AlfalfaGEDB | MsG0180005185.01

M. sativa cultivar ZhongmuNo.1 / MsG0180005185.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005185.01.T01	XP_003591873.2	95.007	1482	69	3	1	1478	1	1481	0	2925

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005185.01.T01	Q6BDA0	52.234	940	364	20	1	917	1	878	0	920

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005185.01.T01	G7I511	95.007	1482	69	3	1	1478	1	1481	0.0	2925

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047797.01	MsG0180005185.01	0.830137	3.477662e-55	3.632340e-52
MsG0080047869.01	MsG0180005185.01	0.818412	1.987185e-52	1.486543e-49
MsG0080047944.01	MsG0180005185.01	0.821847	3.247842e-53	2.673077e-50
MsG0080047957.01	MsG0180005185.01	0.851412	9.028262e-61	1.825929e-57
MsG0080047959.01	MsG0180005185.01	0.836150	1.107415e-56	1.383612e-53
MsG0080048402.01	MsG0180005185.01	0.836651	8.257866e-57	1.047229e-53
MsG0080048461.01	MsG0180005185.01	0.856912	2.333264e-62	5.657281e-59
MsG0080048462.01	MsG0180005185.01	0.842927	1.917742e-58	2.952069e-55
MsG0080048463.01	MsG0180005185.01	0.802709	4.933684e-49	2.433495e-46
MsG0080048464.01	MsG0180005185.01	0.827758	1.310857e-54	1.277263e-51

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005185.01.T01	MTR_1g094740	95.007	1482	69	3	1	1478	1	1481	0.0	2925
MsG0180005185.01.T01	MTR_3g075210	45.932	381	168	8	292	635	173	552	4.03e-99	351
MsG0180005185.01.T01	MTR_3g075210	52.326	172	58	2	1328	1475	1397	1568	1.39e-49	194
MsG0180005185.01.T01	MTR_3g075210	43.147	197	71	3	3	197	5	162	7.11e-39	159
MsG0180005185.01.T01	MTR_3g075210	36.800	125	75	3	700	821	766	889	1.55e-15	83.2
MsG0180005185.01.T01	MTR_5g029370	49.246	199	97	1	291	485	233	431	4.46e-57	214
MsG0180005185.01.T01	MTR_5g029370	49.246	199	97	1	291	485	233	431	4.46e-57	214
MsG0180005185.01.T01	MTR_1g038370	44.681	188	100	1	291	474	132	319	1.66e-50	189
MsG0180005185.01.T01	MTR_1g038400	45.213	188	99	1	291	474	172	359	1.92e-50	189
MsG0180005185.01.T01	MTR_2g047130	40.426	235	136	3	295	528	261	492	4.39e-43	172

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005185.01.T01	AT5G04240	52.234	940	364	20	1	917	1	878	0.0	920
MsG0180005185.01.T01	AT5G04240	56.650	203	82	3	1278	1474	1137	1339	2.63e-66	248
MsG0180005185.01.T01	AT3G48430	47.154	369	156	8	297	635	206	565	9.34e-96	339
MsG0180005185.01.T01	AT3G48430	63.717	113	41	0	1363	1475	1243	1355	1.54e-46	184
MsG0180005185.01.T01	AT3G48430	46.032	189	79	4	9	194	13	181	1.33e-33	142
MsG0180005185.01.T01	AT3G48430	34.286	140	87	4	700	836	737	874	6.35e-15	81.3
MsG0180005185.01.T01	AT5G46910	47.317	205	103	2	275	474	230	434	6.77e-56	207
MsG0180005185.01.T01	AT5G46910	47.317	205	103	2	275	474	230	434	1.22e-55	209
MsG0180005185.01.T01	AT3G48430	63.717	113	41	0	1363	1475	884	996	4.55e-47	184
MsG0180005185.01.T01	AT3G48430	31.401	207	119	6	451	635	1	206	1.12e-18	93.2

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Find 125 sgRNAs with CRISPR-Local

Find 649 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTAAATTGGAGATT+TGG	0.249778	1:+88206852	None:intergenic
AAACACGATTCTGCATGACT+TGG	0.518199	1:+88205982	None:intergenic
AAACCCTAAATTGGAGATTT+GGG	0.250952	1:+88206853	None:intergenic
AAAGCAAAGGCATAATTTCC+AGG	0.424207	1:+88205634	None:intergenic
AAAGGACTGATTATAAGAGT+AGG	0.515773	1:-88206086	MsG0180005185.01.T01:exon
AAAGGCATAATTTCCAGGAA+CGG	0.617478	1:+88205639	None:intergenic
AAATCCCCAATTGGCTTGAA+GGG	0.528256	1:-88206701	MsG0180005185.01.T01:exon
AAATTGGGAATACTATGATG+AGG	0.671363	1:+88206898	None:intergenic
AACACGATTCTGCATGACTT+GGG	0.483343	1:+88205983	None:intergenic
AACATACCAATGTATATCAT+GGG	0.550555	1:+88205748	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAAGCAGAATCGTGA+AGG	+	Chr1:88204440-88204459	None:intergenic	30.0%
AAAACCCTAAATTGGAGATT+TGG	+	Chr1:88198226-88198245	None:intergenic	30.0%
AAAACTGAGACAGAATAATC+TGG	+	Chr1:88204269-88204288	None:intergenic	30.0%
AAACCCTAAATTGGAGATTT+GGG	+	Chr1:88198225-88198244	None:intergenic	30.0%
AAAGATGAGAGTAACAAACA+AGG	-	Chr1:88207049-88207068	MsG0180005185.01.T01:exon	30.0%
AAAGGACTGATTATAAGAGT+AGG	-	Chr1:88198989-88199008	MsG0180005185.01.T01:CDS	30.0%
AAATTGGGAATACTATGATG+AGG	+	Chr1:88198180-88198199	None:intergenic	30.0%
AACTCATATGGCAATTATCA+AGG	+	Chr1:88206382-88206401	None:intergenic	30.0%
AACTTAGATTTAGATGGTGA+AGG	-	Chr1:88205285-88205304	MsG0180005185.01.T01:intron	30.0%
AACTTGATGAATGTGAAGAT+TGG	-	Chr1:88204599-88204618	MsG0180005185.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	88197885	88207212	88197885	ID=MsG0180005185.01;
Chr1	mRNA	88197885	88207212	88197885	ID=MsG0180005185.01.T01;Parent=MsG0180005185.01
Chr1	exon	88197885	88200633	88197885	ID=MsG0180005185.01.T01.exon;Parent=MsG0180005185.01.T01
Chr1	CDS	88198379	88200633	88198379	ID=MsG0180005185.01.T01.cds;Parent=MsG0180005185.01.T01
Chr1	CDS	88201145	88201336	88201145	ID=MsG0180005185.01.T01.cds;Parent=MsG0180005185.01.T01
Chr1	exon	88201145	88201336	88201145	ID=MsG0180005185.01.T01.exon;Parent=MsG0180005185.01.T01
Chr1	CDS	88202001	88202539	88202001	ID=MsG0180005185.01.T01.cds;Parent=MsG0180005185.01.T01
Chr1	exon	88202001	88202539	88202001	ID=MsG0180005185.01.T01.exon;Parent=MsG0180005185.01.T01
Chr1	CDS	88203017	88203167	88203017	ID=MsG0180005185.01.T01.cds;Parent=MsG0180005185.01.T01
Chr1	exon	88203017	88203167	88203017	ID=MsG0180005185.01.T01.exon;Parent=MsG0180005185.01.T01
Chr1	CDS	88204013	88204080	88204013	ID=MsG0180005185.01.T01.cds;Parent=MsG0180005185.01.T01
Chr1	exon	88204013	88204080	88204013	ID=MsG0180005185.01.T01.exon;Parent=MsG0180005185.01.T01
Chr1	CDS	88204248	88204326	88204248	ID=MsG0180005185.01.T01.cds;Parent=MsG0180005185.01.T01
Chr1	exon	88204248	88204326	88204248	ID=MsG0180005185.01.T01.exon;Parent=MsG0180005185.01.T01
Chr1	CDS	88205584	88206736	88205584	ID=MsG0180005185.01.T01.cds;Parent=MsG0180005185.01.T01
Chr1	exon	88205584	88207212	88205584	ID=MsG0180005185.01.T01.exon;Parent=MsG0180005185.01.T01

Gene Sequence

>MsG0180005185.01.T01

ATGGGTAATGCTGAAATCCCCAATTGGCTTGAAGGGTTGCCACTGGCACCTGAATTTCGACCAACTGATACTGAATTTTCCGACCCAATTGCTTATATCTCAAAGATTGAGCAGAAAGCTGGTAAATTTGGGATATGTAAGATTATCCCACCATTGCCCAAGCCTTCAAAAAAATATGTTTTTTCTAATTTGAATAAGTCCCTTTTGAAGCGGCCTGAATTGGGGCCAGATATTAGTTCTTTGGGTGCTGGTAATTCTTGGAAAACGGGTTCTGGGGATAGTAGTAATGATGGAGTGTCGCGGGCCGTGTTTACTACAAGGCAACAGGAAGTGGGACAAAATGTCAAAAAAACTAAAGGGGTTGTTCAGAAGTCAATGGCATGTGTCCATAAGCAAGTTTGGCAAAGTGGAGAAGTTTATACAATTGAACAGTTTGAGTCTAAATCGAAGACTTTTGCCAGAAGCGTTTTGGGTCCGGCGAAGGATGTTTCTCCATTGGTTGTAGAGGCCATGTTTTGGAAGGCAGCTTCAGAGAAGCCTATTTATGTGGAGTATGCTAATGACGTGCCTGGTTCGGCGTTTGGAGAATCACAGGGTCAATTTTATCGTAGTCATCGAAGGCAACGGAAAAGGACTGATTATAAGAGTAGGGTAGATAGCTCTGTTTGTAAAGAAACTGAAATGGGTGGTGTAAATGATACACAAAATAATGAGTCTAAAGGCGTTCCTTCCCCAAGTCATGCAGAATCGTGTTTAGAGACGTCTAAATCAGCTTTGACTTTGTCAACATCTACACCAAATGAGGCTTCACAGCCTTCTAAGGAGATGATTTCAGATGCTGACAATGATATGCAAGGCACTGCTGGTTGGAAGCTTTCAAATAGTCCTTGGAATCTGCAAGTTATTCCTCGTGCTTCAGGCTCACTAACACGTTTCATGCCAGATGATATTCCTGGCGTTACTTCACCCATGATATACATTGGTATGTTGTTTAGTTGGTTTGCCTGGCATGTAGAGGATCATGAACTTCACAGCTTGAATTTTCTTCACACTGGCTCATCAAAGACTTGGTACTCCGTTCCTGGAAATTATGCCTTTGCTTTTGAGGAAGTCATCCGCACAGAGGGTTATGGTGGTGATGTTGATCAATTAGCTGCTTTGAAACTTTTGGGCGAAAAAACTACTCTTTTATCACCTGAGGTAGTTGTTGCATCTGGGATTCCTTGCTGCAGGTTAGTACAGAATCCGGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCACGGTTTTAACTGTGGGGAGGCTGCTAACTTTGGGACTCCACAATGGCTTGGCATAGCTAAAGAAGCTGCAGTGCGTAGAGCTACAATGAATCATCTTCCTATGCTCTCCCATCAGCAACTGCTTTACTTGCTGACCATGTCTTTTATTTCAAGTGTGCCAAGAACACTATTACCTGGTGTGCGCAGTTCTCGTCTGAGAGACCGTCAGAAAGAAGAAAGAGAGATTCTAGTAAAACAGGCTTTTATAGAAGATATGCTGCACGAAAACAAGCTGCTATCCATTCTTCTTGGAAAAGAAGCTACTAAAGAAGTTGTTTTATGGAATGTTGATTTACTACCAGATTCTGGCAAATATCGCCAGTTGCCTGATTTAGCTTCTACTTCTGGAACCTATATGGCGGACATGTCAAATGATAATATTAGTTCTGCTGATAAGAGTAGCCATTGTCTGCTCGATGAGATGAGTTTGTACATGGAGAATCTGACTGATTCAGATGTTGGCTATGATGATCTTCCATGTCACTTCCAAACTGATTCAGGAGCATTGGTTTGTGTGGGTTGTGGAATACTTGGTTTTCCATTTATGACATTAATACAACCAACTGAGAAATTGATAATGGAACTTCCTGATAATCATCTAGTTGAAGATTCCTCTCTGAACTCTGTTGGCTCCCTTCATAGTGCAGTCTCAAGGGATCTTTCTGTTTCTGAACTTGCTTCTGCAAAGGACTTGCCGGATCAGTCATTGAACGAGTGCAATAAATGTTGGAACACCTCCAGTACATTTTTGAAGCCACGGATTTTCTGCTTGGAGCATGCTGTTCAGGTTGTGGAGATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGACTATCCGAAAATAAAGGCACATGCCAGGGCAGTTGCAGAAGAGATACAAAGTGCTTTTGATTATAACGAGGTTCCAATGGATATTGCATCCCCAGAAAATTTGGCTTTGATAGATCTGGCAATTGATGGTAAAGAACTTGATGAATGTGAAGATTGGACATCTAAACTAGGTCTTAATCTGCGGTTTTGTGTCAATAATATAAACAAATCTCCATGTAAACAAGTTCCTTTTACGCTAGCATTGGGGATGCAGTTCTATGATAAACGTCCTGGTTTATCTTTAAATTGGCATTCACAGAAAGCTCGATCTAAAAGGTCAAATCGTTTAGCTCAGTCTAAACCTGACAACATTCAGAGAATGAAGGATGATCAATTGCAGGAAAGAATTGATGGCTCCACTGCTGAAAAGAAACTGCTTCAATATTCAAGGAGAAAATTCAAGCCAAAGCAAAGTTGTTTCTCTGTAGCAAGCACGGTCTGTGAATCCCATGAGAAGTCCAAAAATGTGTCAGCTGTTTTGAGTGCGGAGCATTATCAATTTGTTTCTAAAGATGAGCTTGACACAGACAATTTCAGGAGTGATTGTGCATTGTCCCGTGGCTCTGCTTCTGCTGCAATGACTCCATTGCATAATGAAATCCAGAATGCTGAAGCTCCCACTAGTATGAGTTTGAATACTAGTGTCTCGGAAAAATGCAGCATAGAGAACCAGGATTGTCAGAACAATAAATATTCTGGCTCACTTACAAATGGAATAGACAAAAATGTCGATGTGTTTGGAAACAACCAAATTACTGAAGCCATTGGTAGCAAGTGTGATAACTTAGATTTAGATGGTGAAGGGTATCAAGAACATCAGTCTGCATGCAAAAGCAACAGTGAAGCTGTTTTATCTACTGCTTCATTGGTAAACCAAACTGCTCTCGCTACTGTGGATGGAAGTTTTGAAAGTCCAATTAATAACCAGGCCGAAGAAAGGGTTAGCAATTCTATGTCATTGAAAGAGACAACTGAGGGAGAAAGTAAGTTTTTGACTGAAATGGACGAGGAACCTCTAAATGATGATAAAGAAATGAGTGAACATGCTCCTACTGCAGACGTTTGTGAAATTCCAAGAGAGCTTTATGCTTCTGCAAACTTCCATAATACAGTAAACTTGGATGCTGAGATGCAGCAAGAACGACAAGTTGGAGAAAGTGGCGAACAGGAAATAATTCAGTCCACTCATATTTCCACAAAACAATTGTGTGAATCTACAAGTGGGGAATATGCAAAGGGATTGCACGATGAAGTGATTTTGGAGTCTTCAAAGCAGAGTCTGGTCCAAAACGAGAATATAACTAATGAGGAACATGTATCTAGTTATGTTGCAAAAGGCGACAATAGAAGTATAACCATATCAGAAATAGGATGTTCTGAAGTTTCAGCAGAAACCTGTCCCGAAGAAGACTCATGTATTCAATTTGTTTCGAATACTGAAAAGGAAATGGAAATCCAACCCATTACTAGAGTTGATGAGGAACTCTCTACATCAATCCAGGAATGTTCTCAAACCGAGAAAAAGACGGGTGGCAGAGAAAATGTAAATGGAAGTGAAGTTGATTTGTCACAAGATGATGGGGAGCTGGAAAGCTGTGAGTTGACTACAGAAGTTCCCAGATCAAATACTGGGAAGAAAAAAAAGAGGAAAATGGAAGACACGGAAAAGAACCAATTTGATTGCTATGACTTTATAAGAAGTCCGTGTGAGAGGCTGAGGCCAAGAACTGAGAAGATTGCTACAGGCAAAAGTGTAGGGGACAACAGCCAAAATGAGGAGGAAAATCCAGTAGCTAAAAGGACACGGAAACCTGCCGAAGCTTCAGTTCCTCGCAAGGATAAAAAATCCAATGTTAAAAGGCCGCATAAGTGTGACCTTGATAATTGCCATATGAGTTTCACCACCAAGGCTGAGTTACAGTTGCACAAACGTAACCTTTGCCCACATGAAGGGTGCGGTAAGAAATTCAGTTCCCACAAATACGCATTGATTCACCAGCGCGTTCATGAGGATGATAGGCCCTTTAAATGCACATGGAAAGGTTGTTCCATGTCATTCAAGTGGTCATGGGCTAGGACAGAGCATCTAAGGGTGCATACTGGGGAGAAGCCTTATCAATGTAAGGTTGAGGGCTGCGGTCTTTCTTTCAGGTTCATATCAGATTTTAGCAGGCACAGGCGGAAAACAGGACACTATGTGAAATCTCCTGCTTGA

Protein sequence

>MsG0180005185.01.T01

MGNAEIPNWLEGLPLAPEFRPTDTEFSDPIAYISKIEQKAGKFGICKIIPPLPKPSKKYVFSNLNKSLLKRPELGPDISSLGAGNSWKTGSGDSSNDGVSRAVFTTRQQEVGQNVKKTKGVVQKSMACVHKQVWQSGEVYTIEQFESKSKTFARSVLGPAKDVSPLVVEAMFWKAASEKPIYVEYANDVPGSAFGESQGQFYRSHRRQRKRTDYKSRVDSSVCKETEMGGVNDTQNNESKGVPSPSHAESCLETSKSALTLSTSTPNEASQPSKEMISDADNDMQGTAGWKLSNSPWNLQVIPRASGSLTRFMPDDIPGVTSPMIYIGMLFSWFAWHVEDHELHSLNFLHTGSSKTWYSVPGNYAFAFEEVIRTEGYGGDVDQLAALKLLGEKTTLLSPEVVVASGIPCCRLVQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLGIAKEAAVRRATMNHLPMLSHQQLLYLLTMSFISSVPRTLLPGVRSSRLRDRQKEEREILVKQAFIEDMLHENKLLSILLGKEATKEVVLWNVDLLPDSGKYRQLPDLASTSGTYMADMSNDNISSADKSSHCLLDEMSLYMENLTDSDVGYDDLPCHFQTDSGALVCVGCGILGFPFMTLIQPTEKLIMELPDNHLVEDSSLNSVGSLHSAVSRDLSVSELASAKDLPDQSLNECNKCWNTSSTFLKPRIFCLEHAVQVVEMLQSKGGANVLIICHSDYPKIKAHARAVAEEIQSAFDYNEVPMDIASPENLALIDLAIDGKELDECEDWTSKLGLNLRFCVNNINKSPCKQVPFTLALGMQFYDKRPGLSLNWHSQKARSKRSNRLAQSKPDNIQRMKDDQLQERIDGSTAEKKLLQYSRRKFKPKQSCFSVASTVCESHEKSKNVSAVLSAEHYQFVSKDELDTDNFRSDCALSRGSASAAMTPLHNEIQNAEAPTSMSLNTSVSEKCSIENQDCQNNKYSGSLTNGIDKNVDVFGNNQITEAIGSKCDNLDLDGEGYQEHQSACKSNSEAVLSTASLVNQTALATVDGSFESPINNQAEERVSNSMSLKETTEGESKFLTEMDEEPLNDDKEMSEHAPTADVCEIPRELYASANFHNTVNLDAEMQQERQVGESGEQEIIQSTHISTKQLCESTSGEYAKGLHDEVILESSKQSLVQNENITNEEHVSSYVAKGDNRSITISEIGCSEVSAETCPEEDSCIQFVSNTEKEMEIQPITRVDEELSTSIQECSQTEKKTGGRENVNGSEVDLSQDDGELESCELTTEVPRSNTGKKKKRKMEDTEKNQFDCYDFIRSPCERLRPRTEKIATGKSVGDNSQNEEENPVAKRTRKPAEASVPRKDKKSNVKRPHKCDLDNCHMSFTTKAELQLHKRNLCPHEGCGKKFSSHKYALIHQRVHEDDRPFKCTWKGCSMSFKWSWARTEHLRVHTGEKPYQCKVEGCGLSFRFISDFSRHRRKTGHYVKSPA*