AlfalfaGEDB | MsG0180005262.01

M. sativa cultivar ZhongmuNo.1 / MsG0180005262.01

KEGG: K02138
GO: GO:0000276 GO:0015078 GO:0015986
PFAM: PF05873

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005262.01.T01	XP_003591975.1	89.222	167	5	1	1	154	1	167	5.99E-102	301

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005262.01.T01	Q9FT52	73.054	167	32	1	1	154	1	167	4.16E-86	253

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005262.01.T01	G7I9M9	89.222	167	5	1	1	154	1	167	2.86e-102	301

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180003115.01	MsG0180005262.01	0.803681	3.104227e-49	1.569669e-46
MsG0180005262.01	MsG0180005337.01	0.814680	1.362075e-51	9.199114e-49
MsG0180005262.01	MsG0380016622.01	0.806267	8.939546e-50	4.831180e-47
MsG0180005262.01	MsG0480022960.01	0.808240	3.413075e-50	1.941468e-47
MsG0180005262.01	MsG0480023387.01	0.827315	1.674723e-54	1.611095e-51
MsG0180005262.01	MsG0480023769.01	0.849244	3.661390e-60	6.898988e-57
MsG0180005262.01	MsG0480023970.01	0.801013	1.099833e-48	5.196761e-46
MsG0180005262.01	MsG0680035577.01	0.840894	6.604223e-58	9.541578e-55
MsG0180005262.01	MsG0780040050.01	0.801120	1.045780e-48	4.954557e-46
MsG0180005262.01	MsG0780040511.01	0.808901	2.465798e-50	1.427046e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005262.01.T01	MTR_1g095830	89.222	167	5	1	1	154	1	167	7.26e-106	301
MsG0180005262.01.T01	MTR_1g095830	100.000	119	0	0	1	119	1	119	3.55e-85	247

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005262.01.T01	AT3G52300	73.054	167	32	1	1	154	1	167	4.24e-87	253
MsG0180005262.01.T01	AT3G52300	78.704	108	23	0	1	108	1	108	1.59e-61	187

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Find 44 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAATTGGCACTCGTT+TGG	0.433018	1:-89301599	MsG0180005262.01.T01:CDS
AAAGCGAAAGCGAAAATGAG+CGG	0.621372	1:-89302533	MsG0180005262.01.T01:exon
AAAGTACTCATCTGCTGTCA+TGG	0.536378	1:+89299364	None:intergenic
AAATTCACGACGAGCTTCAT+CGG	0.482178	1:+89302430	None:intergenic
AAGCCGGGAAGAAGATCGAT+TGG	0.530458	1:-89302478	MsG0180005262.01.T01:CDS
AATAAATTGTTGTGTTTGTC+TGG	0.357169	1:-89299050	MsG0180005262.01.T01:three_prime_UTR
ACAGATGTTGCATTCAAAGC+CGG	0.489390	1:-89302494	MsG0180005262.01.T01:CDS
ACGATAGTGTCAAGGTGCGA+AGG	0.595692	1:-89302611	None:intergenic
ACTCGAAACAAAGTTCAGCC+AGG	0.598938	1:-89302369	MsG0180005262.01.T01:intron
AGCAATTTGATGAGGAGATT+AGG	0.438102	1:-89299319	MsG0180005262.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAATCTGAACGTTTGAAA+AGG	-	Chr1:89302075-89302094	MsG0180005262.01.T01:intron	30.0%
AATTATATAACTGAACTGGC+TGG	+	Chr1:89301155-89301174	None:intergenic	30.0%
AGATTATGTATTCAGTTACG+AGG	-	Chr1:89299672-89299691	MsG0180005262.01.T01:CDS	30.0%
AGCATCTAAGAACAAAATGA+AGG	+	Chr1:89299302-89299321	None:intergenic	30.0%
ATGCACGATTAATAAATGCA+AGG	+	Chr1:89301658-89301677	None:intergenic	30.0%
ATTGAATGAGGCAAAGTTAT+AGG	+	Chr1:89301538-89301557	None:intergenic	30.0%
ATTTCCCAACATCATTACAA+AGG	+	Chr1:89299538-89299557	None:intergenic	30.0%
CGAATGAGACAAAAAGATAT+TGG	+	Chr1:89301050-89301069	None:intergenic	30.0%
CTATAATATTCCCAGTCTAT+GGG	+	Chr1:89299961-89299980	None:intergenic	30.0%
CTGATACTTAATAGCTTGAA+CGG	+	Chr1:89301217-89301236	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	89298974	89302628	89298974	ID=MsG0180005262.01;Name=MsG0180005262.01
Chr1	mRNA	89298974	89302628	89298974	ID=MsG0180005262.01.T01;Parent=MsG0180005262.01;Name=MsG0180005262.01.T01;_AED=0.41;_eAED=0.41;_QI=88\|0.75\|0.8\|1\|1\|1\|5\|243\|182
Chr1	exon	89298974	89299399	89298974	ID=MsG0180005262.01.T01:exon:17230;Parent=MsG0180005262.01.T01
Chr1	exon	89299516	89299563	89299516	ID=MsG0180005262.01.T01:exon:17229;Parent=MsG0180005262.01.T01
Chr1	exon	89299653	89299717	89299653	ID=MsG0180005262.01.T01:exon:17228;Parent=MsG0180005262.01.T01
Chr1	exon	89301572	89301653	89301572	ID=MsG0180005262.01.T01:exon:17227;Parent=MsG0180005262.01.T01
Chr1	exon	89302370	89302628	89302370	ID=MsG0180005262.01.T01:exon:17226;Parent=MsG0180005262.01.T01
Chr1	five_prime_UTR	89302541	89302628	89302541	ID=MsG0180005262.01.T01:five_prime_utr;Parent=MsG0180005262.01.T01
Chr1	CDS	89302370	89302540	89302370	ID=MsG0180005262.01.T01:cds;Parent=MsG0180005262.01.T01
Chr1	CDS	89301572	89301653	89301572	ID=MsG0180005262.01.T01:cds;Parent=MsG0180005262.01.T01
Chr1	CDS	89299653	89299717	89299653	ID=MsG0180005262.01.T01:cds;Parent=MsG0180005262.01.T01
Chr1	CDS	89299516	89299563	89299516	ID=MsG0180005262.01.T01:cds;Parent=MsG0180005262.01.T01
Chr1	CDS	89299217	89299399	89299217	ID=MsG0180005262.01.T01:cds;Parent=MsG0180005262.01.T01
Chr1	three_prime_UTR	89298974	89299216	89298974	ID=MsG0180005262.01.T01:three_prime_utr;Parent=MsG0180005262.01.T01

Gene Sequence

>MsG0180005262.01.T01

ATGAGCGGAACAGTGAAAAAAGTTACAGATGTTGCATTCAAAGCCGGGAAGAAGATCGATTGGGACGGGATGGCTAAGCTTCTCGTCACCGATGAAGCTCGTCGTGAATTTTTCAATCTTCGTCGCGCTTTCGACGAAGTTAACACTCAACTCGAAACAAAGTTCAGCCAGGAGCCTGAGCCCATAGACTGGGAATATTATAGAAAAGGAATTGGCACTCGTTTGGTGGATATGTACAAGCAGCATTATGAGAGCATTGAGATCCCCAAGTTTGTTGACACAGTAACTCCTCAATATAAGCCTAAATTTGATGCACTGTTGGTTGAGCTTAAGGAAGCAGAGGAGAAATCTCTGAAGAATCTGAACAAAAGGATTTCTACCATGACAGCAGATGAGTACTTTGCCGAGCATCCTGAGCTGAAGAAGCAATTTGATGAGGAGATTAGGAACGATAACTGGGCTATTCACACTACAAAACTGAGCAAAACGCCTGAAGTTGATGTTTTCCTTGCTGGTTTAATAAATAATAACTACATTATTTTTTTGTAA

Protein sequence

>MsG0180005262.01.T01

MSGTVKKVTDVAFKAGKKIDWDGMAKLLVTDEARREFFNLRRAFDEVNTQLETKFSQEPEPIDWEYYRKGIGTRLVDMYKQHYESIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKNLNKRISTMTADEYFAEHPELKKQFDEEIRNDNWAIHTTKLSKTPEVDVFLAGLINNNYIIFL*