AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020331.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020331.01.T01 MTR_4g048320 77.670 206 16 2 1 206 1 176 1.77e-103 305
MsG0480020331.01.T01 MTR_2g088270 55.676 185 49 2 1 185 1 152 3.53e-64 204
MsG0480020331.01.T01 MTR_4g048320 83.636 110 17 1 97 206 10 118 1.50e-54 177
MsG0480020331.01.T01 MTR_3g073370 37.589 141 78 4 48 185 12 145 1.44e-18 83.2
MsG0480020331.01.T01 MTR_3g073370 32.558 172 79 4 15 185 9 144 1.50e-17 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020331.01.T01 AT1G05170 47.312 186 69 1 1 186 1 157 2.10e-54 177
MsG0480020331.01.T01 AT1G05170 47.312 186 69 1 1 186 1 157 2.03e-53 176
MsG0480020331.01.T01 AT2G32430 47.594 187 67 3 1 185 1 158 5.90e-50 167
MsG0480020331.01.T01 AT4G26940 43.750 176 67 2 10 185 14 157 2.38e-43 147
MsG0480020331.01.T01 AT4G26940 43.750 176 67 2 10 185 14 157 5.89e-42 146
MsG0480020331.01.T01 AT1G11730 36.364 187 63 6 1 185 1 133 1.84e-23 97.1
MsG0480020331.01.T01 AT1G32930 33.702 181 84 5 6 186 5 149 5.64e-15 73.2
MsG0480020331.01.T01 AT1G77810 30.899 178 70 6 11 185 6 133 3.01e-13 68.2
MsG0480020331.01.T01 AT1G22015 42.683 82 43 1 105 186 68 145 5.17e-11 61.6

Find 132 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCAGGCTTGGTTTCTTTC+TGG 0.071661 4:-39213680 None:intergenic
CCTAATAAATTGATATAATT+TGG 0.146827 4:+39213963 MsG0480020331.01.T01:three_prime_UTR
CCAAATTATATCAATTTATT+AGG 0.169156 4:-39213963 None:intergenic
CTTATATCTTATGCTATCTA+TGG 0.181348 4:-39209316 None:intergenic
TCAATAGGAGCTTGGTTTAT+TGG 0.210268 4:+39213020 MsG0480020331.01.T01:three_prime_UTR
TTGCCACTGCTGTGAGCTTA+TGG 0.241789 4:+39212280 MsG0480020331.01.T01:three_prime_UTR
ACACATAAATAATCAATTAT+TGG 0.257213 4:-39214010 None:intergenic
GTGTAGCTTGTTTGCAAGTA+TGG 0.265759 4:-39209279 None:intergenic
CATTGGAAGTTTGGCGAGTC+TGG 0.279395 4:+39212785 MsG0480020331.01.T01:three_prime_UTR
ACTTCAATATGCAAAATAAC+TGG 0.284348 4:-39209483 None:intergenic
TTAAATATCATAACAGGATA+TGG 0.287200 4:+39210864 MsG0480020331.01.T01:CDS
GTATGCTATTTCCAATGATT+TGG 0.294141 4:+39212841 MsG0480020331.01.T01:three_prime_UTR
AACTATTGAACATATTGTTT+GGG 0.296971 4:+39210796 MsG0480020331.01.T01:CDS
TTTATGGAGTGCTTCTTTCT+AGG 0.298948 4:+39213608 MsG0480020331.01.T01:three_prime_UTR
GAGAAGGTGAAAATGCTTTA+TGG 0.301896 4:+39213592 MsG0480020331.01.T01:three_prime_UTR
GAACCCGAGCATTGGAAGTT+TGG 0.312071 4:+39212776 MsG0480020331.01.T01:three_prime_UTR
TCCAATTTAGTTACAAGATC+TGG 0.320538 4:+39211074 MsG0480020331.01.T01:intron
GGAACTATTAACAAACAAAA+TGG 0.326167 4:-39213921 None:intergenic
TAACTATTGAACATATTGTT+TGG 0.332092 4:+39210795 MsG0480020331.01.T01:CDS
TGGAGTATTCCTGAACAAAA+TGG 0.340829 4:+39210884 MsG0480020331.01.T01:CDS
GAAGTGTAATATCTCAGAAA+TGG 0.343150 4:+39209587 MsG0480020331.01.T01:CDS
ACTTCCAATGCTCGGGTTCA+TGG 0.351453 4:-39212772 None:intergenic
CTCCTGTTTCAGAAGATATA+AGG 0.357539 4:+39211336 MsG0480020331.01.T01:CDS
CTGGAATGCTCTTCACTAAC+AGG 0.360031 4:+39209641 MsG0480020331.01.T01:CDS
TTGTCTTTGCTGACAATTCA+AGG 0.362315 4:-39212248 None:intergenic
TTTGTGTTGCTTCATTTGAT+TGG 0.363073 4:+39213511 MsG0480020331.01.T01:three_prime_UTR
TGCCACTGCTGTGAGCTTAT+GGG 0.367282 4:+39212281 MsG0480020331.01.T01:three_prime_UTR
GGTAATAATCTTCCTGAGTT+AGG 0.368466 4:-39213654 None:intergenic
AAGAAGCTAGAGGAAGAAAA+AGG 0.375991 4:+39211593 MsG0480020331.01.T01:CDS
ATATTTCTCTCTATATATAC+TGG 0.381326 4:-39213737 None:intergenic
TACATTGGATGCATGAAATC+TGG 0.384729 4:+39212640 MsG0480020331.01.T01:three_prime_UTR
GTCCTTATATCTTCTGAAAC+AGG 0.385267 4:-39211338 None:intergenic
AGACCGACAGCTTCAGAAAC+TGG 0.394152 4:+39210914 MsG0480020331.01.T01:CDS
GCTATCTATGGGTGTTGTGT+TGG 0.397598 4:-39209304 None:intergenic
GAAATGTTAAATATCATAAC+AGG 0.399694 4:+39210858 MsG0480020331.01.T01:CDS
TATGTATGTTGCCAAATCAT+TGG 0.411417 4:-39212852 None:intergenic
GACGATGTTCATGTAAATAT+AGG 0.415818 4:+39212330 MsG0480020331.01.T01:three_prime_UTR
TCTATTCTTTGTTGCTTGAA+AGG 0.423223 4:+39213897 MsG0480020331.01.T01:three_prime_UTR
CTGCTTCAATAGCTCTATCT+AGG 0.425000 4:-39212008 None:intergenic
CTATTCTTTGTTGCTTGAAA+GGG 0.429201 4:+39213898 MsG0480020331.01.T01:three_prime_UTR
CTATCTATGGGTGTTGTGTT+GGG 0.436218 4:-39209303 None:intergenic
TAGAGAAAGAATGAAAATAG+TGG 0.439106 4:-39209407 None:intergenic
GTACATAGAAGGTGTGGAGA+AGG 0.442264 4:+39213576 MsG0480020331.01.T01:three_prime_UTR
GGAGCTGCAGTGGAATTTGT+AGG 0.445573 4:+39213532 MsG0480020331.01.T01:three_prime_UTR
TATGTATGGTGAAGATTTCA+AGG 0.447691 4:+39211119 MsG0480020331.01.T01:CDS
ATCTCTTCTTAAAATGTAGA+AGG 0.449785 4:-39213822 None:intergenic
TTAATACTGCCTTTAGCAGC+AGG 0.450178 4:+39211405 MsG0480020331.01.T01:CDS
TTTATGCAGAATCATGTTGA+AGG 0.456059 4:+39212222 MsG0480020331.01.T01:intron
TCCTATTGACACATCCTCAT+TGG 0.456204 4:-39213006 None:intergenic
CTTTGCTGTGGCACTCCTCC+AGG 0.460318 4:+39213074 MsG0480020331.01.T01:three_prime_UTR
AATAATCAATTATTGGCAAA+AGG 0.465631 4:-39214003 None:intergenic
TACTTTGTTGCAGAGGGGTA+AGG 0.467767 4:+39212747 MsG0480020331.01.T01:intron
GGATTAAAGAAGTACATAGA+AGG 0.469286 4:+39213565 MsG0480020331.01.T01:three_prime_UTR
GAATTTGTAGGTCCGCTGAT+AGG 0.469957 4:+39213544 MsG0480020331.01.T01:three_prime_UTR
CTCGCCAAACTTCCAATGCT+CGG 0.470366 4:-39212780 None:intergenic
CCTTTAGCAGCAGGAAAAGA+AGG 0.471407 4:+39211414 MsG0480020331.01.T01:CDS
AAGTGTAATATCTCAGAAAT+GGG 0.475589 4:+39209588 MsG0480020331.01.T01:CDS
GGGCAAGAGAAAGTACCTTA+TGG 0.476193 4:+39211373 MsG0480020331.01.T01:CDS
CTGTATTGAATGTAGAGCTT+TGG 0.481497 4:+39211241 MsG0480020331.01.T01:intron
TCATGGTTTGCAGCTAGATA+AGG 0.483793 4:+39213848 MsG0480020331.01.T01:three_prime_UTR
GCTTGTTTGCAAGTATGGTA+AGG 0.487081 4:-39209274 None:intergenic
ATAATTGATTATTTATGTGT+TGG 0.487550 4:+39214013 MsG0480020331.01.T01:three_prime_UTR
GCATGGAGATTTCTTGAGGC+TGG 0.488147 4:+39212041 MsG0480020331.01.T01:three_prime_UTR
TGTCTCGGTAGTTTCTGTGC+TGG 0.488168 4:+39209622 MsG0480020331.01.T01:CDS
TTGTTTGTTAATAGTTCCAA+TGG 0.493333 4:+39213926 MsG0480020331.01.T01:three_prime_UTR
CTTAAAATGTAGAAGGTCCA+TGG 0.495200 4:-39213815 None:intergenic
GCCAATGAGGATGTGTCAAT+AGG 0.497688 4:+39213005 MsG0480020331.01.T01:three_prime_UTR
TTCAAATTTAGAGATGGACT+TGG 0.502922 4:+39211274 MsG0480020331.01.T01:CDS
AATAAATTGATATAATTTGG+TGG 0.503156 4:+39213966 MsG0480020331.01.T01:three_prime_UTR
ATAGTGGAGTTTAAGAAAGA+TGG 0.503451 4:-39209391 None:intergenic
TCGCCAAACTTCCAATGCTC+GGG 0.504026 4:-39212779 None:intergenic
GGAGCTTGATAGCTAGCCAT+TGG 0.506135 4:-39213942 None:intergenic
GGCTTGGTTTCTTTCTGGAG+TGG 0.512180 4:-39213675 None:intergenic
TATTAATACCTACGACCATA+AGG 0.514517 4:-39211388 None:intergenic
GATGGACTTGGCTGCTGCGA+GGG 0.515443 4:+39211286 MsG0480020331.01.T01:CDS
AAGTACTTCCGCCATGCCAC+AGG 0.515451 4:+39212812 MsG0480020331.01.T01:three_prime_UTR
TGTATCTTAGTAATTCCCCT+AGG 0.517860 4:+39214069 MsG0480020331.01.T01:three_prime_UTR
GACTATTTCAAATTTAGAGA+TGG 0.518519 4:+39211268 MsG0480020331.01.T01:CDS
TTATATCTTATGCTATCTAT+GGG 0.521678 4:-39209315 None:intergenic
TGCGAATGGAAGGCGCAAGC+AGG 0.529852 4:+39213483 MsG0480020331.01.T01:three_prime_UTR
GGTTTCAGATTGCGAATGGA+AGG 0.531340 4:+39213473 MsG0480020331.01.T01:intron
GTATCTTAGTAATTCCCCTA+GGG 0.535039 4:+39214070 MsG0480020331.01.T01:three_prime_UTR
TCAATTATTGGCAAAAGGAA+AGG 0.536443 4:-39213998 None:intergenic
CAGCAGGAAAAGAAGGGACT+CGG 0.538952 4:+39211421 MsG0480020331.01.T01:CDS
TATAAGGACGACTGAGTCGA+CGG 0.542612 4:+39211352 MsG0480020331.01.T01:CDS
TGATGAGTTCTTCCTAACTC+AGG 0.542722 4:+39213642 MsG0480020331.01.T01:three_prime_UTR
TCATTTGATTGGAGCTGCAG+TGG 0.544715 4:+39213522 MsG0480020331.01.T01:three_prime_UTR
GGTACCATGAACCCGAGCAT+TGG 0.545810 4:+39212768 MsG0480020331.01.T01:three_prime_UTR
TCAAAACAACGGATATACAT+TGG 0.552136 4:+39212625 MsG0480020331.01.T01:three_prime_UTR
CTTCAATATGCAAAATAACT+GGG 0.553629 4:-39209482 None:intergenic
GTTTGGTTTCAGATTGCGAA+TGG 0.555425 4:+39213469 MsG0480020331.01.T01:intron
TGTTTGGGGAATCAAGTGGA+TGG 0.555814 4:+39210811 MsG0480020331.01.T01:CDS
TTTGATAACATGGATAATAG+GGG 0.556923 4:+39211562 MsG0480020331.01.T01:CDS
AGGATGTGTCAATAGGAGCT+TGG 0.557584 4:+39213012 MsG0480020331.01.T01:three_prime_UTR
CATTGGGAGAAACTCTCGTT+AGG 0.559599 4:+39212596 MsG0480020331.01.T01:three_prime_UTR
CGCGAAACTAGAGATATGTA+TGG 0.560067 4:+39211105 MsG0480020331.01.T01:CDS
CTTGTTTGCAAGTATGGTAA+GGG 0.569379 4:-39209273 None:intergenic
TTACCAGTTTCTGAAGCTGT+CGG 0.571354 4:-39210917 None:intergenic
AGTTACAAGATCTGGAAATG+AGG 0.572395 4:+39211082 MsG0480020331.01.T01:intron
ATAGCATAAGATATAAGCTA+AGG 0.576272 4:+39209322 MsG0480020331.01.T01:five_prime_UTR
TAAATTGAATGTAGTTTCCG+AGG 0.576758 4:+39210937 MsG0480020331.01.T01:CDS
AAGAGAGAATGCTTGCTCCA+TGG 0.578870 4:+39213798 MsG0480020331.01.T01:three_prime_UTR
AGATAGAGCTATTGAAGCAG+AGG 0.580020 4:+39212011 MsG0480020331.01.T01:three_prime_UTR
CATACAACTGCCCTGTGGCA+TGG 0.582197 4:-39212823 None:intergenic
CTTTAGCAGCAGGAAAAGAA+GGG 0.584908 4:+39211415 MsG0480020331.01.T01:CDS
AAAGAAGTACATAGAAGGTG+TGG 0.587665 4:+39213570 MsG0480020331.01.T01:three_prime_UTR
GAAGCAGAGGACAGAAAGCA+TGG 0.588213 4:+39212024 MsG0480020331.01.T01:three_prime_UTR
TACTTCTTTAATCCTATCAG+CGG 0.588432 4:-39213556 None:intergenic
ACTATTGAACATATTGTTTG+GGG 0.588538 4:+39210797 MsG0480020331.01.T01:CDS
GCAAGTATGGTAAGGGACGT+TGG 0.590601 4:-39209266 None:intergenic
TTAATGACGTGGAAAAGTAG+AGG 0.591395 4:+39209550 MsG0480020331.01.T01:exon
AAATTGAATGTAGTTTCCGA+GGG 0.596196 4:+39210938 MsG0480020331.01.T01:CDS
AGTTAGGAAGAACTCATCAA+AGG 0.596741 4:-39213638 None:intergenic
AGAAAGTACCTTATGGTCGT+AGG 0.607267 4:+39211380 MsG0480020331.01.T01:CDS
GTGGAGTTTAAGAAAGATGG+TGG 0.609959 4:-39209388 None:intergenic
ATCCCATAAGCTCACAGCAG+TGG 0.610258 4:-39212283 None:intergenic
GAAAGCATGGAGATTTCTTG+AGG 0.614966 4:+39212037 MsG0480020331.01.T01:three_prime_UTR
TTGGTTTATTGGACTTGACG+TGG 0.621784 4:+39213031 MsG0480020331.01.T01:three_prime_UTR
AGATGGACTTGGCTGCTGCG+AGG 0.622009 4:+39211285 MsG0480020331.01.T01:CDS
ATAAGGACGACTGAGTCGAC+GGG 0.634555 4:+39211353 MsG0480020331.01.T01:CDS
ATATTGTTTGGGGAATCAAG+TGG 0.635634 4:+39210807 MsG0480020331.01.T01:CDS
TCTTCATAAGTATGCCAATG+AGG 0.641650 4:+39212992 MsG0480020331.01.T01:three_prime_UTR
ATGTATGGTGAAGATTTCAA+GGG 0.663955 4:+39211120 MsG0480020331.01.T01:CDS
AAATTGTTACGAAGTAGAGT+CGG 0.664201 4:-39214103 None:intergenic
AGTACTTCCGCCATGCCACA+GGG 0.672475 4:+39212813 MsG0480020331.01.T01:three_prime_UTR
GTTCAAGAGTCAGTACGAAG+TGG 0.682952 4:+39211311 MsG0480020331.01.T01:CDS
GGACAAAAGAAAGAAGCTAG+AGG 0.691737 4:+39211583 MsG0480020331.01.T01:CDS
TATCTTAGTAATTCCCCTAG+GGG 0.695288 4:+39214071 MsG0480020331.01.T01:three_prime_UTR
ACAACTGCCCTGTGGCATGG+CGG 0.712956 4:-39212820 None:intergenic
GATGATCGAAGACTTTGCTG+TGG 0.722584 4:+39213062 MsG0480020331.01.T01:three_prime_UTR
TTAGGCATCGATCAAAACAA+CGG 0.738736 4:+39212614 MsG0480020331.01.T01:three_prime_UTR
AATAGCATACAACTGCCCTG+TGG 0.772018 4:-39212828 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTACATTATTATATTGTT+GGG - Chr4:39212442-39212461 None:intergenic 10.0%
!! CATACTAAAATAATAATAAT+TGG - Chr4:39211202-39211221 None:intergenic 10.0%
!! TATTATTAAAAAACTAATAG+AGG - Chr4:39209363-39209382 None:intergenic 10.0%
!! TATTTACATTATTATATTGT+TGG - Chr4:39212443-39212462 None:intergenic 10.0%
!!! ATACATATTTTTTTAAAAAC+CGG - Chr4:39212196-39212215 None:intergenic 10.0%
!!! ATTTTTTTTTTTTTGAAGAA+TGG + Chr4:39211882-39211901 MsG0480020331.01.T01:intron 10.0%
!! AAATTATTCTTTAATGTAGT+AGG - Chr4:39212895-39212914 None:intergenic 15.0%
!! AATAAATTGATATAATTTGG+TGG + Chr4:39213966-39213985 MsG0480020331.01.T01:three_prime_UTR 15.0%
!! ACACATAAATAATCAATTAT+TGG - Chr4:39214013-39214032 None:intergenic 15.0%
!! ATAATTGATTATTTATGTGT+TGG + Chr4:39214013-39214032 MsG0480020331.01.T01:three_prime_UTR 15.0%
!! ATTAAACAAAATCAAATCAA+TGG + Chr4:39212915-39212934 MsG0480020331.01.T01:intron 15.0%
!! CCAAATTATATCAATTTATT+AGG - Chr4:39213966-39213985 None:intergenic 15.0%
!! CCTAATAAATTGATATAATT+TGG + Chr4:39213963-39213982 MsG0480020331.01.T01:three_prime_UTR 15.0%
!! TAATTACTGTTTATGTTAAT+TGG + Chr4:39210266-39210285 MsG0480020331.01.T01:intron 15.0%
!!! AAAGCTTTTCTTTAAAAAAT+TGG + Chr4:39210350-39210369 MsG0480020331.01.T01:intron 15.0%
!!! AAGCTTTTCTTTAAAAAATT+GGG + Chr4:39210351-39210370 MsG0480020331.01.T01:intron 15.0%
!!! GATTGATTTGTTTATAATTA+TGG + Chr4:39209775-39209794 MsG0480020331.01.T01:intron 15.0%
!!! GTTTTATGTAATTTTCAATT+TGG + Chr4:39209689-39209708 MsG0480020331.01.T01:intron 15.0%
!!! TTTTTAAAGAAAAGCTTTTA+AGG - Chr4:39210348-39210367 None:intergenic 15.0%
!! AAAAAAAAGATTTAATGACG+TGG + Chr4:39209539-39209558 MsG0480020331.01.T01:exon 20.0%
!! AAAAATAATAAATGCTGCAT+TGG + Chr4:39210132-39210151 MsG0480020331.01.T01:intron 20.0%
!! AAATACTTTCTATTGTGAAT+TGG + Chr4:39212686-39212705 MsG0480020331.01.T01:intron 20.0%
!! AACTATTGAACATATTGTTT+GGG + Chr4:39210796-39210815 MsG0480020331.01.T01:CDS 20.0%
!! AATAATCAATTATTGGCAAA+AGG - Chr4:39214006-39214025 None:intergenic 20.0%
!! AATACTTTCTATTGTGAATT+GGG + Chr4:39212687-39212706 MsG0480020331.01.T01:intron 20.0%
!! ATATTTCTCTCTATATATAC+TGG - Chr4:39213740-39213759 None:intergenic 20.0%
!! GAAATAGTAATGAAACAAAA+AGG - Chr4:39212083-39212102 None:intergenic 20.0%
!! GAAATGTTAAATATCATAAC+AGG + Chr4:39210858-39210877 MsG0480020331.01.T01:CDS 20.0%
!! GGATGTAATTCAATAAATAA+GGG + Chr4:39210096-39210115 MsG0480020331.01.T01:intron 20.0%
!! GTTAACACTTTCAAATTATT+GGG + Chr4:39213443-39213462 MsG0480020331.01.T01:intron 20.0%
!! GTTTATAATTATGGAATAAG+TGG + Chr4:39209784-39209803 MsG0480020331.01.T01:intron 20.0%
!! TAACTATTGAACATATTGTT+TGG + Chr4:39210795-39210814 MsG0480020331.01.T01:CDS 20.0%
!! TAATCATAACTCAACTATAT+CGG + Chr4:39211848-39211867 MsG0480020331.01.T01:intron 20.0%
!! TACATAAAACATAGAAAACA+GGG - Chr4:39209679-39209698 None:intergenic 20.0%
!! TGGACAAAAATATATAGAAA+AGG - Chr4:39213720-39213739 None:intergenic 20.0%
!! TGGATGTAATTCAATAAATA+AGG + Chr4:39210095-39210114 MsG0480020331.01.T01:intron 20.0%
!! TTAAATATCATAACAGGATA+TGG + Chr4:39210864-39210883 MsG0480020331.01.T01:CDS 20.0%
!! TTAAATTGTTTATCCAAACA+TGG + Chr4:39213369-39213388 MsG0480020331.01.T01:intron 20.0%
!! TTACATAAAACATAGAAAAC+AGG - Chr4:39209680-39209699 None:intergenic 20.0%
!! TTAGAAGTAGTTATAATTCT+TGG + Chr4:39210631-39210650 MsG0480020331.01.T01:intron 20.0%
!! TTATATCTTATGCTATCTAT+GGG - Chr4:39209318-39209337 None:intergenic 20.0%
!!! AATAAATAAGGGTATAAAAG+TGG + Chr4:39210107-39210126 MsG0480020331.01.T01:intron 20.0%
!!! ATACTTTTTTTTATCAAGCA+AGG - Chr4:39211000-39211019 None:intergenic 20.0%
!!! ATTAATTATGTTGATTCCAA+TGG + Chr4:39210013-39210032 MsG0480020331.01.T01:intron 20.0%
!!! CAATAATTTGAAAGTGTTAA+CGG - Chr4:39213444-39213463 None:intergenic 20.0%
!!! GATTTTTTCTTTTGATAACA+TGG + Chr4:39211552-39211571 MsG0480020331.01.T01:CDS 20.0%
!!! TCTTTAAAAAATTGGGAAAA+GGG + Chr4:39210358-39210377 MsG0480020331.01.T01:intron 20.0%
!!! TTCTTTAAAAAATTGGGAAA+AGG + Chr4:39210357-39210376 MsG0480020331.01.T01:intron 20.0%
!!! TTTTGATAACATGGATAATA+GGG + Chr4:39211561-39211580 MsG0480020331.01.T01:CDS 20.0%
! AAGTGTAATATCTCAGAAAT+GGG + Chr4:39209588-39209607 MsG0480020331.01.T01:CDS 25.0%
! ACTATTGAACATATTGTTTG+GGG + Chr4:39210797-39210816 MsG0480020331.01.T01:CDS 25.0%
! ACTTCAATATGCAAAATAAC+TGG - Chr4:39209486-39209505 None:intergenic 25.0%
! AGAAGAAGATATTAGGAAAT+GGG - Chr4:39211485-39211504 None:intergenic 25.0%
! AGTGTAAAAAATCTTTACAC+CGG + Chr4:39210706-39210725 MsG0480020331.01.T01:intron 25.0%
! ATACATATCTATAAACCAGT+AGG + Chr4:39212868-39212887 MsG0480020331.01.T01:intron 25.0%
! ATACTTTCTATTGTGAATTG+GGG + Chr4:39212688-39212707 MsG0480020331.01.T01:intron 25.0%
! ATAGCATAAGATATAAGCTA+AGG + Chr4:39209322-39209341 MsG0480020331.01.T01:five_prime_UTR 25.0%
! ATCTCTTCTTAAAATGTAGA+AGG - Chr4:39213825-39213844 None:intergenic 25.0%
! CGTTAACACTTTCAAATTAT+TGG + Chr4:39213442-39213461 MsG0480020331.01.T01:intron 25.0%
! CTTATATCTTATGCTATCTA+TGG - Chr4:39209319-39209338 None:intergenic 25.0%
! CTTCAATATGCAAAATAACT+GGG - Chr4:39209485-39209504 None:intergenic 25.0%
! GAAAAATTGAAAAATACCAC+CGG + Chr4:39212174-39212193 MsG0480020331.01.T01:intron 25.0%
! GAATCATATCATTATCTGTT+TGG + Chr4:39213399-39213418 MsG0480020331.01.T01:intron 25.0%
! GACTATTTCAAATTTAGAGA+TGG + Chr4:39211268-39211287 MsG0480020331.01.T01:CDS 25.0%
! GCTTATTTGAGCTTATTTAT+TGG + Chr4:39213163-39213182 MsG0480020331.01.T01:intron 25.0%
! GGAACTATTAACAAACAAAA+TGG - Chr4:39213924-39213943 None:intergenic 25.0%
! GTCAAGTAAAACATGAAAAA+GGG - Chr4:39212118-39212137 None:intergenic 25.0%
! TAGAGAAAGAATGAAAATAG+TGG - Chr4:39209410-39209429 None:intergenic 25.0%
! TGTCAAGTAAAACATGAAAA+AGG - Chr4:39212119-39212138 None:intergenic 25.0%
!! AATGCTACTAATTTTACCAT+TGG - Chr4:39210032-39210051 None:intergenic 25.0%
!! CAACAATTTTGTTGCATAAT+TGG + Chr4:39211667-39211686 MsG0480020331.01.T01:intron 25.0%
!! CTTTAAAAAATTGGGAAAAG+GGG + Chr4:39210359-39210378 MsG0480020331.01.T01:intron 25.0%
!! GTGTTTTATGAGATTTTGTT+TGG + Chr4:39209711-39209730 MsG0480020331.01.T01:intron 25.0%
!! TTGTTTGTTAATAGTTCCAA+TGG + Chr4:39213926-39213945 MsG0480020331.01.T01:three_prime_UTR 25.0%
!! TTTGATAACATGGATAATAG+GGG + Chr4:39211562-39211581 MsG0480020331.01.T01:CDS 25.0%
!!! AATCAAATCAATGGACTAAA+AGG + Chr4:39212924-39212943 MsG0480020331.01.T01:intron 25.0%
!!! ATAACTGGAATTTGTTTCTA+AGG - Chr4:39210489-39210508 None:intergenic 25.0%
!!! CAATATTTTTCAGCAACATT+GGG + Chr4:39212580-39212599 MsG0480020331.01.T01:intron 25.0%
!!! CATATTTTTTTAAAAACCGG+TGG - Chr4:39212193-39212212 None:intergenic 25.0%
!!! CTTTTGATAACATGGATAAT+AGG + Chr4:39211560-39211579 MsG0480020331.01.T01:CDS 25.0%
!!! GCATAATTTGTTTTGAAGAA+TGG + Chr4:39211920-39211939 MsG0480020331.01.T01:intron 25.0%
!!! TCAATATTTTTCAGCAACAT+TGG + Chr4:39212579-39212598 MsG0480020331.01.T01:intron 25.0%
!!! TTTTAAGAAGAGATTGTTCA+TGG + Chr4:39213831-39213850 MsG0480020331.01.T01:three_prime_UTR 25.0%
AAACAGTAAGTTATATGCAG+TGG + Chr4:39211153-39211172 MsG0480020331.01.T01:intron 30.0%
AAACATGAAAAAGGGAAATG+CGG - Chr4:39212110-39212129 None:intergenic 30.0%
AAACCAGAGAAGAAGATATT+AGG - Chr4:39211492-39211511 None:intergenic 30.0%
AAATTGAATGTAGTTTCCGA+GGG + Chr4:39210938-39210957 MsG0480020331.01.T01:CDS 30.0%
AAGAGACAATAATTGTGAGA+CGG + Chr4:39210198-39210217 MsG0480020331.01.T01:intron 30.0%
AATTCGAAAATTGTAAGCGT+CGG + Chr4:39210965-39210984 MsG0480020331.01.T01:intron 30.0%
ACACTTTCAAATTATTGGGT+TGG + Chr4:39213447-39213466 MsG0480020331.01.T01:intron 30.0%
ACTGCATATAACTTACTGTT+TGG - Chr4:39211154-39211173 None:intergenic 30.0%
AGACCTCTTCAAATGATTTA+GGG + Chr4:39213125-39213144 MsG0480020331.01.T01:intron 30.0%
AGATCTTGTAACTAAATTGG+AGG - Chr4:39211075-39211094 None:intergenic 30.0%
ATAAGCATTTGTGAGACTTT+GGG + Chr4:39213187-39213206 MsG0480020331.01.T01:intron 30.0%
ATGTATGGTGAAGATTTCAA+GGG + Chr4:39211120-39211139 MsG0480020331.01.T01:CDS 30.0%
CCACTAACTGCAATTAATAA+GGG - Chr4:39210065-39210084 None:intergenic 30.0%
GAAGTGTAATATCTCAGAAA+TGG + Chr4:39209587-39209606 MsG0480020331.01.T01:CDS 30.0%
GACGATGTTCATGTAAATAT+AGG + Chr4:39212330-39212349 MsG0480020331.01.T01:three_prime_UTR 30.0%
GAGAAGAAGATATTAGGAAA+TGG - Chr4:39211486-39211505 None:intergenic 30.0%
GAGGTCTATAATTTATTGTC+TGG - Chr4:39213112-39213131 None:intergenic 30.0%
GCAACTAGCAAAAAATAATC+CGG - Chr4:39211781-39211800 None:intergenic 30.0%
GGAAAAAAGAAAAATCTTGC+AGG - Chr4:39213699-39213718 None:intergenic 30.0%
GGATAAAATTATGAACCTTG+TGG - Chr4:39211464-39211483 None:intergenic 30.0%
GTTGCTGAAAAATATTGAGT+AGG - Chr4:39212577-39212596 None:intergenic 30.0%
TAAAATACAGCTCTATGACA+TGG - Chr4:39211753-39211772 None:intergenic 30.0%
TAAATTGAATGTAGTTTCCG+AGG + Chr4:39210937-39210956 MsG0480020331.01.T01:CDS 30.0%
TACTTCTTTAATCCTATCAG+CGG - Chr4:39213559-39213578 None:intergenic 30.0%
TAGACCTCTTCAAATGATTT+AGG + Chr4:39213124-39213143 MsG0480020331.01.T01:intron 30.0%
TATAAGCATTTGTGAGACTT+TGG + Chr4:39213186-39213205 MsG0480020331.01.T01:intron 30.0%
TATGTATGGTGAAGATTTCA+AGG + Chr4:39211119-39211138 MsG0480020331.01.T01:CDS 30.0%
TATGTATGTTGCCAAATCAT+TGG - Chr4:39212855-39212874 None:intergenic 30.0%
TATTAATACCTACGACCATA+AGG - Chr4:39211391-39211410 None:intergenic 30.0%
TCAAAACAACGGATATACAT+TGG + Chr4:39212625-39212644 MsG0480020331.01.T01:three_prime_UTR 30.0%
TCAATTATTGGCAAAAGGAA+AGG - Chr4:39214001-39214020 None:intergenic 30.0%
TCCAATTTAGTTACAAGATC+TGG + Chr4:39211074-39211093 MsG0480020331.01.T01:intron 30.0%
TCCACTAACTGCAATTAATA+AGG - Chr4:39210066-39210085 None:intergenic 30.0%
TCCAGATCTTGTAACTAAAT+TGG - Chr4:39211078-39211097 None:intergenic 30.0%
TCTTCTTCTTCTTCTTCATA+AGG + Chr4:39209433-39209452 MsG0480020331.01.T01:five_prime_UTR 30.0%
TGCTTGTATTTGTTCATATC+AGG + Chr4:39212964-39212983 MsG0480020331.01.T01:intron 30.0%
TTACTTTCATAAAGCTCTTC+AGG + Chr4:39213228-39213247 MsG0480020331.01.T01:intron 30.0%
TTTATCCAAACATGGTCATA+TGG + Chr4:39213377-39213396 MsG0480020331.01.T01:intron 30.0%
TTTATGCAGAATCATGTTGA+AGG + Chr4:39212222-39212241 MsG0480020331.01.T01:intron 30.0%
TTTCCTAATATCTTCTTCTC+TGG + Chr4:39211486-39211505 MsG0480020331.01.T01:intron 30.0%
! AATTTTCGAATTACAACCCT+CGG - Chr4:39210957-39210976 None:intergenic 30.0%
! ATAGTGGAGTTTAAGAAAGA+TGG - Chr4:39209394-39209413 None:intergenic 30.0%
! CTATTCTTTGTTGCTTGAAA+GGG + Chr4:39213898-39213917 MsG0480020331.01.T01:three_prime_UTR 30.0%
! GAATAAGTGGATTTAGATCT+GGG + Chr4:39209797-39209816 MsG0480020331.01.T01:intron 30.0%
! GGATTAAAGAAGTACATAGA+AGG + Chr4:39213565-39213584 MsG0480020331.01.T01:three_prime_UTR 30.0%
! TCTATTCTTTGTTGCTTGAA+AGG + Chr4:39213897-39213916 MsG0480020331.01.T01:three_prime_UTR 30.0%
! TTCAAATTTAGAGATGGACT+TGG + Chr4:39211274-39211293 MsG0480020331.01.T01:CDS 30.0%
!! AGTGTAGTCATTTTGAATTC+GGG - Chr4:39211720-39211739 None:intergenic 30.0%
!! CAAATGATTTAGGGTCTTTT+TGG + Chr4:39213134-39213153 MsG0480020331.01.T01:intron 30.0%
!! CAGTGTAGTCATTTTGAATT+CGG - Chr4:39211721-39211740 None:intergenic 30.0%
!! GTATGCTATTTCCAATGATT+TGG + Chr4:39212841-39212860 MsG0480020331.01.T01:three_prime_UTR 30.0%
!! TTCAAATTATTGGGTTGGTT+TGG + Chr4:39213452-39213471 MsG0480020331.01.T01:intron 30.0%
!! TTTGTGTTGCTTCATTTGAT+TGG + Chr4:39213511-39213530 MsG0480020331.01.T01:three_prime_UTR 30.0%
AAAAAATACACTCCACCAAC+CGG - Chr4:39210537-39210556 None:intergenic 35.0%
AAACGACTAATATTGCGAGA+CGG - Chr4:39209964-39209983 None:intergenic 35.0%
AAAGAAAAATCTTGCAGGCT+TGG - Chr4:39213694-39213713 None:intergenic 35.0%
AACATGAAAAAGGGAAATGC+GGG - Chr4:39212109-39212128 None:intergenic 35.0%
AAGAAGCTAGAGGAAGAAAA+AGG + Chr4:39211593-39211612 MsG0480020331.01.T01:CDS 35.0%
AAGGCAGATCTACAAATAAC+TGG - Chr4:39210504-39210523 None:intergenic 35.0%
ACAGCACATTTGCATTAGTT+TGG - Chr4:39211225-39211244 None:intergenic 35.0%
AGACCCTAAATCATTTGAAG+AGG - Chr4:39213131-39213150 None:intergenic 35.0%
AGTTACAAGATCTGGAAATG+AGG + Chr4:39211082-39211101 MsG0480020331.01.T01:intron 35.0%
AGTTAGGAAGAACTCATCAA+AGG - Chr4:39213641-39213660 None:intergenic 35.0%
ATATTGTTTGGGGAATCAAG+TGG + Chr4:39210807-39210826 MsG0480020331.01.T01:CDS 35.0%
ATCTGCCTTCTTCTTTATTC+CGG + Chr4:39210515-39210534 MsG0480020331.01.T01:intron 35.0%
ATTGTCATGCGCTTTGTAAT+TGG + Chr4:39211617-39211636 MsG0480020331.01.T01:intron 35.0%
CCCTTATTAATTGCAGTTAG+TGG + Chr4:39210062-39210081 MsG0480020331.01.T01:intron 35.0%
CTCCTGTTTCAGAAGATATA+AGG + Chr4:39211336-39211355 MsG0480020331.01.T01:CDS 35.0%
CTCGCAATATTAGTCGTTTA+AGG + Chr4:39209965-39209984 MsG0480020331.01.T01:intron 35.0%
CTGATGTAGCACTAGTTAAA+AGG - Chr4:39211981-39212000 None:intergenic 35.0%
CTGTATTGAATGTAGAGCTT+TGG + Chr4:39211241-39211260 MsG0480020331.01.T01:intron 35.0%
CTTAAAATGTAGAAGGTCCA+TGG - Chr4:39213818-39213837 None:intergenic 35.0%
CTTGTTTGCAAGTATGGTAA+GGG - Chr4:39209276-39209295 None:intergenic 35.0%
GAGAAGGTGAAAATGCTTTA+TGG + Chr4:39213592-39213611 MsG0480020331.01.T01:three_prime_UTR 35.0%
GAGTAGGATATTCAGACAAA+AGG - Chr4:39212561-39212580 None:intergenic 35.0%
GGTAATAATCTTCCTGAGTT+AGG - Chr4:39213657-39213676 None:intergenic 35.0%
GTAAAAAATCTTTACACCGG+CGG + Chr4:39210709-39210728 MsG0480020331.01.T01:intron 35.0%
GTAAGAAGGTAAGAAGCTAA+TGG - Chr4:39212730-39212749 None:intergenic 35.0%
GTATCTTAGTAATTCCCCTA+GGG + Chr4:39214070-39214089 MsG0480020331.01.T01:three_prime_UTR 35.0%
GTCTGGAAATTATATTCACC+TGG - Chr4:39213095-39213114 None:intergenic 35.0%
TACATTGGATGCATGAAATC+TGG + Chr4:39212640-39212659 MsG0480020331.01.T01:three_prime_UTR 35.0%
TATCTTAGTAATTCCCCTAG+GGG + Chr4:39214071-39214090 MsG0480020331.01.T01:three_prime_UTR 35.0%
TCAATAGGAGCTTGGTTTAT+TGG + Chr4:39213020-39213039 MsG0480020331.01.T01:three_prime_UTR 35.0%
TCTTCATAAGTATGCCAATG+AGG + Chr4:39212992-39213011 MsG0480020331.01.T01:three_prime_UTR 35.0%
TGATTCCATATGACCATGTT+TGG - Chr4:39213385-39213404 None:intergenic 35.0%
TGGAAATTATATTCACCTGG+AGG - Chr4:39213092-39213111 None:intergenic 35.0%
TGTATCTTAGTAATTCCCCT+AGG + Chr4:39214069-39214088 MsG0480020331.01.T01:three_prime_UTR 35.0%
TTAATGACGTGGAAAAGTAG+AGG + Chr4:39209550-39209569 MsG0480020331.01.T01:exon 35.0%
TTGGACTTACGATTACATCA+TGG - Chr4:39211183-39211202 None:intergenic 35.0%
TTGTCTTTGCTGACAATTCA+AGG - Chr4:39212251-39212270 None:intergenic 35.0%
TTTAATGTAGTAGGACCTAC+TGG - Chr4:39212886-39212905 None:intergenic 35.0%
TTTACACATAAGCTGATGTG+AGG - Chr4:39212497-39212516 None:intergenic 35.0%
TTTGATTGTTGCTGACAAGT+TGG + Chr4:39212370-39212389 MsG0480020331.01.T01:intron 35.0%
! AAAGAAGTACATAGAAGGTG+TGG + Chr4:39213570-39213589 MsG0480020331.01.T01:three_prime_UTR 35.0%
! AGTTTGACTTTGTAACCTCA+AGG - Chr4:39210458-39210477 None:intergenic 35.0%
! GGAATAAGTGGATTTAGATC+TGG + Chr4:39209796-39209815 MsG0480020331.01.T01:intron 35.0%
! GTTTGACTTTGTAACCTCAA+GGG - Chr4:39210457-39210476 None:intergenic 35.0%
! TGGAGTATTCCTGAACAAAA+TGG + Chr4:39210884-39210903 MsG0480020331.01.T01:CDS 35.0%
! TGGATTTAGATCTGGGATTA+TGG + Chr4:39209804-39209823 MsG0480020331.01.T01:intron 35.0%
! TGTTCTTTTCTTGTGTCTGT+TGG + Chr4:39211049-39211068 MsG0480020331.01.T01:intron 35.0%
! TTTATGGAGTGCTTCTTTCT+AGG + Chr4:39213608-39213627 MsG0480020331.01.T01:three_prime_UTR 35.0%
! TTTTACACGCGAGAAAAAAC+TGG + Chr4:39213762-39213781 MsG0480020331.01.T01:three_prime_UTR 35.0%
!! CTTTTAACTAGTGCTACATC+AGG + Chr4:39211979-39211998 MsG0480020331.01.T01:intron 35.0%
!! GTCACTGTCATTGCTTTTAA+AGG + Chr4:39212152-39212171 MsG0480020331.01.T01:intron 35.0%
!! GTCCTTATATCTTCTGAAAC+AGG - Chr4:39211341-39211360 None:intergenic 35.0%
!! TTAGGCATCGATCAAAACAA+CGG + Chr4:39212614-39212633 MsG0480020331.01.T01:three_prime_UTR 35.0%
!! TTTAGGGTCTTTTTGGATTG+TGG + Chr4:39213141-39213160 MsG0480020331.01.T01:intron 35.0%
!!! AGAGCTGTATTTTAGTCTTC+CGG + Chr4:39211759-39211778 MsG0480020331.01.T01:intron 35.0%
!!! GCTGTTTTTGAAGTAAGAGA+GGG + Chr4:39210238-39210257 MsG0480020331.01.T01:intron 35.0%
!!! GTATTTCTCACTTTTGAGAC+AGG - Chr4:39212672-39212691 None:intergenic 35.0%
!!! TGCTGTTTTTGAAGTAAGAG+AGG + Chr4:39210237-39210256 MsG0480020331.01.T01:intron 35.0%
ACCAACCGGAATAAAGAAGA+AGG - Chr4:39210523-39210542 None:intergenic 40.0%
ACCTTCTTACTTTGTTGCAG+AGG + Chr4:39212740-39212759 MsG0480020331.01.T01:intron 40.0%
AGACAATAATTGTGAGACGG+AGG + Chr4:39210201-39210220 MsG0480020331.01.T01:intron 40.0%
AGATAGAGCTATTGAAGCAG+AGG + Chr4:39212011-39212030 MsG0480020331.01.T01:three_prime_UTR 40.0%
ATTTAAGTCACATACACCGC+CGG - Chr4:39210728-39210747 None:intergenic 40.0%
CAGTTAGTGGAGTAGTTAGT+TGG + Chr4:39210075-39210094 MsG0480020331.01.T01:intron 40.0%
CCTTCTTACTTTGTTGCAGA+GGG + Chr4:39212741-39212760 MsG0480020331.01.T01:intron 40.0%
CGCGAAACTAGAGATATGTA+TGG + Chr4:39211105-39211124 MsG0480020331.01.T01:CDS 40.0%
CTTCTTACTTTGTTGCAGAG+GGG + Chr4:39212742-39212761 MsG0480020331.01.T01:intron 40.0%
CTTTAGCAGCAGGAAAAGAA+GGG + Chr4:39211415-39211434 MsG0480020331.01.T01:CDS 40.0%
GACAATAATTGTGAGACGGA+GGG + Chr4:39210202-39210221 MsG0480020331.01.T01:intron 40.0%
GCTTGTTTGCAAGTATGGTA+AGG - Chr4:39209277-39209296 None:intergenic 40.0%
GGACAAAAGAAAGAAGCTAG+AGG + Chr4:39211583-39211602 MsG0480020331.01.T01:CDS 40.0%
GTGGAGTTTAAGAAAGATGG+TGG - Chr4:39209391-39209410 None:intergenic 40.0%
TCCTATTGACACATCCTCAT+TGG - Chr4:39213009-39213028 None:intergenic 40.0%
TGATGAGTTCTTCCTAACTC+AGG + Chr4:39213642-39213661 MsG0480020331.01.T01:three_prime_UTR 40.0%
TTAACTAGTGCTACATCAGG+AGG + Chr4:39211982-39212001 MsG0480020331.01.T01:intron 40.0%
TTAATACTGCCTTTAGCAGC+AGG + Chr4:39211405-39211424 MsG0480020331.01.T01:CDS 40.0%
TTCTTCTTTATTCCGGTTGG+TGG + Chr4:39210522-39210541 MsG0480020331.01.T01:intron 40.0%
TTGGTTTATTGGACTTGACG+TGG + Chr4:39213031-39213050 MsG0480020331.01.T01:three_prime_UTR 40.0%
! AGTCGGTATATTTTTCCCCT+AGG - Chr4:39214089-39214108 None:intergenic 40.0%
! CTATCTATGGGTGTTGTGTT+GGG - Chr4:39209306-39209325 None:intergenic 40.0%
! CTGCTTCAATAGCTCTATCT+AGG - Chr4:39212011-39212030 None:intergenic 40.0%
! CTTGCAAGTCCATTTTGTTC+AGG - Chr4:39210896-39210915 None:intergenic 40.0%
! GAAAGCATGGAGATTTCTTG+AGG + Chr4:39212037-39212056 MsG0480020331.01.T01:three_prime_UTR 40.0%
! GTCGGTATATTTTTCCCCTA+GGG - Chr4:39214088-39214107 None:intergenic 40.0%
! GTTTGGTTTCAGATTGCGAA+TGG + Chr4:39213469-39213488 MsG0480020331.01.T01:intron 40.0%
! TCATGGTTTGCAGCTAGATA+AGG + Chr4:39213848-39213867 MsG0480020331.01.T01:three_prime_UTR 40.0%
! TCGGTATATTTTTCCCCTAG+GGG - Chr4:39214087-39214106 None:intergenic 40.0%
!! AGAAAGTACCTTATGGTCGT+AGG + Chr4:39211380-39211399 MsG0480020331.01.T01:CDS 40.0%
!! GTGTAGCTTGTTTGCAAGTA+TGG - Chr4:39209282-39209301 None:intergenic 40.0%
!! GTTTCTTCATCCTGCTTTTG+AGG + Chr4:39211689-39211708 MsG0480020331.01.T01:intron 40.0%
!! TTACCAGTTTCTGAAGCTGT+CGG - Chr4:39210920-39210939 None:intergenic 40.0%
!!! TGGGCACTTTTTCTTTGTCT+CGG + Chr4:39209607-39209626 MsG0480020331.01.T01:CDS 40.0%
AAGAGAGAATGCTTGCTCCA+TGG + Chr4:39213798-39213817 MsG0480020331.01.T01:three_prime_UTR 45.0%
AATAGCATACAACTGCCCTG+TGG - Chr4:39212831-39212850 None:intergenic 45.0%
AATTTGAACTCCGTCCCTTG+AGG + Chr4:39210440-39210459 MsG0480020331.01.T01:intron 45.0%
ACGGAGTTCAAATTCTCTCG+GGG - Chr4:39210434-39210453 None:intergenic 45.0%
AGGATGTGTCAATAGGAGCT+TGG + Chr4:39213012-39213031 MsG0480020331.01.T01:three_prime_UTR 45.0%
AGGTTTGTGCGCGGTTATTA+AGG + Chr4:39209985-39210004 MsG0480020331.01.T01:intron 45.0%
CATTGGGAGAAACTCTCGTT+AGG + Chr4:39212596-39212615 MsG0480020331.01.T01:three_prime_UTR 45.0%
CCCTCTGCAACAAAGTAAGA+AGG - Chr4:39212744-39212763 None:intergenic 45.0%
CCTTTAGCAGCAGGAAAAGA+AGG + Chr4:39211414-39211433 MsG0480020331.01.T01:CDS 45.0%
CTGGAATGCTCTTCACTAAC+AGG + Chr4:39209641-39209660 MsG0480020331.01.T01:CDS 45.0%
GAATTTGTAGGTCCGCTGAT+AGG + Chr4:39213544-39213563 MsG0480020331.01.T01:three_prime_UTR 45.0%
GACGGAGTTCAAATTCTCTC+GGG - Chr4:39210435-39210454 None:intergenic 45.0%
GACTAATATTGCGAGACGGA+GGG - Chr4:39209960-39209979 None:intergenic 45.0%
GACTTTGTAACCTCAAGGGA+CGG - Chr4:39210453-39210472 None:intergenic 45.0%
GATGATCGAAGACTTTGCTG+TGG + Chr4:39213062-39213081 MsG0480020331.01.T01:three_prime_UTR 45.0%
GCCAATGAGGATGTGTCAAT+AGG + Chr4:39213005-39213024 MsG0480020331.01.T01:three_prime_UTR 45.0%
GCCTTCTTCTTTATTCCGGT+TGG + Chr4:39210519-39210538 MsG0480020331.01.T01:intron 45.0%
GGACGGAGTTCAAATTCTCT+CGG - Chr4:39210436-39210455 None:intergenic 45.0%
GGTTTCAGATTGCGAATGGA+AGG + Chr4:39213473-39213492 MsG0480020331.01.T01:intron 45.0%
GTTCAAGAGTCAGTACGAAG+TGG + Chr4:39211311-39211330 MsG0480020331.01.T01:CDS 45.0%
TACTTTGTTGCAGAGGGGTA+AGG + Chr4:39212747-39212766 MsG0480020331.01.T01:intron 45.0%
TATAAGGACGACTGAGTCGA+CGG + Chr4:39211352-39211371 MsG0480020331.01.T01:CDS 45.0%
TCATTTGATTGGAGCTGCAG+TGG + Chr4:39213522-39213541 MsG0480020331.01.T01:three_prime_UTR 45.0%
TGAAAAAGGGAAATGCGGGA+CGG - Chr4:39212105-39212124 None:intergenic 45.0%
TGCGCTTTGTAATTGGACAC+AGG + Chr4:39211624-39211643 MsG0480020331.01.T01:intron 45.0%
TGTTTGGGGAATCAAGTGGA+TGG + Chr4:39210811-39210830 MsG0480020331.01.T01:CDS 45.0%
TTATGAACCTTGTGGCAACC+AGG - Chr4:39211456-39211475 None:intergenic 45.0%
! AGTCGTTTAAGGTTTGTGCG+CGG + Chr4:39209976-39209995 MsG0480020331.01.T01:intron 45.0%
! CCTTCTTTTCCTGCTGCTAA+AGG - Chr4:39211417-39211436 None:intergenic 45.0%
! GCTATCTATGGGTGTTGTGT+TGG - Chr4:39209307-39209326 None:intergenic 45.0%
! GTACATAGAAGGTGTGGAGA+AGG + Chr4:39213576-39213595 MsG0480020331.01.T01:three_prime_UTR 45.0%
! TTGCAGGCTTGGTTTCTTTC+TGG - Chr4:39213683-39213702 None:intergenic 45.0%
!! GGGCAAGAGAAAGTACCTTA+TGG + Chr4:39211373-39211392 MsG0480020331.01.T01:CDS 45.0%
!!! TCTCACTTTTGAGACAGGAC+TGG - Chr4:39212667-39212686 None:intergenic 45.0%
!! AAATAAATGTATAATTAATT+TGG + Chr4:39211949-39211968 MsG0480020331.01.T01:intron 5.0%
ACTTCCAATGCTCGGGTTCA+TGG - Chr4:39212775-39212794 None:intergenic 50.0%
AGACCGACAGCTTCAGAAAC+TGG + Chr4:39210914-39210933 MsG0480020331.01.T01:CDS 50.0%
ATAAGGACGACTGAGTCGAC+GGG + Chr4:39211353-39211372 MsG0480020331.01.T01:CDS 50.0%
ATCCCATAAGCTCACAGCAG+TGG - Chr4:39212286-39212305 None:intergenic 50.0%
CAGCAGGAAAAGAAGGGACT+CGG + Chr4:39211421-39211440 MsG0480020331.01.T01:CDS 50.0%
CATTGGAAGTTTGGCGAGTC+TGG + Chr4:39212785-39212804 MsG0480020331.01.T01:three_prime_UTR 50.0%
CGACTAATATTGCGAGACGG+AGG - Chr4:39209961-39209980 None:intergenic 50.0%
CTCGCCAAACTTCCAATGCT+CGG - Chr4:39212783-39212802 None:intergenic 50.0%
GAAGCAGAGGACAGAAAGCA+TGG + Chr4:39212024-39212043 MsG0480020331.01.T01:three_prime_UTR 50.0%
GCAAGTATGGTAAGGGACGT+TGG - Chr4:39209269-39209288 None:intergenic 50.0%
GCATGGAGATTTCTTGAGGC+TGG + Chr4:39212041-39212060 MsG0480020331.01.T01:three_prime_UTR 50.0%
GGAGCTGCAGTGGAATTTGT+AGG + Chr4:39213532-39213551 MsG0480020331.01.T01:three_prime_UTR 50.0%
TCGCCAAACTTCCAATGCTC+GGG - Chr4:39212782-39212801 None:intergenic 50.0%
TGCCACTGCTGTGAGCTTAT+GGG + Chr4:39212281-39212300 MsG0480020331.01.T01:three_prime_UTR 50.0%
TGTCTCGGTAGTTTCTGTGC+TGG + Chr4:39209622-39209641 MsG0480020331.01.T01:CDS 50.0%
TTGCCACTGCTGTGAGCTTA+TGG + Chr4:39212280-39212299 MsG0480020331.01.T01:three_prime_UTR 50.0%
! GAAAAGAAGGGACTCGGTTC+GGG + Chr4:39211427-39211446 MsG0480020331.01.T01:intron 50.0%
! GGAAAAGAAGGGACTCGGTT+CGG + Chr4:39211426-39211445 MsG0480020331.01.T01:intron 50.0%
! GGAGCTTGATAGCTAGCCAT+TGG - Chr4:39213945-39213964 None:intergenic 50.0%
! GGCTTGGTTTCTTTCTGGAG+TGG - Chr4:39213678-39213697 None:intergenic 50.0%
!! GAACCCGAGCATTGGAAGTT+TGG + Chr4:39212776-39212795 MsG0480020331.01.T01:three_prime_UTR 50.0%
AAGTACTTCCGCCATGCCAC+AGG + Chr4:39212812-39212831 MsG0480020331.01.T01:three_prime_UTR 55.0%
AGTACTTCCGCCATGCCACA+GGG + Chr4:39212813-39212832 MsG0480020331.01.T01:three_prime_UTR 55.0%
CATACAACTGCCCTGTGGCA+TGG - Chr4:39212826-39212845 None:intergenic 55.0%
GGTACCATGAACCCGAGCAT+TGG + Chr4:39212768-39212787 MsG0480020331.01.T01:three_prime_UTR 55.0%
!! TCGGGTTGAGCCTCAAAAGC+AGG - Chr4:39211702-39211721 None:intergenic 55.0%
ACAACTGCCCTGTGGCATGG+CGG - Chr4:39212823-39212842 None:intergenic 60.0%
! AGATGGACTTGGCTGCTGCG+AGG + Chr4:39211285-39211304 MsG0480020331.01.T01:CDS 60.0%
! CTTTGCTGTGGCACTCCTCC+AGG + Chr4:39213074-39213093 MsG0480020331.01.T01:three_prime_UTR 60.0%
! GATGGACTTGGCTGCTGCGA+GGG + Chr4:39211286-39211305 MsG0480020331.01.T01:CDS 60.0%
! TGCGAATGGAAGGCGCAAGC+AGG + Chr4:39213483-39213502 MsG0480020331.01.T01:three_prime_UTR 60.0%
CGGGCTACCTGGTTGCCACA+AGG + Chr4:39211446-39211465 MsG0480020331.01.T01:intron 65.0%
!! GGGACTCGGTTCGGGCTACC+TGG + Chr4:39211435-39211454 MsG0480020331.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 39209253 39214116 39209253 ID=MsG0480020331.01;Name=MsG0480020331.01
Chr4 mRNA 39209253 39214116 39209253 ID=MsG0480020331.01.T01;Parent=MsG0480020331.01;Name=MsG0480020331.01.T01;_AED=0.30;_eAED=0.34;_QI=300|0.7|0.63|1|1|1|11|1141|214
Chr4 exon 39209253 39209662 39209253 ID=MsG0480020331.01.T01:exon:4711;Parent=MsG0480020331.01.T01
Chr4 exon 39210793 39210976 39210793 ID=MsG0480020331.01.T01:exon:4712;Parent=MsG0480020331.01.T01
Chr4 exon 39211084 39211157 39211084 ID=MsG0480020331.01.T01:exon:4713;Parent=MsG0480020331.01.T01
Chr4 exon 39211256 39211442 39211256 ID=MsG0480020331.01.T01:exon:4714;Parent=MsG0480020331.01.T01
Chr4 exon 39211544 39211631 39211544 ID=MsG0480020331.01.T01:exon:4715;Parent=MsG0480020331.01.T01
Chr4 exon 39212001 39212062 39212001 ID=MsG0480020331.01.T01:exon:4716;Parent=MsG0480020331.01.T01
Chr4 exon 39212231 39212351 39212231 ID=MsG0480020331.01.T01:exon:4717;Parent=MsG0480020331.01.T01
Chr4 exon 39212593 39212680 39212593 ID=MsG0480020331.01.T01:exon:4718;Parent=MsG0480020331.01.T01
Chr4 exon 39212760 39212885 39212760 ID=MsG0480020331.01.T01:exon:4719;Parent=MsG0480020331.01.T01
Chr4 exon 39212986 39213095 39212986 ID=MsG0480020331.01.T01:exon:4720;Parent=MsG0480020331.01.T01
Chr4 exon 39213481 39214116 39213481 ID=MsG0480020331.01.T01:exon:4721;Parent=MsG0480020331.01.T01
Chr4 five_prime_UTR 39209253 39209552 39209253 ID=MsG0480020331.01.T01:five_prime_utr;Parent=MsG0480020331.01.T01
Chr4 CDS 39209553 39209662 39209553 ID=MsG0480020331.01.T01:cds;Parent=MsG0480020331.01.T01
Chr4 CDS 39210793 39210976 39210793 ID=MsG0480020331.01.T01:cds;Parent=MsG0480020331.01.T01
Chr4 CDS 39211084 39211157 39211084 ID=MsG0480020331.01.T01:cds;Parent=MsG0480020331.01.T01
Chr4 CDS 39211256 39211442 39211256 ID=MsG0480020331.01.T01:cds;Parent=MsG0480020331.01.T01
Chr4 CDS 39211544 39211631 39211544 ID=MsG0480020331.01.T01:cds;Parent=MsG0480020331.01.T01
Chr4 CDS 39212001 39212002 39212001 ID=MsG0480020331.01.T01:cds;Parent=MsG0480020331.01.T01
Chr4 three_prime_UTR 39212003 39212062 39212003 ID=MsG0480020331.01.T01:three_prime_utr;Parent=MsG0480020331.01.T01
Chr4 three_prime_UTR 39212231 39212351 39212231 ID=MsG0480020331.01.T01:three_prime_utr;Parent=MsG0480020331.01.T01
Chr4 three_prime_UTR 39212593 39212680 39212593 ID=MsG0480020331.01.T01:three_prime_utr;Parent=MsG0480020331.01.T01
Chr4 three_prime_UTR 39212760 39212885 39212760 ID=MsG0480020331.01.T01:three_prime_utr;Parent=MsG0480020331.01.T01
Chr4 three_prime_UTR 39212986 39213095 39212986 ID=MsG0480020331.01.T01:three_prime_utr;Parent=MsG0480020331.01.T01
Chr4 three_prime_UTR 39213481 39214116 39213481 ID=MsG0480020331.01.T01:three_prime_utr;Parent=MsG0480020331.01.T01
Gene Sequence

>MsG0480020331.01.T01

ATGACGTGGAAAAGTAGAGGAGAATTTTCTTCAAGAAGTGTAATATCTCAGAAATGGGCACTTTTTCTTTGTCTCGGTAGTTTCTGTGCTGGAATGCTCTTCACTAACAGATTAACTATTGAACATATTGTTTGGGGAATCAAGTGGATGGTTATTGTGTTACTTTTTCTGATAAGAAATGTTAAATATCATAACAGGATATGGAGTATTCCTGAACAAAATGGACTTGCAAGACCGACAGCTTCAGAAACTGGTAAATTGAATGTAGTTTCCGAGGGTTGTAATTCGAAAATTTTACAAGATCTGGAAATGAGGCGCGAAACTAGAGATATGTATGGTGAAGATTTCAAGGGTCATAATTCCAAACAAGCTTTGGATAAGACTATTTCAAATTTAGAGATGGACTTGGCTGCTGCGAGGGCTGTTCAAGAGTCAGTACGAAGTGGTGCTCCTGTTTCAGAAGATATAAGGACGACTGAGTCGACGGGCAAGAGAAAGTACCTTATGGTCGTAGGTATTAATACTGCCTTTAGCAGCAGGAAAAGAAGGGACTCGTTCGTGATGATTTTTTCTTTTGATAACATGGATAATAGGGGACAAAAGAAAGAAGCTAGAGGAAGAAAAAGGCATTGTCATGCGCTTTGA

Protein sequence

>MsG0480020331.01.T01

MTWKSRGEFSSRSVISQKWALFLCLGSFCAGMLFTNRLTIEHIVWGIKWMVIVLLFLIRNVKYHNRIWSIPEQNGLARPTASETGKLNVVSEGCNSKILQDLEMRRETRDMYGEDFKGHNSKQALDKTISNLEMDLAAARAVQESVRSGAPVSEDIRTTESTGKRKYLMVVGINTAFSSRKRRDSFVMIFSFDNMDNRGQKKEARGRKRHCHAL*