Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480023970.01.T01 | XP_003631001.1 | 100 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 1.01E-96 | 285 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480023970.01.T01 | P46293 | 94.286 | 140 | 8 | 0 | 1 | 140 | 6 | 145 | 2.75E-93 | 268 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480023970.01.T01 | G7LBJ0 | 100.000 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 4.80e-97 | 285 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048922.01 | MsG0480023970.01 | 0.818575 | 1.824640e-52 | 1.370961e-49 |
MsG0080048933.01 | MsG0480023970.01 | 0.897102 | 1.945681e-76 | 2.165459e-72 |
MsG0180000118.01 | MsG0480023970.01 | 0.809719 | 1.646867e-50 | 9.741839e-48 |
MsG0180001488.01 | MsG0480023970.01 | 0.850519 | 1.611567e-60 | 3.164791e-57 |
MsG0180001829.01 | MsG0480023970.01 | 0.807091 | 5.985628e-50 | 3.303926e-47 |
MsG0180001837.01 | MsG0480023970.01 | 0.827793 | 1.285522e-54 | 1.253818e-51 |
MsG0180002810.01 | MsG0480023970.01 | 0.819214 | 1.306385e-52 | 9.990390e-50 |
MsG0180003115.01 | MsG0480023970.01 | 0.824085 | 9.768560e-54 | 8.565965e-51 |
MsG0180003313.01 | MsG0480023970.01 | 0.839822 | 1.258827e-57 | 1.759123e-54 |
MsG0180003729.01 | MsG0480023970.01 | 0.803748 | 3.006754e-49 | 1.523027e-46 |
MsG0180003897.01 | MsG0480023970.01 | 0.845776 | 3.289073e-59 | 5.541903e-56 |
MsG0180004607.01 | MsG0480023970.01 | 0.865426 | 5.957827e-65 | 1.937347e-61 |
MsG0180004622.01 | MsG0480023970.01 | 0.842926 | 1.919064e-58 | 2.953983e-55 |
MsG0180004625.01 | MsG0480023970.01 | 0.823221 | 1.556295e-53 | 1.331839e-50 |
MsG0180005262.01 | MsG0480023970.01 | 0.801013 | 1.099833e-48 | 5.196761e-46 |
MsG0180005361.01 | MsG0480023970.01 | 0.888000 | 8.696606e-73 | 6.618076e-69 |
MsG0180005366.01 | MsG0480023970.01 | 0.881653 | 2.007868e-70 | 1.186073e-66 |
MsG0180005573.01 | MsG0480023970.01 | 0.817851 | 2.661062e-52 | 1.960043e-49 |
MsG0280010801.01 | MsG0480023970.01 | 0.824200 | 9.181567e-54 | 8.077638e-51 |
MsG0280011060.01 | MsG0480023970.01 | 0.841101 | 5.829015e-58 | 8.474441e-55 |
MsG0280011149.01 | MsG0480023970.01 | 0.818614 | 1.787809e-52 | 1.344687e-49 |
MsG0280011234.01 | MsG0480023970.01 | 0.840001 | 1.130744e-57 | 1.589181e-54 |
MsG0280011308.01 | MsG0480023970.01 | 0.846376 | 2.257509e-59 | 3.877976e-56 |
MsG0380014575.01 | MsG0480023970.01 | -0.817749 | 2.805962e-52 | 2.061039e-49 |
MsG0480019165.01 | MsG0480023970.01 | 0.879362 | 1.326168e-69 | 7.169506e-66 |
MsG0480019632.01 | MsG0480023970.01 | 0.848510 | 5.854223e-60 | 1.076925e-56 |
MsG0480020895.01 | MsG0480023970.01 | 0.874524 | 6.314097e-68 | 2.851077e-64 |
MsG0480021159.01 | MsG0480023970.01 | 0.817029 | 4.075897e-52 | 2.935320e-49 |
MsG0480021279.01 | MsG0480023970.01 | 0.810841 | 9.432082e-51 | 5.747234e-48 |
MsG0480022363.01 | MsG0480023970.01 | 0.808084 | 3.684793e-50 | 2.087318e-47 |
MsG0480022789.01 | MsG0480023970.01 | 0.883209 | 5.443701e-71 | 3.419048e-67 |
MsG0480023149.01 | MsG0480023970.01 | 0.807225 | 5.608394e-50 | 3.106548e-47 |
MsG0480023467.01 | MsG0480023970.01 | 0.896233 | 4.488495e-76 | 4.813545e-72 |
MsG0480023691.01 | MsG0480023970.01 | 0.824122 | 9.577579e-54 | 8.407150e-51 |
MsG0480023774.01 | MsG0480023970.01 | 0.803983 | 2.686388e-49 | 1.369076e-46 |
MsG0480023970.01 | MsG0580024369.01 | 0.869500 | 2.955478e-66 | 1.111814e-62 |
MsG0480023970.01 | MsG0580024481.01 | 0.823250 | 1.532245e-53 | 1.312261e-50 |
MsG0480023970.01 | MsG0580024738.01 | 0.806699 | 7.247610e-50 | 3.960030e-47 |
MsG0480023970.01 | MsG0580025073.01 | 0.903289 | 4.046417e-79 | 5.952580e-75 |
MsG0480023970.01 | MsG0580025750.01 | 0.845760 | 3.322354e-59 | 5.595192e-56 |
MsG0480023970.01 | MsG0580028561.01 | 0.831885 | 1.295067e-55 | 1.424343e-52 |
MsG0480023970.01 | MsG0580029132.01 | 0.834477 | 2.930169e-56 | 3.481524e-53 |
MsG0480023970.01 | MsG0580029284.01 | 0.802162 | 6.395525e-49 | 3.110874e-46 |
MsG0480023970.01 | MsG0580029702.01 | 0.900765 | 5.279356e-78 | 6.921322e-74 |
MsG0480023970.01 | MsG0580029703.01 | 0.829102 | 6.211551e-55 | 6.294666e-52 |
MsG0480023970.01 | MsG0580030073.01 | 0.898102 | 7.367367e-77 | 8.584791e-73 |
MsG0480023970.01 | MsG0680031763.01 | 0.883129 | 5.826973e-71 | 3.648446e-67 |
MsG0480023970.01 | MsG0680032770.01 | 0.824566 | 7.528713e-54 | 6.693834e-51 |
MsG0480023970.01 | MsG0680034604.01 | 0.805576 | 1.248740e-49 | 6.629891e-47 |
MsG0480023970.01 | MsG0680035848.01 | 0.808695 | 2.729739e-50 | 1.571217e-47 |
MsG0480023970.01 | MsG0780038383.01 | 0.825179 | 5.399036e-54 | 4.885254e-51 |
MsG0480023970.01 | MsG0780040062.01 | 0.810439 | 1.152002e-50 | 6.943983e-48 |
MsG0480023970.01 | MsG0780040782.01 | 0.838388 | 2.962816e-57 | 3.962278e-54 |
MsG0480023970.01 | MsG0780041058.01 | 0.830567 | 2.731630e-55 | 2.888712e-52 |
MsG0480023970.01 | MsG0780041147.01 | 0.856720 | 2.657519e-62 | 6.401288e-59 |
MsG0480023970.01 | MsG0780041332.01 | 0.868334 | 7.054484e-66 | 2.542037e-62 |
MsG0480023970.01 | MsG0780041522.01 | 0.817626 | 2.991727e-52 | 2.189902e-49 |
MsG0480023970.01 | MsG0880042125.01 | 0.867389 | 1.418572e-65 | 4.945153e-62 |
MsG0480023970.01 | MsG0880042209.01 | 0.885593 | 7.110615e-72 | 4.910447e-68 |
MsG0480023970.01 | MsG0880042517.01 | 0.830252 | 3.261395e-55 | 3.417822e-52 |
MsG0480023970.01 | MsG0880043517.01 | 0.876034 | 1.923803e-68 | 9.185852e-65 |
MsG0480023970.01 | MsG0880043770.01 | 0.841220 | 5.421856e-58 | 7.912058e-55 |
MsG0480023970.01 | MsG0880044003.01 | 0.845290 | 4.452295e-59 | 7.384943e-56 |
MsG0480023970.01 | MsG0880045072.01 | 0.863472 | 2.429092e-64 | 7.371468e-61 |
MsG0480023970.01 | MsG0880046444.01 | 0.857312 | 1.777994e-62 | 4.369733e-59 |
MsG0480023970.01 | MsG0880047082.01 | 0.907441 | 5.049698e-81 | 8.959737e-77 |
MsG0380015494.01 | MsG0480023970.01 | 0.869749 | 2.451121e-66 | 9.298927e-63 |
MsG0380016577.01 | MsG0480023970.01 | 0.890669 | 7.993137e-74 | 6.787378e-70 |
MsG0380016607.01 | MsG0480023970.01 | 0.803225 | 3.858754e-49 | 1.928485e-46 |
MsG0380016622.01 | MsG0480023970.01 | 0.922517 | 8.872676e-89 | 3.371277e-84 |
MsG0380016678.01 | MsG0480023970.01 | 0.824405 | 8.215989e-54 | 7.269900e-51 |
MsG0380016733.01 | MsG0480023970.01 | 0.901465 | 2.606862e-78 | 3.526448e-74 |
MsG0480018084.01 | MsG0480023970.01 | 0.897119 | 1.915141e-76 | 2.133460e-72 |
MsG0280006629.01 | MsG0480023970.01 | 0.818015 | 2.443814e-52 | 1.808042e-49 |
MsG0280006664.01 | MsG0480023970.01 | 0.811181 | 7.960485e-51 | 4.894306e-48 |
MsG0280006747.01 | MsG0480023970.01 | 0.837415 | 5.267477e-57 | 6.837212e-54 |
MsG0280006819.01 | MsG0480023970.01 | 0.801715 | 7.900648e-49 | 3.799434e-46 |
MsG0280007055.01 | MsG0480023970.01 | 0.802878 | 4.551382e-49 | 2.254618e-46 |
MsG0280007643.01 | MsG0480023970.01 | 0.841208 | 5.463356e-58 | 7.969418e-55 |
MsG0280007995.01 | MsG0480023970.01 | 0.870081 | 1.910578e-66 | 7.337136e-63 |
MsG0280010495.01 | MsG0480023970.01 | 0.862408 | 5.176140e-64 | 1.514351e-60 |
PPI
Gene1 | Gene2 | Type |
---|---|---|
MsG0480023970.01 | MsG0480018084.01 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480023970.01.T01 | MTR_8g106080 | 100.000 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 1.22e-100 | 285 |
MsG0480023970.01.T01 | MTR_8g106020 | 100.000 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 1.22e-100 | 285 |
MsG0480023970.01.T01 | MTR_5g075240 | 99.286 | 140 | 1 | 0 | 1 | 140 | 1 | 140 | 2.74e-100 | 283 |
MsG0480023970.01.T01 | MTR_4g085580 | 95.000 | 140 | 7 | 0 | 1 | 140 | 4 | 143 | 3.03e-96 | 273 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480023970.01.T01 | AT2G09990 | 89.928 | 139 | 14 | 0 | 2 | 140 | 8 | 146 | 5.38e-92 | 263 |
MsG0480023970.01.T01 | AT5G18380 | 89.209 | 139 | 15 | 0 | 2 | 140 | 8 | 146 | 9.20e-92 | 262 |
MsG0480023970.01.T01 | AT3G04230 | 84.173 | 139 | 22 | 0 | 2 | 140 | 8 | 146 | 1.91e-85 | 246 |
MsG0480023970.01.T01 | AT5G18380 | 87.200 | 125 | 16 | 0 | 2 | 126 | 8 | 132 | 3.83e-79 | 230 |
MsG0480023970.01.T01 | AT5G18380 | 87.037 | 108 | 14 | 0 | 2 | 109 | 8 | 115 | 1.18e-67 | 201 |
Find 38 sgRNAs with CRISPR-Local
Find 36 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAATCTAACGATAAGATTTC+TGG | 0.210396 | 4:+91797773 | None:intergenic |
ACAGAGTAAGAAGGAGATTA+AGG | 0.258952 | 4:-91797890 | MsG0480023970.01.T01:CDS |
CGCTGTGAGCCTAAGAAGTT+TGG | 0.359075 | 4:-91797820 | MsG0480023970.01.T01:CDS |
CTGCAACAGCGTTCTTCTTC+CGG | 0.375769 | 4:+91798154 | None:intergenic |
TCAGAGTATTGCGAAGGCTT+TGG | 0.400647 | 4:-91797941 | MsG0480023970.01.T01:CDS |
TACGAACCAATCCTCCTTCT+CGG | 0.413918 | 4:-91798042 | MsG0480023970.01.T01:CDS |
CCACGACCACCAAACTTCTT+AGG | 0.436009 | 4:+91797811 | None:intergenic |
ATGGAACAGGTGCAATGCTT+TGG | 0.453443 | 4:-91798177 | MsG0480023970.01.T01:CDS |
GAAGCTCAGCAAGATGGAAC+AGG | 0.488449 | 4:-91798190 | None:intergenic |
CAATGGCTGTCCAATCGAAC+TGG | 0.489439 | 4:-91798094 | MsG0480023970.01.T01:CDS |
CGCGGTCTCATCAAGATCAA+TGG | 0.494184 | 4:-91798111 | MsG0480023970.01.T01:CDS |
TCATATCAACTCCGGCGAAA+CGG | 0.494924 | 4:+91798013 | None:intergenic |
CTCGGCAGACACCGTTTCGC+CGG | 0.496313 | 4:-91798024 | MsG0480023970.01.T01:CDS |
TCAGGCTCCACCAGTTCGAT+TGG | 0.496656 | 4:+91798084 | None:intergenic |
GTGGTCGTGGTGCTCGTGCT+AGG | 0.502073 | 4:-91797798 | MsG0480023970.01.T01:CDS |
GCTTTGAAACGAAGAATCTC+AGG | 0.503475 | 4:+91798066 | None:intergenic |
GTTTCGCCGGAGTTGATATG+AGG | 0.511168 | 4:-91798011 | MsG0480023970.01.T01:CDS |
CCTAAGAAGTTTGGTGGTCG+TGG | 0.511400 | 4:-91797811 | MsG0480023970.01.T01:CDS |
AGGATCCGTGTGAAGGGTGG+AGG | 0.521481 | 4:-91797991 | MsG0480023970.01.T01:CDS |
TGTTGATGAACAGAGTAAGA+AGG | 0.534508 | 4:-91797899 | MsG0480023970.01.T01:CDS |
CGAAACGGTGTCTGCCGAGA+AGG | 0.541529 | 4:+91798028 | None:intergenic |
AACAGGTGCAATGCTTTGGC+CGG | 0.546867 | 4:-91798173 | MsG0480023970.01.T01:CDS |
TGTGAGCCTAAGAAGTTTGG+TGG | 0.558448 | 4:-91797817 | MsG0480023970.01.T01:CDS |
ACCCACTGCAAGAGAGGTCG+CGG | 0.562945 | 4:-91798129 | MsG0480023970.01.T01:CDS |
AACGGTGTCTGCCGAGAAGG+AGG | 0.579454 | 4:+91798031 | None:intergenic |
GCAGTTACCCACTGCAAGAG+AGG | 0.580125 | 4:-91798135 | MsG0480023970.01.T01:CDS |
TGGCTGTCCAATCGAACTGG+TGG | 0.587642 | 4:-91798091 | MsG0480023970.01.T01:CDS |
TTCTTAGGCTCACAGCGTCT+AGG | 0.590494 | 4:+91797826 | None:intergenic |
TGTCTGCCGAGAAGGAGGAT+TGG | 0.604124 | 4:+91798036 | None:intergenic |
CTTCGCAATACTCTGACGAA+TGG | 0.610127 | 4:+91797948 | None:intergenic |
ACCGCGACCTCTCTTGCAGT+GGG | 0.618077 | 4:+91798128 | None:intergenic |
CATTCGTCAGAGTATTGCGA+AGG | 0.620290 | 4:-91797947 | MsG0480023970.01.T01:CDS |
GACCGCGACCTCTCTTGCAG+TGG | 0.624398 | 4:+91798127 | None:intergenic |
TGATATGAGGATCCGTGTGA+AGG | 0.626071 | 4:-91797998 | MsG0480023970.01.T01:CDS |
ATGAGGATCCGTGTGAAGGG+TGG | 0.634725 | 4:-91797994 | MsG0480023970.01.T01:CDS |
TGTGACCTCCACCCTTCACA+CGG | 0.645312 | 4:+91797986 | None:intergenic |
ACGGATCCTCATATCAACTC+CGG | 0.648153 | 4:+91798005 | None:intergenic |
GATATGAGGATCCGTGTGAA+GGG | 0.662094 | 4:-91797997 | MsG0480023970.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
ACAGAGTAAGAAGGAGATTA+AGG | - | Chr4:91798064-91798083 | MsG0480023970.01.T01:CDS | 35.0% | |
! | TGTTGATGAACAGAGTAAGA+AGG | - | Chr4:91798055-91798074 | MsG0480023970.01.T01:CDS | 35.0% |
!! | GCTTTGAAACGAAGAATCTC+AGG | + | Chr4:91797891-91797910 | None:intergenic | 40.0% |
ACGGATCCTCATATCAACTC+CGG | + | Chr4:91797952-91797971 | None:intergenic | 45.0% | |
ATGGAACAGGTGCAATGCTT+TGG | - | Chr4:91797777-91797796 | MsG0480023970.01.T01:CDS | 45.0% | |
CTTCGCAATACTCTGACGAA+TGG | + | Chr4:91798009-91798028 | None:intergenic | 45.0% | |
GATATGAGGATCCGTGTGAA+GGG | - | Chr4:91797957-91797976 | MsG0480023970.01.T01:CDS | 45.0% | |
TACGAACCAATCCTCCTTCT+CGG | - | Chr4:91797912-91797931 | MsG0480023970.01.T01:CDS | 45.0% | |
TCATATCAACTCCGGCGAAA+CGG | + | Chr4:91797944-91797963 | None:intergenic | 45.0% | |
TGATATGAGGATCCGTGTGA+AGG | - | Chr4:91797956-91797975 | MsG0480023970.01.T01:CDS | 45.0% | |
TGTGAGCCTAAGAAGTTTGG+TGG | - | Chr4:91798137-91798156 | MsG0480023970.01.T01:CDS | 45.0% | |
!! | CATTCGTCAGAGTATTGCGA+AGG | - | Chr4:91798007-91798026 | MsG0480023970.01.T01:CDS | 45.0% |
!! | TCAGAGTATTGCGAAGGCTT+TGG | - | Chr4:91798013-91798032 | MsG0480023970.01.T01:CDS | 45.0% |
AACAGGTGCAATGCTTTGGC+CGG | - | Chr4:91797781-91797800 | MsG0480023970.01.T01:CDS | 50.0% | |
CAATGGCTGTCCAATCGAAC+TGG | - | Chr4:91797860-91797879 | MsG0480023970.01.T01:CDS | 50.0% | |
CCACGACCACCAAACTTCTT+AGG | + | Chr4:91798146-91798165 | None:intergenic | 50.0% | |
CGCGGTCTCATCAAGATCAA+TGG | - | Chr4:91797843-91797862 | MsG0480023970.01.T01:CDS | 50.0% | |
CGCTGTGAGCCTAAGAAGTT+TGG | - | Chr4:91798134-91798153 | MsG0480023970.01.T01:CDS | 50.0% | |
CTGCAACAGCGTTCTTCTTC+CGG | + | Chr4:91797803-91797822 | None:intergenic | 50.0% | |
TTCTTAGGCTCACAGCGTCT+AGG | + | Chr4:91798131-91798150 | None:intergenic | 50.0% | |
! | CCTAAGAAGTTTGGTGGTCG+TGG | - | Chr4:91798143-91798162 | MsG0480023970.01.T01:CDS | 50.0% |
!! | GTTTCGCCGGAGTTGATATG+AGG | - | Chr4:91797943-91797962 | MsG0480023970.01.T01:CDS | 50.0% |
ATGAGGATCCGTGTGAAGGG+TGG | - | Chr4:91797960-91797979 | MsG0480023970.01.T01:CDS | 55.0% | |
GCAGTTACCCACTGCAAGAG+AGG | - | Chr4:91797819-91797838 | MsG0480023970.01.T01:CDS | 55.0% | |
TCAGGCTCCACCAGTTCGAT+TGG | + | Chr4:91797873-91797892 | None:intergenic | 55.0% | |
TGGCTGTCCAATCGAACTGG+TGG | - | Chr4:91797863-91797882 | MsG0480023970.01.T01:CDS | 55.0% | |
TGTCTGCCGAGAAGGAGGAT+TGG | + | Chr4:91797921-91797940 | None:intergenic | 55.0% | |
TGTGACCTCCACCCTTCACA+CGG | + | Chr4:91797971-91797990 | None:intergenic | 55.0% | |
AACGGTGTCTGCCGAGAAGG+AGG | + | Chr4:91797926-91797945 | None:intergenic | 60.0% | |
ACCCACTGCAAGAGAGGTCG+CGG | - | Chr4:91797825-91797844 | MsG0480023970.01.T01:CDS | 60.0% | |
ACCGCGACCTCTCTTGCAGT+GGG | + | Chr4:91797829-91797848 | None:intergenic | 60.0% | |
AGGATCCGTGTGAAGGGTGG+AGG | - | Chr4:91797963-91797982 | MsG0480023970.01.T01:CDS | 60.0% | |
CGAAACGGTGTCTGCCGAGA+AGG | + | Chr4:91797929-91797948 | None:intergenic | 60.0% | |
CTCGGCAGACACCGTTTCGC+CGG | - | Chr4:91797930-91797949 | MsG0480023970.01.T01:CDS | 65.0% | |
GACCGCGACCTCTCTTGCAG+TGG | + | Chr4:91797830-91797849 | None:intergenic | 65.0% | |
GTGGTCGTGGTGCTCGTGCT+AGG | - | Chr4:91798156-91798175 | MsG0480023970.01.T01:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr4 | gene | 91797777 | 91798199 | 91797777 | ID=MsG0480023970.01;Name=MsG0480023970.01 |
Chr4 | mRNA | 91797777 | 91798199 | 91797777 | ID=MsG0480023970.01.T01;Parent=MsG0480023970.01;Name=MsG0480023970.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|140 |
Chr4 | exon | 91797777 | 91798199 | 91797777 | ID=MsG0480023970.01.T01:exon:12817;Parent=MsG0480023970.01.T01 |
Chr4 | CDS | 91797777 | 91798199 | 91797777 | ID=MsG0480023970.01.T01:cds;Parent=MsG0480023970.01.T01 |
Gene Sequence |
Protein sequence |