AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780035992.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780035992.01.T01 MTR_7g006540 98.428 636 10 0 1 636 1 636 0.0 1303
MsG0780035992.01.T01 MTR_7g067010 41.997 581 311 12 38 612 1 561 1.61e-147 439
MsG0780035992.01.T01 MTR_4g015080 41.812 574 310 11 44 612 17 571 7.16e-147 438
MsG0780035992.01.T01 MTR_3g462710 41.516 554 306 7 63 612 24 563 1.15e-142 427
MsG0780035992.01.T01 MTR_3g112470 38.860 579 329 8 51 627 12 567 1.77e-137 414
MsG0780035992.01.T01 MTR_3g112460 37.801 582 337 8 51 630 12 570 7.98e-134 404
MsG0780035992.01.T01 MTR_3g112450 37.997 579 336 7 51 627 12 569 6.18e-129 392
MsG0780035992.01.T01 MTR_7g111260 37.071 553 324 7 63 614 19 548 5.07e-121 372
MsG0780035992.01.T01 MTR_7g098200 35.966 595 366 9 44 637 12 592 6.30e-120 369
MsG0780035992.01.T01 MTR_7g098180 36.535 583 354 9 31 611 1 569 1.16e-118 366
MsG0780035992.01.T01 MTR_7g098040 36.529 605 361 13 34 631 6 594 3.15e-118 365
MsG0780035992.01.T01 MTR_1g075440 35.593 590 356 11 44 630 11 579 3.76e-118 364
MsG0780035992.01.T01 MTR_7g098160 35.314 606 375 12 34 637 5 595 3.85e-118 365
MsG0780035992.01.T01 MTR_1g085090 35.740 554 332 7 63 615 19 549 8.24e-116 359
MsG0780035992.01.T01 MTR_7g098230 36.155 567 341 9 70 633 33 581 1.01e-115 358
MsG0780035992.01.T01 MTR_7g098200 35.678 597 359 10 42 637 10 582 1.81e-115 357
MsG0780035992.01.T01 MTR_3g072300 36.254 582 347 12 38 614 1 563 8.73e-115 355
MsG0780035992.01.T01 MTR_7g088825 35.185 594 363 10 54 638 10 590 9.82e-114 353
MsG0780035992.01.T01 MTR_7g098090 35.225 599 367 12 34 625 5 589 2.55e-113 352
MsG0780035992.01.T01 MTR_5g055000 35.406 579 354 10 63 634 18 583 3.79e-113 351
MsG0780035992.01.T01 MTR_5g012270 34.859 568 342 9 62 618 28 578 4.10e-113 351
MsG0780035992.01.T01 MTR_3g462710 40.598 468 260 7 149 612 1 454 9.76e-113 346
MsG0780035992.01.T01 MTR_3g100980 37.004 554 328 10 63 613 16 551 1.63e-111 347
MsG0780035992.01.T01 MTR_5g085850 36.285 576 333 7 45 615 13 559 6.64e-111 345
MsG0780035992.01.T01 MTR_5g012290 36.222 577 343 7 60 627 24 584 5.86e-110 343
MsG0780035992.01.T01 MTR_7g098220 37.696 573 334 11 44 611 13 567 1.80e-109 342
MsG0780035992.01.T01 MTR_4g101380 36.500 600 345 12 48 626 2 586 2.43e-109 342
MsG0780035992.01.T01 MTR_1g041815 35.752 565 348 8 51 614 16 566 4.05e-109 341
MsG0780035992.01.T01 MTR_7g005930 35.221 565 338 9 52 610 25 567 5.07e-109 340
MsG0780035992.01.T01 MTR_3g069420 35.009 557 338 11 62 613 33 570 8.78e-109 340
MsG0780035992.01.T01 MTR_2g017750 34.397 564 351 9 63 614 34 590 1.48e-108 340
MsG0780035992.01.T01 MTR_7g065080 34.336 565 337 11 54 612 22 558 9.29e-108 337
MsG0780035992.01.T01 MTR_1g116930 35.791 556 328 9 62 610 22 555 1.12e-107 337
MsG0780035992.01.T01 MTR_3g069500 33.394 554 341 10 62 613 34 561 2.39e-107 336
MsG0780035992.01.T01 MTR_5g038060 36.572 566 337 9 54 612 27 577 5.62e-107 336
MsG0780035992.01.T01 MTR_1g041875 34.791 549 338 9 40 588 8 536 9.91e-107 335
MsG0780035992.01.T01 MTR_1g041835 35.044 565 352 8 51 614 16 566 3.02e-106 333
MsG0780035992.01.T01 MTR_4g114340 36.767 563 322 10 60 612 21 559 1.73e-105 331
MsG0780035992.01.T01 MTR_3g100980 35.223 582 328 11 63 613 16 579 2.04e-105 332
MsG0780035992.01.T01 MTR_3g069440 33.813 556 346 12 62 613 32 569 2.91e-105 331
MsG0780035992.01.T01 MTR_7g013270 36.445 557 323 11 63 610 90 624 3.75e-105 332
MsG0780035992.01.T01 MTR_7g010820 36.106 565 347 6 62 621 25 580 8.75e-105 330
MsG0780035992.01.T01 MTR_7g088790 34.353 556 347 8 63 612 29 572 9.98e-105 330
MsG0780035992.01.T01 MTR_1g042310 33.392 572 366 9 44 614 9 566 2.92e-104 328
MsG0780035992.01.T01 MTR_4g019580 32.979 564 354 9 54 613 27 570 9.47e-103 325
MsG0780035992.01.T01 MTR_8g038880 35.428 573 325 9 62 621 19 559 9.66e-103 324
MsG0780035992.01.T01 MTR_7g098220 37.106 539 318 9 78 611 1 523 4.20e-102 322
MsG0780035992.01.T01 MTR_4g123537 33.831 603 369 14 42 637 18 597 2.38e-101 322
MsG0780035992.01.T01 MTR_4g107530 34.722 576 344 11 66 627 36 593 8.68e-101 320
MsG0780035992.01.T01 MTR_5g014150 33.813 556 349 8 62 610 43 586 8.96e-100 317
MsG0780035992.01.T01 MTR_8g087780 35.943 562 344 9 63 614 21 576 2.34e-99 315
MsG0780035992.01.T01 MTR_8g469480 34.477 554 346 8 66 612 41 584 4.33e-99 315
MsG0780035992.01.T01 MTR_1g042310 33.022 536 346 7 80 614 6 529 4.38e-99 314
MsG0780035992.01.T01 MTR_7g088820 31.325 581 374 9 63 630 25 593 8.86e-99 314
MsG0780035992.01.T01 MTR_1g041885 34.436 514 319 6 82 595 1 496 2.28e-98 311
MsG0780035992.01.T01 MTR_3g014790 33.979 568 328 11 62 615 16 550 3.22e-98 311
MsG0780035992.01.T01 MTR_4g098800 33.333 567 353 9 51 610 25 573 5.94e-98 312
MsG0780035992.01.T01 MTR_8g087810 36.796 568 332 12 63 614 21 577 6.71e-98 311
MsG0780035992.01.T01 MTR_4g107510 34.039 567 333 13 66 612 39 584 1.35e-97 311
MsG0780035992.01.T01 MTR_1g042310 32.772 534 346 7 82 614 1 522 3.00e-97 309
MsG0780035992.01.T01 MTR_4g098800 33.333 570 349 10 51 610 90 638 4.28e-97 311
MsG0780035992.01.T01 MTR_8g469310 34.752 564 336 9 63 612 26 571 1.67e-96 308
MsG0780035992.01.T01 MTR_8g469470 31.317 562 364 8 63 613 32 582 2.69e-96 307
MsG0780035992.01.T01 MTR_2g005130 33.217 572 341 12 48 612 26 563 9.26e-95 303
MsG0780035992.01.T01 MTR_4g033315 33.034 557 330 11 62 611 30 550 8.99e-94 300
MsG0780035992.01.T01 MTR_4g033310 33.034 557 330 11 62 611 30 550 8.99e-94 300
MsG0780035992.01.T01 MTR_7g098150 37.143 455 274 8 34 486 5 449 1.01e-93 298
MsG0780035992.01.T01 MTR_5g038380 34.003 597 354 12 31 612 3 574 6.13e-93 298
MsG0780035992.01.T01 MTR_7g098200 36.364 462 284 5 177 637 26 478 7.93e-93 295
MsG0780035992.01.T01 MTR_7g088820 31.919 542 344 10 102 630 2 531 2.50e-92 295
MsG0780035992.01.T01 MTR_7g065080 34.809 497 290 11 122 612 3 471 8.87e-92 293
MsG0780035992.01.T01 MTR_5g038190 31.065 573 372 9 59 623 20 577 7.81e-91 293
MsG0780035992.01.T01 MTR_4g107670 31.675 603 359 14 34 614 2 573 1.20e-90 292
MsG0780035992.01.T01 MTR_4g107580 31.703 593 364 12 66 637 27 599 1.38e-90 293
MsG0780035992.01.T01 MTR_4g033325 32.562 562 334 10 62 616 30 553 6.37e-90 290
MsG0780035992.01.T01 MTR_2g101590 33.163 588 351 14 63 634 26 587 2.93e-89 290
MsG0780035992.01.T01 MTR_8g103233 35.626 567 315 12 63 609 17 553 2.96e-89 289
MsG0780035992.01.T01 MTR_2g101610 33.390 587 347 15 65 634 29 588 6.68e-89 290
MsG0780035992.01.T01 MTR_0294s0020 31.362 558 346 9 62 616 30 553 1.00e-88 287
MsG0780035992.01.T01 MTR_1g026740 33.095 559 350 9 58 609 12 553 1.03e-85 279
MsG0780035992.01.T01 MTR_3g005010 31.404 570 338 11 51 612 19 543 2.72e-85 277
MsG0780035992.01.T01 MTR_4g033330 31.725 539 325 11 63 594 31 533 4.46e-84 274
MsG0780035992.01.T01 MTR_7g088820 33.191 467 293 8 177 630 23 483 8.18e-83 269
MsG0780035992.01.T01 MTR_2g101650 31.478 575 365 13 46 609 7 563 8.53e-82 270
MsG0780035992.01.T01 MTR_4g011280 31.765 595 355 14 61 632 30 596 1.64e-80 266
MsG0780035992.01.T01 MTR_1g009200 33.507 576 350 11 63 626 27 581 1.64e-79 263
MsG0780035992.01.T01 MTR_4g107610 31.228 570 360 14 63 620 31 580 2.12e-79 263
MsG0780035992.01.T01 MTR_4g033375 31.548 504 299 9 62 555 31 498 5.57e-78 257
MsG0780035992.01.T01 MTR_1g026750 32.310 554 347 10 65 609 20 554 8.26e-78 258
MsG0780035992.01.T01 MTR_1g026770 32.550 553 346 12 65 609 17 550 1.03e-76 255
MsG0780035992.01.T01 MTR_2g101560 32.297 579 344 15 65 621 29 581 4.36e-76 255
MsG0780035992.01.T01 MTR_2g101640 31.369 577 353 15 63 621 23 574 7.29e-76 255
MsG0780035992.01.T01 MTR_4g033395 31.463 499 306 8 62 555 31 498 4.64e-74 246
MsG0780035992.01.T01 MTR_4g033325 31.692 467 278 9 157 616 23 455 1.13e-71 239
MsG0780035992.01.T01 MTR_4g033325 32.574 439 267 8 185 616 13 429 1.48e-71 238
MsG0780035992.01.T01 MTR_1g057460 29.982 557 340 14 65 609 46 564 1.37e-70 239
MsG0780035992.01.T01 MTR_4g033385 32.658 444 275 9 178 616 32 456 4.43e-70 234
MsG0780035992.01.T01 MTR_1g057460 29.222 527 327 11 95 609 1 493 6.32e-67 228
MsG0780035992.01.T01 MTR_7g051880 30.991 555 327 12 60 609 22 525 4.48e-66 226
MsG0780035992.01.T01 MTR_7g064780 27.719 570 387 10 50 609 13 567 4.52e-66 228
MsG0780035992.01.T01 MTR_7g052600 31.749 526 303 12 89 609 51 525 1.38e-65 224
MsG0780035992.01.T01 MTR_7g051830 30.989 526 307 12 89 609 51 525 4.72e-65 223
MsG0780035992.01.T01 MTR_0236s0050 29.703 505 313 10 113 609 23 493 1.44e-64 221
MsG0780035992.01.T01 MTR_7g064800 28.647 569 379 10 51 607 14 567 1.09e-63 221
MsG0780035992.01.T01 MTR_4g024930 29.009 555 352 14 62 610 35 553 5.28e-63 219
MsG0780035992.01.T01 MTR_7g098210 28.008 532 290 13 82 611 1 441 6.76e-54 191
MsG0780035992.01.T01 MTR_2g093160 27.061 558 370 11 62 612 20 547 7.02e-51 185
MsG0780035992.01.T01 MTR_2g093180 28.447 573 344 17 62 612 20 548 6.74e-50 182
MsG0780035992.01.T01 MTR_2g093640 24.783 577 371 13 56 612 14 547 3.04e-49 181
MsG0780035992.01.T01 MTR_4g033310 36.429 280 162 6 337 611 218 486 3.48e-49 179
MsG0780035992.01.T01 MTR_4g033310 35.359 181 100 4 62 242 30 193 3.78e-23 103
MsG0780035992.01.T01 MTR_1g009170 31.630 411 213 9 191 591 5 357 2.96e-47 171
MsG0780035992.01.T01 MTR_6g008690 25.594 547 363 10 80 614 24 538 9.59e-45 167
MsG0780035992.01.T01 MTR_3g065350 39.264 163 91 1 377 539 1 155 7.36e-34 127
MsG0780035992.01.T01 MTR_4g033390 34.783 92 58 1 525 616 30 119 8.52e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780035992.01.T01 AT5G13400 77.977 613 132 2 1 612 1 611 0.0 1007
MsG0780035992.01.T01 AT3G54140 40.244 574 321 10 44 612 7 563 1.19e-144 432
MsG0780035992.01.T01 AT3G54140 40.244 574 321 10 44 612 7 563 1.19e-144 432
MsG0780035992.01.T01 AT5G01180 40.838 573 318 9 44 612 8 563 3.66e-143 428
MsG0780035992.01.T01 AT5G01180 40.838 573 318 9 44 612 8 563 3.66e-143 428
MsG0780035992.01.T01 AT5G01180 40.838 573 318 9 44 612 8 563 3.66e-143 428
MsG0780035992.01.T01 AT2G02040 41.336 554 308 7 63 612 41 581 1.82e-142 427
MsG0780035992.01.T01 AT1G62200 40.278 576 319 8 32 602 22 577 7.80e-137 412
MsG0780035992.01.T01 AT1G62200 38.512 605 318 9 32 602 22 606 9.05e-131 398
MsG0780035992.01.T01 AT1G62200 38.512 605 318 9 32 602 36 620 1.27e-130 398
MsG0780035992.01.T01 AT2G02020 38.011 563 296 9 51 611 31 542 3.27e-120 368
MsG0780035992.01.T01 AT2G37900 34.729 573 336 11 45 613 29 567 9.32e-113 350
MsG0780035992.01.T01 AT2G26690 37.282 574 326 13 60 623 21 570 1.03e-111 347
MsG0780035992.01.T01 AT3G53960 35.233 579 333 14 45 613 28 574 2.69e-111 347
MsG0780035992.01.T01 AT5G46040 34.848 594 368 11 40 630 6 583 1.18e-110 345
MsG0780035992.01.T01 AT2G40460 34.888 579 353 10 38 614 1 557 4.59e-110 343
MsG0780035992.01.T01 AT1G68570 36.250 560 341 7 65 618 25 574 1.71e-109 342
MsG0780035992.01.T01 AT3G21670 36.234 563 323 6 60 614 26 560 2.19e-109 342
MsG0780035992.01.T01 AT5G46050 35.091 550 341 9 40 588 6 540 1.48e-108 339
MsG0780035992.01.T01 AT3G54450 33.394 554 338 6 65 612 14 542 1.81e-106 333
MsG0780035992.01.T01 AT1G68570 35.818 550 337 7 75 618 5 544 6.59e-106 332
MsG0780035992.01.T01 AT1G12110 35.540 574 348 9 60 626 24 582 1.29e-105 332
MsG0780035992.01.T01 AT1G69870 34.000 600 371 12 44 635 33 615 6.74e-105 331
MsG0780035992.01.T01 AT2G26690 36.315 559 322 12 75 623 3 537 1.43e-104 328
MsG0780035992.01.T01 AT1G32450 34.102 607 355 15 41 626 17 599 1.32e-102 325
MsG0780035992.01.T01 AT2G02020 35.346 563 290 10 51 611 31 521 1.03e-101 320
MsG0780035992.01.T01 AT2G26690 36.496 548 314 13 86 623 2 525 3.58e-101 318
MsG0780035992.01.T01 AT1G59740 34.128 545 342 6 62 604 40 569 2.44e-99 315
MsG0780035992.01.T01 AT2G37900 35.433 508 299 10 110 613 6 488 3.42e-99 312
MsG0780035992.01.T01 AT1G69850 34.790 572 336 9 63 613 25 580 7.49e-99 314
MsG0780035992.01.T01 AT4G21680 35.000 560 340 8 62 611 27 572 7.91e-99 314
MsG0780035992.01.T01 AT1G33440 34.138 580 355 11 62 634 37 596 9.97e-98 311
MsG0780035992.01.T01 AT5G19640 34.532 556 322 12 64 610 60 582 5.86e-96 307
MsG0780035992.01.T01 AT1G27040 34.234 555 338 9 63 611 23 556 3.24e-91 293
MsG0780035992.01.T01 AT1G27040 34.234 555 338 9 63 611 27 560 3.45e-91 293
MsG0780035992.01.T01 AT1G27080 31.570 567 359 9 53 612 4 548 1.03e-90 293
MsG0780035992.01.T01 AT1G52190 34.159 565 343 11 59 609 17 566 5.11e-89 289
MsG0780035992.01.T01 AT1G27040 34.196 541 329 9 77 611 9 528 9.68e-88 283
MsG0780035992.01.T01 AT1G18880 30.645 558 363 7 66 612 22 566 1.71e-87 285
MsG0780035992.01.T01 AT3G47960 32.740 562 346 10 66 612 64 608 9.17e-87 284
MsG0780035992.01.T01 AT5G62680 31.188 606 389 11 21 612 1 592 1.84e-86 283
MsG0780035992.01.T01 AT3G16180 33.276 583 351 12 65 625 25 591 5.91e-86 280
MsG0780035992.01.T01 AT5G62730 30.808 594 362 11 33 615 33 588 6.12e-86 280
MsG0780035992.01.T01 AT5G46050 34.633 436 275 6 154 588 2 428 5.20e-85 274
MsG0780035992.01.T01 AT5G62730 31.485 559 341 10 68 615 2 529 2.02e-84 275
MsG0780035992.01.T01 AT1G72120 33.630 562 325 13 62 612 28 552 1.77e-83 273
MsG0780035992.01.T01 AT1G22570 31.028 564 344 12 62 612 29 560 5.71e-82 269
MsG0780035992.01.T01 AT1G72140 30.265 565 337 11 62 613 33 553 1.55e-80 265
MsG0780035992.01.T01 AT1G22550 32.389 565 334 14 62 612 29 559 1.85e-80 265
MsG0780035992.01.T01 AT1G27080 31.418 522 329 9 98 612 7 506 2.93e-80 264
MsG0780035992.01.T01 AT1G72125 31.495 562 349 11 62 616 28 560 3.43e-80 265
MsG0780035992.01.T01 AT3G25260 30.309 551 324 11 63 609 21 515 2.36e-77 256
MsG0780035992.01.T01 AT1G22540 31.712 555 338 15 62 609 29 549 5.30e-77 256
MsG0780035992.01.T01 AT1G69860 31.185 574 355 10 52 612 3 549 1.70e-76 254
MsG0780035992.01.T01 AT1G22570 30.254 552 340 12 74 612 4 523 7.02e-76 252
MsG0780035992.01.T01 AT1G72130 29.965 564 334 13 64 617 26 538 6.41e-74 247
MsG0780035992.01.T01 AT5G28470 28.905 557 366 12 63 609 17 553 2.45e-71 241
MsG0780035992.01.T01 AT5G28470 28.905 557 364 13 63 609 17 551 7.87e-70 237
MsG0780035992.01.T01 AT3G25280 28.727 550 340 12 63 609 21 521 2.71e-67 229
MsG0780035992.01.T01 AT3G45710 28.571 588 358 17 56 623 14 559 1.59e-65 225
MsG0780035992.01.T01 AT3G45650 28.108 555 361 12 63 612 22 543 6.89e-65 223
MsG0780035992.01.T01 AT3G45700 28.371 571 360 14 62 622 15 546 7.86e-63 218
MsG0780035992.01.T01 AT3G45680 28.970 573 362 15 62 625 19 555 4.55e-62 216
MsG0780035992.01.T01 AT3G45660 27.875 574 367 15 63 629 21 554 5.47e-62 216
MsG0780035992.01.T01 AT3G45660 27.875 574 367 15 63 629 21 554 5.47e-62 216
MsG0780035992.01.T01 AT3G45660 27.875 574 367 15 63 629 42 575 7.32e-62 216
MsG0780035992.01.T01 AT3G45650 26.850 581 361 13 63 612 22 569 1.83e-59 209
MsG0780035992.01.T01 AT3G45720 28.393 560 353 15 63 612 19 540 1.32e-56 201
MsG0780035992.01.T01 AT1G72130 28.894 443 269 10 185 617 14 420 1.66e-56 197
MsG0780035992.01.T01 AT1G72130 28.894 443 269 10 185 617 14 420 1.66e-56 197
MsG0780035992.01.T01 AT5G14940 24.825 572 343 12 80 615 24 544 1.31e-54 195
MsG0780035992.01.T01 AT3G01350 26.003 573 357 11 80 621 24 560 3.07e-54 194
MsG0780035992.01.T01 AT3G45690 27.207 555 328 16 62 612 17 499 6.67e-51 184
MsG0780035992.01.T01 AT5G11570 25.830 542 311 13 72 609 22 476 1.30e-43 163
MsG0780035992.01.T01 AT2G38100 25.849 530 319 17 99 609 10 484 2.66e-29 122
MsG0780035992.01.T01 AT2G38100 25.777 547 331 18 82 609 10 500 4.35e-29 122
MsG0780035992.01.T01 AT2G38100 25.777 547 331 18 82 609 16 506 6.03e-29 121

Find 115 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTACCCAAGTGAGTGTTTA+AGG 0.127947 7:+1042521 None:intergenic
GAACATTAAACTTGATAATT+TGG 0.135880 7:-1041872 MsG0780035992.01.T01:CDS
TGCCAAATTTAAGTGCTTAT+TGG 0.163181 7:-1042245 MsG0780035992.01.T01:CDS
GGTCTATGTTCAAATGAAAT+TGG 0.164056 7:-1043347 MsG0780035992.01.T01:CDS
AATGATCTCATAGTTTATTT+TGG 0.164742 7:-1041698 None:intergenic
ATTGCTGCCTTCTTTATATT+TGG 0.176863 7:-1045177 MsG0780035992.01.T01:intron
GCAGAAAGAATGGCTTATTT+TGG 0.182047 7:-1044857 MsG0780035992.01.T01:CDS
TTGATTCAATATTGCTTAAT+TGG 0.195137 7:-1042219 MsG0780035992.01.T01:CDS
TTGGGTTGGGGTTCTGCTTT+TGG 0.200637 7:-1043328 MsG0780035992.01.T01:CDS
AACCAATAAGCACTTAAATT+TGG 0.204333 7:+1042243 None:intergenic
TTCTAGCTAGTTTAAATATA+TGG 0.208193 7:-1041820 MsG0780035992.01.T01:exon
TTGCTCATACTGATGATTTC+AGG 0.218331 7:-1043090 MsG0780035992.01.T01:intron
AGACCATGTGTATCTTCTTT+TGG 0.243431 7:-1043481 MsG0780035992.01.T01:CDS
GTCCCTTGTTGAGGTGCTTC+TGG 0.246454 7:+1045354 None:intergenic
TCACAAGCTTCTTCTGTTCT+TGG 0.246695 7:-1044743 MsG0780035992.01.T01:CDS
CAAAGAATTGGAATTGGTTT+AGG 0.253602 7:-1042366 MsG0780035992.01.T01:CDS
AAATATACCCCTCACTTTAG+AGG 0.270126 7:+1041775 None:intergenic
AATGCAGTCAATAACTTCTT+AGG 0.277380 7:-1044770 MsG0780035992.01.T01:CDS
GCTGCTTTAGCTGGTGGATT+AGG 0.281571 7:-1042108 MsG0780035992.01.T01:CDS
AGGTTCCATTGACTTGGATT+AGG 0.295324 7:+1042669 None:intergenic
ATGCATACCTTGGACGTTAC+TGG 0.310134 7:-1044706 MsG0780035992.01.T01:CDS
ATTGAGGATCTTTCTAAAAC+TGG 0.317548 7:-1045207 MsG0780035992.01.T01:CDS
TCTACACCTGTTAATATTCA+TGG 0.321471 7:-1045237 MsG0780035992.01.T01:CDS
TGGTAGAAGATCTGCTATAA+AGG 0.325332 7:-1043125 MsG0780035992.01.T01:CDS
GAGGATAGAAGGATGGCTTT+AGG 0.330296 7:-1045279 MsG0780035992.01.T01:CDS
GACCAATTATCACTTCTATT+AGG 0.331157 7:-1043897 MsG0780035992.01.T01:CDS
TTCTATCTTTCTGTGACAAT+TGG 0.332881 7:-1043394 MsG0780035992.01.T01:CDS
TTCCTAATAGAAGTGATAAT+TGG 0.337644 7:+1043895 None:intergenic
AAAGTGAGGGGTATATTTAA+AGG 0.343643 7:-1041770 MsG0780035992.01.T01:three_prime_UTR
GCATCTCAGCTTCAAAGAAT+TGG 0.351587 7:-1042378 MsG0780035992.01.T01:CDS
TGAAAAGCGGTACAAAAGTT+TGG 0.355525 7:+1042427 None:intergenic
TGTTCAAATGAAATTGGGTT+GGG 0.357013 7:-1043341 MsG0780035992.01.T01:CDS
GGTTCCATTGACTTGGATTA+GGG 0.361442 7:+1042670 None:intergenic
CAGCTTCAAAGAATTGGAAT+TGG 0.361704 7:-1042372 MsG0780035992.01.T01:CDS
GTGTGTTAGAGTTAGTAAAA+TGG 0.369659 7:-1045397 MsG0780035992.01.T01:exon
CAAGCTTCTTCTGTTCTTGG+TGG 0.377343 7:-1044740 MsG0780035992.01.T01:CDS
AGGATAGAAGGATGGCTTTA+GGG 0.379409 7:-1045278 MsG0780035992.01.T01:CDS
CAGATAAAAGACAAGAATCT+TGG 0.379936 7:-1042032 MsG0780035992.01.T01:CDS
TCTGCTTATGCTGCTTTAGC+TGG 0.393452 7:-1042117 MsG0780035992.01.T01:CDS
TCATTGAGTCTGAGGATAGA+AGG 0.397462 7:-1045290 MsG0780035992.01.T01:CDS
GTTCTATACATAACAGCATT+TGG 0.401544 7:-1043828 MsG0780035992.01.T01:CDS
CGAAAGAGAAAAGAATCATT+TGG 0.406039 7:-1043181 MsG0780035992.01.T01:CDS
GAGATCATTAAAATCTTAAT+CGG 0.412263 7:+1041712 None:intergenic
AAAACCGGCATGCATGTTAC+TGG 0.416063 7:+1042489 None:intergenic
ATGATTGTGCAAGCTGGAAT+TGG 0.416463 7:+1042597 None:intergenic
GTTGGGTTGTATGAGGTTCC+TGG 0.417358 7:-1043145 MsG0780035992.01.T01:CDS
TAAGAAGTTATTGACTGCAT+TGG 0.421169 7:+1044772 None:intergenic
TGTTTAAGGTATATGCTTGT+TGG 0.437145 7:+1042535 None:intergenic
TTGATAATTTGGCAAACAAT+GGG 0.441596 7:-1041861 MsG0780035992.01.T01:CDS
ACTTGAGCGACTCGTGTAAG+AGG 0.451347 7:+1043220 None:intergenic
TACACGAGTCGCTCAAGTAT+TGG 0.457764 7:-1043215 MsG0780035992.01.T01:CDS
ATCTTTCTAAAACTGGTGGT+TGG 0.458191 7:-1045200 MsG0780035992.01.T01:CDS
ATGCATCACATAAAACATAA+AGG 0.459047 7:+1044814 None:intergenic
TTTGGTAATAGTGAAGTTGT+TGG 0.461645 7:-1043163 MsG0780035992.01.T01:CDS
GTCTATGTTCAAATGAAATT+GGG 0.468317 7:-1043346 MsG0780035992.01.T01:CDS
AAATGAAATGGCAGAAAGAA+TGG 0.471770 7:-1044867 MsG0780035992.01.T01:CDS
TAAGCACTTAAATTTGGCAT+TGG 0.472247 7:+1042249 None:intergenic
CCTGATGCTATGAAAAGTAT+TGG 0.473797 7:-1042141 MsG0780035992.01.T01:CDS
CTTGATAATTTGGCAAACAA+TGG 0.474016 7:-1041862 MsG0780035992.01.T01:CDS
GGTAGAAGATCTGCTATAAA+GGG 0.480231 7:-1043124 MsG0780035992.01.T01:CDS
GTACAAAGGTTCCATTGACT+TGG 0.480579 7:+1042663 None:intergenic
GGTTCATTGGCAATAGCAAT+GGG 0.486016 7:-1043307 MsG0780035992.01.T01:CDS
TTTCTTGCTGATGCATACCT+TGG 0.487967 7:-1044716 MsG0780035992.01.T01:CDS
TGAAGTTGTTGGGTTGTATG+AGG 0.491613 7:-1043152 MsG0780035992.01.T01:CDS
TGGTTCATTGGCAATAGCAA+TGG 0.496742 7:-1043308 MsG0780035992.01.T01:CDS
TTGTATAGACATAGGTTGCC+AGG 0.499116 7:-1043250 MsG0780035992.01.T01:CDS
GCTTATGCTGCTTTAGCTGG+TGG 0.504449 7:-1042114 MsG0780035992.01.T01:CDS
GTACACCTTTGTATAGACAT+AGG 0.505286 7:-1043258 MsG0780035992.01.T01:CDS
TTGGTAATAGTGAAGTTGTT+GGG 0.508569 7:-1043162 MsG0780035992.01.T01:CDS
AGAAGGATGGCTTTAGGGCG+TGG 0.510086 7:-1045273 MsG0780035992.01.T01:CDS
AGTGTTGTTAAATCAGCCTC+TGG 0.514150 7:-1042060 MsG0780035992.01.T01:CDS
TTTCTGCTCATTGAAGTGCA+TGG 0.520712 7:+1045330 None:intergenic
TAGAGGTATGTCATTTGCCA+TGG 0.522678 7:+1043855 None:intergenic
GCATTGGATGAACTTGCAAA+AGG 0.523734 7:+1044788 None:intergenic
GTTCAAATGAAATTGGGTTG+GGG 0.526250 7:-1043340 MsG0780035992.01.T01:CDS
TTAAGCATGATTGTGCAAGC+TGG 0.527229 7:+1042591 None:intergenic
ATGTTCAAATGAAATTGGGT+TGG 0.527545 7:-1043342 MsG0780035992.01.T01:CDS
ATAACAGCATTTGGAGCTGC+AGG 0.530231 7:-1043819 MsG0780035992.01.T01:intron
ATATACCTTAAACACTCACT+TGG 0.530483 7:-1042526 MsG0780035992.01.T01:CDS
ATGGCCCTAATCCAAGTCAA+TGG 0.532912 7:-1042674 MsG0780035992.01.T01:CDS
CTACTTGTGTTACTGTACAA+AGG 0.543543 7:+1042649 None:intergenic
ATACATACCAAATATAAAGA+AGG 0.545633 7:+1045170 None:intergenic
CAGCACATAGATACAAATAC+AGG 0.546985 7:-1041918 MsG0780035992.01.T01:CDS
GACACAACATGTTTATGAGA+TGG 0.562119 7:-1041896 MsG0780035992.01.T01:CDS
GCTCTACAATTGAAACAAGA+TGG 0.565645 7:-1042693 MsG0780035992.01.T01:CDS
GGTTACTGCAGGAAATGAAA+TGG 0.566480 7:-1044879 MsG0780035992.01.T01:intron
GTATTAGTCCTCTAAAGTGA+GGG 0.567731 7:-1041783 MsG0780035992.01.T01:three_prime_UTR
GGTAATAGAGAGCTAATATG+AGG 0.570895 7:+1042448 None:intergenic
TCAATGAGCAGAAAGAAACT+TGG 0.574485 7:-1045321 MsG0780035992.01.T01:CDS
TTTATAGCAGATCTTCTACC+AGG 0.580725 7:+1043127 None:intergenic
TTAGGGCGTGGTTATACAAG+AGG 0.582655 7:-1045261 MsG0780035992.01.T01:CDS
GAGGATCTTTCTAAAACTGG+TGG 0.590113 7:-1045204 MsG0780035992.01.T01:CDS
TATTCATGGAAAATCCATTG+AGG 0.592324 7:-1045223 MsG0780035992.01.T01:CDS
GTGCATGGTGTCCCTTGTTG+AGG 0.594959 7:+1045345 None:intergenic
CGCATCACTGGTCATCCGCA+TGG 0.596174 7:-1042402 MsG0780035992.01.T01:CDS
TGTATTAGTCCTCTAAAGTG+AGG 0.600612 7:-1041784 MsG0780035992.01.T01:three_prime_UTR
CCAGTGATGCGTTTGAAAAG+CGG 0.602166 7:+1042414 None:intergenic
ACTTCCAGTAACATGCATGC+CGG 0.608981 7:-1042493 MsG0780035992.01.T01:CDS
CGTGTAAGAGGACTTCCACC+TGG 0.612686 7:+1043232 None:intergenic
CTATTGTCCAGTAACGTCCA+AGG 0.628088 7:+1044699 None:intergenic
TCACCAGAAGCACCTCAACA+AGG 0.630442 7:-1045357 MsG0780035992.01.T01:CDS
TATACCTTAAACACTCACTT+GGG 0.633268 7:-1042525 MsG0780035992.01.T01:CDS
ATGAGGAATACACTTAGACC+TGG 0.633942 7:+1042465 None:intergenic
CTTTACTACGATTTATCTCG+CGG 0.635603 7:-1044672 MsG0780035992.01.T01:intron
TGAGTCTGAGGATAGAAGGA+TGG 0.636242 7:-1045286 MsG0780035992.01.T01:CDS
CACCAGAAGCACCTCAACAA+GGG 0.650042 7:-1045356 MsG0780035992.01.T01:CDS
ACTGTGAGCCTGCAAAACCA+TGG 0.656363 7:-1043872 MsG0780035992.01.T01:CDS
TTGTCTCAAAACATCAACAC+TGG 0.656717 7:-1042009 MsG0780035992.01.T01:CDS
AATTGTAGCATTCACAGCAG+TGG 0.669454 7:-1043368 MsG0780035992.01.T01:CDS
TATTAGTCCTCTAAAGTGAG+GGG 0.677539 7:-1041782 MsG0780035992.01.T01:three_prime_UTR
GGCAACCTATGTCTATACAA+AGG 0.679165 7:+1043253 None:intergenic
TTATGTATAGAACAGTGTAG+AGG 0.694790 7:+1043838 None:intergenic
TATAGACATAGGTTGCCAGG+TGG 0.698387 7:-1043247 MsG0780035992.01.T01:CDS
GCTCCAAAAGAAGATACACA+TGG 0.731891 7:+1043478 None:intergenic
TGAAGCTGAGATGCACCATG+CGG 0.749014 7:+1042387 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGATGAAAAAAAAAAAA+AGG + Chr7:1044414-1044433 None:intergenic 10.0%
!!! TTTTAATTCTATATATGTTT+AGG - Chr7:1044430-1044449 MsG0780035992.01.T01:intron 10.0%
!! ACTTATTATGATTATGAAAA+TGG - Chr7:1042209-1042228 MsG0780035992.01.T01:CDS 15.0%
!! AGAATGCATTAAAATATATT+AGG - Chr7:1042157-1042176 MsG0780035992.01.T01:CDS 15.0%
!!! AATGATATTTTACAATTTTG+TGG + Chr7:1042658-1042677 None:intergenic 15.0%
!!! CAATTTATTTTAATCTTTGT+TGG - Chr7:1043630-1043649 MsG0780035992.01.T01:intron 15.0%
!! AAGAATAATATCTCTTACAA+TGG + Chr7:1044386-1044405 None:intergenic 20.0%
!! ATACATACCAAATATAAAGA+AGG + Chr7:1041994-1042013 None:intergenic 20.0%
!! CAAAGTTATTATGATATATC+TGG + Chr7:1043152-1043171 None:intergenic 20.0%
!! GAGATCATTAAAATCTTAAT+CGG + Chr7:1045452-1045471 None:intergenic 20.0%
!! GTGTAAATAAATCATGTTTA+TGG + Chr7:1044344-1044363 None:intergenic 20.0%
!! TATAACTAGAAATGTTACAT+TGG - Chr7:1042719-1042738 MsG0780035992.01.T01:intron 20.0%
!! TTAAGAGTGAATAAATAGAT+TGG - Chr7:1042573-1042592 MsG0780035992.01.T01:CDS 20.0%
!! TTGATTCAATATTGCTTAAT+TGG - Chr7:1044942-1044961 MsG0780035992.01.T01:intron 20.0%
!!! AAAACTCACTTTTACATATA+AGG + Chr7:1041724-1041743 None:intergenic 20.0%
!!! AAACTCACTTTTACATATAA+GGG + Chr7:1041723-1041742 None:intergenic 20.0%
!!! CTAATTTTCCTATGAAATTT+AGG + Chr7:1042877-1042896 None:intergenic 20.0%
!!! GAACATTAAACTTGATAATT+TGG - Chr7:1045289-1045308 MsG0780035992.01.T01:CDS 20.0%
!!! GAATTGGAATTAGTTTTATA+AGG + Chr7:1044551-1044570 None:intergenic 20.0%
!!! TTATTTTCTTAAGTTGCTAA+TGG - Chr7:1043503-1043522 MsG0780035992.01.T01:intron 20.0%
!!! TTCTAGCTAGTTTAAATATA+TGG - Chr7:1045341-1045360 MsG0780035992.01.T01:CDS 20.0%
!!! TTTCATAGGAAAATTAGTTT+AGG - Chr7:1042880-1042899 MsG0780035992.01.T01:intron 20.0%
! AACCAATAAGCACTTAAATT+TGG + Chr7:1044921-1044940 None:intergenic 25.0%
! ATGCATCACATAAAACATAA+AGG + Chr7:1042350-1042369 None:intergenic 25.0%
! ATTCTATCATATTTCTCAAC+AGG - Chr7:1043653-1043672 MsG0780035992.01.T01:intron 25.0%
! GTCTATGTTCAAATGAAATT+GGG - Chr7:1043815-1043834 MsG0780035992.01.T01:intron 25.0%
! TTCCTAATAGAAGTGATAAT+TGG + Chr7:1043269-1043288 None:intergenic 25.0%
! TTGCTAATTCACAAAAATGA+GGG + Chr7:1042629-1042648 None:intergenic 25.0%
! TTTGCTAATTCACAAAAATG+AGG + Chr7:1042630-1042649 None:intergenic 25.0%
!! ATTCCAAACTTTTATGAACA+GGG - Chr7:1043180-1043199 MsG0780035992.01.T01:CDS 25.0%
!! GATTTTCCATGAATATTAAC+AGG + Chr7:1041933-1041952 None:intergenic 25.0%
!! TCTAACATGCTTTTCTTTAT+TGG - Chr7:1043881-1043900 MsG0780035992.01.T01:CDS 25.0%
!! TTGATAATTTGGCAAACAAT+GGG - Chr7:1045300-1045319 MsG0780035992.01.T01:CDS 25.0%
!! TTTAGGAGTTTCGATTTTAT+CGG - Chr7:1044812-1044831 MsG0780035992.01.T01:CDS 25.0%
!!! ATAGAAAGCATCAAAACTTT+TGG + Chr7:1044129-1044148 None:intergenic 25.0%
!!! ATGTTTTTGAGGTAAAAGAT+AGG - Chr7:1042091-1042110 MsG0780035992.01.T01:CDS 25.0%
!!! CAAGTTTGATTACTTTTACT+GGG - Chr7:1045175-1045194 MsG0780035992.01.T01:intron 25.0%
!!! GATTTTTTTTGTTGCTTCTA+TGG - Chr7:1042255-1042274 MsG0780035992.01.T01:CDS 25.0%
!!! TAGTATATGTCATGTTTTTG+AGG - Chr7:1042080-1042099 MsG0780035992.01.T01:CDS 25.0%
AAATGAAATGGCAGAAAGAA+TGG - Chr7:1042294-1042313 MsG0780035992.01.T01:CDS 30.0%
AATGCAGTCAATAACTTCTT+AGG - Chr7:1042391-1042410 MsG0780035992.01.T01:CDS 30.0%
ATATACCTTAAACACTCACT+TGG - Chr7:1044635-1044654 MsG0780035992.01.T01:intron 30.0%
ATCTTACGATATGTGTATGT+TGG - Chr7:1042035-1042054 MsG0780035992.01.T01:CDS 30.0%
ATGAGTGACCTAAATTTCAT+AGG - Chr7:1042866-1042885 MsG0780035992.01.T01:intron 30.0%
ATGTTCAAATGAAATTGGGT+TGG - Chr7:1043819-1043838 MsG0780035992.01.T01:intron 30.0%
ATTGCTGCCTTCTTTATATT+TGG - Chr7:1041984-1042003 MsG0780035992.01.T01:CDS 30.0%
CAAACTATGAAGAATTGACA+CGG + Chr7:1043564-1043583 None:intergenic 30.0%
CAGATAAAAGACAAGAATCT+TGG - Chr7:1045129-1045148 MsG0780035992.01.T01:intron 30.0%
CGAAAGAGAAAAGAATCATT+TGG - Chr7:1043980-1043999 MsG0780035992.01.T01:intron 30.0%
GACCAATTATCACTTCTATT+AGG - Chr7:1043264-1043283 MsG0780035992.01.T01:CDS 30.0%
GGTCTATGTTCAAATGAAAT+TGG - Chr7:1043814-1043833 MsG0780035992.01.T01:intron 30.0%
GTGTGTTAGAGTTAGTAAAA+TGG - Chr7:1041764-1041783 MsG0780035992.01.T01:three_prime_UTR 30.0%
GTTCTATACATAACAGCATT+TGG - Chr7:1043333-1043352 MsG0780035992.01.T01:CDS 30.0%
TAAGCACTTAAATTTGGCAT+TGG + Chr7:1044915-1044934 None:intergenic 30.0%
TAGGATAAGATCTGAATTCT+TGG - Chr7:1042110-1042129 MsG0780035992.01.T01:CDS 30.0%
TATACCTTAAACACTCACTT+GGG - Chr7:1044636-1044655 MsG0780035992.01.T01:intron 30.0%
TATTCATGGAAAATCCATTG+AGG - Chr7:1041938-1041957 MsG0780035992.01.T01:CDS 30.0%
TCTACACCTGTTAATATTCA+TGG - Chr7:1041924-1041943 MsG0780035992.01.T01:CDS 30.0%
TGCCAAATTTAAGTGCTTAT+TGG - Chr7:1044916-1044935 MsG0780035992.01.T01:intron 30.0%
TGCTAATTCACAAAAATGAG+GGG + Chr7:1042628-1042647 None:intergenic 30.0%
TGGTATGTATATTCTTCACA+CGG - Chr7:1042004-1042023 MsG0780035992.01.T01:CDS 30.0%
TGTTCAAATGAAATTGGGTT+GGG - Chr7:1043820-1043839 MsG0780035992.01.T01:CDS 30.0%
TTATGTATAGAACAGTGTAG+AGG + Chr7:1043326-1043345 None:intergenic 30.0%
TTCATAGACAAATTAGTCCT+TGG + Chr7:1042773-1042792 None:intergenic 30.0%
TTCTATCTTTCTGTGACAAT+TGG - Chr7:1043767-1043786 MsG0780035992.01.T01:intron 30.0%
TTTGTTTCGACTTAGTGAAT+AGG + Chr7:1043104-1043123 None:intergenic 30.0%
! AAAGTGAGGGGTATATTTAA+AGG - Chr7:1045391-1045410 MsG0780035992.01.T01:exon 30.0%
! AGTATGTAGTTTTTGCGAAT+TGG + Chr7:1043044-1043063 None:intergenic 30.0%
! ATAATTGGTCACAGTTTTCT+TGG + Chr7:1043254-1043273 None:intergenic 30.0%
! CAAAGAATTGGAATTGGTTT+AGG - Chr7:1044795-1044814 MsG0780035992.01.T01:CDS 30.0%
! CATTCCAAACTTTTATGAAC+AGG - Chr7:1043179-1043198 MsG0780035992.01.T01:CDS 30.0%
! CTTGATAATTTGGCAAACAA+TGG - Chr7:1045299-1045318 MsG0780035992.01.T01:CDS 30.0%
! TAAGAAGTTATTGACTGCAT+TGG + Chr7:1042392-1042411 None:intergenic 30.0%
! TCTTTTATCTGAATTTCCAG+AGG + Chr7:1045120-1045139 None:intergenic 30.0%
! TGTTTAAGGTATATGCTTGT+TGG + Chr7:1044629-1044648 None:intergenic 30.0%
! TTCTTTTCTCTTTCGATAAG+CGG + Chr7:1043975-1043994 None:intergenic 30.0%
! TTGGTAATAGTGAAGTTGTT+GGG - Chr7:1043999-1044018 MsG0780035992.01.T01:intron 30.0%
! TTTGGTAATAGTGAAGTTGT+TGG - Chr7:1043998-1044017 MsG0780035992.01.T01:intron 30.0%
! TTTTGGACTTTCTGTTAACA+TGG - Chr7:1042321-1042340 MsG0780035992.01.T01:CDS 30.0%
!! ATTGAGGATCTTTCTAAAAC+TGG - Chr7:1041954-1041973 MsG0780035992.01.T01:CDS 30.0%
!! GCAAGTTTGATTACTTTTAC+TGG - Chr7:1045174-1045193 MsG0780035992.01.T01:intron 30.0%
!!! AGTTTTAGAAAGATCCTCAA+TGG + Chr7:1041955-1041974 None:intergenic 30.0%
!!! ATTTTGCATTGTTGGTTTGT+TGG - Chr7:1044977-1044996 MsG0780035992.01.T01:intron 30.0%
!!! TTGATAGAGACTATTTTGAC+CGG - Chr7:1042991-1043010 MsG0780035992.01.T01:intron 30.0%
!!! TTTTTTTGTTGCTTCTATGG+TGG - Chr7:1042258-1042277 MsG0780035992.01.T01:CDS 30.0%
AAATATACCCCTCACTTTAG+AGG + Chr7:1045389-1045408 None:intergenic 35.0%
AAGCCCTGTTCATAAAAGTT+TGG + Chr7:1043186-1043205 None:intergenic 35.0%
ACATCAATGTTAACTCTCCA+AGG - Chr7:1042753-1042772 MsG0780035992.01.T01:intron 35.0%
ATCTGACAGCTCAAATCAAA+AGG + Chr7:1042527-1042546 None:intergenic 35.0%
CAGCACATAGATACAAATAC+AGG - Chr7:1045243-1045262 MsG0780035992.01.T01:CDS 35.0%
CAGCTTCAAAGAATTGGAAT+TGG - Chr7:1044789-1044808 MsG0780035992.01.T01:CDS 35.0%
CTTTACTACGATTTATCTCG+CGG - Chr7:1042489-1042508 MsG0780035992.01.T01:CDS 35.0%
GACACAACATGTTTATGAGA+TGG - Chr7:1045265-1045284 MsG0780035992.01.T01:CDS 35.0%
GACTTAGTGAATAGGCAAAT+TGG + Chr7:1043096-1043115 None:intergenic 35.0%
GCTCTACAATTGAAACAAGA+TGG - Chr7:1044468-1044487 MsG0780035992.01.T01:intron 35.0%
GGTAATAGAGAGCTAATATG+AGG + Chr7:1044716-1044735 None:intergenic 35.0%
GGTAGAAGATCTGCTATAAA+GGG - Chr7:1044037-1044056 MsG0780035992.01.T01:intron 35.0%
GTACACCTTTGTATAGACAT+AGG - Chr7:1043903-1043922 MsG0780035992.01.T01:CDS 35.0%
TCAATGAGCAGAAAGAAACT+TGG - Chr7:1041840-1041859 MsG0780035992.01.T01:CDS 35.0%
TGAAAAGCGGTACAAAAGTT+TGG + Chr7:1044737-1044756 None:intergenic 35.0%
TGAATAGGCAAATTGGTTGT+AGG + Chr7:1043089-1043108 None:intergenic 35.0%
TGGTAGAAGATCTGCTATAA+AGG - Chr7:1044036-1044055 MsG0780035992.01.T01:intron 35.0%
TGTCACATCATAGTCTCTAA+AGG - Chr7:1042962-1042981 MsG0780035992.01.T01:intron 35.0%
TGTTAGATATAGCTGGTGAT+TGG - Chr7:1043368-1043387 MsG0780035992.01.T01:CDS 35.0%
TTGCTCATACTGATGATTTC+AGG - Chr7:1044071-1044090 MsG0780035992.01.T01:intron 35.0%
TTGGAGAGTTAACATTGATG+TGG + Chr7:1042754-1042773 None:intergenic 35.0%
TTGTCTCAAAACATCAACAC+TGG - Chr7:1045152-1045171 MsG0780035992.01.T01:intron 35.0%
TTTACCCAAGTGAGTGTTTA+AGG + Chr7:1044643-1044662 None:intergenic 35.0%
TTTATAGCAGATCTTCTACC+AGG + Chr7:1044037-1044056 None:intergenic 35.0%
! AGACCATGTGTATCTTCTTT+TGG - Chr7:1043680-1043699 MsG0780035992.01.T01:intron 35.0%
! CAGGTATTGTTAGATATAGC+TGG - Chr7:1043361-1043380 MsG0780035992.01.T01:CDS 35.0%
! CATTTTCTTCATTGAGTCTG+AGG - Chr7:1041863-1041882 MsG0780035992.01.T01:CDS 35.0%
! CCAATACTTTTCATAGCATC+AGG + Chr7:1045023-1045042 None:intergenic 35.0%
! CCTGATGCTATGAAAAGTAT+TGG - Chr7:1045020-1045039 MsG0780035992.01.T01:intron 35.0%
! CTACTTGTGTTACTGTACAA+AGG + Chr7:1044515-1044534 None:intergenic 35.0%
! GCAGAAAGAATGGCTTATTT+TGG - Chr7:1042304-1042323 MsG0780035992.01.T01:CDS 35.0%
! GTTCAAATGAAATTGGGTTG+GGG - Chr7:1043821-1043840 MsG0780035992.01.T01:CDS 35.0%
! TGAAGTGTTATGACATGTGT+CGG + Chr7:1043477-1043496 None:intergenic 35.0%
! TTTTATGAACAGGGCTTAAC+TGG - Chr7:1043189-1043208 MsG0780035992.01.T01:CDS 35.0%
! TTTTGCTTCTTTCGTCGAAT+TGG + Chr7:1043712-1043731 None:intergenic 35.0%
!! ATCTTTCTAAAACTGGTGGT+TGG - Chr7:1041961-1041980 MsG0780035992.01.T01:CDS 35.0%
!! GCTGAAGTATTTTGCATTGT+TGG - Chr7:1044969-1044988 MsG0780035992.01.T01:intron 35.0%
!! GTATTAGTCCTCTAAAGTGA+GGG - Chr7:1045378-1045397 MsG0780035992.01.T01:CDS 35.0%
!! TATTAGTCCTCTAAAGTGAG+GGG - Chr7:1045379-1045398 MsG0780035992.01.T01:CDS 35.0%
!! TCTCTGAAACTGTAAAGTAC+CGG + Chr7:1043013-1043032 None:intergenic 35.0%
!! TGTATTAGTCCTCTAAAGTG+AGG - Chr7:1045377-1045396 MsG0780035992.01.T01:CDS 35.0%
!! TTCGATTTTATCGGTTGCTT+GGG - Chr7:1044821-1044840 MsG0780035992.01.T01:CDS 35.0%
!! TTTCGATTTTATCGGTTGCT+TGG - Chr7:1044820-1044839 MsG0780035992.01.T01:CDS 35.0%
AATTGTAGCATTCACAGCAG+TGG - Chr7:1043793-1043812 MsG0780035992.01.T01:intron 40.0%
ACACTTAGACCTGGAAAAAC+CGG + Chr7:1044690-1044709 None:intergenic 40.0%
ACATTGATGCTAGATCAACG+TGG - Chr7:1042910-1042929 MsG0780035992.01.T01:intron 40.0%
ATGAGGAATACACTTAGACC+TGG + Chr7:1044699-1044718 None:intergenic 40.0%
ATGATTGTGCAAGCTGGAAT+TGG + Chr7:1044567-1044586 None:intergenic 40.0%
CCAAACTCAGCAAACAAACA+TGG + Chr7:1042183-1042202 None:intergenic 40.0%
GACATCGGACACAATACTAA+CGG + Chr7:1043542-1043561 None:intergenic 40.0%
GCATCTCAGCTTCAAAGAAT+TGG - Chr7:1044783-1044802 MsG0780035992.01.T01:CDS 40.0%
GCATTGGATGAACTTGCAAA+AGG + Chr7:1042376-1042395 None:intergenic 40.0%
GCTCCAAAAGAAGATACACA+TGG + Chr7:1043686-1043705 None:intergenic 40.0%
GGCAACCTATGTCTATACAA+AGG + Chr7:1043911-1043930 None:intergenic 40.0%
GGTTACTGCAGGAAATGAAA+TGG - Chr7:1042282-1042301 MsG0780035992.01.T01:CDS 40.0%
GGTTCATTGGCAATAGCAAT+GGG - Chr7:1043854-1043873 MsG0780035992.01.T01:CDS 40.0%
TCACAAGCTTCTTCTGTTCT+TGG - Chr7:1042418-1042437 MsG0780035992.01.T01:CDS 40.0%
TCATTGAGTCTGAGGATAGA+AGG - Chr7:1041871-1041890 MsG0780035992.01.T01:CDS 40.0%
TGAAGAATTGACACGGACAT+CGG + Chr7:1043557-1043576 None:intergenic 40.0%
TGGTTCATTGGCAATAGCAA+TGG - Chr7:1043853-1043872 MsG0780035992.01.T01:CDS 40.0%
TTAAGCATGATTGTGCAAGC+TGG + Chr7:1044573-1044592 None:intergenic 40.0%
TTGTATAGACATAGGTTGCC+AGG - Chr7:1043911-1043930 MsG0780035992.01.T01:CDS 40.0%
TTTCTGCTCATTGAAGTGCA+TGG + Chr7:1041834-1041853 None:intergenic 40.0%
TTTCTTGCTGATGCATACCT+TGG - Chr7:1042445-1042464 MsG0780035992.01.T01:CDS 40.0%
! AGGATAGAAGGATGGCTTTA+GGG - Chr7:1041883-1041902 MsG0780035992.01.T01:CDS 40.0%
! AGTGTTGTTAAATCAGCCTC+TGG - Chr7:1045101-1045120 MsG0780035992.01.T01:intron 40.0%
! CCATGTTTGTTTGCTGAGTT+TGG - Chr7:1042180-1042199 MsG0780035992.01.T01:CDS 40.0%
! GTACAAAGGTTCCATTGACT+TGG + Chr7:1044501-1044520 None:intergenic 40.0%
! TAGAGGTATGTCATTTGCCA+TGG + Chr7:1043309-1043328 None:intergenic 40.0%
! TGAAGTTGTTGGGTTGTATG+AGG - Chr7:1044009-1044028 MsG0780035992.01.T01:intron 40.0%
! TGGTCACAGTTTTCTTGGTT+TGG + Chr7:1043249-1043268 None:intergenic 40.0%
!! AGGTTCCATTGACTTGGATT+AGG + Chr7:1044495-1044514 None:intergenic 40.0%
!! GAGGATCTTTCTAAAACTGG+TGG - Chr7:1041957-1041976 MsG0780035992.01.T01:CDS 40.0%
!! GGTTCCATTGACTTGGATTA+GGG + Chr7:1044494-1044513 None:intergenic 40.0%
!! TTTCTGACACGTGTCACTTT+CGG + Chr7:1044321-1044340 None:intergenic 40.0%
!! TTTTGTTGCTTCTATGGTGG+TGG - Chr7:1042261-1042280 MsG0780035992.01.T01:CDS 40.0%
AAAACCGGCATGCATGTTAC+TGG + Chr7:1044675-1044694 None:intergenic 45.0%
ACTTCCAGTAACATGCATGC+CGG - Chr7:1044668-1044687 MsG0780035992.01.T01:intron 45.0%
ATGCATACCTTGGACGTTAC+TGG - Chr7:1042455-1042474 MsG0780035992.01.T01:CDS 45.0%
ATGCTAGATCAACGTGGTTG+AGG - Chr7:1042916-1042935 MsG0780035992.01.T01:intron 45.0%
ATGGCCCTAATCCAAGTCAA+TGG - Chr7:1044487-1044506 MsG0780035992.01.T01:intron 45.0%
CAAGCTTCTTCTGTTCTTGG+TGG - Chr7:1042421-1042440 MsG0780035992.01.T01:CDS 45.0%
CCAGTGATGCGTTTGAAAAG+CGG + Chr7:1044750-1044769 None:intergenic 45.0%
CTACGATTTATCTCGCGGTA+TGG - Chr7:1042494-1042513 MsG0780035992.01.T01:CDS 45.0%
CTATTGTCCAGTAACGTCCA+AGG + Chr7:1042465-1042484 None:intergenic 45.0%
CTGACATTTCTTTCCCGTGT+TGG - Chr7:1043431-1043450 MsG0780035992.01.T01:CDS 45.0%
GAGGATAGAAGGATGGCTTT+AGG - Chr7:1041882-1041901 MsG0780035992.01.T01:CDS 45.0%
TACACGAGTCGCTCAAGTAT+TGG - Chr7:1043946-1043965 MsG0780035992.01.T01:CDS 45.0%
TATAGACATAGGTTGCCAGG+TGG - Chr7:1043914-1043933 MsG0780035992.01.T01:CDS 45.0%
TGAGTCTGAGGATAGAAGGA+TGG - Chr7:1041875-1041894 MsG0780035992.01.T01:CDS 45.0%
TTAGGGCGTGGTTATACAAG+AGG - Chr7:1041900-1041919 MsG0780035992.01.T01:CDS 45.0%
TTGGAGCTGAGTAGTTAGCA+AGG + Chr7:1044110-1044129 None:intergenic 45.0%
! ATAACAGCATTTGGAGCTGC+AGG - Chr7:1043342-1043361 MsG0780035992.01.T01:CDS 45.0%
!! GTCATTTGCCATGGTTTTGC+AGG + Chr7:1043300-1043319 None:intergenic 45.0%
!! TCTGCTTATGCTGCTTTAGC+TGG - Chr7:1045044-1045063 MsG0780035992.01.T01:intron 45.0%
!!! GGGTTCTGCTTTTGGTTCAT+TGG - Chr7:1043841-1043860 MsG0780035992.01.T01:CDS 45.0%
ACTGTGAGCCTGCAAAACCA+TGG - Chr7:1043289-1043308 MsG0780035992.01.T01:CDS 50.0%
ACTTGAGCGACTCGTGTAAG+AGG + Chr7:1043944-1043963 None:intergenic 50.0%
TGAAGCTGAGATGCACCATG+CGG + Chr7:1044777-1044796 None:intergenic 50.0%
TGTCGGCATCATGTCGATGT+CGG + Chr7:1043460-1043479 None:intergenic 50.0%
! GTTGGGTTGTATGAGGTTCC+TGG - Chr7:1044016-1044035 MsG0780035992.01.T01:intron 50.0%
!! CACCAGAAGCACCTCAACAA+GGG - Chr7:1041805-1041824 MsG0780035992.01.T01:three_prime_UTR 50.0%
!! CCGCTTTTCAAACGCATCAC+TGG - Chr7:1044747-1044766 MsG0780035992.01.T01:CDS 50.0%
!! GCTGCTTTAGCTGGTGGATT+AGG - Chr7:1045053-1045072 MsG0780035992.01.T01:intron 50.0%
!! GCTTATGCTGCTTTAGCTGG+TGG - Chr7:1045047-1045066 MsG0780035992.01.T01:intron 50.0%
!! TCACCAGAAGCACCTCAACA+AGG - Chr7:1041804-1041823 MsG0780035992.01.T01:three_prime_UTR 50.0%
!! TCTATGGTGGTGGTTACTGC+AGG - Chr7:1042271-1042290 MsG0780035992.01.T01:CDS 50.0%
!!! ACATGCATGCCGGTTTTTCC+AGG - Chr7:1044678-1044697 MsG0780035992.01.T01:CDS 50.0%
!!! TTGGGTTGGGGTTCTGCTTT+TGG - Chr7:1043833-1043852 MsG0780035992.01.T01:CDS 50.0%
CGTGTAAGAGGACTTCCACC+TGG + Chr7:1043932-1043951 None:intergenic 55.0%
GTCGATGTCGGACACCAACA+CGG + Chr7:1043448-1043467 None:intergenic 55.0%
GTGCATGGTGTCCCTTGTTG+AGG + Chr7:1041819-1041838 None:intergenic 55.0%
TCGATGTCGGACACCAACAC+GGG + Chr7:1043447-1043466 None:intergenic 55.0%
! GTCCCTTGTTGAGGTGCTTC+TGG + Chr7:1041810-1041829 None:intergenic 55.0%
!! AGAAGGATGGCTTTAGGGCG+TGG - Chr7:1041888-1041907 MsG0780035992.01.T01:CDS 55.0%
CGCATCACTGGTCATCCGCA+TGG - Chr7:1044759-1044778 MsG0780035992.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 1041701 1045482 1041701 ID=MsG0780035992.01;Name=MsG0780035992.01
Chr7 mRNA 1041701 1045482 1041701 ID=MsG0780035992.01.T01;Parent=MsG0780035992.01;Name=MsG0780035992.01.T01;_AED=0.24;_eAED=0.24;_QI=82|1|1|1|1|1|5|136|638
Chr7 exon 1041701 1042731 1041701 ID=MsG0780035992.01.T01:exon:15598;Parent=MsG0780035992.01.T01
Chr7 exon 1043091 1043508 1043091 ID=MsG0780035992.01.T01:exon:15597;Parent=MsG0780035992.01.T01
Chr7 exon 1043820 1043982 1043820 ID=MsG0780035992.01.T01:exon:15596;Parent=MsG0780035992.01.T01
Chr7 exon 1044673 1044890 1044673 ID=MsG0780035992.01.T01:exon:15595;Parent=MsG0780035992.01.T01
Chr7 exon 1045178 1045482 1045178 ID=MsG0780035992.01.T01:exon:15594;Parent=MsG0780035992.01.T01
Chr7 five_prime_UTR 1045401 1045482 1045401 ID=MsG0780035992.01.T01:five_prime_utr;Parent=MsG0780035992.01.T01
Chr7 CDS 1045178 1045400 1045178 ID=MsG0780035992.01.T01:cds;Parent=MsG0780035992.01.T01
Chr7 CDS 1044673 1044890 1044673 ID=MsG0780035992.01.T01:cds;Parent=MsG0780035992.01.T01
Chr7 CDS 1043820 1043982 1043820 ID=MsG0780035992.01.T01:cds;Parent=MsG0780035992.01.T01
Chr7 CDS 1043091 1043508 1043091 ID=MsG0780035992.01.T01:cds;Parent=MsG0780035992.01.T01
Chr7 CDS 1041837 1042731 1041837 ID=MsG0780035992.01.T01:cds;Parent=MsG0780035992.01.T01
Chr7 three_prime_UTR 1041701 1041836 1041701 ID=MsG0780035992.01.T01:three_prime_utr;Parent=MsG0780035992.01.T01
Gene Sequence

>MsG0780035992.01.T01

ATGGATACTTGTGAGATCAAGTCACCAGAAGCACCTCAACAAGGGACACCATGCACTTCAATGAGCAGAAAGAAACTTGGCATTTTCTTCATTGAGTCTGAGGATAGAAGGATGGCTTTAGGGCGTGGTTATACAAGAGGTTCTACACCTGTTAATATTCATGGAAAATCCATTGAGGATCTTTCTAAAACTGGTGGTTGGATTGCTGCCTTCTTTATATTTGGAAATGAAATGGCAGAAAGAATGGCTTATTTTGGACTTTCTGTTAACATGGTAGCCTTTATGTTTTATGTGATGCATAGACCTTTTGCAAGTTCATCCAATGCAGTCAATAACTTCTTAGGAATATCACAAGCTTCTTCTGTTCTTGGTGGATTTCTTGCTGATGCATACCTTGGACGTTACTGGACAATAGCTATCTTTACTACGATTTATCTCGCGGGCTTAACTGGAATAACAATATGTGCAACAATGAGCATTTTTGTGCCAAACCAAGAAAACTGTGACCAATTATCACTTCTATTAGGAAACTGTGAGCCTGCAAAACCATGGCAAATGACATACCTCTACACTGTTCTATACATAACAGCATTTGGAGCTGCAGGTATAAGACCATGTGTATCTTCTTTTGGAGCAGACCAATTCGACGAAAGAAGCAAAAACTACAAATCACATCTTGACAGATTTTTCAACTTGTTCTATCTTTCTGTGACAATTGGTGCAATTGTAGCATTCACAGCAGTGGTCTATGTTCAAATGAAATTGGGTTGGGGTTCTGCTTTTGGTTCATTGGCAATAGCAATGGGAGTATCTAACATGCTTTTCTTTATTGGTACACCTTTGTATAGACATAGGTTGCCAGGTGGAAGTCCTCTTACACGAGTCGCTCAAGTATTGGTTGCCGCTTATCGAAAGAGAAAAGAATCATTTGGTAATAGTGAAGTTGTTGGGTTGTATGAGGTTCCTGGTAGAAGATCTGCTATAAAGGGTAGTCAGAAAATTGCTCATACTGATGATTTCAGGTTTCTTGACAAAGCAGCTCTACAATTGAAACAAGATGGCCCTAATCCAAGTCAATGGAACCTTTGTACAGTAACACAAGTAGAAGAAGTGAAGATCCTTATAAAACTAATTCCAATTCCAGCTTGCACAATCATGCTTAATGTAATCTTAACAGAATTTCTAACTCTCTCAGTCCAACAAGCATATACCTTAAACACTCACTTGGGTAAATTAAAACTTCCAGTAACATGCATGCCGGTTTTTCCAGGTCTAAGTGTATTCCTCATATTAGCTCTCTATTACCAAACTTTTGTACCGCTTTTCAAACGCATCACTGGTCATCCGCATGGTGCATCTCAGCTTCAAAGAATTGGAATTGGTTTAGGAGTTTCGATTTTATCGGTTGCTTGGGCTGCAATCTTCGAAAAGTATAGAAGAAACTATGCTATCAAAAATGAATATGAAGCTAGTTTCTTAACACCAATGCCAAATTTAAGTGCTTATTGGTTATTGATTCAATATTGCTTAATTGGTGTAGCTGAAGTATTTTGCATTGTTGGTTTGTTGGAGTTTTTATATGAAGAAGCACCTGATGCTATGAAAAGTATTGGTTCTGCTTATGCTGCTTTAGCTGGTGGATTAGGTTGTTTTTTTGCAACATTTATAAATAGTGTTGTTAAATCAGCCTCTGGAAATTCAGATAAAAGACAAGAATCTTGGTTGTCTCAAAACATCAACACTGGCAAGTTTGATTACTTTTACTGGGTTCTTACAGCTTTAAGCTTAGTCAACTTCTGTGTCTTCTTATATTCAGCACATAGATACAAATACAGGACACAACATGTTTATGAGATGGAGAACATTAAACTTGATAATTTGGCAAACAATGGGAGCTCTACAACAGTTTCTTTCTAG

Protein sequence

>MsG0780035992.01.T01

MDTCEIKSPEAPQQGTPCTSMSRKKLGIFFIESEDRRMALGRGYTRGSTPVNIHGKSIEDLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFASSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITICATMSIFVPNQENCDQLSLLLGNCEPAKPWQMTYLYTVLYITAFGAAGIRPCVSSFGADQFDERSKNYKSHLDRFFNLFYLSVTIGAIVAFTAVVYVQMKLGWGSAFGSLAIAMGVSNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAYRKRKESFGNSEVVGLYEVPGRRSAIKGSQKIAHTDDFRFLDKAALQLKQDGPNPSQWNLCTVTQVEEVKILIKLIPIPACTIMLNVILTEFLTLSVQQAYTLNTHLGKLKLPVTCMPVFPGLSVFLILALYYQTFVPLFKRITGHPHGASQLQRIGIGLGVSILSVAWAAIFEKYRRNYAIKNEYEASFLTPMPNLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFFATFINSVVKSASGNSDKRQESWLSQNINTGKFDYFYWVLTALSLVNFCVFLYSAHRYKYRTQHVYEMENIKLDNLANNGSSTTVSF*