AlfalfaGEDB | MsG0180000808.01

M. sativa cultivar ZhongmuNo.1 / MsG0180000808.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000808.01.T01	PNY08717.1	65.766	111	31	3	36	142	22	129	1.47E-36	144

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000808.01.T01	A0A2K3P0A5	65.766	111	31	3	36	142	22	129	7.02e-37	144

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000808.01	MsG0280006299.01	0.802464	5.542613e-49	2.716826e-46
MsG0180000808.01	MsG0280006469.01	0.810537	1.097273e-50	6.631508e-48
MsG0180000808.01	MsG0280007955.01	0.803436	3.488990e-49	1.753216e-46
MsG0180000808.01	MsG0280009794.01	0.820025	8.526782e-53	6.670673e-50
MsG0180000808.01	MsG0280010015.01	0.801463	8.899997e-49	4.252899e-46
MsG0180000808.01	MsG0280010489.01	0.808488	3.022126e-50	1.730247e-47
MsG0180000808.01	MsG0380013475.01	0.802765	4.804167e-49	2.373088e-46
MsG0180000808.01	MsG0380015332.01	0.805080	1.586147e-49	8.314874e-47
MsG0180000808.01	MsG0380015555.01	0.804877	1.749411e-49	9.123717e-47
MsG0180000808.01	MsG0380015631.01	0.805477	1.309996e-49	6.937493e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000808.01.T01	MTR_1g008060	78.070	114	16	2	34	142	98	207	8.79e-33	122
MsG0180000808.01.T01	MTR_1g008060	78.070	114	16	2	34	142	98	207	1.10e-32	121

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 43 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGTGGGAGGTTTGAGCAA+GGG	0.621572	1:-11450023	MsG0180000808.01.T01:CDS
AATGGGTTGATTGGTGAAGG+AGG	0.587408	1:-11449787	MsG0180000808.01.T01:CDS
AATGGTGTTGATGGTGTTTG+TGG	0.491837	1:-11449844	MsG0180000808.01.T01:CDS
AATTTGTAGGTGGTTTGTTG+AGG	0.579317	1:-11449963	MsG0180000808.01.T01:CDS
AGGTCAGCAATGGGTGGTGT+AGG	0.483730	1:-11449919	MsG0180000808.01.T01:CDS
AGTGAATGGTGGTGTTATGC+TGG	0.474174	1:-11450093	MsG0180000808.01.T01:CDS
ATGGGTGGTGTAGGTGTATT+TGG	0.278093	1:-11449910	MsG0180000808.01.T01:CDS
ATTAATGGGTTGATTGGTGA+AGG	0.569110	1:-11449790	MsG0180000808.01.T01:CDS
ATTGGTGAAGGAGGTGGTTT+TGG	0.209867	1:-11449778	MsG0180000808.01.T01:CDS
CAAGGTGGGAGGTTTGAGCA+AGG	0.617632	1:-11450024	MsG0180000808.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATCCGCCTGAAATTTA+AGG	+	Chr1:11449896-11449915	None:intergenic	30.0%
AAATACCGGACTAAGTTAAA+AGG	-	Chr1:11449939-11449958	MsG0180000808.01.T01:CDS	30.0%
AAGAAGTTATGAAGAGAGAA+GGG	+	Chr1:11451173-11451192	None:intergenic	30.0%
AAGAGAAAAACATGTATGTG+TGG	-	Chr1:11450474-11450493	MsG0180000808.01.T01:intron	30.0%
AAGCTATGGTTTATTGATAC+GGG	+	Chr1:11450684-11450703	None:intergenic	30.0%
AAGTATATGGTACTGTGAAA+AGG	+	Chr1:11451017-11451036	None:intergenic	30.0%
AGGGTTTAACCTTAAATTTC+AGG	-	Chr1:11449884-11449903	MsG0180000808.01.T01:CDS	30.0%
CAATGAACTTACCTCATTTA+AGG	+	Chr1:11450281-11450300	None:intergenic	30.0%
CACCAATCTGAATAAAATGT+AGG	-	Chr1:11449864-11449883	MsG0180000808.01.T01:CDS	30.0%
CTAAGTTAAAAGGTCATTCA+AGG	-	Chr1:11449949-11449968	MsG0180000808.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	11449768	11451939	11449768	ID=MsG0180000808.01;Name=MsG0180000808.01
Chr1	mRNA	11449768	11451939	11449768	ID=MsG0180000808.01.T01;Parent=MsG0180000808.01;Name=MsG0180000808.01.T01;_AED=0.58;_eAED=0.61;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|142
Chr1	exon	11451857	11451939	11451857	ID=MsG0180000808.01.T01:exon:766;Parent=MsG0180000808.01.T01
Chr1	exon	11449768	11450113	11449768	ID=MsG0180000808.01.T01:exon:767;Parent=MsG0180000808.01.T01
Chr1	CDS	11451857	11451939	11451857	ID=MsG0180000808.01.T01:cds;Parent=MsG0180000808.01.T01
Chr1	CDS	11449768	11450113	11449768	ID=MsG0180000808.01.T01:cds;Parent=MsG0180000808.01.T01

Gene Sequence

>MsG0180000808.01.T01

ATGATTTTAGATTTTTCATTGATGAATATTGCACTGTTCGTGTATCTTTATGTTCCACTAGAGCTGTCAAAATGGGCTAGCACTGAATGGTGGTGTTATGCTGGTATTGGTTGTGAAAGTTTTGGTCTTTGGCAACAAGGGGGTGGTCAACAAGGTGGGAGGTTTGAGCAAGGGAGTGGGAATTTAGGTCAATTTTTGGGTGATGGAGTTGAATTTGTAGGTGGTTTGTTGAGGATAGGAATAGGGTTGTTGGTTAGGTCAGCAATGGGTGGTGTAGGTGTATTTGGAAATGGTGGTGGTGTGTCTGGTGTTTGTAAAGATGATCATGGAAATGGTGTTGATGGTGTTTGTGGAAATGATTCACTTGGTTTTGGTTCTGATGGAATTAATGGGTTGATTGGTGAAGGAGGTGGTTTTGGGAATTTATGA

Protein sequence

>MsG0180000808.01.T01

MILDFSLMNIALFVYLYVPLELSKWASTEWWCYAGIGCESFGLWQQGGGQQGGRFEQGSGNLGQFLGDGVEFVGGLLRIGIGLLVRSAMGGVGVFGNGGGVSGVCKDDHGNGVDGVCGNDSLGFGSDGINGLIGEGGGFGNL*