AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020739.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020739.01.T01 MTR_4g057765 93.893 262 12 2 89 350 67 324 6.61e-154 435
MsG0480020739.01.T01 MTR_2g095480 49.367 237 101 4 15 250 7 225 1.36e-42 151
MsG0480020739.01.T01 MTR_7g101930 36.607 336 139 9 89 350 14 349 4.61e-42 150
MsG0480020739.01.T01 MTR_1g063210 39.458 332 143 6 70 350 9 333 2.52e-39 142
MsG0480020739.01.T01 MTR_0041s0140 47.368 190 73 4 89 255 14 199 1.08e-36 133
MsG0480020739.01.T01 MTR_3g435930 29.368 269 135 5 84 350 22 237 1.09e-27 108
MsG0480020739.01.T01 MTR_8g096700 31.579 285 155 7 90 350 53 321 3.07e-26 107
MsG0480020739.01.T01 MTR_2g026685 34.601 263 142 4 90 350 35 269 1.76e-24 101
MsG0480020739.01.T01 MTR_2g026685 34.601 263 142 4 90 350 36 270 1.79e-24 101
MsG0480020739.01.T01 MTR_2g026685 33.852 257 140 4 96 350 1 229 1.89e-23 97.4
MsG0480020739.01.T01 MTR_3g099030 34.194 155 99 2 90 243 36 188 3.93e-20 89.0
MsG0480020739.01.T01 MTR_3g093020 29.779 272 157 7 88 349 36 283 8.03e-20 88.6
MsG0480020739.01.T01 MTR_3g099040 34.839 155 99 2 90 243 36 189 8.33e-20 89.0
MsG0480020739.01.T01 MTR_8g010540 29.740 269 143 6 89 347 30 262 9.08e-20 88.2
MsG0480020739.01.T01 MTR_5g069180 28.125 160 106 2 91 250 56 206 1.68e-15 76.6
MsG0480020739.01.T01 MTR_4g006650 36.667 120 74 2 90 208 169 287 3.79e-14 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020739.01.T01 AT5G60800 49.818 275 105 4 90 350 28 283 2.14e-56 185
MsG0480020739.01.T01 AT5G60800 49.455 275 106 4 90 350 28 283 2.35e-55 183
MsG0480020739.01.T01 AT5G03380 38.889 234 99 5 55 255 2 224 2.59e-37 138
MsG0480020739.01.T01 AT5G03380 40.609 197 84 3 92 255 1 197 1.46e-35 133
MsG0480020739.01.T01 AT3G02960 30.640 297 144 8 60 350 6 246 1.99e-32 122
MsG0480020739.01.T01 AT2G36950 34.821 336 141 9 91 350 53 386 5.28e-32 124
MsG0480020739.01.T01 AT2G28090 44.022 184 86 5 76 250 12 187 2.05e-31 119
MsG0480020739.01.T01 AT5G50740 32.180 289 134 8 90 350 29 283 3.91e-28 111
MsG0480020739.01.T01 AT5G50740 32.180 289 134 8 90 350 29 283 3.91e-28 111
MsG0480020739.01.T01 AT5G50740 32.180 289 134 8 90 350 36 290 9.59e-28 110
MsG0480020739.01.T01 AT5G24580 29.480 173 113 3 91 262 58 222 6.36e-19 86.7
MsG0480020739.01.T01 AT5G24580 29.480 173 113 3 91 262 59 223 6.50e-19 86.7
MsG0480020739.01.T01 AT5G24580 29.480 173 113 3 91 262 59 223 6.50e-19 86.7
MsG0480020739.01.T01 AT5G50740 39.695 131 61 3 90 211 29 150 1.57e-18 82.0
MsG0480020739.01.T01 AT5G63530 37.107 159 89 4 90 242 75 228 1.82e-18 85.9
MsG0480020739.01.T01 AT5G63530 37.107 159 89 4 90 242 60 213 1.87e-18 85.5
MsG0480020739.01.T01 AT5G50740 39.695 131 61 3 90 211 36 157 3.74e-18 81.3
MsG0480020739.01.T01 AT1G29000 32.298 161 108 1 91 250 18 178 1.60e-16 79.3
MsG0480020739.01.T01 AT1G29000 32.298 161 108 1 91 250 18 178 1.60e-16 79.3
MsG0480020739.01.T01 AT5G24580 28.902 173 111 4 91 262 59 220 1.01e-15 77.4
MsG0480020739.01.T01 AT5G24580 26.639 244 140 5 126 349 7 231 7.40e-14 70.9
MsG0480020739.01.T01 AT3G05220 54.237 59 27 0 86 144 8 66 1.08e-11 66.2
MsG0480020739.01.T01 AT5G19090 47.619 84 42 2 86 169 8 89 2.74e-11 65.1
MsG0480020739.01.T01 AT5G19090 47.619 84 42 2 86 169 8 89 2.74e-11 65.1
MsG0480020739.01.T01 AT5G19090 47.619 84 42 2 86 169 8 89 3.59e-11 64.7
MsG0480020739.01.T01 AT5G19090 47.619 84 42 2 86 169 8 89 3.59e-11 64.7
MsG0480020739.01.T01 AT5G19090 47.619 84 42 2 86 169 8 89 3.59e-11 64.7
MsG0480020739.01.T01 AT3G06130 54.237 59 27 0 86 144 8 66 5.18e-11 63.9
MsG0480020739.01.T01 AT3G06130 54.237 59 27 0 86 144 8 66 5.59e-11 63.5

Find 67 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGTTGTTATCCTTCT+TGG 0.114690 4:-47471021 None:intergenic
CCACCTTCCTTGTCTTTCTT+TGG 0.170033 4:-47471518 None:intergenic
GTTCAACAACCCTTTGGTTT+TGG 0.304034 4:+47471665 MsG0480020739.01.T01:CDS
GAAGGAAATGAAGGAGGAGG+TGG 0.326527 4:+47471560 MsG0480020739.01.T01:CDS
GGAAATGAAGGAGGAGGTGG+GGG 0.336245 4:+47471563 MsG0480020739.01.T01:CDS
AGGAAATGAAGGAGGAGGTG+GGG 0.344884 4:+47471562 MsG0480020739.01.T01:CDS
TTCTTGTTGTTATCCTTCTT+GGG 0.350090 4:-47471020 None:intergenic
AGTTAAGATAATGGAGTATA+TGG 0.364486 4:+47471643 MsG0480020739.01.T01:CDS
TCAAACCTTTGATGCTGTTA+AGG 0.370035 4:-47470725 None:intergenic
ATTTATCACAGAAGCTTAAG+AGG 0.379478 4:+47471477 MsG0480020739.01.T01:CDS
CAAGGATGTATTGATAAGAT+TGG 0.393223 4:+47471243 MsG0480020739.01.T01:CDS
AGGAGGAGAAGTTAAGATAA+TGG 0.394798 4:+47471634 MsG0480020739.01.T01:CDS
TTTGATGCTGTTAAGGTGTT+TGG 0.396644 4:-47470718 None:intergenic
AAGGAAGGTGGTGGTGGTGG+TGG 0.421210 4:+47471530 MsG0480020739.01.T01:CDS
GACAAGGAAGGTGGTGGTGG+TGG 0.426526 4:+47471527 MsG0480020739.01.T01:CDS
TATGAATATTTAACATCTCT+TGG 0.428843 4:-47471733 None:intergenic
AAGGAAATGAAGGAGGAGGT+GGG 0.437708 4:+47471561 MsG0480020739.01.T01:CDS
CAACAATGGAGGAGAGAAGA+AGG 0.441440 4:+47470554 MsG0480020739.01.T01:CDS
AAGGATGTATTGATAAGATT+GGG 0.459716 4:+47471244 MsG0480020739.01.T01:CDS
TTGTTATCCTTCTTGGGAAG+TGG 0.460354 4:-47471014 None:intergenic
TATATGGTTCAACAACCCTT+TGG 0.467046 4:+47471659 MsG0480020739.01.T01:CDS
TTCTCATCACTAAACATTTG+TGG 0.482907 4:-47471770 None:intergenic
GAAAACAACAACAACAATGA+AGG 0.493534 4:+47470492 MsG0480020739.01.T01:CDS
CAACAATGGAGGAGATAAGA+AGG 0.494392 4:+47470617 MsG0480020739.01.T01:CDS
GGGGTCCACATTTCCGGTGA+CGG 0.497438 4:-47470934 None:intergenic
TATGGAAATGTAAATGTTGA+AGG 0.501810 4:+47471689 MsG0480020739.01.T01:CDS
CATTTCACCACTTCCCAAGA+AGG 0.504323 4:+47471007 MsG0480020739.01.T01:CDS
GATGGTAATAACAATGAAGC+AGG 0.507061 4:+47471614 MsG0480020739.01.T01:CDS
AAAGACAAGGAAGGTGGTGG+TGG 0.508002 4:+47471524 MsG0480020739.01.T01:CDS
CACATGACAATGCAAGCATT+AGG 0.517378 4:-47471794 None:intergenic
AAAATTGTTATGAAAACTAA+AGG 0.517522 4:+47471267 MsG0480020739.01.T01:CDS
GAGGTAAGAAGAAGAACAAG+GGG 0.518923 4:+47471585 MsG0480020739.01.T01:CDS
TTTCCATAACCAAAACCAAA+GGG 0.521572 4:-47471674 None:intergenic
ATCACAGAAGCTTAAGAGGA+AGG 0.524713 4:+47471481 MsG0480020739.01.T01:CDS
GGTGAGAAGGAAGGAAATGA+AGG 0.524894 4:+47471551 MsG0480020739.01.T01:CDS
AAGGAAGGAAATGAAGGAGG+AGG 0.525413 4:+47471557 MsG0480020739.01.T01:CDS
GGTGGTGGTGGTGAGAAGGA+AGG 0.527573 4:+47471542 MsG0480020739.01.T01:CDS
CAACAACAATGAAGGAAACA+AGG 0.532707 4:+47470500 MsG0480020739.01.T01:CDS
ACCGGAAAAGTAACCGTCAC+CGG 0.547833 4:+47470921 MsG0480020739.01.T01:CDS
AAGGATAATGTGACTGTGAA+GGG 0.550110 4:+47471425 MsG0480020739.01.T01:CDS
GAAGCTTAAGAGGAAGGTTG+AGG 0.551168 4:+47471487 MsG0480020739.01.T01:CDS
GAAGGATAATGTGACTGTGA+AGG 0.553982 4:+47471424 MsG0480020739.01.T01:CDS
AAACACCTTAACAGCATCAA+AGG 0.557937 4:+47470720 MsG0480020739.01.T01:CDS
GGTAAGAAGAAGAACAAGGG+GGG 0.560885 4:+47471587 MsG0480020739.01.T01:CDS
GTGAAAGCAGAGAGTGAGAC+CGG 0.562750 4:+47470903 MsG0480020739.01.T01:CDS
AGGTAAGAAGAAGAACAAGG+GGG 0.566617 4:+47471586 MsG0480020739.01.T01:CDS
TACCAATTTCAAAACAGAAG+TGG 0.568866 4:-47471211 None:intergenic
AGTAACCGTCACCGGAAATG+TGG 0.571019 4:+47470929 MsG0480020739.01.T01:CDS
CAAGAAGGATAACAACAAGA+AGG 0.577155 4:+47471022 MsG0480020739.01.T01:CDS
AAAGTTTATATGCATTGCGA+AGG 0.581995 4:+47470678 MsG0480020739.01.T01:CDS
GAGAAGGAAGGAAATGAAGG+AGG 0.583328 4:+47471554 MsG0480020739.01.T01:CDS
AATGAAAGTTGATAAAGAGA+AGG 0.588678 4:+47471406 MsG0480020739.01.T01:CDS
ATGGAAATGTAAATGTTGAA+GGG 0.589008 4:+47471690 MsG0480020739.01.T01:CDS
ATTTCCATAACCAAAACCAA+AGG 0.595132 4:-47471675 None:intergenic
GGAGGTAAGAAGAAGAACAA+GGG 0.601818 4:+47471584 MsG0480020739.01.T01:CDS
GGGAGGTAAGAAGAAGAACA+AGG 0.606219 4:+47471583 MsG0480020739.01.T01:CDS
AAGAAGGAAGAGAACAACAA+AGG 0.625603 4:+47470633 MsG0480020739.01.T01:CDS
AAATTGGTACTACACTGTCA+AGG 0.625937 4:+47471225 MsG0480020739.01.T01:CDS
TCATCACTAAACATTTGTGG+TGG 0.630320 4:-47471767 None:intergenic
AAGAAAGACAAGGAAGGTGG+TGG 0.634788 4:+47471521 MsG0480020739.01.T01:CDS
GGTAATAACAATGAAGCAGG+AGG 0.639502 4:+47471617 MsG0480020739.01.T01:CDS
TGTGACTGTGAAGGGTACAA+TGG 0.642558 4:+47471433 MsG0480020739.01.T01:CDS
GGAGGAGAGAAGAACAACAA+TGG 0.646517 4:+47470603 MsG0480020739.01.T01:CDS
CCAAAGAAAGACAAGGAAGG+TGG 0.648516 4:+47471518 MsG0480020739.01.T01:CDS
CAACCAAAGAAAGACAAGGA+AGG 0.655515 4:+47471515 MsG0480020739.01.T01:CDS
GGAGAGAAGAACAACAATGG+AGG 0.671058 4:+47470606 MsG0480020739.01.T01:CDS
AGTTCAACCAAAGAAAGACA+AGG 0.673352 4:+47471511 MsG0480020739.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGATTTGTTTTAATTTTT+TGG + Chr4:47471150-47471169 MsG0480020739.01.T01:intron 10.0%
!! AAAATTGTTATGAAAACTAA+AGG + Chr4:47471267-47471286 MsG0480020739.01.T01:CDS 15.0%
!!! ATTTATTTTTGTCTATGATT+TGG + Chr4:47471326-47471345 MsG0480020739.01.T01:intron 15.0%
!! TATGAATATTTAACATCTCT+TGG - Chr4:47471736-47471755 None:intergenic 20.0%
!! TTACAGAAGAAGAAAAATAA+GGG + Chr4:47470408-47470427 MsG0480020739.01.T01:CDS 20.0%
! AACAACAAAAACAACAACAA+TGG + Chr4:47470582-47470601 MsG0480020739.01.T01:CDS 25.0%
! ATGGAAATGTAAATGTTGAA+GGG + Chr4:47471690-47471709 MsG0480020739.01.T01:CDS 25.0%
! CTTACAGAAGAAGAAAAATA+AGG + Chr4:47470407-47470426 MsG0480020739.01.T01:CDS 25.0%
! GAAAAAATGTTTAGAAACAG+AGG - Chr4:47470764-47470783 None:intergenic 25.0%
! GAAAAATGAAGACAAAAAAG+AGG + Chr4:47471076-47471095 MsG0480020739.01.T01:CDS 25.0%
! TATGGAAATGTAAATGTTGA+AGG + Chr4:47471689-47471708 MsG0480020739.01.T01:CDS 25.0%
!! AAGGATGTATTGATAAGATT+GGG + Chr4:47471244-47471263 MsG0480020739.01.T01:CDS 25.0%
!!! AATGAAAGTTGATAAAGAGA+AGG + Chr4:47471406-47471425 MsG0480020739.01.T01:CDS 25.0%
!!! AGTTAAGATAATGGAGTATA+TGG + Chr4:47471643-47471662 MsG0480020739.01.T01:CDS 25.0%
!!! TGTTTTTTAAGGTGTTGATA+CGG + Chr4:47470881-47470900 MsG0480020739.01.T01:intron 25.0%
!!! TTCGTTTTGTGTGTTTTTTA+AGG + Chr4:47470870-47470889 MsG0480020739.01.T01:intron 25.0%
!!! TTCTCATCAGATTTTTTGTT+TGG - Chr4:47471056-47471075 None:intergenic 25.0%
AAACACACAAAACGAAAACA+TGG - Chr4:47470866-47470885 None:intergenic 30.0%
AAAGTTTATATGCATTGCGA+AGG + Chr4:47470678-47470697 MsG0480020739.01.T01:CDS 30.0%
AACAAAAACAACAACAATGG+AGG + Chr4:47470585-47470604 MsG0480020739.01.T01:CDS 30.0%
AACAACAACAACAACAACAA+TGG + Chr4:47470456-47470475 MsG0480020739.01.T01:CDS 30.0%
AAGAAAAATAAGGGTGGAAA+TGG + Chr4:47470417-47470436 MsG0480020739.01.T01:CDS 30.0%
ATTTATCACAGAAGCTTAAG+AGG + Chr4:47471477-47471496 MsG0480020739.01.T01:CDS 30.0%
ATTTCCATAACCAAAACCAA+AGG - Chr4:47471678-47471697 None:intergenic 30.0%
GAAAACAACAACAACAATGA+AGG + Chr4:47470492-47470511 MsG0480020739.01.T01:CDS 30.0%
TACCAATTTCAAAACAGAAG+TGG - Chr4:47471214-47471233 None:intergenic 30.0%
TTCTCATCACTAAACATTTG+TGG - Chr4:47471773-47471792 None:intergenic 30.0%
TTTCCATAACCAAAACCAAA+GGG - Chr4:47471677-47471696 None:intergenic 30.0%
! CAAGGATGTATTGATAAGAT+TGG + Chr4:47471243-47471262 MsG0480020739.01.T01:CDS 30.0%
!! CATATGATTTTGATGTGTGT+AGG + Chr4:47471374-47471393 MsG0480020739.01.T01:intron 30.0%
!! TTCTTGTTGTTATCCTTCTT+GGG - Chr4:47471023-47471042 None:intergenic 30.0%
!!! CTAAACATTTTTTCCGATCT+GGG + Chr4:47470770-47470789 MsG0480020739.01.T01:intron 30.0%
!!! TACCACTTCTGTTTTGAAAT+TGG + Chr4:47471209-47471228 MsG0480020739.01.T01:CDS 30.0%
!!! TCTAAACATTTTTTCCGATC+TGG + Chr4:47470769-47470788 MsG0480020739.01.T01:intron 30.0%
AAAAATAAGGGTGGAAATGG+TGG + Chr4:47470420-47470439 MsG0480020739.01.T01:CDS 35.0%
AAACACCTTAACAGCATCAA+AGG + Chr4:47470720-47470739 MsG0480020739.01.T01:CDS 35.0%
AAATTGGTACTACACTGTCA+AGG + Chr4:47471225-47471244 MsG0480020739.01.T01:CDS 35.0%
AACAACAACAACAACAATGG+AGG + Chr4:47470459-47470478 MsG0480020739.01.T01:CDS 35.0%
AAGAAGGAAGAGAACAACAA+AGG + Chr4:47470633-47470652 MsG0480020739.01.T01:CDS 35.0%
AAGGATAATGTGACTGTGAA+GGG + Chr4:47471425-47471444 MsG0480020739.01.T01:CDS 35.0%
ACATTGATGAAAACCCAGAT+CGG - Chr4:47470786-47470805 None:intergenic 35.0%
AGGAGGAGAAGTTAAGATAA+TGG + Chr4:47471634-47471653 MsG0480020739.01.T01:CDS 35.0%
AGTTCAACCAAAGAAAGACA+AGG + Chr4:47471511-47471530 MsG0480020739.01.T01:CDS 35.0%
CAACAACAATGAAGGAAACA+AGG + Chr4:47470500-47470519 MsG0480020739.01.T01:CDS 35.0%
CAAGAAGGATAACAACAAGA+AGG + Chr4:47471022-47471041 MsG0480020739.01.T01:CDS 35.0%
CAGAAGAAGAAAAATAAGGG+TGG + Chr4:47470411-47470430 MsG0480020739.01.T01:CDS 35.0%
GATGGTAATAACAATGAAGC+AGG + Chr4:47471614-47471633 MsG0480020739.01.T01:CDS 35.0%
TATATGGTTCAACAACCCTT+TGG + Chr4:47471659-47471678 MsG0480020739.01.T01:CDS 35.0%
TCAAACCTTTGATGCTGTTA+AGG - Chr4:47470728-47470747 None:intergenic 35.0%
TCATCACTAAACATTTGTGG+TGG - Chr4:47471770-47471789 None:intergenic 35.0%
! AAGATTGTCTCTCAGTTTTG+TGG - Chr4:47470958-47470977 None:intergenic 35.0%
! TTTGATGCTGTTAAGGTGTT+TGG - Chr4:47470721-47470740 None:intergenic 35.0%
!! AGATTGTCTCTCAGTTTTGT+GGG - Chr4:47470957-47470976 None:intergenic 35.0%
!! CTTCTTGTTGTTATCCTTCT+TGG - Chr4:47471024-47471043 None:intergenic 35.0%
AGGTAAGAAGAAGAACAAGG+GGG + Chr4:47471586-47471605 MsG0480020739.01.T01:CDS 40.0%
ATCACAGAAGCTTAAGAGGA+AGG + Chr4:47471481-47471500 MsG0480020739.01.T01:CDS 40.0%
CAAAGGCAAAAACAACGCTA+CGG + Chr4:47470650-47470669 MsG0480020739.01.T01:CDS 40.0%
CAACAATGGAGGAGATAAGA+AGG + Chr4:47470617-47470636 MsG0480020739.01.T01:CDS 40.0%
CAACCAAAGAAAGACAAGGA+AGG + Chr4:47471515-47471534 MsG0480020739.01.T01:CDS 40.0%
CACATGACAATGCAAGCATT+AGG - Chr4:47471797-47471816 None:intergenic 40.0%
GAAGGATAATGTGACTGTGA+AGG + Chr4:47471424-47471443 MsG0480020739.01.T01:CDS 40.0%
GAGGTAAGAAGAAGAACAAG+GGG + Chr4:47471585-47471604 MsG0480020739.01.T01:CDS 40.0%
GGAGGTAAGAAGAAGAACAA+GGG + Chr4:47471584-47471603 MsG0480020739.01.T01:CDS 40.0%
GGTAATAACAATGAAGCAGG+AGG + Chr4:47471617-47471636 MsG0480020739.01.T01:CDS 40.0%
TTGTTATCCTTCTTGGGAAG+TGG - Chr4:47471017-47471036 None:intergenic 40.0%
!! GATTGTCTCTCAGTTTTGTG+GGG - Chr4:47470956-47470975 None:intergenic 40.0%
!! GTTCAACAACCCTTTGGTTT+TGG + Chr4:47471665-47471684 MsG0480020739.01.T01:CDS 40.0%
!!! CAACCCTTTGGTTTTGGTTA+TGG + Chr4:47471671-47471690 MsG0480020739.01.T01:CDS 40.0%
AAGAAAGACAAGGAAGGTGG+TGG + Chr4:47471521-47471540 MsG0480020739.01.T01:CDS 45.0%
AAGGAAATGAAGGAGGAGGT+GGG + Chr4:47471561-47471580 MsG0480020739.01.T01:CDS 45.0%
AAGGAAGGAAATGAAGGAGG+AGG + Chr4:47471557-47471576 MsG0480020739.01.T01:CDS 45.0%
CAACAATGGAGGAGAGAAGA+AGG + Chr4:47470554-47470573 MsG0480020739.01.T01:CDS 45.0%
CATTTCACCACTTCCCAAGA+AGG + Chr4:47471007-47471026 MsG0480020739.01.T01:CDS 45.0%
CCAAAGAAAGACAAGGAAGG+TGG + Chr4:47471518-47471537 MsG0480020739.01.T01:CDS 45.0%
CCACCTTCCTTGTCTTTCTT+TGG - Chr4:47471521-47471540 None:intergenic 45.0%
GAAGCTTAAGAGGAAGGTTG+AGG + Chr4:47471487-47471506 MsG0480020739.01.T01:CDS 45.0%
GAGAAGGAAGGAAATGAAGG+AGG + Chr4:47471554-47471573 MsG0480020739.01.T01:CDS 45.0%
GGAGAGAAGAACAACAATGG+AGG + Chr4:47470606-47470625 MsG0480020739.01.T01:CDS 45.0%
GGAGGAGAGAAGAACAACAA+TGG + Chr4:47470603-47470622 MsG0480020739.01.T01:CDS 45.0%
GGGAGGTAAGAAGAAGAACA+AGG + Chr4:47471583-47471602 MsG0480020739.01.T01:CDS 45.0%
GGTAAGAAGAAGAACAAGGG+GGG + Chr4:47471587-47471606 MsG0480020739.01.T01:CDS 45.0%
GGTGAGAAGGAAGGAAATGA+AGG + Chr4:47471551-47471570 MsG0480020739.01.T01:CDS 45.0%
! TGTGACTGTGAAGGGTACAA+TGG + Chr4:47471433-47471452 MsG0480020739.01.T01:CDS 45.0%
! TTTTGTGGGGTCCACATTTC+CGG - Chr4:47470943-47470962 None:intergenic 45.0%
AAGAAGAAGAACAAGGGGGG+TGG + Chr4:47471590-47471609 MsG0480020739.01.T01:CDS 50.0%
ACCGGAAAAGTAACCGTCAC+CGG + Chr4:47470921-47470940 MsG0480020739.01.T01:CDS 50.0%
AGGAAATGAAGGAGGAGGTG+GGG + Chr4:47471562-47471581 MsG0480020739.01.T01:CDS 50.0%
AGTAACCGTCACCGGAAATG+TGG + Chr4:47470929-47470948 MsG0480020739.01.T01:CDS 50.0%
GAAGGAAATGAAGGAGGAGG+TGG + Chr4:47471560-47471579 MsG0480020739.01.T01:CDS 50.0%
GTGAAAGCAGAGAGTGAGAC+CGG + Chr4:47470903-47470922 MsG0480020739.01.T01:CDS 50.0%
! AAAGACAAGGAAGGTGGTGG+TGG + Chr4:47471524-47471543 MsG0480020739.01.T01:CDS 50.0%
!!! TCCGGTGACGGTTACTTTTC+CGG - Chr4:47470925-47470944 None:intergenic 50.0%
AAGAACAAGGGGGGTGGAGA+TGG + Chr4:47471596-47471615 MsG0480020739.01.T01:CDS 55.0%
GGAAATGAAGGAGGAGGTGG+GGG + Chr4:47471563-47471582 MsG0480020739.01.T01:CDS 55.0%
AATGAAGGAGGAGGTGGGGG+AGG + Chr4:47471566-47471585 MsG0480020739.01.T01:CDS 60.0%
GGGGTCCACATTTCCGGTGA+CGG - Chr4:47470937-47470956 None:intergenic 60.0%
!! AAGGAAGGTGGTGGTGGTGG+TGG + Chr4:47471530-47471549 MsG0480020739.01.T01:CDS 60.0%
!! GACAAGGAAGGTGGTGGTGG+TGG + Chr4:47471527-47471546 MsG0480020739.01.T01:CDS 60.0%
!! GGTGGTGGTGGTGAGAAGGA+AGG + Chr4:47471542-47471561 MsG0480020739.01.T01:CDS 60.0%
!! TGGTGGTGGTGGTGGTGAGA+AGG + Chr4:47471538-47471557 MsG0480020739.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 47470402 47471817 47470402 ID=MsG0480020739.01;Name=MsG0480020739.01
Chr4 mRNA 47470402 47471817 47470402 ID=MsG0480020739.01.T01;Parent=MsG0480020739.01;Name=MsG0480020739.01.T01;_AED=0.25;_eAED=0.26;_QI=0|0|0|1|1|1|4|0|350
Chr4 exon 47470402 47470741 47470402 ID=MsG0480020739.01.T01:exon:0;Parent=MsG0480020739.01.T01
Chr4 exon 47470892 47471097 47470892 ID=MsG0480020739.01.T01:exon:1;Parent=MsG0480020739.01.T01
Chr4 exon 47471204 47471288 47471204 ID=MsG0480020739.01.T01:exon:2;Parent=MsG0480020739.01.T01
Chr4 exon 47471396 47471817 47471396 ID=MsG0480020739.01.T01:exon:3;Parent=MsG0480020739.01.T01
Chr4 CDS 47470402 47470741 47470402 ID=MsG0480020739.01.T01:cds;Parent=MsG0480020739.01.T01
Chr4 CDS 47470892 47471097 47470892 ID=MsG0480020739.01.T01:cds;Parent=MsG0480020739.01.T01
Chr4 CDS 47471204 47471288 47471204 ID=MsG0480020739.01.T01:cds;Parent=MsG0480020739.01.T01
Chr4 CDS 47471396 47471817 47471396 ID=MsG0480020739.01.T01:cds;Parent=MsG0480020739.01.T01
Gene Sequence

>MsG0480020739.01.T01

TTGTTCTTACAGAAGAAGAAAAATAAGGGTGGAAATGGTGGAAATAATGCTGAAAACAACAACAACAACAACAATGGTGAAAACAAAGAAGAAAACAACAACAACAATGAAGGAAACAAGGAAGAAAACAACAACAACAACAACAACAACAACAACAATGGAGGAGAGAAGAAGGAAGAAAACAACAAAAACAACAACAATGGAGGAGAGAAGAACAACAATGGAGGAGATAAGAAGGAAGAGAACAACAAAGGCAAAAACAACGCTACGGTTTTGAAAGTTTATATGCATTGCGAAGGTTGCGCTAACAAAGTCACCAAACACCTTAACAGCATCAAAGGTGTTGATACGGTGAAAGCAGAGAGTGAGACCGGAAAAGTAACCGTCACCGGAAATGTGGACCCCACAAAACTGAGAGACAATCTTGCTGAGAAGATAAAGAAGAAAGTTGAACTCATTTCACCACTTCCCAAGAAGGATAACAACAAGAAGGAAAATGAACCAAACAAAAAATCTGATGAGAAGAAAAATGAAGACAAAAAAGAGTCAATTACCACTTCTGTTTTGAAATTGGTACTACACTGTCAAGGATGTATTGATAAGATTGGGAAAATTGTTATGAAAACTAAAGGAGTGCTTGAAATGAAAGTTGATAAAGAGAAGGATAATGTGACTGTGAAGGGTACAATGGATGTGAAAAAGCTAGTTGAGAATTTATCACAGAAGCTTAAGAGGAAGGTTGAGGTAGTTCAACCAAAGAAAGACAAGGAAGGTGGTGGTGGTGGTGGTGAGAAGGAAGGAAATGAAGGAGGAGGTGGGGGAGGTAAGAAGAAGAACAAGGGGGGTGGAGATGGTAATAACAATGAAGCAGGAGGAGAAGTTAAGATAATGGAGTATATGGTTCAACAACCCTTTGGTTTTGGTTATGGAAATGTAAATGTTGAAGGGTATAATGCTGCACAAGTCTACCAAGAGATGTTAAATATTCATATGCAAACACAACCACCACAAATGTTTAGTGATGAGAATCCTAATGCTTGCATTGTCATGTGA

Protein sequence

>MsG0480020739.01.T01

LFLQKKKNKGGNGGNNAENNNNNNNGENKEENNNNNEGNKEENNNNNNNNNNNGGEKKEENNKNNNNGGEKNNNGGDKKEENNKGKNNATVLKVYMHCEGCANKVTKHLNSIKGVDTVKAESETGKVTVTGNVDPTKLRDNLAEKIKKKVELISPLPKKDNNKKENEPNKKSDEKKNEDKKESITTSVLKLVLHCQGCIDKIGKIVMKTKGVLEMKVDKEKDNVTVKGTMDVKKLVENLSQKLKRKVEVVQPKKDKEGGGGGGEKEGNEGGGGGGKKKNKGGGDGNNNEAGGEVKIMEYMVQQPFGFGYGNVNVEGYNAAQVYQEMLNIHMQTQPPQMFSDENPNACIVM*