AlfalfaGEDB | MS.gene99096

M. sativa cultivar XinJiangDaYe / MS.gene99096

KEGG: -
GO: -
PFAM: PF03168.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99096.t1	XP_004490745.1	75.7	259	56	3	1	258	1	253	1.00E-98	369.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99096.t1	Q8LD98	46.8	265	121	3	1	258	1	252	2.3e-54	213.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99096.t1	A0A1S2XMW5	75.7	259	56	3	1	258	1	253	7.6e-99	369.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051959	MS.gene99096	0.817257	3.62E-52	-1.69E-46
MS.gene051960	MS.gene99096	0.816572	5.16E-52	-1.69E-46
MS.gene052053	MS.gene99096	0.844487	7.33E-59	-1.69E-46
MS.gene055549	MS.gene99096	0.822365	2.46E-53	-1.69E-46
MS.gene055550	MS.gene99096	0.817352	3.45E-52	-1.69E-46
MS.gene055551	MS.gene99096	0.806235	9.08E-50	-1.69E-46
MS.gene056365	MS.gene99096	0.808643	2.80E-50	-1.69E-46
MS.gene056530	MS.gene99096	0.805623	1.22E-49	-1.69E-46
MS.gene058628	MS.gene99096	0.832373	9.81E-56	-1.69E-46
MS.gene058629	MS.gene99096	0.811409	7.10E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99096.t1	MTR_5g076170	94.677	263	9	1	1	258	1	263	0.0	498
MS.gene99096.t1	MTR_3g063310	62.791	258	89	3	1	258	2	252	5.47e-100	292
MS.gene99096.t1	MTR_1g077560	48.462	260	122	7	1	258	1	250	1.22e-68	212
MS.gene99096.t1	MTR_5g087760	38.424	203	118	3	59	258	56	254	9.31e-43	146
MS.gene99096.t1	MTR_3g078800	37.566	189	109	4	74	258	69	252	1.69e-34	125
MS.gene99096.t1	MTR_2g012550	35.751	193	119	3	69	258	74	264	3.74e-32	119
MS.gene99096.t1	MTR_2g011350	32.099	162	103	3	86	244	35	192	2.13e-21	89.4
MS.gene99096.t1	MTR_3g078820	32.450	151	95	3	93	240	44	190	3.05e-20	86.3
MS.gene99096.t1	MTR_3g074150	26.840	231	146	8	19	243	19	232	4.70e-19	84.0
MS.gene99096.t1	MTR_7g106000	31.771	192	117	6	54	236	20	206	5.88e-19	83.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99096.t1	AT1G65690	52.075	265	107	3	1	258	1	252	1.12e-90	268
MS.gene99096.t1	AT5G36970	52.107	261	109	5	1	258	1	248	1.64e-87	260
MS.gene99096.t1	AT1G54540	44.961	258	123	3	1	258	1	239	4.68e-63	197
MS.gene99096.t1	AT2G27080	37.500	192	116	3	62	252	65	253	1.48e-39	138
MS.gene99096.t1	AT2G27080	37.500	192	116	3	62	252	65	253	1.48e-39	138
MS.gene99096.t1	AT5G21130	28.649	185	132	0	62	246	86	270	1.74e-26	104
MS.gene99096.t1	AT3G11650	32.967	182	118	3	65	244	45	224	6.49e-25	99.4
MS.gene99096.t1	AT5G06320	35.542	166	100	5	75	236	48	210	3.04e-24	97.4
MS.gene99096.t1	AT2G35980	35.260	173	103	5	65	232	31	199	2.02e-22	92.4
MS.gene99096.t1	AT2G35460	31.325	166	107	4	75	236	54	216	5.90e-21	89.0

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Find 44 sgRNAs with CRISPR-Local

Find 53 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGAATTGACTATAG+AGG	0.508164	5.2:+64126600	MS.gene99096:CDS
AACCTGTGAGGATTAAGCTT+GGG	0.519369	5.2:+64126823	MS.gene99096:CDS
ACAGACACAAAATTATGTGA+AGG	0.595482	5.2:+64126648	MS.gene99096:CDS
ACCAAAGATTCCAAAATACT+CGG	0.589951	5.2:+64126482	MS.gene99096:CDS
AGAAATCCAAACAAGAAAAT+TGG	0.264628	5.2:+64126585	MS.gene99096:CDS
AGCTTCCCAAAATTAATTTC+AGG	0.315887	5.2:+64126853	MS.gene99096:CDS
AGTTCATCGACCGAGTATTT+TGG	0.182422	5.2:-64126492	None:intergenic
ATAGCACTTGGCATAACAAT+TGG	0.433295	5.2:+64126438	MS.gene99096:CDS
ATTGGAATTGACTATAGAGG+TGG	0.594568	5.2:+64126603	MS.gene99096:CDS
CAACCTGTGAGGATTAAGCT+TGG	0.558142	5.2:+64126822	MS.gene99096:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAGACACAAAATTATGTGA+AGG	+	chr5.2:64126648-64126667	MS.gene99096:CDS	30.0%
ACCAAAGATTCCAAAATACT+CGG	+	chr5.2:64126482-64126501	MS.gene99096:CDS	30.0%
AGCTTCCCAAAATTAATTTC+AGG	+	chr5.2:64126853-64126872	MS.gene99096:CDS	30.0%
CAGACACAAAATTATGTGAA+GGG	+	chr5.2:64126649-64126668	MS.gene99096:CDS	30.0%
CCAAAATTAATTTCAGGGTT+AGG	+	chr5.2:64126859-64126878	MS.gene99096:CDS	30.0%
GAATCTTTGGTCTAAAAACA+AGG	-	chr5.2:64126473-64126492	None:intergenic	30.0%
GCTTCCCAAAATTAATTTCA+GGG	+	chr5.2:64126854-64126873	MS.gene99096:CDS	30.0%
TAGTGTTCCTCTTAAATTGA+AGG	+	chr5.2:64126794-64126813	MS.gene99096:CDS	30.0%
TCTTTCAAACAACAACAGTT+TGG	+	chr5.2:64126533-64126552	MS.gene99096:CDS	30.0%
TGTTTCACCTTCAATTTAAG+AGG	-	chr5.2:64126804-64126823	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	64126189	64126965	64126189	ID=MS.gene99096
chr5.2	mRNA	64126189	64126965	64126189	ID=MS.gene99096.t1;Parent=MS.gene99096
chr5.2	exon	64126189	64126965	64126189	ID=MS.gene99096.t1.exon1;Parent=MS.gene99096.t1
chr5.2	CDS	64126189	64126965	64126189	ID=cds.MS.gene99096.t1;Parent=MS.gene99096.t1

Gene Sequence

>MS.gene99096

ATGGCAGATAATCAAAGAATTCATCCACTTCATGATGTTGAAGCACCTCAACAACAACCTTCAGCACCTTTAGTACCAAGAAACATGTCAAAATCTGATGATCCTGAACAACAACATGGTCCTCCTCCTTTTCCTAGTACACAACAAACTTTGCCTATTCCTATTAATCAATCAAAACCACCAAAGAAAAGAAGAAGCTGTTGCTGCAAATTCTTCTGTTGGATTTTCAGCATACTAATATTTTTGATCATAGCACTTGGCATAACAATTGGAATACTCTTCCTTGTTTTTAGACCAAAGATTCCAAAATACTCGGTCGATGAACTACGTGTCACGCAATTCGATCTTTCAAACAACAACAGTTTGGCAGTCACATTCAACTTAACATTCACTGCAAGAAATCCAAACAAGAAAATTGGAATTGACTATAGAGGTGGAAGTCACATAAGTGCTTGGTATACAGACACAAAATTATGTGAAGGGTCATTACCTAAATTCTATCAAGGTCACAAAAATGTTACTGTTCTTAGTATACCTTTGACAGGACAAACACAGAATGCAACAGGTTTGAGAGATTCATTGCAGCAACAAGTTCAATCAGAGGGTAGTGTTCCTCTTAAATTGAAGGTGAAACAACCTGTGAGGATTAAGCTTGGGAAATTGAAGCTTCCCAAAATTAATTTCAGGGTTAGGTGTACGATTGTGGTGGATAGTCTTAGTGCTAATAATTCTATTAGAATTAGGAGCAGTAGTTGTAAATTTAGGTTTAGGCTTTGA

Protein sequence

>MS.gene99096.t1

MADNQRIHPLHDVEAPQQQPSAPLVPRNMSKSDDPEQQHGPPPFPSTQQTLPIPINQSKPPKKRRSCCCKFFCWIFSILIFLIIALGITIGILFLVFRPKIPKYSVDELRVTQFDLSNNNSLAVTFNLTFTARNPNKKIGIDYRGGSHISAWYTDTKLCEGSLPKFYQGHKNVTVLSIPLTGQTQNATGLRDSLQQQVQSEGSVPLKLKVKQPVRIKLGKLKLPKINFRVRCTIVVDSLSANNSIRIRSSSCKFRFRL