Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010539.01.T01 | ABD32785.1 | 94.872 | 468 | 20 | 1 | 1 | 464 | 1 | 468 | 0 | 915 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010539.01.T01 | Q9SJE8 | 47.215 | 413 | 194 | 3 | 23 | 430 | 3 | 396 | 1.16E-139 | 413 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010539.01.T01 | Q2HSH2 | 94.872 | 468 | 20 | 1 | 1 | 464 | 1 | 468 | 0.0 | 915 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048134.01 | MsG0280010539.01 | 0.826677 | 2.378486e-54 | 2.245878e-51 |
| MsG0180000497.01 | MsG0280010539.01 | 0.801923 | 7.160575e-49 | 3.461859e-46 |
| MsG0180000556.01 | MsG0280010539.01 | 0.800153 | 1.647303e-48 | 7.614790e-46 |
| MsG0180000985.01 | MsG0280010539.01 | 0.834328 | 3.194129e-56 | 3.778405e-53 |
| MsG0180001029.01 | MsG0280010539.01 | 0.817018 | 4.098629e-52 | 2.950853e-49 |
| MsG0180001800.01 | MsG0280010539.01 | 0.805576 | 1.248912e-49 | 6.630760e-47 |
| MsG0180003320.01 | MsG0280010539.01 | 0.808823 | 2.563069e-50 | 1.480305e-47 |
| MsG0180004962.01 | MsG0280010539.01 | 0.812510 | 4.088698e-51 | 2.604689e-48 |
| MsG0180005281.01 | MsG0280010539.01 | 0.824308 | 8.660944e-54 | 7.642289e-51 |
| MsG0280006546.01 | MsG0280010539.01 | 0.842552 | 2.412481e-58 | 3.670992e-55 |
| MsG0280007405.01 | MsG0280010539.01 | 0.821684 | 3.542568e-53 | 2.902123e-50 |
| MsG0280010539.01 | MsG0280010936.01 | 0.813563 | 2.402891e-51 | 1.574505e-48 |
| MsG0280010539.01 | MsG0380011701.01 | 0.810334 | 1.213829e-50 | 7.296544e-48 |
| MsG0280010539.01 | MsG0380015660.01 | 0.813262 | 2.797556e-51 | 1.818102e-48 |
| MsG0280010539.01 | MsG0380016299.01 | 0.809077 | 2.261317e-50 | 1.314956e-47 |
| MsG0280010539.01 | MsG0380016300.01 | 0.800356 | 1.497422e-48 | 6.958145e-46 |
| MsG0280010539.01 | MsG0380017694.01 | 0.807554 | 4.776153e-50 | 2.668227e-47 |
| MsG0280010539.01 | MsG0380017901.01 | 0.806702 | 7.234673e-50 | 3.953333e-47 |
| MsG0280010539.01 | MsG0480019146.01 | 0.811726 | 6.062300e-51 | 3.781272e-48 |
| MsG0280010539.01 | MsG0480019346.01 | 0.801521 | 8.656532e-49 | 4.142778e-46 |
| MsG0280010539.01 | MsG0480020904.01 | 0.814846 | 1.251406e-51 | 8.489694e-49 |
| MsG0280010539.01 | MsG0480021231.01 | 0.808719 | 2.697204e-50 | 1.553459e-47 |
| MsG0280010539.01 | MsG0480023432.01 | 0.802802 | 4.718804e-49 | 2.333146e-46 |
| MsG0280010539.01 | MsG0580024086.01 | 0.800035 | 1.740433e-48 | 8.021418e-46 |
| MsG0280010539.01 | MsG0580027751.01 | 0.827567 | 1.456637e-54 | 1.411430e-51 |
| MsG0280010539.01 | MsG0580027752.01 | 0.813789 | 2.142465e-51 | 1.412484e-48 |
| MsG0280010539.01 | MsG0580027753.01 | 0.802894 | 4.516847e-49 | 2.238466e-46 |
| MsG0280010539.01 | MsG0580029937.01 | 0.806238 | 9.065659e-50 | 4.895739e-47 |
| MsG0280010539.01 | MsG0680031200.01 | 0.834436 | 2.999965e-56 | 3.560109e-53 |
| MsG0280010539.01 | MsG0680032932.01 | 0.816310 | 5.905706e-52 | 4.170388e-49 |
| MsG0280010539.01 | MsG0780036649.01 | 0.813604 | 2.352727e-51 | 1.543421e-48 |
| MsG0280010539.01 | MsG0780036839.01 | 0.844393 | 7.774133e-59 | 1.253235e-55 |
| MsG0280010539.01 | MsG0780039373.01 | 0.818723 | 1.688909e-52 | 1.274178e-49 |
| MsG0280010539.01 | MsG0780040081.01 | 0.813547 | 2.421657e-51 | 1.586206e-48 |
| MsG0280010539.01 | MsG0780040498.01 | 0.814573 | 1.438526e-51 | 9.687559e-49 |
| MsG0280010539.01 | MsG0780040716.01 | 0.809786 | 1.593073e-50 | 9.440622e-48 |
| MsG0280010539.01 | MsG0780040719.01 | 0.840907 | 6.552371e-58 | 9.470267e-55 |
| MsG0280010539.01 | MsG0780040773.01 | 0.809688 | 1.672335e-50 | 9.884446e-48 |
| MsG0280010539.01 | MsG0780040977.01 | 0.812550 | 4.006962e-51 | 2.555318e-48 |
| MsG0280010539.01 | MsG0780040991.01 | 0.812869 | 3.412573e-51 | 2.194394e-48 |
| MsG0280010539.01 | MsG0780041248.01 | 0.847180 | 1.361260e-59 | 2.399674e-56 |
| MsG0280010539.01 | MsG0780041500.01 | 0.806018 | 1.008641e-49 | 5.416388e-47 |
| MsG0280010539.01 | MsG0880043217.01 | 0.801085 | 1.063267e-48 | 5.033077e-46 |
| MsG0280010539.01 | MsG0880044712.01 | 0.833281 | 5.834589e-56 | 6.687743e-53 |
| MsG0280010539.01 | MsG0880046870.01 | 0.815461 | 9.135525e-52 | 6.302810e-49 |
| MsG0280010539.01 | MsG0880046923.01 | 0.802374 | 5.783849e-49 | 2.828748e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010539.01.T01 | MTR_2g087288 | 91.880 | 468 | 18 | 2 | 1 | 464 | 1 | 452 | 0.0 | 877 |
| MsG0280010539.01.T01 | MTR_7g106260 | 47.495 | 459 | 217 | 4 | 15 | 468 | 24 | 463 | 2.35e-151 | 440 |
| MsG0280010539.01.T01 | MTR_4g051575 | 47.097 | 465 | 216 | 6 | 15 | 469 | 23 | 467 | 4.68e-144 | 421 |
| MsG0280010539.01.T01 | MTR_2g087285 | 43.488 | 453 | 228 | 5 | 15 | 464 | 19 | 446 | 9.30e-134 | 394 |
| MsG0280010539.01.T01 | MTR_1g077670 | 39.140 | 442 | 230 | 4 | 22 | 445 | 41 | 461 | 1.38e-107 | 328 |
| MsG0280010539.01.T01 | MTR_1g077660 | 40.498 | 442 | 231 | 6 | 33 | 462 | 46 | 467 | 9.05e-107 | 325 |
| MsG0280010539.01.T01 | MTR_4g051575 | 47.576 | 330 | 158 | 6 | 152 | 469 | 7 | 333 | 3.07e-98 | 299 |
| MsG0280010539.01.T01 | MTR_5g014310 | 42.169 | 332 | 169 | 4 | 34 | 360 | 58 | 371 | 2.45e-79 | 257 |
| MsG0280010539.01.T01 | MTR_1g115140 | 39.412 | 340 | 182 | 4 | 27 | 361 | 35 | 355 | 7.91e-78 | 253 |
| MsG0280010539.01.T01 | MTR_7g094770 | 35.732 | 403 | 233 | 7 | 38 | 435 | 61 | 442 | 6.93e-75 | 242 |
| MsG0280010539.01.T01 | MTR_1g115175 | 38.855 | 332 | 180 | 3 | 34 | 361 | 38 | 350 | 1.70e-73 | 241 |
| MsG0280010539.01.T01 | MTR_4g098570 | 35.613 | 424 | 240 | 7 | 33 | 449 | 49 | 446 | 1.04e-72 | 239 |
| MsG0280010539.01.T01 | MTR_1g115190 | 40.541 | 333 | 174 | 4 | 33 | 360 | 38 | 351 | 6.41e-68 | 227 |
| MsG0280010539.01.T01 | MTR_4g098610 | 36.111 | 360 | 198 | 5 | 33 | 387 | 49 | 381 | 5.28e-63 | 214 |
| MsG0280010539.01.T01 | MTR_8g104110 | 33.333 | 342 | 194 | 6 | 33 | 361 | 64 | 384 | 6.75e-59 | 204 |
| MsG0280010539.01.T01 | MTR_6g084680 | 35.593 | 354 | 198 | 5 | 19 | 361 | 70 | 404 | 1.36e-58 | 203 |
| MsG0280010539.01.T01 | MTR_8g104130 | 34.441 | 331 | 193 | 6 | 33 | 361 | 59 | 367 | 7.82e-56 | 195 |
| MsG0280010539.01.T01 | MTR_1g111250 | 32.967 | 364 | 199 | 8 | 13 | 361 | 58 | 391 | 2.40e-55 | 193 |
| MsG0280010539.01.T01 | MTR_8g104120 | 32.258 | 341 | 197 | 6 | 33 | 361 | 60 | 378 | 7.22e-52 | 184 |
| MsG0280010539.01.T01 | MTR_0710s0020 | 46.626 | 163 | 68 | 2 | 33 | 195 | 38 | 181 | 9.65e-32 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010539.01.T01 | AT1G08440 | 47.215 | 413 | 194 | 3 | 23 | 430 | 3 | 396 | 1.19e-140 | 413 |
| MsG0280010539.01.T01 | AT2G27240 | 47.255 | 419 | 195 | 4 | 23 | 435 | 3 | 401 | 9.36e-140 | 410 |
| MsG0280010539.01.T01 | AT1G08430 | 44.550 | 422 | 205 | 5 | 23 | 435 | 3 | 404 | 2.13e-137 | 405 |
| MsG0280010539.01.T01 | AT2G27240 | 44.719 | 445 | 194 | 5 | 23 | 435 | 3 | 427 | 7.40e-135 | 399 |
| MsG0280010539.01.T01 | AT3G11680 | 45.147 | 443 | 219 | 6 | 4 | 442 | 7 | 429 | 5.85e-124 | 370 |
| MsG0280010539.01.T01 | AT3G11680 | 45.147 | 443 | 219 | 6 | 4 | 442 | 9 | 431 | 6.29e-124 | 370 |
| MsG0280010539.01.T01 | AT4G00910 | 36.564 | 454 | 240 | 5 | 23 | 448 | 48 | 481 | 2.65e-99 | 307 |
| MsG0280010539.01.T01 | AT4G17970 | 39.062 | 384 | 206 | 6 | 19 | 396 | 25 | 386 | 4.96e-84 | 270 |
| MsG0280010539.01.T01 | AT5G46600 | 38.592 | 355 | 187 | 5 | 14 | 360 | 27 | 358 | 1.66e-76 | 249 |
| MsG0280010539.01.T01 | AT5G46610 | 38.109 | 349 | 188 | 4 | 19 | 360 | 27 | 354 | 1.19e-75 | 247 |
| MsG0280010539.01.T01 | AT5G46610 | 34.957 | 349 | 175 | 4 | 19 | 360 | 27 | 330 | 1.02e-63 | 215 |
| MsG0280010539.01.T01 | AT3G18440 | 30.928 | 388 | 229 | 9 | 26 | 395 | 72 | 438 | 2.73e-55 | 194 |
| MsG0280010539.01.T01 | AT1G18420 | 32.479 | 351 | 204 | 6 | 23 | 361 | 73 | 402 | 3.57e-55 | 194 |
| MsG0280010539.01.T01 | AT1G18420 | 32.647 | 340 | 196 | 6 | 34 | 361 | 1 | 319 | 4.23e-54 | 189 |
| MsG0280010539.01.T01 | AT1G25480 | 34.000 | 350 | 197 | 7 | 24 | 361 | 50 | 377 | 5.78e-53 | 187 |
| MsG0280010539.01.T01 | AT1G68600 | 34.012 | 344 | 193 | 7 | 30 | 361 | 45 | 366 | 9.83e-53 | 186 |
| MsG0280010539.01.T01 | AT2G17470 | 32.584 | 356 | 206 | 7 | 18 | 361 | 16 | 349 | 3.23e-52 | 185 |
| MsG0280010539.01.T01 | AT2G17470 | 32.584 | 356 | 206 | 7 | 18 | 361 | 38 | 371 | 4.45e-52 | 185 |
| MsG0280010539.01.T01 | AT5G46610 | 31.232 | 349 | 165 | 5 | 19 | 360 | 27 | 307 | 3.95e-47 | 170 |
| MsG0280010539.01.T01 | AT4G17585 | 51.562 | 64 | 31 | 0 | 19 | 82 | 25 | 88 | 3.75e-14 | 70.5 |
Find 76 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAATGAATGACCCTTCT+AGG | 0.191366 | 2:+71205370 | None:intergenic |
| ATAATTGAACCTATACTTCT+TGG | 0.239685 | 2:-71204589 | MsG0280010539.01.T01:CDS |
| GATATTGTTGCCAAGGATAT+TGG | 0.241933 | 2:+71203557 | None:intergenic |
| CATGTGATTACACTTGAATT+TGG | 0.263443 | 2:+71205472 | None:intergenic |
| AGTTGTTAAGGAAGCCATTA+AGG | 0.268610 | 2:+71203488 | None:intergenic |
| TATCGGATTGATGCCCTTAA+TGG | 0.282687 | 2:-71203502 | MsG0280010539.01.T01:CDS |
| TGTACAAAATTGACACATAA+TGG | 0.288079 | 2:-71202946 | MsG0280010539.01.T01:CDS |
| AAACCTCTCTATGATAGTTT+TGG | 0.300107 | 2:-71205301 | MsG0280010539.01.T01:CDS |
| TTGGCTGGTGTTCTTGGACT+TGG | 0.319754 | 2:-71204652 | MsG0280010539.01.T01:CDS |
| ATGAAGGCTAGATATGATTA+TGG | 0.325434 | 2:-71204406 | MsG0280010539.01.T01:CDS |
| GATAAGCACATTGCCTTGAT+AGG | 0.359354 | 2:+71203521 | None:intergenic |
| ATCAACTTGCCTAATGAGTT+TGG | 0.366652 | 2:-71205445 | MsG0280010539.01.T01:CDS |
| CTTGGAAAAGGTTTAAATAG+AGG | 0.383071 | 2:-71204688 | MsG0280010539.01.T01:CDS |
| TCATATCTAGCCTTCATTAG+AGG | 0.384146 | 2:+71204412 | None:intergenic |
| TTCTTGTGCCCTGTTTGGGC+TGG | 0.387615 | 2:-71204250 | MsG0280010539.01.T01:CDS |
| TATCAAGGCAATGTGCTTAT+CGG | 0.393258 | 2:-71203519 | MsG0280010539.01.T01:CDS |
| GATCATGGACCTTAGGTTTG+TGG | 0.393496 | 2:+71203209 | None:intergenic |
| TGGCAACAATATCAAAAGAT+TGG | 0.402570 | 2:-71203547 | MsG0280010539.01.T01:CDS |
| GTACCTTAGTGAAGTTGTTA+AGG | 0.410620 | 2:+71203476 | None:intergenic |
| TGGGAAAAGAAGATCCTAGA+AGG | 0.411010 | 2:-71205384 | MsG0280010539.01.T01:CDS |
| TAATTGACACTGCACAAGAT+AGG | 0.418272 | 2:-71204321 | MsG0280010539.01.T01:CDS |
| CTACTATCACTGCATGTTTG+TGG | 0.427671 | 2:+71203003 | None:intergenic |
| AAACTTGCCTACAGAGAATT+CGG | 0.429274 | 2:+71205237 | None:intergenic |
| TTGTGCCCTGTTTGGGCTGG+TGG | 0.433334 | 2:-71204247 | MsG0280010539.01.T01:CDS |
| ATTATGATTCCAAGAAGTAT+AGG | 0.433596 | 2:+71204580 | None:intergenic |
| AGATCACCACCAGCCCAAAC+AGG | 0.433992 | 2:+71204241 | None:intergenic |
| GTACAAAATTGACACATAAT+GGG | 0.436412 | 2:-71202945 | MsG0280010539.01.T01:CDS |
| GGCTAGATATGATTATGGTT+TGG | 0.440433 | 2:-71204401 | MsG0280010539.01.T01:CDS |
| GAATCTGAAACGACCATGGC+AGG | 0.446207 | 2:+71203579 | None:intergenic |
| GATGTTGCAGCTGAAAGAAT+TGG | 0.448481 | 2:-71205404 | MsG0280010539.01.T01:CDS |
| GATTACACTTGAATTTGGTT+CGG | 0.456837 | 2:+71205477 | None:intergenic |
| GTTGTTAAGGAAGCCATTAA+GGG | 0.460812 | 2:+71203489 | None:intergenic |
| AGTAGCATTTGCTATTACAT+TGG | 0.462751 | 2:-71205344 | MsG0280010539.01.T01:CDS |
| GTTTCAGATTCCAATATCCT+TGG | 0.467661 | 2:-71203567 | MsG0280010539.01.T01:CDS |
| ATTAAGATGAGCATAGAAAC+AGG | 0.468944 | 2:-71203321 | MsG0280010539.01.T01:CDS |
| AATGAAGCCACGGTTACAAC+AGG | 0.480765 | 2:+71203144 | None:intergenic |
| TTTGAATTATTTCAGCTGCA+GGG | 0.486846 | 2:-71204456 | MsG0280010539.01.T01:intron |
| TCGATTTATACCTCTAATGA+AGG | 0.491939 | 2:-71204422 | MsG0280010539.01.T01:CDS |
| CATGATCAAAACAAAATTGT+GGG | 0.502020 | 2:-71203193 | MsG0280010539.01.T01:CDS |
| ATCTTAGCACCAAACTCATT+AGG | 0.508028 | 2:+71205436 | None:intergenic |
| TCTATGCTCATCTTAATGCA+TGG | 0.508658 | 2:+71203327 | None:intergenic |
| GTGCAGTGTCAATTATCTCA+TGG | 0.511026 | 2:+71204329 | None:intergenic |
| GCAGGAGCAACACTTGGAAA+AGG | 0.511844 | 2:-71204700 | MsG0280010539.01.T01:intron |
| TGGACTTGGATCTTATTACA+TGG | 0.514673 | 2:-71204638 | MsG0280010539.01.T01:CDS |
| TGGTGGATTAATTTCTGTGT+TGG | 0.515117 | 2:-71204281 | MsG0280010539.01.T01:CDS |
| GTAACAACAATTCTAGTTGG+TGG | 0.515822 | 2:-71204298 | MsG0280010539.01.T01:CDS |
| CTTCCTTAACAACTTCACTA+AGG | 0.516652 | 2:-71203479 | MsG0280010539.01.T01:intron |
| ATGTTGCAGCTGAAAGAATT+GGG | 0.527158 | 2:-71205403 | MsG0280010539.01.T01:CDS |
| TGAGTTTCTGCTGAGGTTGG+TGG | 0.528304 | 2:+71203255 | None:intergenic |
| AAAAGATTGGAAACCTATCA+AGG | 0.530845 | 2:-71203534 | MsG0280010539.01.T01:CDS |
| AGGGTAACAACAATTCTAGT+TGG | 0.536338 | 2:-71204301 | MsG0280010539.01.T01:CDS |
| CCATGATCAAAACAAAATTG+TGG | 0.536457 | 2:-71203194 | MsG0280010539.01.T01:CDS |
| AATTGACACTGCACAAGATA+GGG | 0.540293 | 2:-71204320 | MsG0280010539.01.T01:CDS |
| GGAAGACACAAATTTGTTTG+AGG | 0.543623 | 2:-71203172 | MsG0280010539.01.T01:CDS |
| AAAACAAGTCGAAGATAACT+TGG | 0.544545 | 2:-71203976 | MsG0280010539.01.T01:intron |
| CTTAGCAAAATTTAAGAACA+AGG | 0.557015 | 2:-71203061 | MsG0280010539.01.T01:CDS |
| TTGAATTATTTCAGCTGCAG+GGG | 0.563412 | 2:-71204455 | MsG0280010539.01.T01:intron |
| GTTGTCTCCGAATTCTCTGT+AGG | 0.565117 | 2:-71205244 | MsG0280010539.01.T01:CDS |
| GCACATGCAGGAGCAACACT+TGG | 0.568214 | 2:-71204706 | MsG0280010539.01.T01:intron |
| ATGTGAGTTTCTGCTGAGGT+TGG | 0.568552 | 2:+71203252 | None:intergenic |
| GCAAGGTGGGAACCCTGCCA+TGG | 0.570019 | 2:-71203592 | MsG0280010539.01.T01:CDS |
| TCAAATAAATCATTTATGCA+AGG | 0.574471 | 2:-71204020 | MsG0280010539.01.T01:CDS |
| ATGGTTCATACAATTTCAAG+AGG | 0.574977 | 2:-71204619 | MsG0280010539.01.T01:CDS |
| AGATTTATGCCACAAACCTA+AGG | 0.581612 | 2:-71203218 | MsG0280010539.01.T01:CDS |
| ATCAAGCAATAATGAAGCCA+CGG | 0.596047 | 2:+71203134 | None:intergenic |
| TTAATTATAATAACATGTTG+TGG | 0.607316 | 2:+71202976 | None:intergenic |
| GGGAAAAGAAGATCCTAGAA+GGG | 0.628854 | 2:-71205383 | MsG0280010539.01.T01:CDS |
| GATGAGCATAGAAACAGGAA+AGG | 0.631774 | 2:-71203316 | MsG0280010539.01.T01:CDS |
| CAAACATGCAGTGATAGTAG+TGG | 0.633845 | 2:-71203000 | MsG0280010539.01.T01:CDS |
| GAACCAAAACTATCATAGAG+AGG | 0.635110 | 2:+71205298 | None:intergenic |
| TGCAATGTGAGTTTCTGCTG+AGG | 0.637883 | 2:+71203248 | None:intergenic |
| TGATTCTGCAAGTTTCTCAG+TGG | 0.649200 | 2:+71203101 | None:intergenic |
| ATTGGAATCTGAAACGACCA+TGG | 0.657737 | 2:+71203575 | None:intergenic |
| AATCTGAAACGACCATGGCA+GGG | 0.657967 | 2:+71203580 | None:intergenic |
| GGTTGTTCCTGTTGTAACCG+TGG | 0.667584 | 2:-71203151 | MsG0280010539.01.T01:CDS |
| GATCACCACCAGCCCAAACA+GGG | 0.679414 | 2:+71204242 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATATTACATAGAAAAAA+TGG | - | Chr2:71203352-71203371 | MsG0280010539.01.T01:CDS | 10.0% |
| !!! | AATTTACAATAACATAATTT+TGG | + | Chr2:71204484-71204503 | None:intergenic | 10.0% |
| !! | TTAATTATAATAACATGTTG+TGG | + | Chr2:71205447-71205466 | None:intergenic | 15.0% |
| !!! | AATTTTGTAAATTGTGATTA+TGG | - | Chr2:71204267-71204286 | MsG0280010539.01.T01:CDS | 15.0% |
| !! | ATATATTGAGAAATATTCCA+TGG | + | Chr2:71204533-71204552 | None:intergenic | 20.0% |
| !! | ATCAATATCAATCCAAAAAA+CGG | - | Chr2:71205140-71205159 | MsG0280010539.01.T01:intron | 20.0% |
| !! | ATTAATTCTTGGAAAATTGT+AGG | - | Chr2:71204337-71204356 | MsG0280010539.01.T01:CDS | 20.0% |
| !! | TCAAAAAACATTGAAAAACT+TGG | - | Chr2:71204215-71204234 | MsG0280010539.01.T01:CDS | 20.0% |
| !! | TCAAATAAATCATTTATGCA+AGG | - | Chr2:71204400-71204419 | MsG0280010539.01.T01:CDS | 20.0% |
| !! | TGTTGAAATTGATTAATTCT+TGG | - | Chr2:71204326-71204345 | MsG0280010539.01.T01:CDS | 20.0% |
| !!! | ATTAGTTTAATACCTTTTGT+AGG | - | Chr2:71204797-71204816 | MsG0280010539.01.T01:intron | 20.0% |
| !!! | GAATAAATAGTATTTTGTAG+AGG | - | Chr2:71203588-71203607 | MsG0280010539.01.T01:CDS | 20.0% |
| !!! | TATTTGATAATTTCACTAGT+AGG | - | Chr2:71203898-71203917 | MsG0280010539.01.T01:intron | 20.0% |
| !!! | TTATTCTATGTTTCTACAAT+CGG | + | Chr2:71203574-71203593 | None:intergenic | 20.0% |
| ! | ATAATTGAACCTATACTTCT+TGG | - | Chr2:71203831-71203850 | MsG0280010539.01.T01:intron | 25.0% |
| ! | ATCTTAATTCCAAAAATGCA+TGG | - | Chr2:71203449-71203468 | MsG0280010539.01.T01:intron | 25.0% |
| ! | CATGATCAAAACAAAATTGT+GGG | - | Chr2:71205227-71205246 | MsG0280010539.01.T01:CDS | 25.0% |
| ! | CTTAGCAAAATTTAAGAACA+AGG | - | Chr2:71205359-71205378 | MsG0280010539.01.T01:CDS | 25.0% |
| ! | GTACAAAATTGACACATAAT+GGG | - | Chr2:71205475-71205494 | MsG0280010539.01.T01:CDS | 25.0% |
| ! | TAGTAGACACTAAACTTAAA+TGG | + | Chr2:71203255-71203274 | None:intergenic | 25.0% |
| ! | TCTACTACGATTTACATATA+CGG | - | Chr2:71204717-71204736 | MsG0280010539.01.T01:intron | 25.0% |
| ! | TGTACAAAATTGACACATAA+TGG | - | Chr2:71205474-71205493 | MsG0280010539.01.T01:CDS | 25.0% |
| !! | AAGTTTAGTAGAGTATTTCT+TGG | - | Chr2:71204992-71205011 | MsG0280010539.01.T01:intron | 25.0% |
| !! | ATTATGATTCCAAGAAGTAT+AGG | + | Chr2:71203843-71203862 | None:intergenic | 25.0% |
| !! | CTTGTTCTTAAATTTTGCTA+AGG | + | Chr2:71205361-71205380 | None:intergenic | 25.0% |
| !! | GTTTATCTTGACATTTTGTT+TGG | - | Chr2:71204046-71204065 | MsG0280010539.01.T01:CDS | 25.0% |
| !! | TTATGTGTCAATTTTGTACA+AGG | + | Chr2:71205474-71205493 | None:intergenic | 25.0% |
| !!! | ACTTTTTTTATAGACACCAA+AGG | - | Chr2:71205047-71205066 | MsG0280010539.01.T01:intron | 25.0% |
| !!! | ATTTTGCTTTTGATTTCCTT+TGG | + | Chr2:71205066-71205085 | None:intergenic | 25.0% |
| !!! | GTTTTAATCATGCATGTTTT+TGG | - | Chr2:71203224-71203243 | MsG0280010539.01.T01:CDS | 25.0% |
| !!! | GTTTTGTTTGTTGTTTTCTT+TGG | - | Chr2:71203202-71203221 | MsG0280010539.01.T01:CDS | 25.0% |
| !!! | TTTTTCTCTAGTCTTAACTT+TGG | - | Chr2:71203277-71203296 | MsG0280010539.01.T01:CDS | 25.0% |
| AAAACAAGTCGAAGATAACT+TGG | - | Chr2:71204444-71204463 | MsG0280010539.01.T01:CDS | 30.0% | |
| AAAAGATTGGAAACCTATCA+AGG | - | Chr2:71204886-71204905 | MsG0280010539.01.T01:intron | 30.0% | |
| ATGAAGGCTAGATATGATTA+TGG | - | Chr2:71204014-71204033 | MsG0280010539.01.T01:CDS | 30.0% | |
| ATGGTTCATACAATTTCAAG+AGG | - | Chr2:71203801-71203820 | MsG0280010539.01.T01:intron | 30.0% | |
| ATTAAGATGAGCATAGAAAC+AGG | - | Chr2:71205099-71205118 | MsG0280010539.01.T01:intron | 30.0% | |
| CATGTGATTACACTTGAATT+TGG | + | Chr2:71202951-71202970 | None:intergenic | 30.0% | |
| CCATGATCAAAACAAAATTG+TGG | - | Chr2:71205226-71205245 | MsG0280010539.01.T01:CDS | 30.0% | |
| CTACTACGATTTACATATAC+GGG | - | Chr2:71204718-71204737 | MsG0280010539.01.T01:intron | 30.0% | |
| CTTGGAAAAGGTTTAAATAG+AGG | - | Chr2:71203732-71203751 | MsG0280010539.01.T01:intron | 30.0% | |
| GATTACACTTGAATTTGGTT+CGG | + | Chr2:71202946-71202965 | None:intergenic | 30.0% | |
| TCAAATATGTTGAAAAGTCG+TGG | + | Chr2:71204689-71204708 | None:intergenic | 30.0% | |
| TCATCAAATCAAAATGTCCA+TGG | - | Chr2:71204513-71204532 | MsG0280010539.01.T01:intron | 30.0% | |
| TCGATTTATACCTCTAATGA+AGG | - | Chr2:71203998-71204017 | MsG0280010539.01.T01:CDS | 30.0% | |
| TGGCAACAATATCAAAAGAT+TGG | - | Chr2:71204873-71204892 | MsG0280010539.01.T01:intron | 30.0% | |
| TTAATTCCAAAAATGCATGG+TGG | - | Chr2:71203452-71203471 | MsG0280010539.01.T01:intron | 30.0% | |
| TTGCAAAATTGACCTACAAA+AGG | + | Chr2:71204812-71204831 | None:intergenic | 30.0% | |
| TTTGAATTATTTCAGCTGCA+GGG | - | Chr2:71203964-71203983 | MsG0280010539.01.T01:intron | 30.0% | |
| ! | AAACCTCTCTATGATAGTTT+TGG | - | Chr2:71203119-71203138 | MsG0280010539.01.T01:CDS | 30.0% |
| ! | AAACTTGGCAACTTTTTAGA+AGG | - | Chr2:71204230-71204249 | MsG0280010539.01.T01:CDS | 30.0% |
| ! | ATCTTTTGATATTGTTGCCA+AGG | + | Chr2:71204873-71204892 | None:intergenic | 30.0% |
| ! | GTTCTTAAATTTTGCTAAGG+TGG | + | Chr2:71205358-71205377 | None:intergenic | 30.0% |
| ! | TAGAGGTTTAGCAACATTTT+TGG | - | Chr2:71203749-71203768 | MsG0280010539.01.T01:intron | 30.0% |
| ! | TCTTGGAAAATTGTAGGTTT+TGG | - | Chr2:71204343-71204362 | MsG0280010539.01.T01:CDS | 30.0% |
| ! | TTTTGAATTATTTCAGCTGC+AGG | - | Chr2:71203963-71203982 | MsG0280010539.01.T01:intron | 30.0% |
| ! | TTTTGTAGGTCAATTTTGCA+AGG | - | Chr2:71204811-71204830 | MsG0280010539.01.T01:intron | 30.0% |
| !! | AGTAGCATTTGCTATTACAT+TGG | - | Chr2:71203076-71203095 | MsG0280010539.01.T01:CDS | 30.0% |
| !! | ATGCGAACTTGAATTTTAAC+TGG | - | Chr2:71203668-71203687 | MsG0280010539.01.T01:intron | 30.0% |
| !! | CATATTATTTTGCCACTTGT+TGG | - | Chr2:71203312-71203331 | MsG0280010539.01.T01:CDS | 30.0% |
| !!! | ATCGGTCATAGATTTTTTTG+TGG | + | Chr2:71203556-71203575 | None:intergenic | 30.0% |
| !!! | CCACAATTTTGTTTTGATCA+TGG | + | Chr2:71205229-71205248 | None:intergenic | 30.0% |
| !!! | GGTTTTGGAGATGAATATTT+TGG | - | Chr2:71204358-71204377 | MsG0280010539.01.T01:CDS | 30.0% |
| AAACTTGCCTACAGAGAATT+CGG | + | Chr2:71203186-71203205 | None:intergenic | 35.0% | |
| AAAGAATGAATGACCCTTCT+AGG | + | Chr2:71203053-71203072 | None:intergenic | 35.0% | |
| AATTGACACTGCACAAGATA+GGG | - | Chr2:71204100-71204119 | MsG0280010539.01.T01:intron | 35.0% | |
| AGACATGTCAATGTTCAACT+AGG | + | Chr2:71204587-71204606 | None:intergenic | 35.0% | |
| AGATTTATGCCACAAACCTA+AGG | - | Chr2:71205202-71205221 | MsG0280010539.01.T01:CDS | 35.0% | |
| AGGGTAACAACAATTCTAGT+TGG | - | Chr2:71204119-71204138 | MsG0280010539.01.T01:intron | 35.0% | |
| AGTTGTTAAGGAAGCCATTA+AGG | + | Chr2:71204935-71204954 | None:intergenic | 35.0% | |
| ATCAACTTGCCTAATGAGTT+TGG | - | Chr2:71202975-71202994 | MsG0280010539.01.T01:CDS | 35.0% | |
| ATCAAGCAATAATGAAGCCA+CGG | + | Chr2:71205289-71205308 | None:intergenic | 35.0% | |
| ATCTTAGCACCAAACTCATT+AGG | + | Chr2:71202987-71203006 | None:intergenic | 35.0% | |
| ATGTTGCAGCTGAAAGAATT+GGG | - | Chr2:71203017-71203036 | MsG0280010539.01.T01:CDS | 35.0% | |
| CTTCCTTAACAACTTCACTA+AGG | - | Chr2:71204941-71204960 | MsG0280010539.01.T01:intron | 35.0% | |
| CTTGTTGGATCAAGATCATA+CGG | - | Chr2:71203327-71203346 | MsG0280010539.01.T01:CDS | 35.0% | |
| GAACCAAAACTATCATAGAG+AGG | + | Chr2:71203125-71203144 | None:intergenic | 35.0% | |
| GATATTGTTGCCAAGGATAT+TGG | + | Chr2:71204866-71204885 | None:intergenic | 35.0% | |
| GGCTAGATATGATTATGGTT+TGG | - | Chr2:71204019-71204038 | MsG0280010539.01.T01:CDS | 35.0% | |
| GTACCTTAGTGAAGTTGTTA+AGG | + | Chr2:71204947-71204966 | None:intergenic | 35.0% | |
| GTTGTTAAGGAAGCCATTAA+GGG | + | Chr2:71204934-71204953 | None:intergenic | 35.0% | |
| GTTTCAGATTCCAATATCCT+TGG | - | Chr2:71204853-71204872 | MsG0280010539.01.T01:intron | 35.0% | |
| TAAGTCAGAGTAGACAAAGA+CGG | + | Chr2:71204774-71204793 | None:intergenic | 35.0% | |
| TAATTGACACTGCACAAGAT+AGG | - | Chr2:71204099-71204118 | MsG0280010539.01.T01:intron | 35.0% | |
| TATCAAGGCAATGTGCTTAT+CGG | - | Chr2:71204901-71204920 | MsG0280010539.01.T01:intron | 35.0% | |
| TATGATCTTGATCCAACAAG+TGG | + | Chr2:71203327-71203346 | None:intergenic | 35.0% | |
| TCTATGCTCATCTTAATGCA+TGG | + | Chr2:71205096-71205115 | None:intergenic | 35.0% | |
| TGGACTTGGATCTTATTACA+TGG | - | Chr2:71203782-71203801 | MsG0280010539.01.T01:intron | 35.0% | |
| TTGAATTATTTCAGCTGCAG+GGG | - | Chr2:71203965-71203984 | MsG0280010539.01.T01:intron | 35.0% | |
| TTGTGGACATACGTAAATGT+TGG | + | Chr2:71203539-71203558 | None:intergenic | 35.0% | |
| TTTGATTATGTTGCACATGC+AGG | - | Chr2:71203702-71203721 | MsG0280010539.01.T01:intron | 35.0% | |
| ! | GGAAGACACAAATTTGTTTG+AGG | - | Chr2:71205248-71205267 | MsG0280010539.01.T01:CDS | 35.0% |
| ! | GTAACAACAATTCTAGTTGG+TGG | - | Chr2:71204122-71204141 | MsG0280010539.01.T01:intron | 35.0% |
| ! | GTCTCCAATTTAGTTCATGT+GGG | - | Chr2:71204603-71204622 | MsG0280010539.01.T01:CDS | 35.0% |
| ! | TCATATCTAGCCTTCATTAG+AGG | + | Chr2:71204011-71204030 | None:intergenic | 35.0% |
| ! | TCTCCAATTTAGTTCATGTG+GGG | - | Chr2:71204604-71204623 | MsG0280010539.01.T01:CDS | 35.0% |
| ! | TGTCTCCAATTTAGTTCATG+TGG | - | Chr2:71204602-71204621 | MsG0280010539.01.T01:CDS | 35.0% |
| !! | TGGTGGATTAATTTCTGTGT+TGG | - | Chr2:71204139-71204158 | MsG0280010539.01.T01:intron | 35.0% |
| !!! | CGAACTTGAATTTTAACTGG+TGG | - | Chr2:71203671-71203690 | MsG0280010539.01.T01:intron | 35.0% |
| !!! | TATTTTGGAACACTAGATGC+TGG | - | Chr2:71204373-71204392 | MsG0280010539.01.T01:CDS | 35.0% |
| !!! | TTGTTTTGATCATGGACCTT+AGG | + | Chr2:71205221-71205240 | None:intergenic | 35.0% |
| !!! | TTTTGGTTCTTCTGCAATGT+GGG | - | Chr2:71203136-71203155 | MsG0280010539.01.T01:CDS | 35.0% |
| AGTCCCCACATGAACTAAAT+TGG | + | Chr2:71204610-71204629 | None:intergenic | 40.0% | |
| CAAACATGCAGTGATAGTAG+TGG | - | Chr2:71205420-71205439 | MsG0280010539.01.T01:CDS | 40.0% | |
| CTACTATCACTGCATGTTTG+TGG | + | Chr2:71205420-71205439 | None:intergenic | 40.0% | |
| GATAAGCACATTGCCTTGAT+AGG | + | Chr2:71204902-71204921 | None:intergenic | 40.0% | |
| GATGAGCATAGAAACAGGAA+AGG | - | Chr2:71205104-71205123 | MsG0280010539.01.T01:intron | 40.0% | |
| GATGTTGCAGCTGAAAGAAT+TGG | - | Chr2:71203016-71203035 | MsG0280010539.01.T01:CDS | 40.0% | |
| GGGAAAAGAAGATCCTAGAA+GGG | - | Chr2:71203037-71203056 | MsG0280010539.01.T01:CDS | 40.0% | |
| GTGCAGTGTCAATTATCTCA+TGG | + | Chr2:71204094-71204113 | None:intergenic | 40.0% | |
| TATCGGATTGATGCCCTTAA+TGG | - | Chr2:71204918-71204937 | MsG0280010539.01.T01:intron | 40.0% | |
| TCACGCATTCAACACATTGA+TGG | + | Chr2:71203401-71203420 | None:intergenic | 40.0% | |
| TGATTCTGCAAGTTTCTCAG+TGG | + | Chr2:71205322-71205341 | None:intergenic | 40.0% | |
| TGGGAAAAGAAGATCCTAGA+AGG | - | Chr2:71203036-71203055 | MsG0280010539.01.T01:CDS | 40.0% | |
| ! | AAGTCGAAGATAACTTGGTG+AGG | - | Chr2:71204449-71204468 | MsG0280010539.01.T01:intron | 40.0% |
| ! | ACATTTTCTTGTGCCCTGTT+TGG | - | Chr2:71204165-71204184 | MsG0280010539.01.T01:intron | 40.0% |
| ! | ATTGGAATCTGAAACGACCA+TGG | + | Chr2:71204848-71204867 | None:intergenic | 40.0% |
| ! | CATTTTCTTGTGCCCTGTTT+GGG | - | Chr2:71204166-71204185 | MsG0280010539.01.T01:intron | 40.0% |
| ! | GTAGGTCAATTTTGCAAGGT+GGG | - | Chr2:71204815-71204834 | MsG0280010539.01.T01:intron | 40.0% |
| ! | GTGTCAATTTTGTACAAGGC+TGG | + | Chr2:71205470-71205489 | None:intergenic | 40.0% |
| ! | TAAGTGCCACCATGCATTTT+TGG | + | Chr2:71203461-71203480 | None:intergenic | 40.0% |
| ! | TGTAGGTCAATTTTGCAAGG+TGG | - | Chr2:71204814-71204833 | MsG0280010539.01.T01:intron | 40.0% |
| !!! | ACATTTTTGGCTGGTGTTCT+TGG | - | Chr2:71203762-71203781 | MsG0280010539.01.T01:intron | 40.0% |
| !!! | GGTTTAGCAACATTTTTGGC+TGG | - | Chr2:71203753-71203772 | MsG0280010539.01.T01:intron | 40.0% |
| !!! | GTTTTGGTTCTTCTGCAATG+TGG | - | Chr2:71203135-71203154 | MsG0280010539.01.T01:CDS | 40.0% |
| AATGAAGCCACGGTTACAAC+AGG | + | Chr2:71205279-71205298 | None:intergenic | 45.0% | |
| ATGTGAGTTTCTGCTGAGGT+TGG | + | Chr2:71205171-71205190 | None:intergenic | 45.0% | |
| GATCATGGACCTTAGGTTTG+TGG | + | Chr2:71205214-71205233 | None:intergenic | 45.0% | |
| GTTGTCTCCGAATTCTCTGT+AGG | - | Chr2:71203176-71203195 | MsG0280010539.01.T01:CDS | 45.0% | |
| TGCAATGTGAGTTTCTGCTG+AGG | + | Chr2:71205175-71205194 | None:intergenic | 45.0% | |
| ! | AATCTGAAACGACCATGGCA+GGG | + | Chr2:71204843-71204862 | None:intergenic | 45.0% |
| !! | TTTTTAGAAGGTGCGCAAGC+AGG | - | Chr2:71204242-71204261 | MsG0280010539.01.T01:CDS | 45.0% |
| !!! | AGGTTGGTGGAACCGTTTTT+TGG | + | Chr2:71205155-71205174 | None:intergenic | 45.0% |
| !! | AAAAAAAATAAAAATTGTAT+TGG | + | Chr2:71203945-71203964 | None:intergenic | 5.0% |
| !! | TAAATAAATACTAAAAAAAA+TGG | + | Chr2:71203630-71203649 | None:intergenic | 5.0% |
| GCAGGAGCAACACTTGGAAA+AGG | - | Chr2:71203720-71203739 | MsG0280010539.01.T01:intron | 50.0% | |
| GGTTGTTCCTGTTGTAACCG+TGG | - | Chr2:71205269-71205288 | MsG0280010539.01.T01:CDS | 50.0% | |
| TGAGTTTCTGCTGAGGTTGG+TGG | + | Chr2:71205168-71205187 | None:intergenic | 50.0% | |
| TTGGCTGGTGTTCTTGGACT+TGG | - | Chr2:71203768-71203787 | MsG0280010539.01.T01:intron | 50.0% | |
| ! | GAATCTGAAACGACCATGGC+AGG | + | Chr2:71204844-71204863 | None:intergenic | 50.0% |
| AGATCACCACCAGCCCAAAC+AGG | + | Chr2:71204182-71204201 | None:intergenic | 55.0% | |
| GATCACCACCAGCCCAAACA+GGG | + | Chr2:71204181-71204200 | None:intergenic | 55.0% | |
| GCACATGCAGGAGCAACACT+TGG | - | Chr2:71203714-71203733 | MsG0280010539.01.T01:intron | 55.0% | |
| TTCTTGTGCCCTGTTTGGGC+TGG | - | Chr2:71204170-71204189 | MsG0280010539.01.T01:intron | 55.0% | |
| ! | TTGTGCCCTGTTTGGGCTGG+TGG | - | Chr2:71204173-71204192 | MsG0280010539.01.T01:intron | 60.0% |
| GCAAGGTGGGAACCCTGCCA+TGG | - | Chr2:71204828-71204847 | MsG0280010539.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 71202936 | 71205506 | 71202936 | ID=MsG0280010539.01;Name=MsG0280010539.01 |
| Chr2 | mRNA | 71202936 | 71205506 | 71202936 | ID=MsG0280010539.01.T01;Parent=MsG0280010539.01;Name=MsG0280010539.01.T01;_AED=0.40;_eAED=0.41;_QI=0|0|0|1|1|1|6|0|476 |
| Chr2 | exon | 71205197 | 71205506 | 71205197 | ID=MsG0280010539.01.T01:exon:6739;Parent=MsG0280010539.01.T01 |
| Chr2 | exon | 71204569 | 71204718 | 71204569 | ID=MsG0280010539.01.T01:exon:6738;Parent=MsG0280010539.01.T01 |
| Chr2 | exon | 71204191 | 71204463 | 71204191 | ID=MsG0280010539.01.T01:exon:6737;Parent=MsG0280010539.01.T01 |
| Chr2 | exon | 71203977 | 71204083 | 71203977 | ID=MsG0280010539.01.T01:exon:6736;Parent=MsG0280010539.01.T01 |
| Chr2 | exon | 71203480 | 71203623 | 71203480 | ID=MsG0280010539.01.T01:exon:6735;Parent=MsG0280010539.01.T01 |
| Chr2 | exon | 71202936 | 71203382 | 71202936 | ID=MsG0280010539.01.T01:exon:6734;Parent=MsG0280010539.01.T01 |
| Chr2 | CDS | 71205197 | 71205506 | 71205197 | ID=MsG0280010539.01.T01:cds;Parent=MsG0280010539.01.T01 |
| Chr2 | CDS | 71204569 | 71204718 | 71204569 | ID=MsG0280010539.01.T01:cds;Parent=MsG0280010539.01.T01 |
| Chr2 | CDS | 71204191 | 71204463 | 71204191 | ID=MsG0280010539.01.T01:cds;Parent=MsG0280010539.01.T01 |
| Chr2 | CDS | 71203977 | 71204083 | 71203977 | ID=MsG0280010539.01.T01:cds;Parent=MsG0280010539.01.T01 |
| Chr2 | CDS | 71203480 | 71203623 | 71203480 | ID=MsG0280010539.01.T01:cds;Parent=MsG0280010539.01.T01 |
| Chr2 | CDS | 71202936 | 71203382 | 71202936 | ID=MsG0280010539.01.T01:cds;Parent=MsG0280010539.01.T01 |
| Gene Sequence |
| Protein sequence |
