AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000808.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000808.01.T01 MTR_1g008060 78.070 114 16 2 34 142 98 207 8.79e-33 122
MsG0180000808.01.T01 MTR_1g008060 78.070 114 16 2 34 142 98 207 1.10e-32 121
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 43 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGTGAAGGAGGTGGTTT+TGG 0.209867 1:-11449778 MsG0180000808.01.T01:CDS
ATGGGTGGTGTAGGTGTATT+TGG 0.278093 1:-11449910 MsG0180000808.01.T01:CDS
TTTGGTTCTGATGGAATTAA+TGG 0.292496 1:-11449805 MsG0180000808.01.T01:CDS
GGAAATGATTCACTTGGTTT+TGG 0.307452 1:-11449823 MsG0180000808.01.T01:CDS
GAGCAAGGGAGTGGGAATTT+AGG 0.307487 1:-11450009 MsG0180000808.01.T01:CDS
TTCCACTAGAGCTGTCAAAA+TGG 0.311813 1:-11451865 MsG0180000808.01.T01:CDS
TAGGAATAGGGTTGTTGGTT+AGG 0.345384 1:-11449939 MsG0180000808.01.T01:CDS
GGTATTGGTTGTGAAAGTTT+TGG 0.374921 1:-11450072 MsG0180000808.01.T01:CDS
GGAAATGGTGGTGGTGTGTC+TGG 0.385118 1:-11449889 MsG0180000808.01.T01:CDS
GATGGAATTAATGGGTTGAT+TGG 0.389707 1:-11449796 MsG0180000808.01.T01:CDS
GAGGATAGGAATAGGGTTGT+TGG 0.395635 1:-11449944 MsG0180000808.01.T01:CDS
GGTGATGGAGTTGAATTTGT+AGG 0.397257 1:-11449976 MsG0180000808.01.T01:CDS
GTTTGTTGAGGATAGGAATA+GGG 0.404790 1:-11449951 MsG0180000808.01.T01:CDS
TGGTGGTGTTATGCTGGTAT+TGG 0.406846 1:-11450087 MsG0180000808.01.T01:CDS
GGGAGGTTTGAGCAAGGGAG+TGG 0.411913 1:-11450018 MsG0180000808.01.T01:CDS
GGTTTGTTGAGGATAGGAAT+AGG 0.425388 1:-11449952 MsG0180000808.01.T01:CDS
TTGGTTCTGATGGAATTAAT+GGG 0.433865 1:-11449804 MsG0180000808.01.T01:CDS
GGTGTAGGTGTATTTGGAAA+TGG 0.464822 1:-11449904 MsG0180000808.01.T01:CDS
TTGTTGGTTAGGTCAGCAAT+GGG 0.472122 1:-11449928 MsG0180000808.01.T01:CDS
AGTGAATGGTGGTGTTATGC+TGG 0.474174 1:-11450093 MsG0180000808.01.T01:CDS
GTTGTTGGTTAGGTCAGCAA+TGG 0.474849 1:-11449929 MsG0180000808.01.T01:CDS
TCCACTAGAGCTGTCAAAAT+GGG 0.482178 1:-11451864 MsG0180000808.01.T01:CDS
AGGTCAGCAATGGGTGGTGT+AGG 0.483730 1:-11449919 MsG0180000808.01.T01:CDS
TGTAAAGATGATCATGGAAA+TGG 0.485929 1:-11449862 MsG0180000808.01.T01:CDS
AATGGTGTTGATGGTGTTTG+TGG 0.491837 1:-11449844 MsG0180000808.01.T01:CDS
GATCATGGAAATGGTGTTGA+TGG 0.491957 1:-11449853 MsG0180000808.01.T01:CDS
GGGGTGGTCAACAAGGTGGG+AGG 0.526910 1:-11450035 MsG0180000808.01.T01:CDS
GGAGGTTTGAGCAAGGGAGT+GGG 0.529520 1:-11450017 MsG0180000808.01.T01:CDS
GTAGGTGTATTTGGAAATGG+TGG 0.530430 1:-11449901 MsG0180000808.01.T01:CDS
GGGTTGATTGGTGAAGGAGG+TGG 0.536505 1:-11449784 MsG0180000808.01.T01:CDS
GTAGGTGGTTTGTTGAGGAT+AGG 0.544872 1:-11449958 MsG0180000808.01.T01:CDS
GGTGTTTGTAAAGATGATCA+TGG 0.551513 1:-11449868 MsG0180000808.01.T01:CDS
GGTGTATTTGGAAATGGTGG+TGG 0.565433 1:-11449898 MsG0180000808.01.T01:CDS
GTTTGTGGAAATGATTCACT+TGG 0.566114 1:-11449829 MsG0180000808.01.T01:CDS
ATTAATGGGTTGATTGGTGA+AGG 0.569110 1:-11449790 MsG0180000808.01.T01:CDS
AATTTGTAGGTGGTTTGTTG+AGG 0.579317 1:-11449963 MsG0180000808.01.T01:CDS
GGTGATGGTGAAGTGAATGG+TGG 0.583403 1:-11450104 MsG0180000808.01.T01:intron
AATGGGTTGATTGGTGAAGG+AGG 0.587408 1:-11449787 MsG0180000808.01.T01:CDS
GATGGAGTTGAATTTGTAGG+TGG 0.600227 1:-11449973 MsG0180000808.01.T01:CDS
TTGGTTAGGTCAGCAATGGG+TGG 0.616293 1:-11449925 MsG0180000808.01.T01:CDS
CAAGGTGGGAGGTTTGAGCA+AGG 0.617632 1:-11450024 MsG0180000808.01.T01:CDS
AAGGTGGGAGGTTTGAGCAA+GGG 0.621572 1:-11450023 MsG0180000808.01.T01:CDS
TTTGGTCTTTGGCAACAAGG+GGG 0.670192 1:-11450054 MsG0180000808.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAACATAAAGAAAATA+AGG + Chr1:11450747-11450766 None:intergenic 10.0%
!!! TTCTTTTTTATATATTTAGA+TGG - Chr1:11450348-11450367 MsG0180000808.01.T01:intron 10.0%
!!! TTTTTTTTAAGGATATTTTT+AGG + Chr1:11450793-11450812 None:intergenic 10.0%
!! TAGAGAAAATAAATTGTTTA+AGG - Chr1:11450860-11450879 MsG0180000808.01.T01:intron 15.0%
!!! AATTACTTATCATTTTCAAA+CGG - Chr1:11450815-11450834 MsG0180000808.01.T01:intron 15.0%
!! AAAAAACTAAATTTGAGAAG+TGG + Chr1:11451303-11451322 None:intergenic 20.0%
!! AAAAACTAAATTTGAGAAGT+GGG + Chr1:11451302-11451321 None:intergenic 20.0%
!! AAAAAGAAAATCTCTAACAA+AGG + Chr1:11450336-11450355 None:intergenic 20.0%
!! ACAAAACCTTTCAAAAAAAA+AGG - Chr1:11450639-11450658 MsG0180000808.01.T01:intron 20.0%
!! TTTCAACTATGAATGAATAA+TGG + Chr1:11451244-11451263 None:intergenic 20.0%
!!! CTCAAATTTAGTTTTTTCAA+TGG - Chr1:11451306-11451325 MsG0180000808.01.T01:intron 20.0%
!!! TATAAAATTTGGAATGATTG+TGG - Chr1:11450033-11450052 MsG0180000808.01.T01:CDS 20.0%
!!! TTTTTCAAGATTTTTTAGTC+CGG - Chr1:11449912-11449931 MsG0180000808.01.T01:CDS 20.0%
! AAAGCTATGGTTTATTGATA+CGG + Chr1:11450685-11450704 None:intergenic 25.0%
! ACCAATCTGAATAAAATGTA+GGG - Chr1:11449865-11449884 MsG0180000808.01.T01:CDS 25.0%
! GGATTTATCAAGAAATTCAT+AGG + Chr1:11450400-11450419 None:intergenic 25.0%
! TTTATCAAGAAATTCATAGG+CGG + Chr1:11450397-11450416 None:intergenic 25.0%
!! ACAAAGTTTGGAAAAGTATA+TGG + Chr1:11451030-11451049 None:intergenic 25.0%
!!! AAGTTCATATTTTAATCCCA+CGG + Chr1:11450520-11450539 None:intergenic 25.0%
!!! CAAAACATCTATTGGTTTAA+GGG + Chr1:11450440-11450459 None:intergenic 25.0%
!!! CATCATCCTTTTTTTTTGAA+AGG + Chr1:11450648-11450667 None:intergenic 25.0%
!!! GAATAATGGATAGTGAAATT+TGG + Chr1:11451230-11451249 None:intergenic 25.0%
AAAAATCCGCCTGAAATTTA+AGG + Chr1:11449896-11449915 None:intergenic 30.0%
AAATACCGGACTAAGTTAAA+AGG - Chr1:11449939-11449958 MsG0180000808.01.T01:CDS 30.0%
AAGAAGTTATGAAGAGAGAA+GGG + Chr1:11451173-11451192 None:intergenic 30.0%
AAGAGAAAAACATGTATGTG+TGG - Chr1:11450474-11450493 MsG0180000808.01.T01:intron 30.0%
AAGCTATGGTTTATTGATAC+GGG + Chr1:11450684-11450703 None:intergenic 30.0%
AAGTATATGGTACTGTGAAA+AGG + Chr1:11451017-11451036 None:intergenic 30.0%
AGGGTTTAACCTTAAATTTC+AGG - Chr1:11449884-11449903 MsG0180000808.01.T01:CDS 30.0%
CAATGAACTTACCTCATTTA+AGG + Chr1:11450281-11450300 None:intergenic 30.0%
CACCAATCTGAATAAAATGT+AGG - Chr1:11449864-11449883 MsG0180000808.01.T01:CDS 30.0%
CTAAGTTAAAAGGTCATTCA+AGG - Chr1:11449949-11449968 MsG0180000808.01.T01:CDS 30.0%
CTGAATAGCAAAAAAAGCTA+TGG + Chr1:11450698-11450717 None:intergenic 30.0%
GGTATCAGTTATGATTATTG+TGG + Chr1:11450988-11451007 None:intergenic 30.0%
GTTTAACCTTAAATTTCAGG+CGG - Chr1:11449887-11449906 MsG0180000808.01.T01:CDS 30.0%
TGTAAAGATGATCATGGAAA+TGG - Chr1:11451823-11451842 MsG0180000808.01.T01:intron 30.0%
! ACCCTACATTTTATTCAGAT+TGG + Chr1:11449869-11449888 None:intergenic 30.0%
! CCTTAAACCAATAGATGTTT+TGG - Chr1:11450438-11450457 MsG0180000808.01.T01:intron 30.0%
! CTACATTTTATTCAGATTGG+TGG + Chr1:11449866-11449885 None:intergenic 30.0%
! GGGAATTTAGGTCAATTTTT+GGG - Chr1:11451688-11451707 MsG0180000808.01.T01:intron 30.0%
! TAACAATGTGTGTCGATAAT+CGG + Chr1:11450722-11450741 None:intergenic 30.0%
! TGGGAATTTAGGTCAATTTT+TGG - Chr1:11451687-11451706 MsG0180000808.01.T01:intron 30.0%
! TGTAAGAAACGTGAATGTTT+TGG + Chr1:11450077-11450096 None:intergenic 30.0%
!! CCAAAACATCTATTGGTTTA+AGG + Chr1:11450441-11450460 None:intergenic 30.0%
!! GTTGTTGATGATCATGATAA+TGG - Chr1:11451498-11451517 MsG0180000808.01.T01:intron 30.0%
!! TAAACCAATAGATGTTTTGG+TGG - Chr1:11450441-11450460 MsG0180000808.01.T01:intron 30.0%
!! TTGGTTCTGATGGAATTAAT+GGG - Chr1:11451881-11451900 MsG0180000808.01.T01:CDS 30.0%
!! TTTGGTTCTGATGGAATTAA+TGG - Chr1:11451880-11451899 MsG0180000808.01.T01:CDS 30.0%
!!! AATGACCTTTTAACTTAGTC+CGG + Chr1:11449947-11449966 None:intergenic 30.0%
!!! GTTTTTTCAATGGATGAAAC+TGG - Chr1:11451316-11451335 MsG0180000808.01.T01:intron 30.0%
AAACACAGTGTTCAATGTAG+AGG + Chr1:11451140-11451159 None:intergenic 35.0%
AAGACTGGTGGAATAAGAAA+TGG - Chr1:11451471-11451490 MsG0180000808.01.T01:intron 35.0%
AGAAGTTATGAAGAGAGAAG+GGG + Chr1:11451172-11451191 None:intergenic 35.0%
AGACTGGTGGAATAAGAAAT+GGG - Chr1:11451472-11451491 MsG0180000808.01.T01:intron 35.0%
ATAAAACCCTAAGCCTGTTA+TGG - Chr1:11450251-11450270 MsG0180000808.01.T01:intron 35.0%
ATGTCCACCAAAACATCTAT+TGG + Chr1:11450448-11450467 None:intergenic 35.0%
ATTTAGCCCGCAATTTGTAT+AGG - Chr1:11450165-11450184 MsG0180000808.01.T01:intron 35.0%
CAACAGAACTACTACAATTC+TGG + Chr1:11451449-11451468 None:intergenic 35.0%
GAAGAAGTTATGAAGAGAGA+AGG + Chr1:11451174-11451193 None:intergenic 35.0%
GGTGTTTGTAAAGATGATCA+TGG - Chr1:11451817-11451836 MsG0180000808.01.T01:intron 35.0%
GTTTGTGGAAATGATTCACT+TGG - Chr1:11451856-11451875 MsG0180000808.01.T01:intron 35.0%
TAAAACCCTAAGCCTGTTAT+GGG - Chr1:11450252-11450271 MsG0180000808.01.T01:intron 35.0%
TTTAGCCCGCAATTTGTATA+GGG - Chr1:11450166-11450185 MsG0180000808.01.T01:intron 35.0%
TTTCTTGATAAATCCACCAG+AGG - Chr1:11450405-11450424 MsG0180000808.01.T01:intron 35.0%
! AGTAGTTCTGTTGAAAAGAC+TGG - Chr1:11451456-11451475 MsG0180000808.01.T01:intron 35.0%
! ATACAAATTGCGGGCTAAAT+GGG + Chr1:11450165-11450184 None:intergenic 35.0%
! CATGGTGTTTGTTGAAGATT+TGG - Chr1:11451548-11451567 MsG0180000808.01.T01:intron 35.0%
! GAACACAAATGCAAAAGTGT+TGG + Chr1:11450586-11450605 None:intergenic 35.0%
! GGAAATGATTCACTTGGTTT+TGG - Chr1:11451862-11451881 MsG0180000808.01.T01:CDS 35.0%
! GTGTTTGTTGAAGATTTGGA+GGG - Chr1:11451552-11451571 MsG0180000808.01.T01:intron 35.0%
! GTTTGTTGAGGATAGGAATA+GGG - Chr1:11451734-11451753 MsG0180000808.01.T01:intron 35.0%
! TATACAAATTGCGGGCTAAA+TGG + Chr1:11450166-11450185 None:intergenic 35.0%
! TGAAGATTTGGAGGGATTTT+TGG - Chr1:11451560-11451579 MsG0180000808.01.T01:intron 35.0%
! TTTAGTCCGGTCTAAAATAC+CGG - Chr1:11449925-11449944 MsG0180000808.01.T01:CDS 35.0%
!! AATTTGTAGGTGGTTTGTTG+AGG - Chr1:11451722-11451741 MsG0180000808.01.T01:intron 35.0%
!! ATTAATGGGTTGATTGGTGA+AGG - Chr1:11451895-11451914 MsG0180000808.01.T01:CDS 35.0%
!! GATCATGATAATGGAGGTAA+GGG - Chr1:11451507-11451526 MsG0180000808.01.T01:intron 35.0%
!! GATGGAATTAATGGGTTGAT+TGG - Chr1:11451889-11451908 MsG0180000808.01.T01:CDS 35.0%
!! GTTGATGATCATGATAATGG+AGG - Chr1:11451501-11451520 MsG0180000808.01.T01:intron 35.0%
!! GTTGTGAAAGTTTTGGTCTT+TGG - Chr1:11451620-11451639 MsG0180000808.01.T01:intron 35.0%
!! TGATCATGATAATGGAGGTA+AGG - Chr1:11451506-11451525 MsG0180000808.01.T01:intron 35.0%
!! TTTTATTCAGATTGGTGGAC+TGG + Chr1:11449861-11449880 None:intergenic 35.0%
!!! GGTATTGGTTGTGAAAGTTT+TGG - Chr1:11451613-11451632 MsG0180000808.01.T01:intron 35.0%
!!! TTAGGTCAATTTTTGGGTGA+TGG - Chr1:11451694-11451713 MsG0180000808.01.T01:intron 35.0%
AATCTAGCGACGACAAAGTT+TGG + Chr1:11451042-11451061 None:intergenic 40.0%
ACTCAGCCCTATACAAATTG+CGG + Chr1:11450175-11450194 None:intergenic 40.0%
ACTCATGATGCCTTTCACAA+TGG + Chr1:11451417-11451436 None:intergenic 40.0%
AGTTCTGTTGAAAAGACTGG+TGG - Chr1:11451459-11451478 MsG0180000808.01.T01:intron 40.0%
ATTTGTATAGGGCTGAGTTC+AGG - Chr1:11450177-11450196 MsG0180000808.01.T01:intron 40.0%
CTATGGTTTATTGATACGGG+AGG + Chr1:11450681-11450700 None:intergenic 40.0%
CTCATGATGCCTTTCACAAT+GGG + Chr1:11451416-11451435 None:intergenic 40.0%
CTGGAAAAACCCATTGTGAA+AGG - Chr1:11451404-11451423 MsG0180000808.01.T01:intron 40.0%
GACTGGTGGAATAAGAAATG+GGG - Chr1:11451473-11451492 MsG0180000808.01.T01:intron 40.0%
GATGGAGTTGAATTTGTAGG+TGG - Chr1:11451712-11451731 MsG0180000808.01.T01:intron 40.0%
GGTGTAGGTGTATTTGGAAA+TGG - Chr1:11451781-11451800 MsG0180000808.01.T01:intron 40.0%
GTAGGTGTATTTGGAAATGG+TGG - Chr1:11451784-11451803 MsG0180000808.01.T01:intron 40.0%
GTTATGGGCAACCTTAAATG+AGG - Chr1:11450267-11450286 MsG0180000808.01.T01:intron 40.0%
TAATGGAGGTAAGGGTTGTT+TGG - Chr1:11451515-11451534 MsG0180000808.01.T01:intron 40.0%
TACTGAGTAGTAGTAGGACT+AGG + Chr1:11451111-11451130 None:intergenic 40.0%
TCCACTAGAGCTGTCAAAAT+GGG - Chr1:11449821-11449840 MsG0180000808.01.T01:CDS 40.0%
TGAAACTGGTGAATGAGTCT+AGG - Chr1:11451330-11451349 MsG0180000808.01.T01:intron 40.0%
TTAAGGGTAGACATTTCCTC+TGG + Chr1:11450424-11450443 None:intergenic 40.0%
TTCCACTAGAGCTGTCAAAA+TGG - Chr1:11449820-11449839 MsG0180000808.01.T01:CDS 40.0%
! CATTTAAGGTTGCCCATAAC+AGG + Chr1:11450267-11450286 None:intergenic 40.0%
! CTAGGAGGTGTAGTAGAAAA+GGG - Chr1:11451348-11451367 MsG0180000808.01.T01:intron 40.0%
! GATCATGGAAATGGTGTTGA+TGG - Chr1:11451832-11451851 MsG0180000808.01.T01:intron 40.0%
! GGTGTTTGTTGAAGATTTGG+AGG - Chr1:11451551-11451570 MsG0180000808.01.T01:intron 40.0%
! TAGGAATAGGGTTGTTGGTT+AGG - Chr1:11451746-11451765 MsG0180000808.01.T01:intron 40.0%
! TCTAGGAGGTGTAGTAGAAA+AGG - Chr1:11451347-11451366 MsG0180000808.01.T01:intron 40.0%
! TTGTTGGTTAGGTCAGCAAT+GGG - Chr1:11451757-11451776 MsG0180000808.01.T01:intron 40.0%
!! AATGGTGTTGATGGTGTTTG+TGG - Chr1:11451841-11451860 MsG0180000808.01.T01:intron 40.0%
!! AGAGAGTACTGAGTAGTAGT+AGG + Chr1:11451117-11451136 None:intergenic 40.0%
!! AGTTTTGGTCTTTGGCAACA+AGG - Chr1:11451628-11451647 MsG0180000808.01.T01:intron 40.0%
!! CTTAGTCCGGTATTTTAGAC+CGG + Chr1:11449934-11449953 None:intergenic 40.0%
!! CTTTCACAATGGGTTTTTCC+AGG + Chr1:11451406-11451425 None:intergenic 40.0%
!! GGTGATGGAGTTGAATTTGT+AGG - Chr1:11451709-11451728 MsG0180000808.01.T01:intron 40.0%
!! GGTTTGTTGAGGATAGGAAT+AGG - Chr1:11451733-11451752 MsG0180000808.01.T01:intron 40.0%
!! GTTTTGGTCTTTGGCAACAA+GGG - Chr1:11451629-11451648 MsG0180000808.01.T01:intron 40.0%
!! TTGTTTGGTGGTGATGATCA+TGG - Chr1:11451530-11451549 MsG0180000808.01.T01:intron 40.0%
!! TTTGGTGATGGTGAAGTGAA+TGG - Chr1:11451578-11451597 MsG0180000808.01.T01:intron 40.0%
!! TTTTGGTCTTTGGCAACAAG+GGG - Chr1:11451630-11451649 MsG0180000808.01.T01:intron 40.0%
!!! AGAGAGAAAGCGTTGTCTTT+TGG + Chr1:11451066-11451085 None:intergenic 40.0%
!!! GAAACGTGAATGTTTTGGAG+AGG + Chr1:11450072-11450091 None:intergenic 40.0%
!!! GAGAGAAAGCGTTGTCTTTT+GGG + Chr1:11451065-11451084 None:intergenic 40.0%
!!! TCACTTGGTTTTGGTTCTGA+TGG - Chr1:11451871-11451890 MsG0180000808.01.T01:CDS 40.0%
!!! TTTGGAGGGATTTTTGGTGA+TGG - Chr1:11451566-11451585 MsG0180000808.01.T01:intron 40.0%
AACTGGTGAATGAGTCTAGG+AGG - Chr1:11451333-11451352 MsG0180000808.01.T01:intron 45.0%
AGTAGAAAAGGGTCAGTGGA+TGG - Chr1:11451359-11451378 MsG0180000808.01.T01:intron 45.0%
AGTAGTAGGACTAGGACAGT+GGG + Chr1:11451103-11451122 None:intergenic 45.0%
ATGGGTGGTGTAGGTGTATT+TGG - Chr1:11451775-11451794 MsG0180000808.01.T01:intron 45.0%
CTCAGCCCTATACAAATTGC+GGG + Chr1:11450174-11450193 None:intergenic 45.0%
GAGGATAGGAATAGGGTTGT+TGG - Chr1:11451741-11451760 MsG0180000808.01.T01:intron 45.0%
GGTACTGTGAAAAGGACAGA+TGG + Chr1:11451009-11451028 None:intergenic 45.0%
GGTGTATTTGGAAATGGTGG+TGG - Chr1:11451787-11451806 MsG0180000808.01.T01:intron 45.0%
GTGTAGTAGAAAAGGGTCAG+TGG - Chr1:11451355-11451374 MsG0180000808.01.T01:intron 45.0%
TAGTAGTAGGACTAGGACAG+TGG + Chr1:11451104-11451123 None:intergenic 45.0%
TGCAAAGAGCAAGCTTTACC+TGG - Chr1:11451385-11451404 MsG0180000808.01.T01:intron 45.0%
TGTATGTGTGGACTTGAGTG+AGG - Chr1:11450486-11450505 MsG0180000808.01.T01:intron 45.0%
! ATTGGTGAAGGAGGTGGTTT+TGG - Chr1:11451907-11451926 MsG0180000808.01.T01:CDS 45.0%
! GTTGTTGGTTAGGTCAGCAA+TGG - Chr1:11451756-11451775 MsG0180000808.01.T01:intron 45.0%
! TTGGTGAAGGAGGTGGTTTT+GGG - Chr1:11451908-11451927 MsG0180000808.01.T01:CDS 45.0%
! TTTGGTCTTTGGCAACAAGG+GGG - Chr1:11451631-11451650 MsG0180000808.01.T01:intron 45.0%
!! AATGGGTTGATTGGTGAAGG+AGG - Chr1:11451898-11451917 MsG0180000808.01.T01:CDS 45.0%
!! AGTGAATGGTGGTGTTATGC+TGG - Chr1:11451592-11451611 MsG0180000808.01.T01:intron 45.0%
!! GTAGGTGGTTTGTTGAGGAT+AGG - Chr1:11451727-11451746 MsG0180000808.01.T01:intron 45.0%
!! TCAAAATGGGCTAGCACGTA+TGG - Chr1:11449834-11449853 MsG0180000808.01.T01:CDS 45.0%
!! TGGTGGTGTTATGCTGGTAT+TGG - Chr1:11451598-11451617 MsG0180000808.01.T01:intron 45.0%
!!! TAAGTAATTAATTTTTTTTA+AGG + Chr1:11450804-11450823 None:intergenic 5.0%
!!! TTTTTATGAATTATAAAATT+TGG - Chr1:11450022-11450041 MsG0180000808.01.T01:CDS 5.0%
AAGGTGGGAGGTTTGAGCAA+GGG - Chr1:11451662-11451681 MsG0180000808.01.T01:intron 50.0%
AGAAAAGGGTCAGTGGATGG+AGG - Chr1:11451362-11451381 MsG0180000808.01.T01:intron 50.0%
AGGGTAGACATTTCCTCTGG+TGG + Chr1:11450421-11450440 None:intergenic 50.0%
AGGTTGCCCATAACAGGCTT+AGG + Chr1:11450261-11450280 None:intergenic 50.0%
GAGCAAGGGAGTGGGAATTT+AGG - Chr1:11451676-11451695 MsG0180000808.01.T01:intron 50.0%
GAGTGAGGTTATCTCACCGT+GGG - Chr1:11450501-11450520 MsG0180000808.01.T01:intron 50.0%
GGTTGCCCATAACAGGCTTA+GGG + Chr1:11450260-11450279 None:intergenic 50.0%
TGAGTGAGGTTATCTCACCG+TGG - Chr1:11450500-11450519 MsG0180000808.01.T01:intron 50.0%
TGGAGGTAAGGGTTGTTTGG+TGG - Chr1:11451518-11451537 MsG0180000808.01.T01:intron 50.0%
TTGGTTAGGTCAGCAATGGG+TGG - Chr1:11451760-11451779 MsG0180000808.01.T01:intron 50.0%
! GGTGATGGTGAAGTGAATGG+TGG - Chr1:11451581-11451600 MsG0180000808.01.T01:intron 50.0%
!! GCCCATTTTGACAGCTCTAG+TGG + Chr1:11449825-11449844 None:intergenic 50.0%
AAGGGGGTGGTCAACAAGGT+GGG - Chr1:11451647-11451666 MsG0180000808.01.T01:intron 55.0%
AGGTCAGCAATGGGTGGTGT+AGG - Chr1:11451766-11451785 MsG0180000808.01.T01:intron 55.0%
CAACAAGGGGGTGGTCAACA+AGG - Chr1:11451643-11451662 MsG0180000808.01.T01:intron 55.0%
CAAGGTGGGAGGTTTGAGCA+AGG - Chr1:11451661-11451680 MsG0180000808.01.T01:intron 55.0%
GACAGTGGGAAGTGAGAGAG+AGG + Chr1:11451089-11451108 None:intergenic 55.0%
GGAGGTTTGAGCAAGGGAGT+GGG - Chr1:11451668-11451687 MsG0180000808.01.T01:intron 55.0%
! GGGTTGATTGGTGAAGGAGG+TGG - Chr1:11451901-11451920 MsG0180000808.01.T01:CDS 55.0%
!! GGAAATGGTGGTGGTGTGTC+TGG - Chr1:11451796-11451815 MsG0180000808.01.T01:intron 55.0%
CAAGGGGGTGGTCAACAAGG+TGG - Chr1:11451646-11451665 MsG0180000808.01.T01:intron 60.0%
GGGAGGTTTGAGCAAGGGAG+TGG - Chr1:11451667-11451686 MsG0180000808.01.T01:intron 60.0%
GGTCTTTGGCAACAAGGGGG+TGG - Chr1:11451634-11451653 MsG0180000808.01.T01:intron 60.0%
GGGGTGGTCAACAAGGTGGG+AGG - Chr1:11451650-11451669 MsG0180000808.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 11449768 11451939 11449768 ID=MsG0180000808.01;Name=MsG0180000808.01
Chr1 mRNA 11449768 11451939 11449768 ID=MsG0180000808.01.T01;Parent=MsG0180000808.01;Name=MsG0180000808.01.T01;_AED=0.58;_eAED=0.61;_QI=0|0|0|0.5|1|1|2|0|142
Chr1 exon 11451857 11451939 11451857 ID=MsG0180000808.01.T01:exon:766;Parent=MsG0180000808.01.T01
Chr1 exon 11449768 11450113 11449768 ID=MsG0180000808.01.T01:exon:767;Parent=MsG0180000808.01.T01
Chr1 CDS 11451857 11451939 11451857 ID=MsG0180000808.01.T01:cds;Parent=MsG0180000808.01.T01
Chr1 CDS 11449768 11450113 11449768 ID=MsG0180000808.01.T01:cds;Parent=MsG0180000808.01.T01
Gene Sequence

>MsG0180000808.01.T01

ATGATTTTAGATTTTTCATTGATGAATATTGCACTGTTCGTGTATCTTTATGTTCCACTAGAGCTGTCAAAATGGGCTAGCACTGAATGGTGGTGTTATGCTGGTATTGGTTGTGAAAGTTTTGGTCTTTGGCAACAAGGGGGTGGTCAACAAGGTGGGAGGTTTGAGCAAGGGAGTGGGAATTTAGGTCAATTTTTGGGTGATGGAGTTGAATTTGTAGGTGGTTTGTTGAGGATAGGAATAGGGTTGTTGGTTAGGTCAGCAATGGGTGGTGTAGGTGTATTTGGAAATGGTGGTGGTGTGTCTGGTGTTTGTAAAGATGATCATGGAAATGGTGTTGATGGTGTTTGTGGAAATGATTCACTTGGTTTTGGTTCTGATGGAATTAATGGGTTGATTGGTGAAGGAGGTGGTTTTGGGAATTTATGA
Protein sequence

>MsG0180000808.01.T01

MILDFSLMNIALFVYLYVPLELSKWASTEWWCYAGIGCESFGLWQQGGGQQGGRFEQGSGNLGQFLGDGVEFVGGLLRIGIGLLVRSAMGGVGVFGNGGGVSGVCKDDHGNGVDGVCGNDSLGFGSDGINGLIGEGGGFGNL*