Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005271.01.T02 | XP_003591988.1 | 99.16 | 238 | 2 | 0 | 1 | 238 | 86 | 323 | 4.63E-169 | 488 |
| MsG0180005271.01.T01 | XP_003591988.1 | 99.16 | 238 | 2 | 0 | 1 | 238 | 86 | 323 | 4.63E-169 | 488 |
| MsG0180005271.01.T03 | XP_003591988.1 | 82.812 | 192 | 20 | 2 | 1 | 179 | 362 | 553 | 1.07E-103 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005271.01.T01 | Q67XD9 | 84.454 | 238 | 36 | 1 | 1 | 238 | 92 | 328 | 2.56E-148 | 428 |
| MsG0180005271.01.T02 | Q67XD9 | 84.454 | 238 | 36 | 1 | 1 | 238 | 92 | 328 | 2.56E-148 | 428 |
| MsG0180005271.01.T03 | Q69T31 | 73.822 | 191 | 37 | 2 | 1 | 178 | 371 | 561 | 3.79E-92 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005271.01.T01 | G7I9P2 | 99.160 | 238 | 2 | 0 | 1 | 238 | 86 | 323 | 2.21e-169 | 488 |
| MsG0180005271.01.T02 | G7I9P2 | 99.160 | 238 | 2 | 0 | 1 | 238 | 86 | 323 | 2.21e-169 | 488 |
| MsG0180005271.01.T03 | G7I9P2 | 82.812 | 192 | 20 | 2 | 1 | 179 | 362 | 553 | 5.13e-104 | 318 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004295.01 | MsG0180005271.01 | 0.800819 | 1.204945e-48 | 5.664953e-46 |
| MsG0180005271.01 | MsG0180005445.01 | 0.833386 | 5.493496e-56 | 6.316904e-53 |
| MsG0180005271.01 | MsG0180005765.01 | 0.803903 | 2.791037e-49 | 1.419505e-46 |
| MsG0180005271.01 | MsG0180005842.01 | 0.801085 | 1.063163e-48 | 5.032621e-46 |
| MsG0180005271.01 | MsG0380012020.01 | 0.811940 | 5.443868e-51 | 3.414847e-48 |
| MsG0180005271.01 | MsG0380012057.01 | 0.803912 | 2.779197e-49 | 1.413826e-46 |
| MsG0180005271.01 | MsG0480020331.01 | 0.802713 | 4.922883e-49 | 2.428475e-46 |
| MsG0180005271.01 | MsG0480022467.01 | 0.806426 | 8.272570e-50 | 4.488777e-47 |
| MsG0180005271.01 | MsG0480023600.01 | 0.809747 | 1.624196e-50 | 9.615253e-48 |
| MsG0180005271.01 | MsG0580024418.01 | 0.808035 | 3.774922e-50 | 2.135574e-47 |
| MsG0180005271.01 | MsG0580024819.01 | 0.800797 | 1.217566e-48 | 5.721168e-46 |
| MsG0180005271.01 | MsG0580024960.01 | 0.802360 | 5.821172e-49 | 2.845989e-46 |
| MsG0180005271.01 | MsG0780037287.01 | 0.800600 | 1.335496e-48 | 6.244151e-46 |
| MsG0180005271.01 | MsG0880047437.01 | 0.807137 | 5.854069e-50 | 3.235130e-47 |
| MsG0180005271.01 | MsG0880047472.01 | 0.800977 | 1.118593e-48 | 5.280601e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005271.01.T02 | MTR_1g095970 | 99.160 | 238 | 2 | 0 | 1 | 238 | 86 | 323 | 5.61e-173 | 488 |
| MsG0180005271.01.T02 | MTR_1g096140 | 93.697 | 238 | 15 | 0 | 1 | 238 | 88 | 325 | 9.92e-162 | 459 |
| MsG0180005271.01.T02 | MTR_3g117710 | 78.571 | 238 | 49 | 2 | 1 | 238 | 108 | 343 | 2.70e-136 | 395 |
| MsG0180005271.01.T02 | MTR_4g075540 | 68.908 | 238 | 72 | 2 | 1 | 238 | 48 | 283 | 5.60e-117 | 342 |
| MsG0180005271.01.T02 | MTR_4g123030 | 61.088 | 239 | 85 | 4 | 4 | 236 | 184 | 420 | 7.62e-95 | 288 |
| MsG0180005271.01.T02 | MTR_4g123030 | 61.506 | 239 | 84 | 4 | 4 | 236 | 184 | 420 | 3.67e-93 | 287 |
| MsG0180005271.01.T02 | MTR_8g092170 | 57.143 | 238 | 96 | 2 | 4 | 236 | 165 | 401 | 8.75e-92 | 283 |
| MsG0180005271.01.T02 | MTR_7g111890 | 60.504 | 238 | 89 | 3 | 4 | 238 | 129 | 364 | 2.25e-91 | 281 |
| MsG0180005271.01.T02 | MTR_1g084610 | 60.169 | 236 | 88 | 3 | 5 | 236 | 114 | 347 | 9.07e-91 | 279 |
| MsG0180005271.01.T02 | MTR_3g025460 | 62.857 | 70 | 26 | 0 | 42 | 111 | 91 | 160 | 6.87e-20 | 84.0 |
| MsG0180005271.01.T01 | MTR_1g095970 | 99.160 | 238 | 2 | 0 | 1 | 238 | 86 | 323 | 5.61e-173 | 488 |
| MsG0180005271.01.T01 | MTR_1g096140 | 93.697 | 238 | 15 | 0 | 1 | 238 | 88 | 325 | 9.92e-162 | 459 |
| MsG0180005271.01.T01 | MTR_3g117710 | 78.571 | 238 | 49 | 2 | 1 | 238 | 108 | 343 | 2.70e-136 | 395 |
| MsG0180005271.01.T01 | MTR_4g075540 | 68.908 | 238 | 72 | 2 | 1 | 238 | 48 | 283 | 5.60e-117 | 342 |
| MsG0180005271.01.T01 | MTR_4g123030 | 61.088 | 239 | 85 | 4 | 4 | 236 | 184 | 420 | 7.62e-95 | 288 |
| MsG0180005271.01.T01 | MTR_4g123030 | 61.506 | 239 | 84 | 4 | 4 | 236 | 184 | 420 | 3.67e-93 | 287 |
| MsG0180005271.01.T01 | MTR_8g092170 | 57.143 | 238 | 96 | 2 | 4 | 236 | 165 | 401 | 8.75e-92 | 283 |
| MsG0180005271.01.T01 | MTR_7g111890 | 60.504 | 238 | 89 | 3 | 4 | 238 | 129 | 364 | 2.25e-91 | 281 |
| MsG0180005271.01.T01 | MTR_1g084610 | 60.169 | 236 | 88 | 3 | 5 | 236 | 114 | 347 | 9.07e-91 | 279 |
| MsG0180005271.01.T01 | MTR_3g025460 | 62.857 | 70 | 26 | 0 | 42 | 111 | 91 | 160 | 6.87e-20 | 84.0 |
| MsG0180005271.01.T03 | MTR_1g095970 | 82.812 | 192 | 20 | 2 | 1 | 179 | 362 | 553 | 1.30e-107 | 318 |
| MsG0180005271.01.T03 | MTR_1g096140 | 79.167 | 192 | 27 | 2 | 1 | 179 | 364 | 555 | 5.22e-101 | 301 |
| MsG0180005271.01.T03 | MTR_3g117710 | 64.583 | 192 | 54 | 3 | 1 | 178 | 382 | 573 | 9.57e-84 | 258 |
| MsG0180005271.01.T03 | MTR_8g092170 | 50.000 | 180 | 77 | 2 | 1 | 167 | 442 | 621 | 6.00e-55 | 184 |
| MsG0180005271.01.T03 | MTR_1g084610 | 48.333 | 180 | 80 | 2 | 1 | 167 | 388 | 567 | 3.92e-53 | 178 |
| MsG0180005271.01.T03 | MTR_7g111890 | 45.556 | 180 | 85 | 2 | 1 | 167 | 403 | 582 | 1.88e-49 | 168 |
| MsG0180005271.01.T03 | MTR_4g123030 | 45.455 | 176 | 83 | 2 | 5 | 167 | 465 | 640 | 9.92e-49 | 167 |
| MsG0180005271.01.T03 | MTR_4g075540 | 60.769 | 130 | 38 | 2 | 1 | 117 | 322 | 451 | 9.47e-46 | 156 |
| MsG0180005271.01.T03 | MTR_3g015100 | 62.069 | 58 | 22 | 0 | 5 | 62 | 75 | 132 | 2.70e-21 | 85.5 |
| MsG0180005271.01.T03 | MTR_4g123030 | 62.069 | 58 | 22 | 0 | 5 | 62 | 465 | 522 | 3.20e-20 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005271.01.T02 | AT4G09510 | 84.454 | 238 | 36 | 1 | 1 | 238 | 92 | 328 | 2.04e-150 | 427 |
| MsG0180005271.01.T02 | AT4G09510 | 84.454 | 238 | 36 | 1 | 1 | 238 | 92 | 328 | 2.61e-149 | 428 |
| MsG0180005271.01.T02 | AT1G35580 | 82.645 | 242 | 41 | 1 | 1 | 242 | 84 | 324 | 6.44e-148 | 421 |
| MsG0180005271.01.T02 | AT1G35580 | 82.645 | 242 | 41 | 1 | 1 | 242 | 84 | 324 | 6.10e-147 | 421 |
| MsG0180005271.01.T02 | AT1G35580 | 82.645 | 242 | 41 | 1 | 1 | 242 | 84 | 324 | 6.10e-147 | 421 |
| MsG0180005271.01.T02 | AT1G22650 | 80.672 | 238 | 45 | 1 | 1 | 238 | 69 | 305 | 1.87e-144 | 412 |
| MsG0180005271.01.T02 | AT1G22650 | 80.672 | 238 | 45 | 1 | 1 | 238 | 69 | 305 | 8.43e-144 | 413 |
| MsG0180005271.01.T02 | AT1G72000 | 79.832 | 238 | 47 | 1 | 1 | 238 | 34 | 270 | 1.23e-140 | 404 |
| MsG0180005271.01.T02 | AT4G34860 | 80.672 | 238 | 44 | 2 | 1 | 238 | 106 | 341 | 6.01e-140 | 404 |
| MsG0180005271.01.T02 | AT4G34860 | 80.672 | 238 | 44 | 2 | 1 | 238 | 106 | 341 | 6.01e-140 | 404 |
| MsG0180005271.01.T02 | AT4G34860 | 80.672 | 238 | 44 | 2 | 1 | 238 | 106 | 341 | 6.01e-140 | 404 |
| MsG0180005271.01.T02 | AT1G56560 | 60.169 | 236 | 90 | 2 | 4 | 236 | 134 | 368 | 5.48e-94 | 288 |
| MsG0180005271.01.T02 | AT3G05820 | 57.627 | 236 | 96 | 2 | 4 | 236 | 150 | 384 | 1.60e-90 | 276 |
| MsG0180005271.01.T02 | AT5G22510 | 56.432 | 241 | 97 | 3 | 4 | 238 | 134 | 372 | 2.01e-90 | 279 |
| MsG0180005271.01.T02 | AT5G22510 | 56.432 | 241 | 97 | 3 | 4 | 238 | 134 | 372 | 2.01e-90 | 279 |
| MsG0180005271.01.T02 | AT3G06500 | 59.664 | 238 | 90 | 2 | 4 | 236 | 182 | 418 | 6.70e-90 | 279 |
| MsG0180005271.01.T02 | AT3G05820 | 57.627 | 236 | 96 | 2 | 4 | 236 | 150 | 384 | 5.93e-89 | 275 |
| MsG0180005271.01.T02 | AT3G06500 | 58.382 | 173 | 66 | 2 | 69 | 236 | 48 | 219 | 8.45e-60 | 196 |
| MsG0180005271.01.T01 | AT4G09510 | 84.454 | 238 | 36 | 1 | 1 | 238 | 92 | 328 | 2.04e-150 | 427 |
| MsG0180005271.01.T01 | AT4G09510 | 84.454 | 238 | 36 | 1 | 1 | 238 | 92 | 328 | 2.61e-149 | 428 |
| MsG0180005271.01.T01 | AT1G35580 | 82.645 | 242 | 41 | 1 | 1 | 242 | 84 | 324 | 6.44e-148 | 421 |
| MsG0180005271.01.T01 | AT1G35580 | 82.645 | 242 | 41 | 1 | 1 | 242 | 84 | 324 | 6.10e-147 | 421 |
| MsG0180005271.01.T01 | AT1G35580 | 82.645 | 242 | 41 | 1 | 1 | 242 | 84 | 324 | 6.10e-147 | 421 |
| MsG0180005271.01.T01 | AT1G22650 | 80.672 | 238 | 45 | 1 | 1 | 238 | 69 | 305 | 1.87e-144 | 412 |
| MsG0180005271.01.T01 | AT1G22650 | 80.672 | 238 | 45 | 1 | 1 | 238 | 69 | 305 | 8.43e-144 | 413 |
| MsG0180005271.01.T01 | AT1G72000 | 79.832 | 238 | 47 | 1 | 1 | 238 | 34 | 270 | 1.23e-140 | 404 |
| MsG0180005271.01.T01 | AT4G34860 | 80.672 | 238 | 44 | 2 | 1 | 238 | 106 | 341 | 6.01e-140 | 404 |
| MsG0180005271.01.T01 | AT4G34860 | 80.672 | 238 | 44 | 2 | 1 | 238 | 106 | 341 | 6.01e-140 | 404 |
| MsG0180005271.01.T01 | AT4G34860 | 80.672 | 238 | 44 | 2 | 1 | 238 | 106 | 341 | 6.01e-140 | 404 |
| MsG0180005271.01.T01 | AT1G56560 | 60.169 | 236 | 90 | 2 | 4 | 236 | 134 | 368 | 5.48e-94 | 288 |
| MsG0180005271.01.T01 | AT3G05820 | 57.627 | 236 | 96 | 2 | 4 | 236 | 150 | 384 | 1.60e-90 | 276 |
| MsG0180005271.01.T01 | AT5G22510 | 56.432 | 241 | 97 | 3 | 4 | 238 | 134 | 372 | 2.01e-90 | 279 |
| MsG0180005271.01.T01 | AT5G22510 | 56.432 | 241 | 97 | 3 | 4 | 238 | 134 | 372 | 2.01e-90 | 279 |
| MsG0180005271.01.T01 | AT3G06500 | 59.664 | 238 | 90 | 2 | 4 | 236 | 182 | 418 | 6.70e-90 | 279 |
| MsG0180005271.01.T01 | AT3G05820 | 57.627 | 236 | 96 | 2 | 4 | 236 | 150 | 384 | 5.93e-89 | 275 |
| MsG0180005271.01.T01 | AT3G06500 | 58.382 | 173 | 66 | 2 | 69 | 236 | 48 | 219 | 8.45e-60 | 196 |
| MsG0180005271.01.T03 | AT1G22650 | 72.251 | 191 | 40 | 2 | 1 | 178 | 344 | 534 | 7.27e-93 | 280 |
| MsG0180005271.01.T03 | AT4G34860 | 71.354 | 192 | 42 | 2 | 1 | 179 | 380 | 571 | 1.37e-92 | 280 |
| MsG0180005271.01.T03 | AT4G34860 | 71.354 | 192 | 42 | 2 | 1 | 179 | 380 | 571 | 1.37e-92 | 280 |
| MsG0180005271.01.T03 | AT4G34860 | 71.354 | 192 | 42 | 2 | 1 | 179 | 380 | 571 | 1.37e-92 | 280 |
| MsG0180005271.01.T03 | AT4G09510 | 71.875 | 192 | 41 | 2 | 1 | 179 | 367 | 558 | 6.68e-92 | 278 |
| MsG0180005271.01.T03 | AT1G72000 | 70.157 | 191 | 44 | 2 | 1 | 178 | 309 | 499 | 1.30e-89 | 271 |
| MsG0180005271.01.T03 | AT1G35580 | 69.474 | 190 | 45 | 2 | 1 | 177 | 359 | 548 | 1.68e-85 | 261 |
| MsG0180005271.01.T03 | AT1G35580 | 69.474 | 190 | 45 | 2 | 1 | 177 | 359 | 548 | 1.68e-85 | 261 |
| MsG0180005271.01.T03 | AT5G22510 | 49.724 | 181 | 78 | 2 | 1 | 168 | 411 | 591 | 1.58e-53 | 179 |
| MsG0180005271.01.T03 | AT5G22510 | 49.724 | 181 | 78 | 2 | 1 | 168 | 411 | 591 | 1.58e-53 | 179 |
| MsG0180005271.01.T03 | AT1G56560 | 45.000 | 180 | 86 | 2 | 1 | 167 | 409 | 588 | 2.54e-52 | 176 |
| MsG0180005271.01.T03 | AT3G06500 | 46.667 | 180 | 83 | 2 | 1 | 167 | 260 | 439 | 3.57e-51 | 171 |
| MsG0180005271.01.T03 | AT3G06500 | 46.667 | 180 | 83 | 2 | 1 | 167 | 459 | 638 | 5.01e-50 | 171 |
| MsG0180005271.01.T03 | AT3G05820 | 46.023 | 176 | 82 | 2 | 5 | 167 | 431 | 606 | 3.43e-49 | 168 |
| MsG0180005271.01.T03 | AT1G22650 | 75.000 | 76 | 19 | 0 | 1 | 76 | 344 | 419 | 4.31e-32 | 120 |
| MsG0180005271.01.T03 | AT4G09510 | 72.368 | 76 | 21 | 0 | 1 | 76 | 367 | 442 | 7.66e-31 | 116 |
| MsG0180005271.01.T03 | AT1G35580 | 71.053 | 76 | 22 | 0 | 1 | 76 | 359 | 434 | 4.42e-29 | 112 |
| MsG0180005271.01.T03 | AT3G05820 | 60.345 | 58 | 23 | 0 | 5 | 62 | 431 | 488 | 5.79e-19 | 84.0 |
Find 50 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGACTTGCTAAATTATTC+TGG | 0.241026 | 1:-89423392 | MsG0180005271.01.T01:three_prime_UTR |
| TGCATAAAAGATCATCTTCT+TGG | 0.270695 | 1:-89423411 | MsG0180005271.01.T01:three_prime_UTR |
| AGAGCAGTCAACAGCAATTA+TGG | 0.285313 | 1:-89424206 | MsG0180005271.01.T01:three_prime_UTR |
| ATAAAGTAGCCACCGCATTT+TGG | 0.285387 | 1:+89424313 | None:intergenic |
| TCATCTGCTTGTCTTCTTCA+AGG | 0.335576 | 1:+89423440 | None:intergenic |
| AAAGCCCTAGAAAGAGTAAA+AGG | 0.342428 | 1:+89423120 | None:intergenic |
| TGCTTACCATCATAATATTC+AGG | 0.347947 | 1:+89423571 | None:intergenic |
| ATGGTCTATTGCAGGTTATC+TGG | 0.349611 | 1:-89423509 | MsG0180005271.01.T01:three_prime_UTR |
| AAATTAAAACCAGTGATATT+CGG | 0.368427 | 1:-89423944 | MsG0180005271.01.T01:intron |
| CAGTCTTTACCTTCGTATGC+AGG | 0.388637 | 1:+89424125 | None:intergenic |
| TGCTAAATTATTCTGGTGAT+AGG | 0.390370 | 1:-89423385 | MsG0180005271.01.T01:three_prime_UTR |
| AAATGCGGTGGCTACTTTAT+CGG | 0.392608 | 1:-89424310 | MsG0180005271.01.T01:three_prime_UTR |
| TACCAAACATGGTCTATTGC+AGG | 0.409620 | 1:-89423517 | MsG0180005271.01.T01:three_prime_UTR |
| AACCTGCAATAGACCATGTT+TGG | 0.427286 | 1:+89423515 | None:intergenic |
| GGATCTTATTGAAGCTCGTT+GGG | 0.430043 | 1:-89424185 | MsG0180005271.01.T01:three_prime_UTR |
| ATAATTGCTGTTGACTGCTC+TGG | 0.432673 | 1:+89424208 | None:intergenic |
| TAATTAATAAGCGATACTAA+TGG | 0.437288 | 1:-89423288 | MsG0180005271.01.T01:three_prime_UTR |
| CATCTGCTTGTCTTCTTCAA+GGG | 0.447224 | 1:+89423441 | None:intergenic |
| CTGGAGGACCCCTCACACTT+GGG | 0.450103 | 1:-89423472 | MsG0180005271.01.T01:three_prime_UTR |
| ATTGCACGTCTTGCTATTTG+CGG | 0.450912 | 1:+89423631 | None:intergenic |
| ACTTGCTGAGAATCGTTTGA+TGG | 0.454581 | 1:-89423605 | MsG0180005271.01.T01:three_prime_UTR |
| TGGATCTTATTGAAGCTCGT+TGG | 0.474322 | 1:-89424186 | MsG0180005271.01.T01:three_prime_UTR |
| TGAAGCTCGTTGGGATGAGT+TGG | 0.485276 | 1:-89424176 | MsG0180005271.01.T01:three_prime_UTR |
| ACAGCTGCTTGCATCAAGAC+AGG | 0.497167 | 1:-89423658 | MsG0180005271.01.T01:three_prime_UTR |
| GCTGGAGGACCCCTCACACT+TGG | 0.498361 | 1:-89423473 | MsG0180005271.01.T01:three_prime_UTR |
| GGGGTCCTCCAGCATCATCT+TGG | 0.500133 | 1:+89423483 | None:intergenic |
| TCTGGTTTCCAAGATGATGC+TGG | 0.518393 | 1:-89423491 | MsG0180005271.01.T01:three_prime_UTR |
| AAATGTCAGTCCAGCTCGAA+TGG | 0.525322 | 1:-89424287 | MsG0180005271.01.T01:three_prime_UTR |
| CAATCCGAACCGAATATCAC+TGG | 0.531472 | 1:+89423935 | None:intergenic |
| TTTCACTTGCTTTATATACA+AGG | 0.534505 | 1:-89423216 | MsG0180005271.01.T01:three_prime_UTR |
| GGTAAGCATGGAAGATATGT+TGG | 0.541680 | 1:-89423556 | MsG0180005271.01.T01:three_prime_UTR |
| CATCGAAAATCCATTCGAGC+TGG | 0.551481 | 1:+89424277 | None:intergenic |
| ATCGTTTGATGGAGGATGGA+TGG | 0.552104 | 1:-89423594 | MsG0180005271.01.T01:three_prime_UTR |
| GAATATTATGATGGTAAGCA+TGG | 0.559652 | 1:-89423568 | MsG0180005271.01.T01:three_prime_UTR |
| AGTCTTTACCTTCGTATGCA+GGG | 0.571525 | 1:+89424126 | None:intergenic |
| GAAATCATCCCCAAGTGTGA+GGG | 0.573270 | 1:+89423463 | None:intergenic |
| GAGAATCGTTTGATGGAGGA+TGG | 0.574764 | 1:-89423598 | MsG0180005271.01.T01:three_prime_UTR |
| TCTTGAGTGCAGTGCTCATG+TGG | 0.579381 | 1:-89423687 | MsG0180005271.01.T01:intron |
| GGATGGCCTGAATATTATGA+TGG | 0.602993 | 1:-89423577 | MsG0180005271.01.T01:three_prime_UTR |
| TGGAGGACCCCTCACACTTG+GGG | 0.604221 | 1:-89423471 | MsG0180005271.01.T01:three_prime_UTR |
| GGAAATCATCCCCAAGTGTG+AGG | 0.608698 | 1:+89423462 | None:intergenic |
| CAGCTGCTTGCATCAAGACA+GGG | 0.626845 | 1:-89423657 | MsG0180005271.01.T01:three_prime_UTR |
| GCTCGTTGGGATGAGTTGGT+CGG | 0.628466 | 1:-89424172 | MsG0180005271.01.T01:three_prime_UTR |
| AAGCAAGAAAATACCAAACA+TGG | 0.632972 | 1:-89423528 | MsG0180005271.01.T01:three_prime_UTR |
| GACTTTATGCCAAAATGCGG+TGG | 0.641608 | 1:-89424322 | MsG0180005271.01.T01:three_prime_UTR |
| AAATCATCCCCAAGTGTGAG+GGG | 0.644060 | 1:+89423464 | None:intergenic |
| AATAGTTACCCTGCATACGA+AGG | 0.650560 | 1:-89424134 | MsG0180005271.01.T01:three_prime_UTR |
| TGCTGAGAATCGTTTGATGG+AGG | 0.661742 | 1:-89423602 | MsG0180005271.01.T01:three_prime_UTR |
| GGTTTCCAAGATGATGCTGG+AGG | 0.698341 | 1:-89423488 | MsG0180005271.01.T01:three_prime_UTR |
| GTTGACTTTATGCCAAAATG+CGG | 0.698824 | 1:-89424325 | MsG0180005271.01.T01:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAGTTTAATGTTAATC+CGG | - | Chr1:89424332-89424351 | MsG0180005271.01.T01:three_prime_UTR | 15.0% |
| !! | ATCAACTAAATAACATTTAT+CGG | - | Chr1:89424278-89424297 | MsG0180005271.01.T01:three_prime_UTR | 15.0% |
| !!! | ATGATAAATTTTTGCTTTTT+AGG | - | Chr1:89423319-89423338 | MsG0180005271.01.T01:intron | 15.0% |
| !!! | TAACAACATTTTCAAATTTA+AGG | - | Chr1:89423871-89423890 | MsG0180005271.01.T01:intron | 15.0% |
| !! | AAACTCTTGAATATGTATTT+GGG | - | Chr1:89424025-89424044 | MsG0180005271.01.T01:intron | 20.0% |
| !! | AAATTAAAACCAGTGATATT+CGG | - | Chr1:89424755-89424774 | MsG0180005271.01.T01:intron | 20.0% |
| !! | AAGAAATTCTTAACTATTTC+CGG | + | Chr1:89423398-89423417 | None:intergenic | 20.0% |
| !! | TAAACTCTTGAATATGTATT+TGG | - | Chr1:89424024-89424043 | MsG0180005271.01.T01:intron | 20.0% |
| !! | TAATTAATAAGCGATACTAA+TGG | - | Chr1:89425411-89425430 | MsG0180005271.01.T01:intron | 20.0% |
| !! | TTAAAGAAGTTCATTTAACT+TGG | - | Chr1:89424703-89424722 | MsG0180005271.01.T01:intron | 20.0% |
| !!! | GATAAATGTTATTTAGTTGA+TGG | + | Chr1:89424279-89424298 | None:intergenic | 20.0% |
| !!! | TAAAGAAGTTCATTTAACTT+GGG | - | Chr1:89424704-89424723 | MsG0180005271.01.T01:intron | 20.0% |
| ! | GAAATAATTACTGCCAAAAA+AGG | + | Chr1:89425515-89425534 | None:intergenic | 25.0% |
| ! | TAGTTGACATCAAAATTCAT+TGG | + | Chr1:89424878-89424897 | None:intergenic | 25.0% |
| ! | TCTATATCATACTATATCGA+AGG | + | Chr1:89424927-89424946 | None:intergenic | 25.0% |
| ! | TGTGTGCATAGAAAAAATTT+CGG | + | Chr1:89424001-89424020 | None:intergenic | 25.0% |
| ! | TTTCACTTGCTTTATATACA+AGG | - | Chr1:89425483-89425502 | MsG0180005271.01.T01:intron | 25.0% |
| !! | ATTATCCTTTTACTCTTTCT+AGG | - | Chr1:89425574-89425593 | MsG0180005271.01.T01:CDS | 25.0% |
| !! | CATTTTATCAAGTACAACTA+GGG | - | Chr1:89425628-89425647 | MsG0180005271.01.T01:five_prime_UTR | 25.0% |
| !! | TCATTTTATCAAGTACAACT+AGG | - | Chr1:89425627-89425646 | MsG0180005271.01.T01:five_prime_UTR | 25.0% |
| !! | TTATCCTTTTACTCTTTCTA+GGG | - | Chr1:89425575-89425594 | MsG0180005271.01.T01:CDS | 25.0% |
| !! | TTGATAACAAAAATGTCACT+TGG | - | Chr1:89424614-89424633 | MsG0180005271.01.T01:intron | 25.0% |
| !!! | AAAAGTGCTTGAATTTCTAT+AGG | + | Chr1:89424125-89424144 | None:intergenic | 25.0% |
| !!! | AACAATTTTAGTACGGATTA+AGG | + | Chr1:89423235-89423254 | None:intergenic | 25.0% |
| !!! | AGAAGTTCTAAATTATGATC+AGG | - | Chr1:89423199-89423218 | MsG0180005271.01.T01:three_prime_UTR | 25.0% |
| !!! | TTTTTTTTCCTTTTCATGCA+GGG | - | Chr1:89424086-89424105 | MsG0180005271.01.T01:three_prime_UTR | 25.0% |
| AAAGACTGGGAAATTAATAC+CGG | - | Chr1:89424589-89424608 | MsG0180005271.01.T01:CDS | 30.0% | |
| AAGCAAGAAAATACCAAACA+TGG | - | Chr1:89425171-89425190 | MsG0180005271.01.T01:CDS | 30.0% | |
| AAGTCTCTAGTCTATTTCAA+TGG | - | Chr1:89423134-89423153 | MsG0180005271.01.T01:three_prime_UTR | 30.0% | |
| AATGAGAAGTAAGAGATGTA+AGG | + | Chr1:89424981-89425000 | None:intergenic | 30.0% | |
| AGAGTAGATCAATTTAAGCT+TGG | - | Chr1:89423452-89423471 | MsG0180005271.01.T01:three_prime_UTR | 30.0% | |
| ATAATACAAGACCTAAACTC+AGG | + | Chr1:89424818-89424837 | None:intergenic | 30.0% | |
| CTGCATGAAAAGGAAAAAAA+AGG | + | Chr1:89424087-89424106 | None:intergenic | 30.0% | |
| GAATATTATGATGGTAAGCA+TGG | - | Chr1:89425131-89425150 | MsG0180005271.01.T01:CDS | 30.0% | |
| GAATCTGATGATTGTCAAAA+AGG | - | Chr1:89423653-89423672 | MsG0180005271.01.T01:three_prime_UTR | 30.0% | |
| GTGTGCATAGAAAAAATTTC+GGG | + | Chr1:89424000-89424019 | None:intergenic | 30.0% | |
| GTTATACACAATAGATAGCA+AGG | + | Chr1:89423855-89423874 | None:intergenic | 30.0% | |
| TAAACTCAGGTCAAAATCAA+AGG | + | Chr1:89424805-89424824 | None:intergenic | 30.0% | |
| TCAAATGTCATACTCATTCT+TGG | + | Chr1:89423300-89423319 | None:intergenic | 30.0% | |
| TGAAATAGACTAGAGACTTT+CGG | + | Chr1:89423133-89423152 | None:intergenic | 30.0% | |
| TGCATAAAAGATCATCTTCT+TGG | - | Chr1:89425288-89425307 | MsG0180005271.01.T01:CDS | 30.0% | |
| TGCTAAATTATTCTGGTGAT+AGG | - | Chr1:89425314-89425333 | MsG0180005271.01.T01:CDS | 30.0% | |
| TGCTTACCATCATAATATTC+AGG | + | Chr1:89425131-89425150 | None:intergenic | 30.0% | |
| TTTGATGTCAACTATGTTAC+CGG | - | Chr1:89424884-89424903 | MsG0180005271.01.T01:intron | 30.0% | |
| ! | AATTCAAGCACTTTTCTTCA+TGG | - | Chr1:89424130-89424149 | MsG0180005271.01.T01:three_prime_UTR | 30.0% |
| ! | TTCTTCTGATTGATGATCAA+CGG | + | Chr1:89423183-89423202 | None:intergenic | 30.0% |
| !! | CATCGCAAACAATTTTAGTA+CGG | + | Chr1:89423242-89423261 | None:intergenic | 30.0% |
| !! | GACATTTTTGTTATCAAACC+CGG | + | Chr1:89424611-89424630 | None:intergenic | 30.0% |
| !! | TTGGACTTGCTAAATTATTC+TGG | - | Chr1:89425307-89425326 | MsG0180005271.01.T01:CDS | 30.0% |
| !! | TTTGATTTTGACCTGAGTTT+AGG | - | Chr1:89424804-89424823 | MsG0180005271.01.T01:intron | 30.0% |
| !!! | CTTTTTTTTCCTTTTCATGC+AGG | - | Chr1:89424085-89424104 | MsG0180005271.01.T01:three_prime_UTR | 30.0% |
| !!! | TACAAGGAAGTAACCTTTTT+TGG | - | Chr1:89425499-89425518 | MsG0180005271.01.T01:intron | 30.0% |
| !!! | TCTTTCTAGGGCTTTTTATA+AGG | - | Chr1:89425587-89425606 | MsG0180005271.01.T01:CDS | 30.0% |
| AAAACCAGTGATATTCGGTT+CGG | - | Chr1:89424760-89424779 | MsG0180005271.01.T01:intron | 35.0% | |
| AAAGCCCTAGAAAGAGTAAA+AGG | + | Chr1:89425582-89425601 | None:intergenic | 35.0% | |
| AACTAAGCATGATGAGAGAA+AGG | + | Chr1:89424674-89424693 | None:intergenic | 35.0% | |
| AAGACTGGGAAATTAATACC+GGG | - | Chr1:89424590-89424609 | MsG0180005271.01.T01:CDS | 35.0% | |
| ACAAGATACTGCTGATGATA+AGG | - | Chr1:89424181-89424200 | MsG0180005271.01.T01:three_prime_UTR | 35.0% | |
| ACTAAGCATGATGAGAGAAA+GGG | + | Chr1:89424673-89424692 | None:intergenic | 35.0% | |
| AGAAACAATTATTCACTGCG+TGG | + | Chr1:89423269-89423288 | None:intergenic | 35.0% | |
| CGTACTAAAATTGTTTGCGA+TGG | - | Chr1:89423240-89423259 | MsG0180005271.01.T01:three_prime_UTR | 35.0% | |
| TATTTCAATGGCAAACCTGT+AGG | - | Chr1:89423146-89423165 | MsG0180005271.01.T01:three_prime_UTR | 35.0% | |
| TCAGGTCAAAATCAAAGGTA+TGG | + | Chr1:89424800-89424819 | None:intergenic | 35.0% | |
| TGATTGATCGAAGAATGGTA+AGG | - | Chr1:89423756-89423775 | MsG0180005271.01.T01:intron | 35.0% | |
| TTGACTCTATGTTTGTCAGA+GGG | - | Chr1:89423689-89423708 | MsG0180005271.01.T01:intron | 35.0% | |
| TTTCACATGAGAAGCTACTT+TGG | - | Chr1:89424245-89424264 | MsG0180005271.01.T01:three_prime_UTR | 35.0% | |
| ! | ATTGACTCTATGTTTGTCAG+AGG | - | Chr1:89423688-89423707 | MsG0180005271.01.T01:intron | 35.0% |
| ! | CTTTTTGATGAATGGTGAAC+CGG | - | Chr1:89423376-89423395 | MsG0180005271.01.T01:three_prime_UTR | 35.0% |
| ! | GAAGATGATCTTTTATGCAC+TGG | + | Chr1:89425287-89425306 | None:intergenic | 35.0% |
| ! | GATCAATTTAAGCTTGGTGA+AGG | - | Chr1:89423458-89423477 | MsG0180005271.01.T01:three_prime_UTR | 35.0% |
| ! | GTTGACTTTATGCCAAAATG+CGG | - | Chr1:89424374-89424393 | MsG0180005271.01.T01:three_prime_UTR | 35.0% |
| !! | ATTTAACTTGGGACATTGTC+TGG | - | Chr1:89424715-89424734 | MsG0180005271.01.T01:intron | 35.0% |
| !! | GATTTTGGTGAAAGTGCAAT+TGG | - | Chr1:89423545-89423564 | MsG0180005271.01.T01:three_prime_UTR | 35.0% |
| !!! | GATTTTCGATGGTTTGCTTT+AGG | - | Chr1:89424434-89424453 | MsG0180005271.01.T01:intron | 35.0% |
| !!! | TGCAGGGTAACTATTTTTAG+CGG | + | Chr1:89424560-89424579 | None:intergenic | 35.0% |
| AACCTGCAATAGACCATGTT+TGG | + | Chr1:89425187-89425206 | None:intergenic | 40.0% | |
| AAGTCCTTCATGATGCTGTT+AGG | - | Chr1:89423501-89423520 | MsG0180005271.01.T01:three_prime_UTR | 40.0% | |
| AATAGACTAGAGACTTTCGG+AGG | + | Chr1:89423130-89423149 | None:intergenic | 40.0% | |
| AATAGTTACCCTGCATACGA+AGG | - | Chr1:89424565-89424584 | MsG0180005271.01.T01:CDS | 40.0% | |
| ACATTTATCGGACAAGACTG+AGG | - | Chr1:89424290-89424309 | MsG0180005271.01.T01:three_prime_UTR | 40.0% | |
| ACTTGGAGTTACCATAATGG+AGG | - | Chr1:89424631-89424650 | MsG0180005271.01.T01:intron | 40.0% | |
| AGAGCAGTCAACAGCAATTA+TGG | - | Chr1:89424493-89424512 | MsG0180005271.01.T01:CDS | 40.0% | |
| AGTCCTTCATGATGCTGTTA+GGG | - | Chr1:89423502-89423521 | MsG0180005271.01.T01:three_prime_UTR | 40.0% | |
| AGTCTTTACCTTCGTATGCA+GGG | + | Chr1:89424576-89424595 | None:intergenic | 40.0% | |
| ATAGACTAGAGACTTTCGGA+GGG | + | Chr1:89423129-89423148 | None:intergenic | 40.0% | |
| ATCCGGATTCAATTCCAGAT+TGG | - | Chr1:89424349-89424368 | MsG0180005271.01.T01:three_prime_UTR | 40.0% | |
| ATGGTCTATTGCAGGTTATC+TGG | - | Chr1:89425190-89425209 | MsG0180005271.01.T01:CDS | 40.0% | |
| CATAAACACCCTGCATGAAA+AGG | + | Chr1:89424097-89424116 | None:intergenic | 40.0% | |
| CATAAAGTCAACAGCCAATC+TGG | + | Chr1:89424366-89424385 | None:intergenic | 40.0% | |
| CATCTGCTTGTCTTCTTCAA+GGG | + | Chr1:89425261-89425280 | None:intergenic | 40.0% | |
| CGGTTCACCATTCATCAAAA+AGG | + | Chr1:89423378-89423397 | None:intergenic | 40.0% | |
| CGTGCTTACACAAAATCTAC+CGG | - | Chr1:89423614-89423633 | MsG0180005271.01.T01:three_prime_UTR | 40.0% | |
| CTGCATGATTGATCGAAGAA+TGG | - | Chr1:89423751-89423770 | MsG0180005271.01.T01:intron | 40.0% | |
| GGAAACAGATACTCTTATCG+CGG | - | Chr1:89423523-89423542 | MsG0180005271.01.T01:three_prime_UTR | 40.0% | |
| GGATCTTATTGAAGCTCGTT+GGG | - | Chr1:89424514-89424533 | MsG0180005271.01.T01:CDS | 40.0% | |
| GGATGGCCTGAATATTATGA+TGG | - | Chr1:89425122-89425141 | MsG0180005271.01.T01:CDS | 40.0% | |
| GGTAAGCATGGAAGATATGT+TGG | - | Chr1:89425143-89425162 | MsG0180005271.01.T01:CDS | 40.0% | |
| GTCACTTGGAGTTACCATAA+TGG | - | Chr1:89424628-89424647 | MsG0180005271.01.T01:intron | 40.0% | |
| GTGCTTACACAAAATCTACC+GGG | - | Chr1:89423615-89423634 | MsG0180005271.01.T01:three_prime_UTR | 40.0% | |
| TACCAAACATGGTCTATTGC+AGG | - | Chr1:89425182-89425201 | MsG0180005271.01.T01:CDS | 40.0% | |
| TCATCTGCTTGTCTTCTTCA+AGG | + | Chr1:89425262-89425281 | None:intergenic | 40.0% | |
| TGACTCTATGTTTGTCAGAG+GGG | - | Chr1:89423690-89423709 | MsG0180005271.01.T01:intron | 40.0% | |
| TGCATACGAAGGTAAAGACT+GGG | - | Chr1:89424576-89424595 | MsG0180005271.01.T01:CDS | 40.0% | |
| TGCTTACACAAAATCTACCG+GGG | - | Chr1:89423616-89423635 | MsG0180005271.01.T01:three_prime_UTR | 40.0% | |
| TGGATCTTATTGAAGCTCGT+TGG | - | Chr1:89424513-89424532 | MsG0180005271.01.T01:CDS | 40.0% | |
| TTCAGACAGAGTTAAATCCC+CGG | + | Chr1:89423636-89423655 | None:intergenic | 40.0% | |
| TTTCCCTAACAGCATCATGA+AGG | + | Chr1:89423508-89423527 | None:intergenic | 40.0% | |
| ! | AAATGCGGTGGCTACTTTAT+CGG | - | Chr1:89424389-89424408 | MsG0180005271.01.T01:three_prime_UTR | 40.0% |
| ! | ACTTGCTGAGAATCGTTTGA+TGG | - | Chr1:89425094-89425113 | MsG0180005271.01.T01:CDS | 40.0% |
| ! | AGCCAATCTGGAATTGAATC+CGG | + | Chr1:89424354-89424373 | None:intergenic | 40.0% |
| ! | ATAAAGTAGCCACCGCATTT+TGG | + | Chr1:89424389-89424408 | None:intergenic | 40.0% |
| ! | ATAATTGCTGTTGACTGCTC+TGG | + | Chr1:89424494-89424513 | None:intergenic | 40.0% |
| ! | ATCAAAAAGGCTAGAGCACT+TGG | + | Chr1:89423365-89423384 | None:intergenic | 40.0% |
| ! | GATACTCTTATCGCGGATTT+TGG | - | Chr1:89423530-89423549 | MsG0180005271.01.T01:three_prime_UTR | 40.0% |
| ! | GTTACCATAATGGAGGATCT+TGG | - | Chr1:89424638-89424657 | MsG0180005271.01.T01:intron | 40.0% |
| ! | TCAAAAAGGCTAGAGCACTT+GGG | + | Chr1:89423364-89423383 | None:intergenic | 40.0% |
| !! | ATTGCACGTCTTGCTATTTG+CGG | + | Chr1:89425071-89425090 | None:intergenic | 40.0% |
| !! | CTTTTCATGCAGGGTGTTTA+TGG | - | Chr1:89424095-89424114 | MsG0180005271.01.T01:three_prime_UTR | 40.0% |
| !! | GCTCTAGCCTTTTTGATGAA+TGG | - | Chr1:89423368-89423387 | MsG0180005271.01.T01:three_prime_UTR | 40.0% |
| !! | GGAAGCGTTAAAAATGACTC+CGG | + | Chr1:89424906-89424925 | None:intergenic | 40.0% |
| !! | TGAAGGACTTTGAAACTAGC+CGG | + | Chr1:89423491-89423510 | None:intergenic | 40.0% |
| AAATCATCCCCAAGTGTGAG+GGG | + | Chr1:89425238-89425257 | None:intergenic | 45.0% | |
| AAATGTCAGTCCAGCTCGAA+TGG | - | Chr1:89424412-89424431 | MsG0180005271.01.T01:three_prime_UTR | 45.0% | |
| ATCGTTTGATGGAGGATGGA+TGG | - | Chr1:89425105-89425124 | MsG0180005271.01.T01:CDS | 45.0% | |
| CAATCCGAACCGAATATCAC+TGG | + | Chr1:89424767-89424786 | None:intergenic | 45.0% | |
| CACCAAAATCCAGAGTCAAC+AGG | + | Chr1:89423581-89423600 | None:intergenic | 45.0% | |
| CAGTCTTTACCTTCGTATGC+AGG | + | Chr1:89424577-89424596 | None:intergenic | 45.0% | |
| CATCAGCACAAAGGAGAGTT+GGG | + | Chr1:89423727-89423746 | None:intergenic | 45.0% | |
| CATCGAAAATCCATTCGAGC+TGG | + | Chr1:89424425-89424444 | None:intergenic | 45.0% | |
| CTGCATACGAAGGTAAAGAC+TGG | - | Chr1:89424575-89424594 | MsG0180005271.01.T01:CDS | 45.0% | |
| GAAATCATCCCCAAGTGTGA+GGG | + | Chr1:89425239-89425258 | None:intergenic | 45.0% | |
| GACTTTATGCCAAAATGCGG+TGG | - | Chr1:89424377-89424396 | MsG0180005271.01.T01:three_prime_UTR | 45.0% | |
| GAGAATCGTTTGATGGAGGA+TGG | - | Chr1:89425101-89425120 | MsG0180005271.01.T01:CDS | 45.0% | |
| GATGAGAGAAAGGGAAAACC+TGG | + | Chr1:89424664-89424683 | None:intergenic | 45.0% | |
| TGAAGACGTTGCGTCTTCAA+GGG | - | Chr1:89423420-89423439 | MsG0180005271.01.T01:three_prime_UTR | 45.0% | |
| TGCTGAGAATCGTTTGATGG+AGG | - | Chr1:89425097-89425116 | MsG0180005271.01.T01:CDS | 45.0% | |
| ! | TCTGGTTTCCAAGATGATGC+TGG | - | Chr1:89425208-89425227 | MsG0180005271.01.T01:CDS | 45.0% |
| !! | CAGCTCGAATGGATTTTCGA+TGG | - | Chr1:89424423-89424442 | MsG0180005271.01.T01:intron | 45.0% |
| !!! | CTCCTGTTGACTCTGGATTT+TGG | - | Chr1:89423576-89423595 | MsG0180005271.01.T01:three_prime_UTR | 45.0% |
| !!! | CTGTTGACTCTGGATTTTGG+TGG | - | Chr1:89423579-89423598 | MsG0180005271.01.T01:three_prime_UTR | 45.0% |
| ACAGCTGCTTGCATCAAGAC+AGG | - | Chr1:89425041-89425060 | MsG0180005271.01.T01:CDS | 50.0% | |
| CAGCTGCTTGCATCAAGACA+GGG | - | Chr1:89425042-89425061 | MsG0180005271.01.T01:CDS | 50.0% | |
| CCAACTCTCCTTTGTGCTGA+TGG | - | Chr1:89423725-89423744 | MsG0180005271.01.T01:intron | 50.0% | |
| CCATCAGCACAAAGGAGAGT+TGG | + | Chr1:89423728-89423747 | None:intergenic | 50.0% | |
| CTGAAGACGTTGCGTCTTCA+AGG | - | Chr1:89423419-89423438 | MsG0180005271.01.T01:three_prime_UTR | 50.0% | |
| CTGGCCAAGATCCTCCATTA+TGG | + | Chr1:89424645-89424664 | None:intergenic | 50.0% | |
| GGAAATCATCCCCAAGTGTG+AGG | + | Chr1:89425240-89425259 | None:intergenic | 50.0% | |
| GGTTTCCAAGATGATGCTGG+AGG | - | Chr1:89425211-89425230 | MsG0180005271.01.T01:CDS | 50.0% | |
| TCTTGAGTGCAGTGCTCATG+TGG | - | Chr1:89425012-89425031 | MsG0180005271.01.T01:CDS | 50.0% | |
| TGAAGCTCGTTGGGATGAGT+TGG | - | Chr1:89424523-89424542 | MsG0180005271.01.T01:CDS | 50.0% | |
| TGCAGCATCCATCAGCACAA+AGG | + | Chr1:89423736-89423755 | None:intergenic | 50.0% | |
| ! | CATAATGGAGGATCTTGGCC+AGG | - | Chr1:89424643-89424662 | MsG0180005271.01.T01:intron | 50.0% |
| !! | AGAGTTGCTCCTGTTGACTC+TGG | - | Chr1:89423569-89423588 | MsG0180005271.01.T01:three_prime_UTR | 50.0% |
| !! | GCTTGGTGAAGGTGTTATGC+CGG | - | Chr1:89423469-89423488 | MsG0180005271.01.T01:three_prime_UTR | 50.0% |
| AGACGTTGCGTCTTCAAGGG+TGG | - | Chr1:89423423-89423442 | MsG0180005271.01.T01:three_prime_UTR | 55.0% | |
| AGACTTTCGGAGGGATTCCC+AGG | + | Chr1:89423120-89423139 | None:intergenic | 55.0% | |
| GACGTTGCGTCTTCAAGGGT+GGG | - | Chr1:89423424-89423443 | MsG0180005271.01.T01:three_prime_UTR | 55.0% | |
| !! | GCTCGTTGGGATGAGTTGGT+CGG | - | Chr1:89424527-89424546 | MsG0180005271.01.T01:CDS | 55.0% |
| ACGGCTGCAAGTGTGCCTAC+AGG | + | Chr1:89423164-89423183 | None:intergenic | 60.0% | |
| AGCCAATGCTTGCCGATGCC+TGG | - | Chr1:89423099-89423118 | MsG0180005271.01.T01:three_prime_UTR | 60.0% | |
| CTGGAGGACCCCTCACACTT+GGG | - | Chr1:89425227-89425246 | MsG0180005271.01.T01:CDS | 60.0% | |
| GCCAATGCTTGCCGATGCCT+GGG | - | Chr1:89423100-89423119 | MsG0180005271.01.T01:three_prime_UTR | 60.0% | |
| GGGGTCCTCCAGCATCATCT+TGG | + | Chr1:89425219-89425238 | None:intergenic | 60.0% | |
| TCGGAGGGATTCCCAGGCAT+CGG | + | Chr1:89423114-89423133 | None:intergenic | 60.0% | |
| TGGAGGACCCCTCACACTTG+GGG | - | Chr1:89425228-89425247 | MsG0180005271.01.T01:CDS | 60.0% | |
| !! | GCATCGGCAAGCATTGGCTG+AGG | + | Chr1:89423098-89423117 | None:intergenic | 60.0% |
| !! | TCCCAGGCATCGGCAAGCAT+TGG | + | Chr1:89423104-89423123 | None:intergenic | 60.0% |
| GCTGGAGGACCCCTCACACT+TGG | - | Chr1:89425226-89425245 | MsG0180005271.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 89423070 | 89425651 | 89423070 | ID=MsG0180005271.01;Name=MsG0180005271.01 |
| Chr1 | mRNA | 89423070 | 89425651 | 89423070 | ID=MsG0180005271.01.T01;Parent=MsG0180005271.01;Name=MsG0180005271.01.T01;_AED=0.49;_eAED=0.49;_QI=34|1|1|1|0.5|0.4|5|985|242 |
| Chr1 | exon | 89423070 | 89423317 | 89423070 | ID=MsG0180005271.01.T01:exon:47749;Parent=MsG0180005271.01.T01 |
| Chr1 | exon | 89423339 | 89423697 | 89423339 | ID=MsG0180005271.01.T01:exon:47748;Parent=MsG0180005271.01.T01 |
| Chr1 | five_prime_UTR | 89425618 | 89425651 | 89425618 | ID=MsG0180005271.01.T01:five_prime_utr;Parent=MsG0180005271.01.T01 |
| Chr1 | CDS | 89425501 | 89425617 | 89425501 | ID=MsG0180005271.01.T01:cds;Parent=MsG0180005271.01.T01 |
| Chr1 | CDS | 89424949 | 89425380 | 89424949 | ID=MsG0180005271.01.T01:cds;Parent=MsG0180005271.01.T01 |
| Chr1 | CDS | 89424435 | 89424614 | 89424435 | ID=MsG0180005271.01.T01:cds;Parent=MsG0180005271.01.T01 |
| Chr1 | three_prime_UTR | 89424057 | 89424434 | 89424057 | ID=MsG0180005271.01.T01:three_prime_utr;Parent=MsG0180005271.01.T01 |
| Chr1 | three_prime_UTR | 89423339 | 89423697 | 89423339 | ID=MsG0180005271.01.T01:three_prime_utr;Parent=MsG0180005271.01.T01 |
| Chr1 | three_prime_UTR | 89423070 | 89423317 | 89423070 | ID=MsG0180005271.01.T01:three_prime_utr;Parent=MsG0180005271.01.T01 |
| Chr1 | mRNA | 89423171 | 89425651 | 89423171 | ID=MsG0180005271.01.T02;Parent=MsG0180005271.01;Name=MsG0180005271.01.T02;_AED=0.49;_eAED=0.49;_QI=34|1|1|1|0.66|0.5|4|905|242 |
| Chr1 | exon | 89423171 | 89423697 | 89423171 | ID=MsG0180005271.01.T02:exon:47750;Parent=MsG0180005271.01.T02 |
| Chr1 | five_prime_UTR | 89425618 | 89425651 | 89425618 | ID=MsG0180005271.01.T02:five_prime_utr;Parent=MsG0180005271.01.T02 |
| Chr1 | CDS | 89425501 | 89425617 | 89425501 | ID=MsG0180005271.01.T02:cds;Parent=MsG0180005271.01.T02 |
| Chr1 | CDS | 89424949 | 89425380 | 89424949 | ID=MsG0180005271.01.T02:cds;Parent=MsG0180005271.01.T02 |
| Chr1 | CDS | 89424435 | 89424614 | 89424435 | ID=MsG0180005271.01.T02:cds;Parent=MsG0180005271.01.T02 |
| Chr1 | three_prime_UTR | 89424057 | 89424434 | 89424057 | ID=MsG0180005271.01.T02:three_prime_utr;Parent=MsG0180005271.01.T02 |
| Chr1 | three_prime_UTR | 89423171 | 89423697 | 89423171 | ID=MsG0180005271.01.T02:three_prime_utr;Parent=MsG0180005271.01.T02 |
| Chr1 | mRNA | 89423402 | 89424338 | 89423402 | ID=MsG0180005271.01.T03;Parent=MsG0180005271.01;Name=MsG0180005271.01.T03;_AED=0.50;_eAED=0.53;_QI=0|0|0|1|0.5|0.66|3|0|179 |
| Chr1 | exon | 89424135 | 89424338 | 89424135 | ID=MsG0180005271.01.T03:exon:47753;Parent=MsG0180005271.01.T03 |
| Chr1 | exon | 89423945 | 89423979 | 89423945 | ID=MsG0180005271.01.T03:exon:47752;Parent=MsG0180005271.01.T03 |
| Chr1 | exon | 89423402 | 89423702 | 89423402 | ID=MsG0180005271.01.T03:exon:47751;Parent=MsG0180005271.01.T03 |
| Chr1 | CDS | 89424135 | 89424338 | 89424135 | ID=MsG0180005271.01.T03:cds;Parent=MsG0180005271.01.T03 |
| Chr1 | CDS | 89423945 | 89423979 | 89423945 | ID=MsG0180005271.01.T03:cds;Parent=MsG0180005271.01.T03 |
| Chr1 | CDS | 89423402 | 89423702 | 89423402 | ID=MsG0180005271.01.T03:cds;Parent=MsG0180005271.01.T03 |
| Gene Sequence |
| Protein sequence |
