AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005898.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005898.01.T01 MTR_1g109080 97.959 98 2 0 33 130 82 179 2.03e-62 198
MsG0180005898.01.T01 MTR_1g109080 98.387 62 1 0 168 229 282 343 1.08e-33 124
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005898.01.T01 AT2G01110 67.961 103 31 1 30 130 74 176 1.33e-42 147
MsG0180005898.01.T01 AT2G01110 82.258 62 11 0 168 229 279 340 1.28e-20 89.0

Find 56 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATTTCATGTGAAGTTTAA+AGG 0.195693 1:-97258823 MsG0180005898.01.T01:intron
CTTCTAGCAGCACCATTATT+AGG 0.229476 1:-97257251 MsG0180005898.01.T01:CDS
AGGAGTTGGAGGAAGCATTT+TGG 0.229964 1:-97259047 MsG0180005898.01.T01:CDS
GCCAAGGCCTGGTGGAATTT+AGG 0.240581 1:+97257027 None:intergenic
AGAATCTTTATATCAGTTCT+AGG 0.249354 1:-97259067 MsG0180005898.01.T01:CDS
TGCTTAAACTGAATTTCTTT+TGG 0.275876 1:+97257165 None:intergenic
TTCCACCAGGCCTTGGCATT+TGG 0.296857 1:-97257021 MsG0180005898.01.T01:three_prime_UTR
TAACTGCAACTATGTCAAAA+AGG 0.316412 1:+97256991 None:intergenic
GGACAACTTGGATTGGTTAC+TGG 0.331563 1:-97257368 MsG0180005898.01.T01:CDS
GCATGGATGGTCAAACTTGC+TGG 0.332429 1:-97257212 MsG0180005898.01.T01:CDS
TTTATATCAGTTCTAGGAGT+TGG 0.372808 1:-97259061 MsG0180005898.01.T01:CDS
TCCTAAATTCCACCAGGCCT+TGG 0.374237 1:-97257028 MsG0180005898.01.T01:three_prime_UTR
TTCTTTGTCGAAGCTCTTCA+AGG 0.382875 1:+97259086 None:intergenic
TACCGATTATACAACTCTAT+TGG 0.382896 1:-97257389 MsG0180005898.01.T01:CDS
ATGCTCATTTCTTTATCATC+TGG 0.385219 1:+97259118 None:intergenic
TCTGGAAGAAGCTCTTTATC+AGG 0.387524 1:+97259136 None:intergenic
CTCTATTGGACAACTTGGAT+TGG 0.425795 1:-97257375 MsG0180005898.01.T01:CDS
AAAGATATGCTTGATGGTAT+AGG 0.428767 1:-97259223 MsG0180005898.01.T01:CDS
GTCCAATAGAGTTGTATAAT+CGG 0.435552 1:+97257387 None:intergenic
TACAACTCTATTGGACAACT+TGG 0.436299 1:-97257380 MsG0180005898.01.T01:CDS
GACAATAAAGATATGCTTGA+TGG 0.441520 1:-97259229 MsG0180005898.01.T01:CDS
GTCTTTACCTAGGTGGTGCA+TGG 0.454573 1:-97257229 MsG0180005898.01.T01:CDS
AGATTTCTTCAGCTAGCTCC+TGG 0.459845 1:-97258959 MsG0180005898.01.T01:CDS
GAGACCGGATGCTATCAGTT+TGG 0.466801 1:-97257346 MsG0180005898.01.T01:CDS
CCTAGGTAAAGACCTAATAA+TGG 0.468369 1:+97257239 None:intergenic
CACCAGGCCTTGGCATTTGG+AGG 0.472494 1:-97257018 MsG0180005898.01.T01:three_prime_UTR
TAAATCAATTAATAGAATAC+AGG 0.474864 1:+97257076 None:intergenic
CTGACACCCTCTGATTGAAC+AGG 0.476792 1:+97258980 None:intergenic
TTACCTAGGTGGTGCATGGA+TGG 0.481523 1:-97257225 MsG0180005898.01.T01:CDS
ATATCAGTTCTAGGAGTTGG+AGG 0.501945 1:-97259058 MsG0180005898.01.T01:CDS
TACCTCCAAATGCCAAGGCC+TGG 0.522561 1:+97257016 None:intergenic
ACCTCCAAACTGATAGCATC+CGG 0.541278 1:+97257342 None:intergenic
ATACAGGAAGAGTAATGCTC+TGG 0.541662 1:+97257092 None:intergenic
TTGGATTGGTTACTGGAGAC+CGG 0.547880 1:-97257361 MsG0180005898.01.T01:CDS
TGGTATAGGTGAAGAAACAT+TGG 0.554885 1:-97259209 MsG0180005898.01.T01:CDS
TGAAGCTCCTGTTCAATCAG+AGG 0.565387 1:-97258987 MsG0180005898.01.T01:CDS
GTTTGGAGGTACGTTGTAGT+CGG 0.572084 1:-97257329 MsG0180005898.01.T01:CDS
CTCCAAATGCCAAGGCCTGG+TGG 0.584016 1:+97257019 None:intergenic
GAAAGATCAAAGTCTTTGTG+TGG 0.585311 1:-97258762 MsG0180005898.01.T01:CDS
GTTTAAAGGTGCTATACCGT+TGG 0.588320 1:-97258809 MsG0180005898.01.T01:CDS
ACCGGATGCTATCAGTTTGG+AGG 0.588400 1:-97257343 MsG0180005898.01.T01:CDS
GCTAGAAGAACTTGAGTGAG+AGG 0.588816 1:+97257266 None:intergenic
CGTTGTAGTCGGAGCAGTAG+TGG 0.590777 1:-97257318 MsG0180005898.01.T01:CDS
CATGGATGGTCAAACTTGCT+GGG 0.591514 1:-97257211 MsG0180005898.01.T01:CDS
AAGACTTTGATCTTTCACCC+TGG 0.602977 1:+97258769 None:intergenic
AGGAAGAGTAATGCTCTGGT+AGG 0.605861 1:+97257096 None:intergenic
CCATTATTAGGTCTTTACCT+AGG 0.610016 1:-97257239 MsG0180005898.01.T01:CDS
GAAGCTCCTGTTCAATCAGA+GGG 0.614527 1:-97258986 MsG0180005898.01.T01:CDS
AAAGATCAAAGTCTTTGTGT+GGG 0.620237 1:-97258761 MsG0180005898.01.T01:intron
TTATTAGGTCTTTACCTAGG+TGG 0.622151 1:-97257236 MsG0180005898.01.T01:CDS
AGTTATTCCTAAATTCCACC+AGG 0.623589 1:-97257034 MsG0180005898.01.T01:three_prime_UTR
AGGAATACCTCCAAATGCCA+AGG 0.623816 1:+97257011 None:intergenic
AACTTGAGTGAGAGGATCTG+TGG 0.626725 1:+97257274 None:intergenic
TGACCATCCATGCACCACCT+AGG 0.640535 1:+97257222 None:intergenic
AAACTCTGTCAAGTTGCCAA+CGG 0.663733 1:+97258793 None:intergenic
TGAGTGAGAGGATCTGTGGA+TGG 0.685947 1:+97257278 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATAAAAACAAAATAATTA+TGG + Chr1:97257583-97257602 None:intergenic 10.0%
!!! CATAATTATTTTGTTTTTAT+TGG - Chr1:97257581-97257600 MsG0180005898.01.T01:intron 10.0%
!!! TAATTATTTTGTTTTTATTG+GGG - Chr1:97257583-97257602 MsG0180005898.01.T01:intron 10.0%
!!! TTTTTTTAGTTACTATATAT+AGG + Chr1:97258638-97258657 None:intergenic 10.0%
!! TAAATCAATTAATAGAATAC+AGG + Chr1:97259222-97259241 None:intergenic 15.0%
!! TACATTCATAATTAATCATT+GGG - Chr1:97257719-97257738 MsG0180005898.01.T01:intron 15.0%
!! TGTATTCTATATTTATCATT+TGG + Chr1:97258316-97258335 None:intergenic 15.0%
!! TTACATTCATAATTAATCAT+TGG - Chr1:97257718-97257737 MsG0180005898.01.T01:intron 15.0%
!!! TAAAAAATTTACCTTTAAAG+TGG + Chr1:97257376-97257395 None:intergenic 15.0%
!! AAAATAATTATGGCAGAAAA+TGG + Chr1:97257573-97257592 None:intergenic 20.0%
!! ATAGTAACTAAAAAAAAGAC+TGG - Chr1:97258642-97258661 MsG0180005898.01.T01:intron 20.0%
!! TACCATATATTCAAAAAGAA+AGG + Chr1:97258245-97258264 None:intergenic 20.0%
!! TATATTTATCATTTGGTCAA+TGG + Chr1:97258309-97258328 None:intergenic 20.0%
!!! AAATTTGACTTCTCTAAAAT+AGG + Chr1:97257788-97257807 None:intergenic 20.0%
!!! AATTTCTTTTGGTAATATGT+GGG + Chr1:97259122-97259141 None:intergenic 20.0%
!!! AGAAACATTGGAAAATTTTA+AGG - Chr1:97257098-97257117 MsG0180005898.01.T01:three_prime_UTR 20.0%
!!! ATTTTAGAGAAGTCAAATTT+AGG - Chr1:97257788-97257807 MsG0180005898.01.T01:intron 20.0%
!!! ATTTTTATGTAAATTCACAC+AGG - Chr1:97259154-97259173 MsG0180005898.01.T01:CDS 20.0%
!!! TGATGTAATATTTTATTTCC+TGG - Chr1:97257446-97257465 MsG0180005898.01.T01:intron 20.0%
!!! TTCCTTTCTTTTTGAATATA+TGG - Chr1:97258240-97258259 MsG0180005898.01.T01:intron 20.0%
!!! TTTTTTACTCAAAATATCTC+CGG - Chr1:97257389-97257408 MsG0180005898.01.T01:CDS 20.0%
! AATTCCTAACAGAGATATAT+TGG + Chr1:97258404-97258423 None:intergenic 25.0%
! AGAATCTTTATATCAGTTCT+AGG - Chr1:97257228-97257247 MsG0180005898.01.T01:CDS 25.0%
! AGTTTGATCATGATTTAGAT+GGG + Chr1:97257883-97257902 None:intergenic 25.0%
! ATATTACTTGATATGAGACT+GGG + Chr1:97258537-97258556 None:intergenic 25.0%
! ATCAAACTAATATTGTTGTG+TGG - Chr1:97257895-97257914 MsG0180005898.01.T01:intron 25.0%
! ATGATTTCATAGAGAATGAT+AGG + Chr1:97257965-97257984 None:intergenic 25.0%
! ATTCCTAACAGAGATATATT+GGG + Chr1:97258403-97258422 None:intergenic 25.0%
! TAGTTTGATCATGATTTAGA+TGG + Chr1:97257884-97257903 None:intergenic 25.0%
! TATATTACTTGATATGAGAC+TGG + Chr1:97258538-97258557 None:intergenic 25.0%
!! ATTTTTCTTCACCACTTTAA+AGG - Chr1:97257362-97257381 MsG0180005898.01.T01:CDS 25.0%
!! CTTTGCATTTTCAAAAGATT+TGG - Chr1:97257275-97257294 MsG0180005898.01.T01:CDS 25.0%
!! TGCTTAAACTGAATTTCTTT+TGG + Chr1:97259133-97259152 None:intergenic 25.0%
!! TTTTTACTCAAAATATCTCC+GGG - Chr1:97257390-97257409 MsG0180005898.01.T01:CDS 25.0%
!!! AAACTCAAAGTATTGATCAA+TGG + Chr1:97258158-97258177 None:intergenic 25.0%
!!! CTTGAAAGTTTTAAATGACT+TGG - Chr1:97258563-97258582 MsG0180005898.01.T01:intron 25.0%
!!! GAATTTCTTTTGGTAATATG+TGG + Chr1:97259123-97259142 None:intergenic 25.0%
!!! TTGGAAAATTTTAAGGAAGA+TGG - Chr1:97257105-97257124 MsG0180005898.01.T01:three_prime_UTR 25.0%
AAAGATCAAAGTCTTTGTGT+GGG - Chr1:97257534-97257553 MsG0180005898.01.T01:intron 30.0%
AATGTTTGTAATCGATCATC+TGG - Chr1:97258485-97258504 MsG0180005898.01.T01:intron 30.0%
ATATTACATCACAACTCACT+AGG + Chr1:97257437-97257456 None:intergenic 30.0%
ATCATAGCCTTTATAATTCC+AGG - Chr1:97257980-97257999 MsG0180005898.01.T01:intron 30.0%
ATGCTCATTTCTTTATCATC+TGG + Chr1:97257180-97257199 None:intergenic 30.0%
GACAATAAAGATATGCTTGA+TGG - Chr1:97257066-97257085 MsG0180005898.01.T01:three_prime_UTR 30.0%
GCATTTCATGTGAAGTTTAA+AGG - Chr1:97257472-97257491 MsG0180005898.01.T01:intron 30.0%
GTAATGGTTATATCACACAA+AGG + Chr1:97257850-97257869 None:intergenic 30.0%
GTCCAATAGAGTTGTATAAT+CGG + Chr1:97258911-97258930 None:intergenic 30.0%
TAGAGAAGTCAAATTTAGGA+GGG - Chr1:97257792-97257811 MsG0180005898.01.T01:intron 30.0%
TATCCCAATATATCTCTGTT+AGG - Chr1:97258397-97258416 MsG0180005898.01.T01:intron 30.0%
TATTACTTGATATGAGACTG+GGG + Chr1:97258536-97258555 None:intergenic 30.0%
TGACAAAGAATTTAATGCTG+CGG + Chr1:97258102-97258121 None:intergenic 30.0%
TGTGATATAACCATTACTGT+AGG - Chr1:97257853-97257872 MsG0180005898.01.T01:intron 30.0%
TTAGAGAAGTCAAATTTAGG+AGG - Chr1:97257791-97257810 MsG0180005898.01.T01:intron 30.0%
TTCTTTGTCAATTATGCTGA+AGG - Chr1:97258112-97258131 MsG0180005898.01.T01:intron 30.0%
! AAAAGAAAGGAAGTACAAAC+AGG + Chr1:97258232-97258251 None:intergenic 30.0%
! AAAGATATGCTTGATGGTAT+AGG - Chr1:97257072-97257091 MsG0180005898.01.T01:three_prime_UTR 30.0%
! AAGCTGAAAGAAGGTTTTTA+GGG - Chr1:97258010-97258029 MsG0180005898.01.T01:intron 30.0%
! TACCGATTATACAACTCTAT+TGG - Chr1:97258906-97258925 MsG0180005898.01.T01:CDS 30.0%
! TCAATACTTTGAGTTTGTTC+TGG - Chr1:97258162-97258181 MsG0180005898.01.T01:intron 30.0%
! TCTAAAATAGGTAGTTGGTA+AGG + Chr1:97257776-97257795 None:intergenic 30.0%
! TTTTACTCAAAATATCTCCG+GGG - Chr1:97257391-97257410 MsG0180005898.01.T01:CDS 30.0%
!! ACTTCTCTAAAATAGGTAGT+TGG + Chr1:97257781-97257800 None:intergenic 30.0%
!! TTTATATCAGTTCTAGGAGT+TGG - Chr1:97257234-97257253 MsG0180005898.01.T01:CDS 30.0%
!!! CATTTTCAAAAGATTTGGTG+AGG - Chr1:97257280-97257299 MsG0180005898.01.T01:CDS 30.0%
!!! TTTTTAGGGCCAATTGTTTT+AGG - Chr1:97258024-97258043 MsG0180005898.01.T01:intron 30.0%
AAACAGGAAGAAGAATTACC+TGG + Chr1:97258216-97258235 None:intergenic 35.0%
ACTGATGAGCCTAAAACAAT+TGG + Chr1:97258036-97258055 None:intergenic 35.0%
AGTTATTCCTAAATTCCACC+AGG - Chr1:97259261-97259280 MsG0180005898.01.T01:CDS 35.0%
ATTACTTGATATGAGACTGG+GGG + Chr1:97258535-97258554 None:intergenic 35.0%
ATTGCAGTATTGCTATGAGT+TGG - Chr1:97258442-97258461 MsG0180005898.01.T01:intron 35.0%
CCATTATTAGGTCTTTACCT+AGG - Chr1:97259056-97259075 MsG0180005898.01.T01:CDS 35.0%
CCTAGGTAAAGACCTAATAA+TGG + Chr1:97259059-97259078 None:intergenic 35.0%
CGTTAGACCTGGAATTATAA+AGG + Chr1:97257990-97258009 None:intergenic 35.0%
CTAAGCCATCTTGTATTTGT+AGG - Chr1:97258883-97258902 MsG0180005898.01.T01:intron 35.0%
CTGGATATTGTTCTCTCTTT+GGG - Chr1:97257935-97257954 MsG0180005898.01.T01:intron 35.0%
GAAAGATCAAAGTCTTTGTG+TGG - Chr1:97257533-97257552 MsG0180005898.01.T01:intron 35.0%
GACAAAGAATTTAATGCTGC+GGG + Chr1:97258101-97258120 None:intergenic 35.0%
GGTTATATCACACAAAGGTT+GGG + Chr1:97257845-97257864 None:intergenic 35.0%
TACAACTCTATTGGACAACT+TGG - Chr1:97258915-97258934 MsG0180005898.01.T01:CDS 35.0%
TAGATCCATTACAACCAACT+AGG + Chr1:97258866-97258885 None:intergenic 35.0%
TCTGGATATTGTTCTCTCTT+TGG - Chr1:97257934-97257953 MsG0180005898.01.T01:intron 35.0%
TGGTAAGGTGAGAAAATCAA+AGG + Chr1:97257761-97257780 None:intergenic 35.0%
TGGTATAGGTGAAGAAACAT+TGG - Chr1:97257086-97257105 MsG0180005898.01.T01:three_prime_UTR 35.0%
TGGTTATATCACACAAAGGT+TGG + Chr1:97257846-97257865 None:intergenic 35.0%
TGTAATCGATCATCTGGATT+GGG - Chr1:97258491-97258510 MsG0180005898.01.T01:intron 35.0%
TTATTAGGTCTTTACCTAGG+TGG - Chr1:97259059-97259078 MsG0180005898.01.T01:CDS 35.0%
TTCTTCCTAGTTGGTTGTAA+TGG - Chr1:97258858-97258877 MsG0180005898.01.T01:intron 35.0%
TTGTAATCGATCATCTGGAT+TGG - Chr1:97258490-97258509 MsG0180005898.01.T01:intron 35.0%
! ACGTAGATTTTACCTTGATG+TGG - Chr1:97258760-97258779 MsG0180005898.01.T01:intron 35.0%
! GAAGCTGAAAGAAGGTTTTT+AGG - Chr1:97258009-97258028 MsG0180005898.01.T01:intron 35.0%
! TGCTTTCTTTTCTTCCTAGT+TGG - Chr1:97258849-97258868 MsG0180005898.01.T01:intron 35.0%
!! TTATCACGTTCTTTGGAGTT+TGG - Chr1:97258718-97258737 MsG0180005898.01.T01:intron 35.0%
AAGACTTTGATCTTTCACCC+TGG + Chr1:97257529-97257548 None:intergenic 40.0%
ACATCACAACTCACTAGGTA+GGG + Chr1:97257432-97257451 None:intergenic 40.0%
AGGCAACTCACTCTAAATTG+AGG - Chr1:97257626-97257645 MsG0180005898.01.T01:intron 40.0%
ATACAGGAAGAGTAATGCTC+TGG + Chr1:97259206-97259225 None:intergenic 40.0%
CAAGTAGGAGAAGGTTATTC+CGG + Chr1:97258069-97258088 None:intergenic 40.0%
CGATCCAGCTACTCTTAAAT+AGG - Chr1:97257606-97257625 MsG0180005898.01.T01:intron 40.0%
CGGTACCTACAAATACAAGA+TGG + Chr1:97258891-97258910 None:intergenic 40.0%
CTCTATTGGACAACTTGGAT+TGG - Chr1:97258920-97258939 MsG0180005898.01.T01:CDS 40.0%
CTTCTAGCAGCACCATTATT+AGG - Chr1:97259044-97259063 MsG0180005898.01.T01:CDS 40.0%
GATGGGTATACCTACAGTAA+TGG + Chr1:97257866-97257885 None:intergenic 40.0%
GTGGTGAAGAAAAATTCACC+AGG + Chr1:97257357-97257376 None:intergenic 40.0%
GTTGCCTATTTAAGAGTAGC+TGG + Chr1:97257613-97257632 None:intergenic 40.0%
TACATCACAACTCACTAGGT+AGG + Chr1:97257433-97257452 None:intergenic 40.0%
TCTGGAAGAAGCTCTTTATC+AGG + Chr1:97257162-97257181 None:intergenic 40.0%
TGAGTGCTTATCACGTTCTT+TGG - Chr1:97258711-97258730 MsG0180005898.01.T01:intron 40.0%
TTACCTTGATGTGGTTCTTG+AGG - Chr1:97258769-97258788 MsG0180005898.01.T01:CDS 40.0%
TTCTTTGTCGAAGCTCTTCA+AGG + Chr1:97257212-97257231 None:intergenic 40.0%
TTGGGATATACGAATTGACC+TGG + Chr1:97258385-97258404 None:intergenic 40.0%
TTTCCTCAAGAACCACATCA+AGG + Chr1:97258775-97258794 None:intergenic 40.0%
TTTCTCACTGTCGAACAATG+TGG - Chr1:97258602-97258621 MsG0180005898.01.T01:intron 40.0%
! AAACTCTGTCAAGTTGCCAA+CGG + Chr1:97257505-97257524 None:intergenic 40.0%
! CAACTTGACAGAGTTTTCCA+GGG - Chr1:97257509-97257528 MsG0180005898.01.T01:intron 40.0%
! CTGGTTCTTATGTTCAGTAC+AGG - Chr1:97258181-97258200 MsG0180005898.01.T01:intron 40.0%
!! ATATCAGTTCTAGGAGTTGG+AGG - Chr1:97257237-97257256 MsG0180005898.01.T01:CDS 40.0%
!! GTTTAAAGGTGCTATACCGT+TGG - Chr1:97257486-97257505 MsG0180005898.01.T01:intron 40.0%
AACCTTCTCCTACTTGGTTC+TGG - Chr1:97258073-97258092 MsG0180005898.01.T01:intron 45.0%
AACTTGAGTGAGAGGATCTG+TGG + Chr1:97259024-97259043 None:intergenic 45.0%
AATATTGTTGTGTGGTCCCG+TGG - Chr1:97257903-97257922 MsG0180005898.01.T01:intron 45.0%
ACCTCCAAACTGATAGCATC+CGG + Chr1:97258956-97258975 None:intergenic 45.0%
AGATTTCTTCAGCTAGCTCC+TGG - Chr1:97257336-97257355 MsG0180005898.01.T01:CDS 45.0%
AGGAAGAGTAATGCTCTGGT+AGG + Chr1:97259202-97259221 None:intergenic 45.0%
AGGAATACCTCCAAATGCCA+AGG + Chr1:97259287-97259306 None:intergenic 45.0%
ATATCCAGAAACCTGCACCA+CGG + Chr1:97257923-97257942 None:intergenic 45.0%
CGGAATAACCTTCTCCTACT+TGG - Chr1:97258067-97258086 MsG0180005898.01.T01:intron 45.0%
CTCATCAGTTCTTTCTACGC+CGG - Chr1:97258047-97258066 MsG0180005898.01.T01:intron 45.0%
CTTCACATGAAATGCATGCC+AGG + Chr1:97257467-97257486 None:intergenic 45.0%
GAAGCTCCTGTTCAATCAGA+GGG - Chr1:97257309-97257328 MsG0180005898.01.T01:CDS 45.0%
GATATACGAATTGACCTGGC+AGG + Chr1:97258381-97258400 None:intergenic 45.0%
GATTGGGACATGGGTATAAC+GGG - Chr1:97258507-97258526 MsG0180005898.01.T01:intron 45.0%
GCTAGAAGAACTTGAGTGAG+AGG + Chr1:97259032-97259051 None:intergenic 45.0%
GGAAGGAAGTAAAAACACCC+CGG + Chr1:97257411-97257430 None:intergenic 45.0%
GGATTGGGACATGGGTATAA+CGG - Chr1:97258506-97258525 MsG0180005898.01.T01:intron 45.0%
GGTCTAACGAAGCTGAAAGA+AGG - Chr1:97258001-97258020 MsG0180005898.01.T01:intron 45.0%
GTCGTGTGGCAAGTATCAAT+CGG + Chr1:97258287-97258306 None:intergenic 45.0%
TACCAGAACCAAGTAGGAGA+AGG + Chr1:97258078-97258097 None:intergenic 45.0%
TCATTTGGTCAATGGTCGTG+TGG + Chr1:97258301-97258320 None:intergenic 45.0%
TCTTTCAGCTTCGTTAGACC+TGG + Chr1:97258001-97258020 None:intergenic 45.0%
TGAAGCTCCTGTTCAATCAG+AGG - Chr1:97257308-97257327 MsG0180005898.01.T01:CDS 45.0%
! CATGGATGGTCAAACTTGCT+GGG - Chr1:97259084-97259103 MsG0180005898.01.T01:CDS 45.0%
! GATCATCTGGATTGGGACAT+GGG - Chr1:97258498-97258517 MsG0180005898.01.T01:intron 45.0%
! GCAACTTGACAGAGTTTTCC+AGG - Chr1:97257508-97257527 MsG0180005898.01.T01:intron 45.0%
! GTTTGGAGGTACGTTGTAGT+CGG - Chr1:97258966-97258985 MsG0180005898.01.T01:CDS 45.0%
!! AAGGTGCTGTTGAATCACTG+TGG - Chr1:97258131-97258150 MsG0180005898.01.T01:intron 45.0%
!! CATTTTTAAGCATGCCTGCC+AGG - Chr1:97258364-97258383 MsG0180005898.01.T01:intron 45.0%
!! GGACAACTTGGATTGGTTAC+TGG - Chr1:97258927-97258946 MsG0180005898.01.T01:CDS 45.0%
!! TTGGATTGGTTACTGGAGAC+CGG - Chr1:97258934-97258953 MsG0180005898.01.T01:CDS 45.0%
!!! AGGAGTTGGAGGAAGCATTT+TGG - Chr1:97257248-97257267 MsG0180005898.01.T01:CDS 45.0%
!!! GGAGTTGGAGGAAGCATTTT+GGG - Chr1:97257249-97257268 MsG0180005898.01.T01:CDS 45.0%
!!! ATAATTATTTTGTTTTTATT+GGG - Chr1:97257582-97257601 MsG0180005898.01.T01:intron 5.0%
ACCGGATGCTATCAGTTTGG+AGG - Chr1:97258952-97258971 MsG0180005898.01.T01:CDS 50.0%
CACAACTCACTAGGTAGGGA+AGG + Chr1:97257428-97257447 None:intergenic 50.0%
CAGTACAGGCTTGTCTTTCC+AGG - Chr1:97258195-97258214 MsG0180005898.01.T01:intron 50.0%
CCCTAAAAGCCAGCTCTCAA+GGG + Chr1:97258675-97258694 None:intergenic 50.0%
CTGACACCCTCTGATTGAAC+AGG + Chr1:97257318-97257337 None:intergenic 50.0%
GAGACCGGATGCTATCAGTT+TGG - Chr1:97258949-97258968 MsG0180005898.01.T01:CDS 50.0%
GCATGGATGGTCAAACTTGC+TGG - Chr1:97259083-97259102 MsG0180005898.01.T01:CDS 50.0%
GTCTTTACCTAGGTGGTGCA+TGG - Chr1:97259066-97259085 MsG0180005898.01.T01:CDS 50.0%
TATCCAGAAACCTGCACCAC+GGG + Chr1:97257922-97257941 None:intergenic 50.0%
TCCCTAAAAGCCAGCTCTCA+AGG + Chr1:97258676-97258695 None:intergenic 50.0%
TCCTAAATTCCACCAGGCCT+TGG - Chr1:97259267-97259286 MsG0180005898.01.T01:CDS 50.0%
TGAGTGAGAGGATCTGTGGA+TGG + Chr1:97259020-97259039 None:intergenic 50.0%
TTACCTAGGTGGTGCATGGA+TGG - Chr1:97259070-97259089 MsG0180005898.01.T01:CDS 50.0%
! CGATCATCTGGATTGGGACA+TGG - Chr1:97258497-97258516 MsG0180005898.01.T01:intron 50.0%
!!! CCCTTGAGAGCTGGCTTTTA+GGG - Chr1:97258672-97258691 MsG0180005898.01.T01:intron 50.0%
!!! TCCCTTGAGAGCTGGCTTTT+AGG - Chr1:97258671-97258690 MsG0180005898.01.T01:intron 50.0%
CGTTGTAGTCGGAGCAGTAG+TGG - Chr1:97258977-97258996 MsG0180005898.01.T01:CDS 55.0%
GCCAAGGCCTGGTGGAATTT+AGG + Chr1:97259271-97259290 None:intergenic 55.0%
GGTTCTTCTCCCTTGAGAGC+TGG - Chr1:97258663-97258682 MsG0180005898.01.T01:intron 55.0%
TACCTCCAAATGCCAAGGCC+TGG + Chr1:97259282-97259301 None:intergenic 55.0%
TGACCATCCATGCACCACCT+AGG + Chr1:97259076-97259095 None:intergenic 55.0%
TGCGGGTACCAGAACCAAGT+AGG + Chr1:97258084-97258103 None:intergenic 55.0%
TTCCACCAGGCCTTGGCATT+TGG - Chr1:97259274-97259293 MsG0180005898.01.T01:CDS 55.0%
CACCAGGCCTTGGCATTTGG+AGG - Chr1:97259277-97259296 MsG0180005898.01.T01:CDS 60.0%
CTCCAAATGCCAAGGCCTGG+TGG + Chr1:97259279-97259298 None:intergenic 60.0%
GGTCCCGTGGTGCAGGTTTC+TGG - Chr1:97257916-97257935 MsG0180005898.01.T01:intron 65.0%
GTTGTGTGGTCCCGTGGTGC+AGG - Chr1:97257909-97257928 MsG0180005898.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 97257000 97259317 97257000 ID=MsG0180005898.01;Name=MsG0180005898.01
Chr1 mRNA 97257000 97259317 97257000 ID=MsG0180005898.01.T01;Parent=MsG0180005898.01;Name=MsG0180005898.01.T01;_AED=0.37;_eAED=0.47;_QI=0|0|0.33|1|0.5|0.33|3|205|229
Chr1 exon 97257000 97257412 97257000 ID=MsG0180005898.01.T01:exon:50659;Parent=MsG0180005898.01.T01
Chr1 exon 97258762 97258830 97258762 ID=MsG0180005898.01.T01:exon:50658;Parent=MsG0180005898.01.T01
Chr1 exon 97258905 97259317 97258905 ID=MsG0180005898.01.T01:exon:50657;Parent=MsG0180005898.01.T01
Chr1 CDS 97258905 97259317 97258905 ID=MsG0180005898.01.T01:cds;Parent=MsG0180005898.01.T01
Chr1 CDS 97258762 97258830 97258762 ID=MsG0180005898.01.T01:cds;Parent=MsG0180005898.01.T01
Chr1 CDS 97257205 97257412 97257205 ID=MsG0180005898.01.T01:cds;Parent=MsG0180005898.01.T01
Chr1 three_prime_UTR 97257000 97257204 97257000 ID=MsG0180005898.01.T01:three_prime_utr;Parent=MsG0180005898.01.T01
Gene Sequence

>MsG0180005898.01.T01

ATGATTATGCATGCAAAAGTTTTAGAAATAGAAACTCTTACTGAATTAACTTTCTATTGTTGTGTTGACAATAAAGATATGCTTGATGGTATAGGTGAAGAAACATTGGAAAATTTTAAGGAAGATGGAGAAAGAAGTGCTATCTATGATTTTCTTTATCCTGATAAAGAGCTTCTTCCAGATGATAAAGAAATGAGCATATTTGATCACCTTGAAGAGCTTCGACAAAGAATCTTTATATCAGTTCTAGGAGTTGGAGGAAGCATTTTGGGATGCTTTGCATTTTCAAAAGATTTGGTGAGGCTTCTTGAAGCTCCTGTTCAATCAGAGGGTGTCAGATTTCTTCAGCTAGCTCCTGGTGAATTTTTCTTCACCACTTTAAAGGTAAATTTTTTACTCAAAATATCTCCGGGTTTAAAGGTGCTATACCGTTGGCAACTTGACAGAGTTTTCCAGGGTGAAAGATCAAAGTCTTTGTGTGGGTACCGATTATACAACTCTATTGGACAACTTGGATTGGTTACTGGAGACCGGATGCTATCAGTTTGGAGGTACGTTGTAGTCGGAGCAGTAGTGGCAGCTGCTATAGTTACGCCATCCACAGATCCTCTCACTCAAGTTCTTCTAGCAGCACCATTATTAGGTCTTTACCTAGGTGGTGCATGGATGGTCAAACTTGCTGGGCGTTAA

Protein sequence

>MsG0180005898.01.T01

MIMHAKVLEIETLTELTFYCCVDNKDMLDGIGEETLENFKEDGERSAIYDFLYPDKELLPDDKEMSIFDHLEELRQRIFISVLGVGGSILGCFAFSKDLVRLLEAPVQSEGVRFLQLAPGEFFFTTLKVNFLLKISPGLKVLYRWQLDRVFQGERSKSLCGYRLYNSIGQLGLVTGDRMLSVWRYVVVGAVVAAAIVTPSTDPLTQVLLAAPLLGLYLGGAWMVKLAGR*