chr1.4:16807277-16807296 | MS.gene98963:intron | 45.0% | |
| AACCGATATCCTGCAAAAGC+AGG | + | chr1.4:16807530-16807549 | None:intergenic | 45.0% | |
| AATTACACGAGCTACACACC+TGG | + | chr1.4:16806571-16806590 | None:intergenic | 45.0% | |
| ACCTGGCAAGAAAAGTCAGT+TGG | + | chr1.4:16806321-16806340 | None:intergenic | 45.0% | |
| AGTCGCCAAATCAGTCCAAA+AGG | - | chr1.4:16807753-16807772 | MS.gene98963:CDS | 45.0% | |
| ATCCAGTCTCCCTTCTTCAA+AGG | + | chr1.4:16807106-16807125 | None:intergenic | 45.0% | |
| CAAACCGTCGCATTAATCCA+GGG | - | chr1.4:16807276-16807295 | MS.gene98963:intron | 45.0% | |
| CCTTTCTAATACGCACGTAC+GGG | + | chr1.4:16805688-16805707 | None:intergenic | 45.0% | |
| CGTGCGTATTAGAAAGGATG+TGG | - | chr1.4:16805691-16805710 | MS.gene98963:CDS | 45.0% | |
| CTCTTTCTTTCTGACGTCCT+TGG | + | chr1.4:16807572-16807591 | None:intergenic | 45.0% | |
| GATTATCTACACCATCCGCT+TGG | - | chr1.4:16805837-16805856 | MS.gene98963:CDS | 45.0% | |
| GCCTGAATGGGTAGAGTTAA+TGG | - | chr1.4:16804852-16804871 | MS.gene98963:CDS | 45.0% | |
| GGATTAATGCGACGGTTTGA+AGG | + | chr1.4:16807275-16807294 | None:intergenic | 45.0% | |
| GTAGCTCGTGTAATTTGAGG+GGG | - | chr1.4:16806576-16806595 | MS.gene98963:intron | 45.0% | |
| GTGAAAACACGCGAAGATGA+AGG | - | chr1.4:16806617-16806636 | MS.gene98963:intron | 45.0% | |
| TAGCATGTCTGAGCCACAAA+GGG | - | chr1.4:16807712-16807731 | MS.gene98963:CDS | 45.0% | |
| TAGCTCGTGTAATTTGAGGG+GGG | - | chr1.4:16806577-16806596 | MS.gene98963:intron | 45.0% | |
| TATGAACATGTCCAAGCGGA+TGG | + | chr1.4:16805851-16805870 | None:intergenic | 45.0% | |
| TCAAACCGTCGCATTAATCC+AGG | - | chr1.4:16807275-16807294 | MS.gene98963:intron | 45.0% | |
| TGTGTTTGGGTATGTAGGCA+AGG | - | chr1.4:16805080-16805099 | MS.gene98963:CDS | 45.0% | |
| TTCGGCCATCTCATCATCAT+CGG | + | chr1.4:16807834-16807853 | None:intergenic | 45.0% | |
| TTCTCATCCATGGCCTGAAT+GGG | - | chr1.4:16804840-16804859 | MS.gene98963:CDS | 45.0% | |
| TTTCTCATCCATGGCCTGAA+TGG | - | chr1.4:16804839-16804858 | MS.gene98963:CDS | 45.0% | |
| ! | ACTTTGCCAAGCATGCCTTT+TGG | + | chr1.4:16807771-16807790 | None:intergenic | 45.0% |
| ! | ATCAGTCCAAAAGGCATGCT+TGG | - | chr1.4:16807762-16807781 | MS.gene98963:CDS | 45.0% |
| ! | ATGATGATGAGATGGCCGAA+TGG | - | chr1.4:16807834-16807853 | MS.gene98963:CDS | 45.0% |
| ! | ATGGCCGAATGGTTTGGAAA+GGG | - | chr1.4:16807845-16807864 | MS.gene98963:CDS | 45.0% |
| ! | GCATGCCTTTTGGACTGATT+TGG | + | chr1.4:16807761-16807780 | None:intergenic | 45.0% |
| ! | TACCTTTGAAGAAGGGAGAC+TGG | - | chr1.4:16807101-16807120 | MS.gene98963:intron | 45.0% |
| !! | AAAAGCAGACCTGCTTTTGC+AGG | - | chr1.4:16807518-16807537 | MS.gene98963:intron | 45.0% |
| !! | AGCATATGCAGGCATTGATG+AGG | - | chr1.4:16806429-16806448 | MS.gene98963:intron | 45.0% |
| !! | CTAGTCTTACCTCCAGCAAT+AGG | + | chr1.4:16807695-16807714 | None:intergenic | 45.0% |
| !! | GACCTGCTTTTGCAGGATAT+CGG | - | chr1.4:16807525-16807544 | MS.gene98963:intron | 45.0% |
| !! | GAGTACCGATGATGATGAGA+TGG | - | chr1.4:16807826-16807845 | MS.gene98963:CDS | 45.0% |
| !! | GCATATGCAGGCATTGATGA+GGG | - | chr1.4:16806430-16806449 | MS.gene98963:intron | 45.0% |
| !! | GGCATTGATGAGGGAAATGT+TGG | - | chr1.4:16806439-16806458 | MS.gene98963:intron | 45.0% |
| !! | TCCAACTGACTTTTCTTGCC+AGG | - | chr1.4:16806317-16806336 | MS.gene98963:intron | 45.0% |
| !!! | CAGGTCTGCTTTTTTCACAG+TGG | + | chr1.4:16807511-16807530 | None:intergenic | 45.0% |
| AACTCTACCCATTCAGGCCA+TGG | + | chr1.4:16804850-16804869 | None:intergenic | 50.0% | |
| ACAGCAACCTCTGTGATGTC+TGG | + | chr1.4:16806809-16806828 | None:intergenic | 50.0% | |
| ACTCCCCTGGATTAATGCGA+CGG | + | chr1.4:16807283-16807302 | None:intergenic | 50.0% | |
| ATTTGAGGGGGGACTGTGAA+CGG | - | chr1.4:16806588-16806607 | MS.gene98963:intron | 50.0% | |
| CACAGAAGTTGTCACAGTGG+AGG | + | chr1.4:16807042-16807061 | None:intergenic | 50.0% | |
| CCACTGTGACAACTTCTGTG+AGG | - | chr1.4:16807042-16807061 | MS.gene98963:intron | 50.0% | |
| CCCGTACGTGCGTATTAGAA+AGG | - | chr1.4:16805685-16805704 | MS.gene98963:CDS | 50.0% | |
| CCTCACAGAAGTTGTCACAG+TGG | + | chr1.4:16807045-16807064 | None:intergenic | 50.0% | |
| CTAGCATGTCTGAGCCACAA+AGG | - | chr1.4:16807711-16807730 | MS.gene98963:CDS | 50.0% | |
| GATGAGATGGCCGAATGGTT+TGG | - | chr1.4:16807839-16807858 | MS.gene98963:CDS | 50.0% | |
| GGACGTCAGAAAGAAAGAGC+AGG | - | chr1.4:16807573-16807592 | MS.gene98963:CDS | 50.0% | |
| TCGCATTAATCCAGGGGAGT+GGG | - | chr1.4:16807283-16807302 | MS.gene98963:intron | 50.0% | |
| ! | AAGCGTCTGAGAGCATATGC+AGG | - | chr1.4:16806418-16806437 | MS.gene98963:intron | 50.0% |
| ! | GATGGCCGAATGGTTTGGAA+AGG | - | chr1.4:16807844-16807863 | MS.gene98963:CDS | 50.0% |
| !! | TGACCCAATCATCGGTTCAG+TGG | - | chr1.4:16806685-16806704 | MS.gene98963:intron | 50.0% |
| GTCGCATTAATCCAGGGGAG+TGG | - | chr1.4:16807282-16807301 | MS.gene98963:intron | 55.0% | |
| TTTGAGGGGGGACTGTGAAC+GGG | - | chr1.4:16806589-16806608 | MS.gene98963:intron | 55.0% | |
| GACTCGCATTCCCACTCCCC+TGG | + | chr1.4:16807296-16807315 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 16804661 | 16807883 | 16804661 | ID=MS.gene98963 |
| chr1.4 | mRNA | 16804661 | 16807883 | 16804661 | ID=MS.gene98963.t1;Parent=MS.gene98963 |
| chr1.4 | exon | 16807537 | 16807883 | 16807537 | ID=MS.gene98963.t1.exon1;Parent=MS.gene98963.t1 |
| chr1.4 | CDS | 16807537 | 16807883 | 16807537 | ID=cds.MS.gene98963.t1;Parent=MS.gene98963.t1 |
| chr1.4 | exon | 16806088 | 16806205 | 16806088 | ID=MS.gene98963.t1.exon2;Parent=MS.gene98963.t1 |
| chr1.4 | CDS | 16806088 | 16806205 | 16806088 | ID=cds.MS.gene98963.t1;Parent=MS.gene98963.t1 |
| chr1.4 | exon | 16805638 | 16805972 | 16805638 | ID=MS.gene98963.t1.exon3;Parent=MS.gene98963.t1 |
| chr1.4 | CDS | 16805638 | 16805972 | 16805638 | ID=cds.MS.gene98963.t1;Parent=MS.gene98963.t1 |
| chr1.4 | exon | 16805410 | 16805541 | 16805410 | ID=MS.gene98963.t1.exon4;Parent=MS.gene98963.t1 |
| chr1.4 | CDS | 16805410 | 16805541 | 16805410 | ID=cds.MS.gene98963.t1;Parent=MS.gene98963.t1 |
| chr1.4 | exon | 16805229 | 16805327 | 16805229 | ID=MS.gene98963.t1.exon5;Parent=MS.gene98963.t1 |
| chr1.4 | CDS | 16805229 | 16805327 | 16805229 | ID=cds.MS.gene98963.t1;Parent=MS.gene98963.t1 |
| chr1.4 | exon | 16804661 | 16805150 | 16804661 | ID=MS.gene98963.t1.exon6;Parent=MS.gene98963.t1 |
| chr1.4 | CDS | 16804661 | 16805150 | 16804661 | ID=cds.MS.gene98963.t1;Parent=MS.gene98963.t1 |
| Gene Sequence |
| Protein sequence |
