AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005977.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005977.01.T01 MTR_1g111090 66.027 365 61 4 21 324 35 397 2.04e-112 332
MsG0180005977.01.T01 MTR_7g407040 41.954 348 145 12 21 323 35 370 1.90e-59 195
MsG0180005977.01.T01 MTR_2g105410 36.628 344 165 12 21 323 35 366 2.89e-48 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005977.01.T01 AT3G02540 46.819 393 110 13 21 323 35 418 1.19e-84 261
MsG0180005977.01.T01 AT3G02540 47.208 394 108 14 21 323 35 419 1.32e-84 261
MsG0180005977.01.T01 AT5G38470 44.571 350 135 10 25 324 38 378 7.04e-71 225
MsG0180005977.01.T01 AT1G79650 37.288 354 164 13 13 323 27 365 5.89e-54 181
MsG0180005977.01.T01 AT1G79650 37.853 354 168 13 13 323 27 371 3.20e-53 179
MsG0180005977.01.T01 AT1G16190 37.394 353 148 12 23 323 14 345 7.99e-52 174
MsG0180005977.01.T01 AT1G79650 37.288 354 150 13 13 323 27 351 8.80e-52 174
MsG0180005977.01.T01 AT1G16190 37.394 353 148 12 23 323 37 368 1.72e-51 174
MsG0180005977.01.T01 AT1G79650 35.200 375 173 14 13 323 27 395 1.06e-49 170
MsG0180005977.01.T01 AT3G02540 41.111 270 66 10 21 202 35 299 1.36e-31 120
MsG0180005977.01.T01 AT5G38470 37.809 283 119 9 25 257 38 313 2.12e-27 109
MsG0180005977.01.T01 AT5G16090 41.818 110 57 3 214 319 65 171 6.03e-17 77.8

Find 122 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTAGCAGTTGCCGAGGATA+TGG 0.229870 1:-98388101 None:intergenic
CCTCCATAGGTTCGTTAATC+AGG 0.298756 1:-98389219 None:intergenic
AGTGGGTAAAATTACGGATT+TGG 0.299531 1:-98385868 None:intergenic
ACTCATGCATGTGGTCTAAA+AGG 0.325713 1:-98389950 None:intergenic
AGGGAAGGTTCTGATGTCTA+TGG 0.340684 1:+98388259 MsG0180005977.01.T01:intron
ATGCTTTAGGAACAACCTAT+TGG 0.341168 1:+98389380 MsG0180005977.01.T01:intron
TTCACAGGTTGTGCACTTGC+AGG 0.353383 1:-98388663 None:intergenic
TGCTTTAGGAACAACCTATT+GGG 0.371188 1:+98389381 MsG0180005977.01.T01:intron
GTCAAATTACGCTTGTTAGA+AGG 0.372977 1:-98390231 None:intergenic
ATGGGAGCAGGAGCTGGAGC+TGG 0.379649 1:-98388082 None:intergenic
GGAGCTGCAGCTGCAGCCTC+AGG 0.380645 1:-98388687 None:intergenic
GCTGCAGCAATAACAGAATC+AGG 0.385243 1:-98389121 None:intergenic
TTCAATAGCTTGGCGCTCCT+CGG 0.390524 1:-98389445 None:intergenic
GAAGAAACCTGCAATATTTG+TGG 0.396932 1:-98389055 None:intergenic
GGCTGCATCTAATCTGTTGC+CGG 0.406929 1:+98388285 MsG0180005977.01.T01:CDS
GAGGATATGGGAGCAGGAGC+TGG 0.408313 1:-98388088 None:intergenic
TGAGATTGATTCGGATCATC+AGG 0.419524 1:+98389183 MsG0180005977.01.T01:CDS
AGGCAATCCACAAATATTGC+AGG 0.426414 1:+98389048 MsG0180005977.01.T01:CDS
GCCTACCTTGGATTTCACTT+GGG 0.429753 1:+98390283 MsG0180005977.01.T01:three_prime_UTR
TGTCTTATATTCTCTTCTTG+TGG 0.430263 1:+98389093 MsG0180005977.01.T01:CDS
CTTATACTTGGTGTTAAATG+AGG 0.430469 1:+98390052 MsG0180005977.01.T01:three_prime_UTR
AGGTCTAGAGGATTAGCATT+AGG 0.432634 1:-98388747 None:intergenic
TTAGGTCCACTTGAGGTAAC+AGG 0.432965 1:-98388729 None:intergenic
CCAAGTATAAGAAATTTAAA+AGG 0.434631 1:-98390040 None:intergenic
CAGCAGCCATCTGTCCCAAT+AGG 0.439096 1:-98389395 None:intergenic
CACGGTGCCGCAGTTGCAGC+AGG 0.444802 1:-98387919 None:intergenic
GCACCATAGCTCGCAATGCT+TGG 0.445098 1:-98389025 None:intergenic
TGCTGGAGATTCAGCTTGTC+GGG 0.448791 1:-98388628 None:intergenic
TTTGCCAAGCTCTTGTAGCA+TGG 0.451224 1:-98389144 None:intergenic
TGGGAGCAGGAGCTGGAGCT+GGG 0.454567 1:-98388081 None:intergenic
CATTGTGATCATGCTTTCAA+AGG 0.464553 1:+98387266 MsG0180005977.01.T01:CDS
AACTTACACGTTCAATAGCT+TGG 0.465361 1:-98389455 None:intergenic
CTTATTGCAGCTTGAAGCAA+TGG 0.466176 1:+98389857 MsG0180005977.01.T01:intron
TCAATAGCTTGGCGCTCCTC+GGG 0.468475 1:-98389444 None:intergenic
CAGCCCATGCTACAAGAGCT+TGG 0.469143 1:+98389140 MsG0180005977.01.T01:CDS
GAAGGTGCAGCAACAGATGC+AGG 0.472270 1:-98388058 None:intergenic
GAACCTATGGAGGGCGGAGA+AGG 0.477244 1:+98389229 MsG0180005977.01.T01:CDS
CCTGCTCCTGTTACCTCAAG+TGG 0.477887 1:+98388723 MsG0180005977.01.T01:CDS
TTGTGCACTTGCAGGCGCTC+GGG 0.479546 1:-98388655 None:intergenic
TCGCCTGATTAACGAACCTA+TGG 0.480298 1:+98389216 MsG0180005977.01.T01:CDS
CTCATCTTATGAGATTGATT+CGG 0.480393 1:+98389174 MsG0180005977.01.T01:CDS
GGAAATGAGAAGGTCATGTA+AGG 0.481331 1:-98390145 None:intergenic
GTTGTGCACTTGCAGGCGCT+CGG 0.483214 1:-98388656 None:intergenic
CAGCAAATGCTTATTCATCA+AGG 0.483953 1:+98387186 MsG0180005977.01.T01:CDS
TTGCCAAGCTCTTGTAGCAT+GGG 0.484703 1:-98389143 None:intergenic
AGCCTACCTTGGATTTCACT+TGG 0.485592 1:+98390282 MsG0180005977.01.T01:three_prime_UTR
CTGCTGGAGATTCAGCTTGT+CGG 0.490405 1:-98388629 None:intergenic
TGATCGTGCTATAGTATTGG+AGG 0.491124 1:+98389884 MsG0180005977.01.T01:CDS
CACCCTTCTCCGCCCTCCAT+AGG 0.495258 1:-98389232 None:intergenic
AGGTTCTGATGTCTATGGGC+AGG 0.496402 1:+98388264 MsG0180005977.01.T01:CDS
AGTTTATATATAGCCTACCT+TGG 0.496806 1:+98390271 MsG0180005977.01.T01:three_prime_UTR
AGGTAGGCTATATATAAACT+TGG 0.498863 1:-98390268 None:intergenic
GTAGCAGTTGCCGAGGATAT+GGG 0.499649 1:-98388100 None:intergenic
GCAGGAGCTGGAGCTGGGGA+AGG 0.501793 1:-98388076 None:intergenic
GCAAATGACTATGTATATGA+AGG 0.502025 1:-98390183 None:intergenic
ATAAGCATTTGCTGTGCAGC+AGG 0.503524 1:-98387177 None:intergenic
CCACTTGAGGTAACAGGAGC+AGG 0.508160 1:-98388723 None:intergenic
GCAGGCGCTCGGGACACTGC+TGG 0.508270 1:-98388645 None:intergenic
CCTACCTTGGATTTCACTTG+GGG 0.509791 1:+98390284 MsG0180005977.01.T01:three_prime_UTR
AATATAAGACATAACTACTA+AGG 0.514657 1:-98389081 None:intergenic
TCTCAAGTTGACTGTGGACA+AGG 0.521567 1:+98390096 MsG0180005977.01.T01:three_prime_UTR
GACTGTTACCTGGGGAAAAG+AGG 0.522630 1:-98388767 None:intergenic
CCTGATTAACGAACCTATGG+AGG 0.524546 1:+98389219 MsG0180005977.01.T01:CDS
GAAGGATGGTACCACCTTGG+AGG 0.528142 1:+98387218 MsG0180005977.01.T01:CDS
TTATTGCAGCTTGAAGCAAT+GGG 0.537260 1:+98389858 MsG0180005977.01.T01:intron
TCTCATTTCCTCCCCATCGA+GGG 0.537788 1:+98390158 MsG0180005977.01.T01:three_prime_UTR
CATGTGGTCTAAAAGGTAGT+TGG 0.538667 1:-98389943 None:intergenic
GTTCCAAGCATTGCGAGCTA+TGG 0.544462 1:+98389022 MsG0180005977.01.T01:intron
GGAGCAGGCTGAGCTGCTTG+TGG 0.545404 1:-98388708 None:intergenic
TATATGAAGGAGCCCTCGAT+GGG 0.547845 1:-98390170 None:intergenic
GGGAAGGTTCTGATGTCTAT+GGG 0.550980 1:+98388260 MsG0180005977.01.T01:intron
GTTGCCGAGGATATGGGAGC+AGG 0.551906 1:-98388094 None:intergenic
TAGGAGCAGCACTTGTCTGT+GGG 0.552599 1:-98387861 None:intergenic
GCTGCAGCCTCAGGATTCAC+AGG 0.553492 1:-98388678 None:intergenic
AGCATTGCGAGCTATGGTGC+AGG 0.553590 1:+98389028 MsG0180005977.01.T01:CDS
CTATTGGGACAGATGGCTGC+TGG 0.554126 1:+98389396 MsG0180005977.01.T01:CDS
TCAAGCTCCTGCTGCAACTG+CGG 0.558262 1:+98387912 MsG0180005977.01.T01:CDS
TAATTTGGAAATCATTGGAA+AGG 0.565168 1:-98389990 None:intergenic
TTTGAAGGATGGTACCACCT+TGG 0.566393 1:+98387215 MsG0180005977.01.T01:CDS
GTAGGAGCAGCACTTGTCTG+TGG 0.567111 1:-98387862 None:intergenic
AGCTCCTGCTCCCATATCCT+CGG 0.569515 1:+98388090 MsG0180005977.01.T01:CDS
ATGTAAGGGCGGCAATGAGA+AGG 0.572922 1:-98390130 None:intergenic
TTCTCATTTCCTCCCCATCG+AGG 0.575254 1:+98390157 MsG0180005977.01.T01:three_prime_UTR
GGTAGGCTATATATAAACTT+GGG 0.576843 1:-98390267 None:intergenic
GAACAACCTATTGGGACAGA+TGG 0.579220 1:+98389389 MsG0180005977.01.T01:CDS
GTGGTCTAAAAGGTAGTTGG+CGG 0.579276 1:-98389940 None:intergenic
AACCTATGGAGGGCGGAGAA+GGG 0.586771 1:+98389230 MsG0180005977.01.T01:CDS
GGGAGCAGGAGCTGGAGCTG+GGG 0.590515 1:-98388080 None:intergenic
TCCTATATATTACAGTTACC+GGG 0.594931 1:+98388479 MsG0180005977.01.T01:intron
GTATATGAAGGAGCCCTCGA+TGG 0.597147 1:-98390171 None:intergenic
CTTGAGGTGAAACAGACACT+GGG 0.598069 1:-98387894 None:intergenic
AGCAAATGCTTATTCATCAA+GGG 0.601247 1:+98387187 MsG0180005977.01.T01:CDS
TGAAGGAGCCCTCGATGGGG+AGG 0.605340 1:-98390166 None:intergenic
CGAATCAATCTCATAAGATG+AGG 0.606271 1:-98389173 None:intergenic
CCTGGGGAAAAGAGGTCTAG+AGG 0.607348 1:-98388759 None:intergenic
GCTTGAGGTGAAACAGACAC+TGG 0.613953 1:-98387895 None:intergenic
CTGCAGCAATAACAGAATCA+GGG 0.614485 1:-98389120 None:intergenic
GCAGTTGCAGCAGGAGCTTG+AGG 0.616444 1:-98387910 None:intergenic
CTCAAGTTGACTGTGGACAA+GGG 0.617111 1:+98390097 MsG0180005977.01.T01:three_prime_UTR
TAGGTTCGTTAATCAGGCGA+AGG 0.621575 1:-98389213 None:intergenic
CTGATTAACGAACCTATGGA+GGG 0.626493 1:+98389220 MsG0180005977.01.T01:CDS
CGTTCCGAATATAATGTCAT+CGG 0.627175 1:+98385838 None:intergenic
ATTAGCATTAGGTCCACTTG+AGG 0.629093 1:-98388736 None:intergenic
TATTTACGTAGCAGTTGCCG+AGG 0.633237 1:-98388107 None:intergenic
GAGGTGAAACAGACACTGGG+GGG 0.636174 1:-98387891 None:intergenic
AGGAGCAGCACTTGTCTGTG+GGG 0.638148 1:-98387860 None:intergenic
GTTCGTCGAACTCATGCATG+TGG 0.641221 1:-98389959 None:intergenic
ACAATCTCTCAAGTTGACTG+TGG 0.650014 1:+98390090 MsG0180005977.01.T01:three_prime_UTR
GAAATGAGAAGGTCATGTAA+GGG 0.654393 1:-98390144 None:intergenic
TGGACCCCAAGTGAAATCCA+AGG 0.656827 1:-98390288 None:intergenic
ATCAGTAACTGTCACACCCG+AGG 0.657070 1:+98389428 MsG0180005977.01.T01:CDS
TGAGGTGAAACAGACACTGG+GGG 0.659088 1:-98387892 None:intergenic
GGTGTGACAGTTACTGATTG+TGG 0.672986 1:-98389423 None:intergenic
ATGAGAAGGTCATGTAAGGG+CGG 0.678661 1:-98390141 None:intergenic
TCGATGGGGAGGAAATGAGA+AGG 0.679006 1:-98390155 None:intergenic
CCCCAAGTGAAATCCAAGGT+AGG 0.684409 1:-98390284 None:intergenic
AGGTGAAACAGACACTGGGG+GGG 0.685526 1:-98387890 None:intergenic
GATAGACATCTACACCTGAA+CGG 0.694388 1:-98387155 None:intergenic
TGCACAACCTGTGAATCCTG+AGG 0.701039 1:+98388671 MsG0180005977.01.T01:CDS
ATTAACGAACCTATGGAGGG+CGG 0.702160 1:+98389223 MsG0180005977.01.T01:CDS
TTGAGGTGAAACAGACACTG+GGG 0.743648 1:-98387893 None:intergenic
ATATGAAGGAGCCCTCGATG+GGG 0.744643 1:-98390169 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAATTCTTCT+GGG + Chr1:98388808-98388827 MsG0180005977.01.T01:intron 10.0%
!! ATTTAAATAAAAAATTAACC+AGG - Chr1:98388581-98388600 None:intergenic 10.0%
!! CATAATAAGTTATTATTTAA+TGG + Chr1:98386907-98386926 MsG0180005977.01.T01:intron 10.0%
!! CATTAAATAATAACTTATTA+TGG - Chr1:98386909-98386928 None:intergenic 10.0%
!! TAAAAAAAAAAAAATTCTTC+TGG + Chr1:98388807-98388826 MsG0180005977.01.T01:intron 10.0%
!!! AGAACTTTTTTTTTAATATA+TGG + Chr1:98387640-98387659 MsG0180005977.01.T01:intron 10.0%
!!! ATTTTTATATTTTTGAGTTT+TGG + Chr1:98387412-98387431 MsG0180005977.01.T01:intron 10.0%
!!! TTATAATTGTTTTTGTATAT+TGG + Chr1:98389288-98389307 MsG0180005977.01.T01:intron 10.0%
!! AAAAATAATTTGGAAATCAT+TGG - Chr1:98389998-98390017 None:intergenic 15.0%
!! AAAATACAATAAATAGGTAA+CGG - Chr1:98389583-98389602 None:intergenic 15.0%
!! AAAGATAACGAAAAATAATT+TGG - Chr1:98390008-98390027 None:intergenic 15.0%
!!! AAAGATTAATTTTTTGAAAC+AGG + Chr1:98388239-98388258 MsG0180005977.01.T01:intron 15.0%
!!! AAGATTAATTTTTTGAAACA+GGG + Chr1:98388240-98388259 MsG0180005977.01.T01:intron 15.0%
!!! ACATTATACATTTGTTAATT+AGG + Chr1:98389656-98389675 MsG0180005977.01.T01:intron 15.0%
!!! ATAATTTTGTACATTGAAAA+TGG + Chr1:98388173-98388192 MsG0180005977.01.T01:intron 15.0%
!! AAATTACAAAATACAGAGAA+AGG - Chr1:98389814-98389833 None:intergenic 20.0%
!! AATATAAGACATAACTACTA+AGG - Chr1:98389084-98389103 None:intergenic 20.0%
!! ATAGAATATAACAAGCATTA+AGG - Chr1:98387605-98387624 None:intergenic 20.0%
!! ATTCTGTTTACTTTAATGTT+TGG + Chr1:98388129-98388148 MsG0180005977.01.T01:intron 20.0%
!! ATTTGATTGTTAGTTAAGTT+AGG + Chr1:98386436-98386455 MsG0180005977.01.T01:intron 20.0%
!! CCAAGTATAAGAAATTTAAA+AGG - Chr1:98390043-98390062 None:intergenic 20.0%
!! TATAAACTTGGGAATAAAAA+AGG - Chr1:98390259-98390278 None:intergenic 20.0%
!! TTGTTATATATTTGAGTCTT+AGG + Chr1:98389739-98389758 MsG0180005977.01.T01:intron 20.0%
!! TTTGATTGTTAGTTAAGTTA+GGG + Chr1:98386437-98386456 MsG0180005977.01.T01:intron 20.0%
!!! AATAAACTAGTAGCATATTT+TGG + Chr1:98386092-98386111 MsG0180005977.01.T01:intron 20.0%
!!! AATGCTTGTTATATTCTATT+CGG + Chr1:98387606-98387625 MsG0180005977.01.T01:intron 20.0%
!!! ATAAACTAGTAGCATATTTT+GGG + Chr1:98386093-98386112 MsG0180005977.01.T01:intron 20.0%
!!! ATTGTTTTTGTATATTGGAA+TGG + Chr1:98389293-98389312 MsG0180005977.01.T01:intron 20.0%
!!! CCTTTTAAATTTCTTATACT+TGG + Chr1:98390040-98390059 MsG0180005977.01.T01:three_prime_UTR 20.0%
!!! CTGTATTTTGTAATTTATGT+GGG + Chr1:98389818-98389837 MsG0180005977.01.T01:intron 20.0%
!!! GAATTTTGTTGTTAAGTTTT+TGG + Chr1:98386628-98386647 MsG0180005977.01.T01:intron 20.0%
!!! TCTGAATTATGATTTTTAGT+GGG + Chr1:98386606-98386625 MsG0180005977.01.T01:intron 20.0%
!!! TCTGTATTTTGTAATTTATG+TGG + Chr1:98389817-98389836 MsG0180005977.01.T01:intron 20.0%
!!! TTACTTTAATGTTTGGAATT+TGG + Chr1:98388136-98388155 MsG0180005977.01.T01:intron 20.0%
!!! TTATATTTTTGAGTTTTGGT+TGG + Chr1:98387416-98387435 MsG0180005977.01.T01:intron 20.0%
!!! TTCTGAATTATGATTTTTAG+TGG + Chr1:98386605-98386624 MsG0180005977.01.T01:intron 20.0%
!!! TTGAGTTGTTTAGATATATT+TGG + Chr1:98387968-98387987 MsG0180005977.01.T01:intron 20.0%
!!! TTGTTTTTGTATATTGGAAT+GGG + Chr1:98389294-98389313 MsG0180005977.01.T01:intron 20.0%
!!! TTTTTGTTGTTATATTTGCT+GGG + Chr1:98387765-98387784 MsG0180005977.01.T01:intron 20.0%
!!! TTTTTTGTTGTTATATTTGC+TGG + Chr1:98387764-98387783 MsG0180005977.01.T01:intron 20.0%
! AAAAAAAAAATTCTTCTGGG+TGG + Chr1:98388811-98388830 MsG0180005977.01.T01:intron 25.0%
! AACAATTATGTATTCTTTGC+AGG + Chr1:98387837-98387856 MsG0180005977.01.T01:intron 25.0%
! AAGAATCATCAAGAAATAAC+AGG - Chr1:98388513-98388532 None:intergenic 25.0%
! AATATAGCAGAAAACAATTG+TGG - Chr1:98387077-98387096 None:intergenic 25.0%
! ATACTTAACTGTATGTTACA+GGG + Chr1:98388835-98388854 MsG0180005977.01.T01:intron 25.0%
! CAAAACCTATTAAGACTATA+AGG + Chr1:98389525-98389544 MsG0180005977.01.T01:intron 25.0%
! GAGGTTAAATTCACTAAATA+AGG - Chr1:98386972-98386991 None:intergenic 25.0%
! GTCGAGAAAATACAATAAAT+AGG - Chr1:98389589-98389608 None:intergenic 25.0%
! GTGCATAAATAGTTCAAATT+TGG + Chr1:98389683-98389702 MsG0180005977.01.T01:intron 25.0%
! TAATGGAACAATCAAGATAA+TGG - Chr1:98388207-98388226 None:intergenic 25.0%
! TAATTTGGAAATCATTGGAA+AGG - Chr1:98389993-98390012 None:intergenic 25.0%
! TATACTTAACTGTATGTTAC+AGG + Chr1:98388834-98388853 MsG0180005977.01.T01:intron 25.0%
! TATTAAGACTATAAGGACTA+AGG + Chr1:98389532-98389551 MsG0180005977.01.T01:intron 25.0%
! TGCACTGAATTTATTACTAT+AGG + Chr1:98388955-98388974 MsG0180005977.01.T01:intron 25.0%
! TTATATATTTGAGTCTTAGG+CGG + Chr1:98389742-98389761 MsG0180005977.01.T01:intron 25.0%
! TTCCTATATATTACAGTTAC+CGG + Chr1:98388478-98388497 MsG0180005977.01.T01:intron 25.0%
!! GATTCTTACATATCTTGTTT+CGG + Chr1:98388526-98388545 MsG0180005977.01.T01:intron 25.0%
!! TATTTTGTAATTTATGTGGG+TGG + Chr1:98389821-98389840 MsG0180005977.01.T01:intron 25.0%
!! TCTTTTAGCAACATAGTTAA+TGG - Chr1:98388224-98388243 None:intergenic 25.0%
!! TTAGTCCTTATAGTCTTAAT+AGG - Chr1:98389533-98389552 None:intergenic 25.0%
!! TTCTATATTTTTCTTGACTG+CGG - Chr1:98387134-98387153 None:intergenic 25.0%
!! TTTAAGTTATGATTTCGATG+TGG + Chr1:98386549-98386568 MsG0180005977.01.T01:intron 25.0%
!! TTTTTCGTTATCTTTTCTCT+CGG + Chr1:98390013-98390032 MsG0180005977.01.T01:three_prime_UTR 25.0%
!!! GTTGTTAAGTTTTTGGTTAT+TGG + Chr1:98386635-98386654 MsG0180005977.01.T01:intron 25.0%
!!! GTTGTTGATTTGAATTTTCT+TGG + Chr1:98386502-98386521 MsG0180005977.01.T01:intron 25.0%
!!! GTTTGAGTCTTATATGATTT+TGG + Chr1:98388551-98388570 MsG0180005977.01.T01:intron 25.0%
!!! TTAATTTTTTGAAACAGGGA+AGG + Chr1:98388244-98388263 MsG0180005977.01.T01:intron 25.0%
!!! TTTTGTTGTTATATTTGCTG+GGG + Chr1:98387766-98387785 MsG0180005977.01.T01:intron 25.0%
AAAACTCGATCAACATATGT+AGG - Chr1:98389619-98389638 None:intergenic 30.0%
AAACTCGATCAACATATGTA+GGG - Chr1:98389618-98389637 None:intergenic 30.0%
AACATAATCAACTCCAGTTA+TGG - Chr1:98387544-98387563 None:intergenic 30.0%
AAGTCAATAATTAACCGAAC+AGG - Chr1:98386480-98386499 None:intergenic 30.0%
ACAAGCATTAAGGAATGAAA+AGG - Chr1:98387595-98387614 None:intergenic 30.0%
AGAAAATGACAGATCGATTA+AGG - Chr1:98389502-98389521 None:intergenic 30.0%
AGATTCAGAGTTCATTTGAA+TGG - Chr1:98388019-98388038 None:intergenic 30.0%
AGCAAATGCTTATTCATCAA+GGG + Chr1:98387187-98387206 MsG0180005977.01.T01:CDS 30.0%
AGGTAGGCTATATATAAACT+TGG - Chr1:98390271-98390290 None:intergenic 30.0%
AGTCAATAATTAACCGAACA+GGG - Chr1:98386479-98386498 None:intergenic 30.0%
AGTTCAACAAATCCTAGATA+TGG + Chr1:98388326-98388345 MsG0180005977.01.T01:intron 30.0%
AGTTTATATATAGCCTACCT+TGG + Chr1:98390271-98390290 MsG0180005977.01.T01:three_prime_UTR 30.0%
ATCTTCATTTCAATTTCGAC+AGG + Chr1:98388035-98388054 MsG0180005977.01.T01:intron 30.0%
CTCAATTATTGAAATTCTCG+TGG - Chr1:98386845-98386864 None:intergenic 30.0%
CTCATCTTATGAGATTGATT+CGG + Chr1:98389174-98389193 MsG0180005977.01.T01:CDS 30.0%
GAAAAATATAGAAACCGTTC+AGG + Chr1:98387141-98387160 MsG0180005977.01.T01:CDS 30.0%
GCAAATGACTATGTATATGA+AGG - Chr1:98390186-98390205 None:intergenic 30.0%
GGATAAAAGAAAGAGTGAAA+AGG - Chr1:98386168-98386187 None:intergenic 30.0%
GGTAGGCTATATATAAACTT+GGG - Chr1:98390270-98390289 None:intergenic 30.0%
GGTTCAGAATAAAAACAACA+CGG - Chr1:98387056-98387075 None:intergenic 30.0%
GTTCAACAAATCCTAGATAT+GGG + Chr1:98388327-98388346 MsG0180005977.01.T01:intron 30.0%
TATATATTTGAGTCTTAGGC+GGG + Chr1:98389743-98389762 MsG0180005977.01.T01:intron 30.0%
TCCTATATATTACAGTTACC+GGG + Chr1:98388479-98388498 MsG0180005977.01.T01:intron 30.0%
TGTCTTATATTCTCTTCTTG+TGG + Chr1:98389093-98389112 MsG0180005977.01.T01:CDS 30.0%
TGTGTCTGATTGTAAACTAT+GGG - Chr1:98385897-98385916 None:intergenic 30.0%
TTGCAACAAAAATGAGGAAT+TGG + Chr1:98389917-98389936 MsG0180005977.01.T01:CDS 30.0%
TTGTGTCTGATTGTAAACTA+TGG - Chr1:98385898-98385917 None:intergenic 30.0%
TTTGTCTATTTAGCCATAAC+TGG + Chr1:98387528-98387547 MsG0180005977.01.T01:intron 30.0%
! ATTGTTTCTCAGAAATATGG+AGG + Chr1:98389713-98389732 MsG0180005977.01.T01:intron 30.0%
! CCATATTTCTGAGAAACAAT+AGG - Chr1:98389713-98389732 None:intergenic 30.0%
! CCTATTGTTTCTCAGAAATA+TGG + Chr1:98389710-98389729 MsG0180005977.01.T01:intron 30.0%
! GTTTTCTTGTGTTATCTTGA+CGG - Chr1:98386010-98386029 None:intergenic 30.0%
! TGTTTTCAGTTCCTGTAAAT+GGG - Chr1:98387811-98387830 None:intergenic 30.0%
! TTTTGATCGTGCTATAGTAT+TGG + Chr1:98389881-98389900 MsG0180005977.01.T01:CDS 30.0%
!! AATCAATGTAGTTTTCGAGA+CGG - Chr1:98387317-98387336 None:intergenic 30.0%
!! CTTATACTTGGTGTTAAATG+AGG + Chr1:98390052-98390071 MsG0180005977.01.T01:three_prime_UTR 30.0%
!! TTAAGATTGAGTGTTGAAAG+TGG - Chr1:98385937-98385956 None:intergenic 30.0%
!!! AGTGTTTTTTTTTCCCTGTT+CGG + Chr1:98386463-98386482 MsG0180005977.01.T01:intron 30.0%
!!! ATTTTTGAGTTTTGGTTGGT+TGG + Chr1:98387420-98387439 MsG0180005977.01.T01:intron 30.0%
AAAAATGTCCTAGAAACACC+AGG + Chr1:98389779-98389798 MsG0180005977.01.T01:intron 35.0%
AAAATGTCCTAGAAACACCA+GGG + Chr1:98389780-98389799 MsG0180005977.01.T01:intron 35.0%
AAAGCCAAAAAGTAAGCCAA+TGG - Chr1:98389356-98389375 None:intergenic 35.0%
AAATAACAGGAATTCCAACC+CGG - Chr1:98388500-98388519 None:intergenic 35.0%
AACACAAGAAAACATCGAAG+CGG + Chr1:98386017-98386036 MsG0180005977.01.T01:intron 35.0%
AACTTACACGTTCAATAGCT+TGG - Chr1:98389458-98389477 None:intergenic 35.0%
AATTTCGAGGCTATTCTTTG+CGG + Chr1:98386221-98386240 MsG0180005977.01.T01:intron 35.0%
ACCCGGTAACTGTAATATAT+AGG - Chr1:98388483-98388502 None:intergenic 35.0%
ACTTGAAAATACCTGTCCAT+TGG + Chr1:98389337-98389356 MsG0180005977.01.T01:intron 35.0%
AGATTCTAACCACTCCAAAT+TGG - Chr1:98387464-98387483 None:intergenic 35.0%
AGTGGGTAAAATTACGGATT+TGG - Chr1:98385871-98385890 None:intergenic 35.0%
AGTTTATCCCAGCTATCTTA+AGG + Chr1:98387496-98387515 MsG0180005977.01.T01:intron 35.0%
ATATATTACAGTTACCGGGT+TGG + Chr1:98388483-98388502 MsG0180005977.01.T01:intron 35.0%
ATATATTTGAGTCTTAGGCG+GGG + Chr1:98389744-98389763 MsG0180005977.01.T01:intron 35.0%
ATTGTAAACTATGGGTGAAG+TGG - Chr1:98385889-98385908 None:intergenic 35.0%
CAGCAAATGCTTATTCATCA+AGG + Chr1:98387186-98387205 MsG0180005977.01.T01:CDS 35.0%
CATGTAAAACAAGTCACTCA+CGG - Chr1:98387940-98387959 None:intergenic 35.0%
CATTGTGATCATGCTTTCAA+AGG + Chr1:98387266-98387285 MsG0180005977.01.T01:CDS 35.0%
CGAATCAATCTCATAAGATG+AGG - Chr1:98389176-98389195 None:intergenic 35.0%
CTGTGTTTGCGACAAAATAA+CGG - Chr1:98387360-98387379 None:intergenic 35.0%
CTGTTTGGATCATACTTTCT+AGG + Chr1:98386696-98386715 MsG0180005977.01.T01:intron 35.0%
CTTTGCTTGCAACAAAAATG+AGG + Chr1:98389911-98389930 MsG0180005977.01.T01:CDS 35.0%
GAAATGAGAAGGTCATGTAA+GGG - Chr1:98390147-98390166 None:intergenic 35.0%
GAAGAAACCTGCAATATTTG+TGG - Chr1:98389058-98389077 None:intergenic 35.0%
GAAGGATATTACCCATTTAC+AGG + Chr1:98387797-98387816 MsG0180005977.01.T01:intron 35.0%
GCAATGAAACTTCTGATCAA+AGG - Chr1:98386807-98386826 None:intergenic 35.0%
GTGGTATGTAGAATATGATG+TGG + Chr1:98386568-98386587 MsG0180005977.01.T01:intron 35.0%
GTTTATCCCAGCTATCTTAA+GGG + Chr1:98387497-98387516 MsG0180005977.01.T01:intron 35.0%
TTATTGCAGCTTGAAGCAAT+GGG + Chr1:98389858-98389877 MsG0180005977.01.T01:intron 35.0%
TTGTAAACTATGGGTGAAGT+GGG - Chr1:98385888-98385907 None:intergenic 35.0%
! AGGTTTTCGTCAACTCTTAA+AGG + Chr1:98386257-98386276 MsG0180005977.01.T01:intron 35.0%
! CTGTTTTCAGTTCCTGTAAA+TGG - Chr1:98387812-98387831 None:intergenic 35.0%
! GTCAAATTACGCTTGTTAGA+AGG - Chr1:98390234-98390253 None:intergenic 35.0%
! GTGGTGTTTGATAGTTATAC+TGG + Chr1:98387011-98387030 MsG0180005977.01.T01:intron 35.0%
!! ATGCTTTAGGAACAACCTAT+TGG + Chr1:98389380-98389399 MsG0180005977.01.T01:intron 35.0%
!! ATGTTGATCGAGTTTTGTCT+AGG + Chr1:98389623-98389642 MsG0180005977.01.T01:intron 35.0%
!! TCATCAAGGGAAAGTTTTGA+AGG + Chr1:98387200-98387219 MsG0180005977.01.T01:CDS 35.0%
!! TGCTTTAGGAACAACCTATT+GGG + Chr1:98389381-98389400 MsG0180005977.01.T01:intron 35.0%
!! TTTGGCTTTCAACATGCTTT+AGG + Chr1:98389367-98389386 MsG0180005977.01.T01:intron 35.0%
!!! AGCTACTTTATTTTCCTCCA+AGG - Chr1:98387235-98387254 None:intergenic 35.0%
!!! TACTTTATTTTCCTCCAAGG+TGG - Chr1:98387232-98387251 None:intergenic 35.0%
!!! TTATATGATTTTGGCTTGCC+TGG + Chr1:98388560-98388579 MsG0180005977.01.T01:intron 35.0%
ACTCATGCATGTGGTCTAAA+AGG - Chr1:98389953-98389972 None:intergenic 40.0%
AGCCTCGAAATTCGAAACTA+GGG - Chr1:98386213-98386232 None:intergenic 40.0%
AGGCAATCCACAAATATTGC+AGG + Chr1:98389048-98389067 MsG0180005977.01.T01:CDS 40.0%
AGTTCCACATTGTCTCTGTT+TGG + Chr1:98386681-98386700 MsG0180005977.01.T01:intron 40.0%
ATAAAACAGCGACTGTTACC+TGG - Chr1:98388780-98388799 None:intergenic 40.0%
ATCCCTAGTTTCGAATTTCG+AGG + Chr1:98386208-98386227 MsG0180005977.01.T01:intron 40.0%
ATTAGCATTAGGTCCACTTG+AGG - Chr1:98388739-98388758 None:intergenic 40.0%
ATTGTGAAGCAGAAGTAGTC+TGG - Chr1:98387394-98387413 None:intergenic 40.0%
CAAAAAGTAAGCCAATGGAC+AGG - Chr1:98389351-98389370 None:intergenic 40.0%
CAACAAATCCTAGATATGGG+AGG + Chr1:98388330-98388349 MsG0180005977.01.T01:intron 40.0%
CATGTGGTCTAAAAGGTAGT+TGG - Chr1:98389946-98389965 None:intergenic 40.0%
CTGATTAACGAACCTATGGA+GGG + Chr1:98389220-98389239 MsG0180005977.01.T01:CDS 40.0%
CTGCAGCAATAACAGAATCA+GGG - Chr1:98389123-98389142 None:intergenic 40.0%
CTTATTGCAGCTTGAAGCAA+TGG + Chr1:98389857-98389876 MsG0180005977.01.T01:intron 40.0%
GAGTCGAAATCAGAGTTTGA+GGG - Chr1:98386325-98386344 None:intergenic 40.0%
GATAGACATCTACACCTGAA+CGG - Chr1:98387158-98387177 None:intergenic 40.0%
GCTTCAAGCTGCAATAAGAA+AGG - Chr1:98389855-98389874 None:intergenic 40.0%
GGAAATGAGAAGGTCATGTA+AGG - Chr1:98390148-98390167 None:intergenic 40.0%
GGGTGAAGTGGGTAAAATTA+CGG - Chr1:98385877-98385896 None:intergenic 40.0%
TAAAACAGCGACTGTTACCT+GGG - Chr1:98388779-98388798 None:intergenic 40.0%
TAATTGACCCTGGTGTTTCT+AGG - Chr1:98389790-98389809 None:intergenic 40.0%
TAGCCTCGAAATTCGAAACT+AGG - Chr1:98386214-98386233 None:intergenic 40.0%
TCTTGTGTTATCTTGACGGT+GGG - Chr1:98386006-98386025 None:intergenic 40.0%
TGAGTCGAAATCAGAGTTTG+AGG - Chr1:98386326-98386345 None:intergenic 40.0%
TGATCCAAACAGAGACAATG+TGG - Chr1:98386688-98386707 None:intergenic 40.0%
TGCGTAGAAAATCCAGAGAA+CGG - Chr1:98388893-98388912 None:intergenic 40.0%
TGGAATCTCACATGCCAATT+TGG + Chr1:98387447-98387466 MsG0180005977.01.T01:intron 40.0%
TGGACTGTCAAAAGTGATAC+CGG + Chr1:98386927-98386946 MsG0180005977.01.T01:intron 40.0%
TTCTTGTGTTATCTTGACGG+TGG - Chr1:98386007-98386026 None:intergenic 40.0%
TTTGCTGGGGTAAGTAAAGA+AGG + Chr1:98387779-98387798 MsG0180005977.01.T01:intron 40.0%
! AGGTCTAGAGGATTAGCATT+AGG - Chr1:98388750-98388769 None:intergenic 40.0%
! TCTTTTATCCGTCGTCGTTT+TGG + Chr1:98386178-98386197 MsG0180005977.01.T01:intron 40.0%
! TGATCGTGCTATAGTATTGG+AGG + Chr1:98389884-98389903 MsG0180005977.01.T01:CDS 40.0%
! TTCGTTATCTTTTCTCTCGG+TGG + Chr1:98390016-98390035 MsG0180005977.01.T01:three_prime_UTR 40.0%
!! ACAATCTCTCAAGTTGACTG+TGG + Chr1:98390090-98390109 MsG0180005977.01.T01:three_prime_UTR 40.0%
!! TGAGATTGATTCGGATCATC+AGG + Chr1:98389183-98389202 MsG0180005977.01.T01:CDS 40.0%
!!! CAAGGGAAAGTTTTGAAGGA+TGG + Chr1:98387204-98387223 MsG0180005977.01.T01:CDS 40.0%
!!! CTGTCCATTGGCTTACTTTT+TGG + Chr1:98389349-98389368 MsG0180005977.01.T01:intron 40.0%
AAAACAGCGACTGTTACCTG+GGG - Chr1:98388778-98388797 None:intergenic 45.0%
AAATATTCAACCGCCCTCTC+AGG - Chr1:98388410-98388429 None:intergenic 45.0%
AACGTGTATGGATAGGAGGT+GGG - Chr1:98385966-98385985 None:intergenic 45.0%
AATATTCAACCGCCCTCTCA+GGG - Chr1:98388409-98388428 None:intergenic 45.0%
AATTTGCAGTGTGCAAAGCG+AGG - Chr1:98386991-98387010 None:intergenic 45.0%
ACCTCCTATCCATACACGTT+AGG + Chr1:98385966-98385985 MsG0180005977.01.T01:intron 45.0%
ACTTGACACACGTCAAACAC+CGG + Chr1:98386769-98386788 MsG0180005977.01.T01:intron 45.0%
AGAGAAAGGCTAATTGACCC+TGG - Chr1:98389800-98389819 None:intergenic 45.0%
AGCCTACCTTGGATTTCACT+TGG + Chr1:98390282-98390301 MsG0180005977.01.T01:three_prime_UTR 45.0%
ATGAGAAGGTCATGTAAGGG+CGG - Chr1:98390144-98390163 None:intergenic 45.0%
ATTAACGAACCTATGGAGGG+CGG + Chr1:98389223-98389242 MsG0180005977.01.T01:CDS 45.0%
CAAATCCTAGATATGGGAGG+AGG + Chr1:98388333-98388352 MsG0180005977.01.T01:intron 45.0%
CACAGACCCTTAAGATAGCT+GGG - Chr1:98387506-98387525 None:intergenic 45.0%
CCTACCTTGGATTTCACTTG+GGG + Chr1:98390284-98390303 MsG0180005977.01.T01:three_prime_UTR 45.0%
CCTCCATAGGTTCGTTAATC+AGG - Chr1:98389222-98389241 None:intergenic 45.0%
CCTGATTAACGAACCTATGG+AGG + Chr1:98389219-98389238 MsG0180005977.01.T01:CDS 45.0%
CTTGAGGTGAAACAGACACT+GGG - Chr1:98387897-98387916 None:intergenic 45.0%
GAACAACCTATTGGGACAGA+TGG + Chr1:98389389-98389408 MsG0180005977.01.T01:CDS 45.0%
GCCTACCTTGGATTTCACTT+GGG + Chr1:98390283-98390302 MsG0180005977.01.T01:three_prime_UTR 45.0%
GCTGCAGCAATAACAGAATC+AGG - Chr1:98389124-98389143 None:intergenic 45.0%
GCTTTGCACACTGCAAATTG+TGG + Chr1:98386992-98387011 MsG0180005977.01.T01:intron 45.0%
GTGGTCTAAAAGGTAGTTGG+CGG - Chr1:98389943-98389962 None:intergenic 45.0%
TAACGTGTATGGATAGGAGG+TGG - Chr1:98385967-98385986 None:intergenic 45.0%
TAGGTTCGTTAATCAGGCGA+AGG - Chr1:98389216-98389235 None:intergenic 45.0%
TATATGAAGGAGCCCTCGAT+GGG - Chr1:98390173-98390192 None:intergenic 45.0%
TATTTACGTAGCAGTTGCCG+AGG - Chr1:98388110-98388129 None:intergenic 45.0%
TCGCCTGATTAACGAACCTA+TGG + Chr1:98389216-98389235 MsG0180005977.01.T01:CDS 45.0%
TCTCACATGCCAATTTGGAG+TGG + Chr1:98387452-98387471 MsG0180005977.01.T01:intron 45.0%
TGATACCGGCCTTACAACTT+AGG + Chr1:98386941-98386960 MsG0180005977.01.T01:intron 45.0%
TGATCTTCACGCGTTACTTG+CGG - Chr1:98386058-98386077 None:intergenic 45.0%
TTACAGGGCCTGCCAAATAT+TGG + Chr1:98388850-98388869 MsG0180005977.01.T01:intron 45.0%
TTAGGTCCACTTGAGGTAAC+AGG - Chr1:98388732-98388751 None:intergenic 45.0%
TTCGAAGACCAAAACGACGA+CGG - Chr1:98386189-98386208 None:intergenic 45.0%
TTGAGGTGAAACAGACACTG+GGG - Chr1:98387896-98387915 None:intergenic 45.0%
TTGCCAAGCTCTTGTAGCAT+GGG - Chr1:98389146-98389165 None:intergenic 45.0%
TTTGAAGGATGGTACCACCT+TGG + Chr1:98387215-98387234 MsG0180005977.01.T01:CDS 45.0%
TTTGCCAAGCTCTTGTAGCA+TGG - Chr1:98389147-98389166 None:intergenic 45.0%
! AGGGAAGGTTCTGATGTCTA+TGG + Chr1:98388259-98388278 MsG0180005977.01.T01:intron 45.0%
! GGGAAGGTTCTGATGTCTAT+GGG + Chr1:98388260-98388279 MsG0180005977.01.T01:intron 45.0%
! GGTGTGACAGTTACTGATTG+TGG - Chr1:98389426-98389445 None:intergenic 45.0%
!! ATAAGCATTTGCTGTGCAGC+AGG - Chr1:98387180-98387199 None:intergenic 45.0%
!! CTCAAGTTGACTGTGGACAA+GGG + Chr1:98390097-98390116 MsG0180005977.01.T01:three_prime_UTR 45.0%
!! GTTATCTTGACGGTGGGTTT+TGG - Chr1:98386000-98386019 None:intergenic 45.0%
!! TCTCAAGTTGACTGTGGACA+AGG + Chr1:98390096-98390115 MsG0180005977.01.T01:three_prime_UTR 45.0%
!!! AGTTTTGGTTGGTTGGTGTG+TGG + Chr1:98387427-98387446 MsG0180005977.01.T01:intron 45.0%
!! TAAAAATATTCATAAATTTA+GGG + Chr1:98388601-98388620 MsG0180005977.01.T01:intron 5.0%
!! TTAAAAATATTCATAAATTT+AGG + Chr1:98388600-98388619 MsG0180005977.01.T01:intron 5.0%
AAGGCGCAGCCTAAGTTGTA+AGG - Chr1:98386953-98386972 None:intergenic 50.0%
ACGTGTATGGATAGGAGGTG+GGG - Chr1:98385965-98385984 None:intergenic 50.0%
AGATATGGGAGGAGGAAGCT+GGG + Chr1:98388341-98388360 MsG0180005977.01.T01:intron 50.0%
AGCTTCCTCCTCCCATATCT+AGG - Chr1:98388341-98388360 None:intergenic 50.0%
ATATGAAGGAGCCCTCGATG+GGG - Chr1:98390172-98390191 None:intergenic 50.0%
ATCAGTAACTGTCACACCCG+AGG + Chr1:98389428-98389447 MsG0180005977.01.T01:CDS 50.0%
ATCTGTTGCCGGTAGCAACT+TGG + Chr1:98388296-98388315 MsG0180005977.01.T01:intron 50.0%
ATGTAAGGGCGGCAATGAGA+AGG - Chr1:98390133-98390152 None:intergenic 50.0%
CAAACTTCTCTCACCTTCGC+TGG - Chr1:98387713-98387732 None:intergenic 50.0%
CACCAGCACCAATATTTGGC+AGG - Chr1:98388861-98388880 None:intergenic 50.0%
CAGTGCAAATGCAGCACACA+GGG - Chr1:98388942-98388961 None:intergenic 50.0%
CCACAGACCCTTAAGATAGC+TGG - Chr1:98387507-98387526 None:intergenic 50.0%
CCAGCTATCTTAAGGGTCTG+TGG + Chr1:98387504-98387523 MsG0180005977.01.T01:intron 50.0%
CCCCAAGTGAAATCCAAGGT+AGG - Chr1:98390287-98390306 None:intergenic 50.0%
CTGCCTTCAATACCCTGAGA+GGG + Chr1:98388394-98388413 MsG0180005977.01.T01:intron 50.0%
CTGCTGGAGATTCAGCTTGT+CGG - Chr1:98388632-98388651 None:intergenic 50.0%
GACTGTTACCTGGGGAAAAG+AGG - Chr1:98388770-98388789 None:intergenic 50.0%
GATCTTCACGCGTTACTTGC+GGG - Chr1:98386057-98386076 None:intergenic 50.0%
GCAGCACCAGCACCAATATT+TGG - Chr1:98388865-98388884 None:intergenic 50.0%
GCCTAACGTGTATGGATAGG+AGG - Chr1:98385970-98385989 None:intergenic 50.0%
GCTTGAGGTGAAACAGACAC+TGG - Chr1:98387898-98387917 None:intergenic 50.0%
GGCTGCATCTAATCTGTTGC+CGG + Chr1:98388285-98388304 MsG0180005977.01.T01:CDS 50.0%
GTAGCAGTTGCCGAGGATAT+GGG - Chr1:98388103-98388122 None:intergenic 50.0%
GTATATGAAGGAGCCCTCGA+TGG - Chr1:98390174-98390193 None:intergenic 50.0%
GTTCGTCGAACTCATGCATG+TGG - Chr1:98389962-98389981 None:intergenic 50.0%
TAGATATGGGAGGAGGAAGC+TGG + Chr1:98388340-98388359 MsG0180005977.01.T01:intron 50.0%
TAGCTCGCAATGCTTGGAAC+TGG - Chr1:98389022-98389041 None:intergenic 50.0%
TAGGAGCAGCACTTGTCTGT+GGG - Chr1:98387864-98387883 None:intergenic 50.0%
TATGGATAGGAGGTGGGGTT+TGG - Chr1:98385960-98385979 None:intergenic 50.0%
TCAGTGCAAATGCAGCACAC+AGG - Chr1:98388943-98388962 None:intergenic 50.0%
TCGATGGGGAGGAAATGAGA+AGG - Chr1:98390158-98390177 None:intergenic 50.0%
TCTCATTTCCTCCCCATCGA+GGG + Chr1:98390158-98390177 MsG0180005977.01.T01:three_prime_UTR 50.0%
TGAGGGAAAACCGAGTCTTG+TGG - Chr1:98386308-98386327 None:intergenic 50.0%
TGAGGTGAAACAGACACTGG+GGG - Chr1:98387895-98387914 None:intergenic 50.0%
TGCACAACCTGTGAATCCTG+AGG + Chr1:98388671-98388690 MsG0180005977.01.T01:CDS 50.0%
TGCTGGAGATTCAGCTTGTC+GGG - Chr1:98388631-98388650 None:intergenic 50.0%
TGGGCCTAACGTGTATGGAT+AGG - Chr1:98385973-98385992 None:intergenic 50.0%
TGTTCCCTCCAAGTTGCTAC+CGG - Chr1:98388307-98388326 None:intergenic 50.0%
TTCAAATGCTCCTCCAGCGA+AGG + Chr1:98387697-98387716 MsG0180005977.01.T01:intron 50.0%
TTCAATAGCTTGGCGCTCCT+CGG - Chr1:98389448-98389467 None:intergenic 50.0%
TTCACAGGTTGTGCACTTGC+AGG - Chr1:98388666-98388685 None:intergenic 50.0%
TTCTCATTTCCTCCCCATCG+AGG + Chr1:98390157-98390176 MsG0180005977.01.T01:three_prime_UTR 50.0%
TTTGCGGCGATCGAAGATGA+AGG + Chr1:98386237-98386256 MsG0180005977.01.T01:intron 50.0%
! AGGTTCTGATGTCTATGGGC+AGG + Chr1:98388264-98388283 MsG0180005977.01.T01:CDS 50.0%
! GTTCCAAGCATTGCGAGCTA+TGG + Chr1:98389022-98389041 MsG0180005977.01.T01:intron 50.0%
! TCAAAGGTGTGTCCTGTGTC+CGG - Chr1:98386791-98386810 None:intergenic 50.0%
!! AATATTGGTGCTGGTGCTGC+TGG + Chr1:98388865-98388884 MsG0180005977.01.T01:intron 50.0%
AACCTATGGAGGGCGGAGAA+GGG + Chr1:98389230-98389249 MsG0180005977.01.T01:CDS 55.0%
ACACGTCAAACACCGGACAC+AGG + Chr1:98386776-98386795 MsG0180005977.01.T01:intron 55.0%
ACTTCTCTCACCTTCGCTGG+AGG - Chr1:98387710-98387729 None:intergenic 55.0%
AGCATTGCGAGCTATGGTGC+AGG + Chr1:98389028-98389047 MsG0180005977.01.T01:CDS 55.0%
AGCTCCTGCTCCCATATCCT+CGG + Chr1:98388090-98388109 MsG0180005977.01.T01:CDS 55.0%
AGGAGCAGCACTTGTCTGTG+GGG - Chr1:98387863-98387882 None:intergenic 55.0%
AGGTGAAACAGACACTGGGG+GGG - Chr1:98387893-98387912 None:intergenic 55.0%
CAGCAGCCATCTGTCCCAAT+AGG - Chr1:98389398-98389417 None:intergenic 55.0%
CAGCCCATGCTACAAGAGCT+TGG + Chr1:98389140-98389159 MsG0180005977.01.T01:CDS 55.0%
CCACTTGAGGTAACAGGAGC+AGG - Chr1:98388726-98388745 None:intergenic 55.0%
CCTGCTCCTGTTACCTCAAG+TGG + Chr1:98388723-98388742 MsG0180005977.01.T01:CDS 55.0%
CCTGGGGAAAAGAGGTCTAG+AGG - Chr1:98388762-98388781 None:intergenic 55.0%
CCTTCAATACCCTGAGAGGG+CGG + Chr1:98388397-98388416 MsG0180005977.01.T01:intron 55.0%
CGAAGTCACGCCACAAGACT+CGG + Chr1:98386295-98386314 MsG0180005977.01.T01:intron 55.0%
CGCAGCCTAAGTTGTAAGGC+CGG - Chr1:98386949-98386968 None:intergenic 55.0%
CGTAGCAGTTGCCGAGGATA+TGG - Chr1:98388104-98388123 None:intergenic 55.0%
CTATTGGGACAGATGGCTGC+TGG + Chr1:98389396-98389415 MsG0180005977.01.T01:CDS 55.0%
GAAGGATGGTACCACCTTGG+AGG + Chr1:98387218-98387237 MsG0180005977.01.T01:CDS 55.0%
GAGGTGAAACAGACACTGGG+GGG - Chr1:98387894-98387913 None:intergenic 55.0%
GCAAGTGGGCCTAACGTGTA+TGG - Chr1:98385978-98385997 None:intergenic 55.0%
GCACCATAGCTCGCAATGCT+TGG - Chr1:98389028-98389047 None:intergenic 55.0%
GCTGCCTTCAATACCCTGAG+AGG + Chr1:98388393-98388412 MsG0180005977.01.T01:intron 55.0%
GGCCTGCCAAATATTGGTGC+TGG + Chr1:98388856-98388875 MsG0180005977.01.T01:intron 55.0%
GTAGGAGCAGCACTTGTCTG+TGG - Chr1:98387865-98387884 None:intergenic 55.0%
GTTGCCGGTAGCAACTTGGA+GGG + Chr1:98388300-98388319 MsG0180005977.01.T01:intron 55.0%
TAGTAGACCCTCACCAGACG+CGG - Chr1:98387676-98387695 None:intergenic 55.0%
TCAAGCTCCTGCTGCAACTG+CGG + Chr1:98387912-98387931 MsG0180005977.01.T01:CDS 55.0%
TCAATAGCTTGGCGCTCCTC+GGG - Chr1:98389447-98389466 None:intergenic 55.0%
TCACGCGTTACTTGCGGGAT+TGG - Chr1:98386052-98386071 None:intergenic 55.0%
TGTTGCCGGTAGCAACTTGG+AGG + Chr1:98388299-98388318 MsG0180005977.01.T01:intron 55.0%
! CCTCTAGACCTCTTTTCCCC+AGG + Chr1:98388759-98388778 MsG0180005977.01.T01:CDS 55.0%
! GAAGGTGCAGCAACAGATGC+AGG - Chr1:98388061-98388080 None:intergenic 55.0%
!! GACGGTGGGTTTTGGCAAGT+GGG - Chr1:98385992-98386011 None:intergenic 55.0%
!! TGACGGTGGGTTTTGGCAAG+TGG - Chr1:98385993-98386012 None:intergenic 55.0%
AGTAAGCCCGCGTCTGGTGA+GGG + Chr1:98387666-98387685 MsG0180005977.01.T01:intron 60.0%
AGTAGACCCTCACCAGACGC+GGG - Chr1:98387675-98387694 None:intergenic 60.0%
GAACCTATGGAGGGCGGAGA+AGG + Chr1:98389229-98389248 MsG0180005977.01.T01:CDS 60.0%
GACACTGGGGGGGTTGAAGT+AGG - Chr1:98387883-98387902 None:intergenic 60.0%
GAGGATATGGGAGCAGGAGC+TGG - Chr1:98388091-98388110 None:intergenic 60.0%
GCAGTTGCAGCAGGAGCTTG+AGG - Chr1:98387913-98387932 None:intergenic 60.0%
GCTGCAGCCTCAGGATTCAC+AGG - Chr1:98388681-98388700 None:intergenic 60.0%
GGGAGGAGGAAGCTGGGATA+GGG + Chr1:98388347-98388366 MsG0180005977.01.T01:intron 60.0%
GTTGCCGAGGATATGGGAGC+AGG - Chr1:98388097-98388116 None:intergenic 60.0%
GTTGTGCACTTGCAGGCGCT+CGG - Chr1:98388659-98388678 None:intergenic 60.0%
TGGGAGGAGGAAGCTGGGAT+AGG + Chr1:98388346-98388365 MsG0180005977.01.T01:intron 60.0%
TTGTGCACTTGCAGGCGCTC+GGG - Chr1:98388658-98388677 None:intergenic 60.0%
!! CCGCCCTCTCAGGGTATTGA+AGG - Chr1:98388400-98388419 None:intergenic 60.0%
ATGGGAGCAGGAGCTGGAGC+TGG - Chr1:98388085-98388104 None:intergenic 65.0%
CACCCTTCTCCGCCCTCCAT+AGG - Chr1:98389235-98389254 None:intergenic 65.0%
GAGTAAGCCCGCGTCTGGTG+AGG + Chr1:98387665-98387684 MsG0180005977.01.T01:intron 65.0%
GGAGCAGGCTGAGCTGCTTG+TGG - Chr1:98388711-98388730 None:intergenic 65.0%
TGAAGGAGCCCTCGATGGGG+AGG - Chr1:98390169-98390188 None:intergenic 65.0%
TGGCAGAGTAAGCCCGCGTC+TGG + Chr1:98387660-98387679 MsG0180005977.01.T01:intron 65.0%
TGGGAGCAGGAGCTGGAGCT+GGG - Chr1:98388084-98388103 None:intergenic 65.0%
!! GTGCTGCTGGTGCCGTTCTC+TGG + Chr1:98388878-98388897 MsG0180005977.01.T01:intron 65.0%
GCAGGAGCTGGAGCTGGGGA+AGG - Chr1:98388079-98388098 None:intergenic 70.0%
GGAGCTGCAGCTGCAGCCTC+AGG - Chr1:98388690-98388709 None:intergenic 70.0%
GGGAGCAGGAGCTGGAGCTG+GGG - Chr1:98388083-98388102 None:intergenic 70.0%
!! CACGGTGCCGCAGTTGCAGC+AGG - Chr1:98387922-98387941 None:intergenic 70.0%
GCAGGCGCTCGGGACACTGC+TGG - Chr1:98388648-98388667 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 98385851 98390308 98385851 ID=MsG0180005977.01;Name=MsG0180005977.01
Chr1 mRNA 98385851 98390308 98385851 ID=MsG0180005977.01.T01;Parent=MsG0180005977.01;Name=MsG0180005977.01.T01;_AED=0.45;_eAED=0.45;_QI=0|0.44|0.6|0.9|1|1|10|322|324
Chr1 exon 98385851 98385875 98385851 ID=MsG0180005977.01.T01:exon:10916;Parent=MsG0180005977.01.T01
Chr1 exon 98387127 98387287 98387127 ID=MsG0180005977.01.T01:exon:10917;Parent=MsG0180005977.01.T01
Chr1 exon 98387859 98387938 98387859 ID=MsG0180005977.01.T01:exon:10918;Parent=MsG0180005977.01.T01
Chr1 exon 98388057 98388122 98388057 ID=MsG0180005977.01.T01:exon:10919;Parent=MsG0180005977.01.T01
Chr1 exon 98388261 98388306 98388261 ID=MsG0180005977.01.T01:exon:10920;Parent=MsG0180005977.01.T01
Chr1 exon 98388494 98388500 98388494 ID=MsG0180005977.01.T01:exon:10921;Parent=MsG0180005977.01.T01
Chr1 exon 98388622 98388780 98388622 ID=MsG0180005977.01.T01:exon:10922;Parent=MsG0180005977.01.T01
Chr1 exon 98389023 98389251 98389023 ID=MsG0180005977.01.T01:exon:10923;Parent=MsG0180005977.01.T01
Chr1 exon 98389389 98389470 98389389 ID=MsG0180005977.01.T01:exon:10924;Parent=MsG0180005977.01.T01
Chr1 exon 98389867 98390308 98389867 ID=MsG0180005977.01.T01:exon:10925;Parent=MsG0180005977.01.T01
Chr1 CDS 98385851 98385875 98385851 ID=MsG0180005977.01.T01:cds;Parent=MsG0180005977.01.T01
Chr1 CDS 98387127 98387287 98387127 ID=MsG0180005977.01.T01:cds;Parent=MsG0180005977.01.T01
Chr1 CDS 98387859 98387938 98387859 ID=MsG0180005977.01.T01:cds;Parent=MsG0180005977.01.T01
Chr1 CDS 98388057 98388122 98388057 ID=MsG0180005977.01.T01:cds;Parent=MsG0180005977.01.T01
Chr1 CDS 98388261 98388306 98388261 ID=MsG0180005977.01.T01:cds;Parent=MsG0180005977.01.T01
Chr1 CDS 98388494 98388500 98388494 ID=MsG0180005977.01.T01:cds;Parent=MsG0180005977.01.T01
Chr1 CDS 98388622 98388780 98388622 ID=MsG0180005977.01.T01:cds;Parent=MsG0180005977.01.T01
Chr1 CDS 98389023 98389251 98389023 ID=MsG0180005977.01.T01:cds;Parent=MsG0180005977.01.T01
Chr1 CDS 98389389 98389470 98389389 ID=MsG0180005977.01.T01:cds;Parent=MsG0180005977.01.T01
Chr1 CDS 98389867 98389986 98389867 ID=MsG0180005977.01.T01:cds;Parent=MsG0180005977.01.T01
Chr1 three_prime_UTR 98389987 98390308 98389987 ID=MsG0180005977.01.T01:three_prime_utr;Parent=MsG0180005977.01.T01
Gene Sequence

>MsG0180005977.01.T01

ATGTCATCGGAGAGAATCCAAATCCATTTCCGCAGTCAAGAAAAATATAGAAACCGTTCAGGTGTAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGGAAAGTTTTGAAGGATGGTACCACCTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTCATTGTGATCATGCTTTCAAAGGCCCCACAGACAAGTGCTGCTCCTACTTCAACCCCCCCAGTGTCTGTTTCACCTCAAGCTCCTGCTGCAACTGCGGCACCGCCTGCATCTGTTGCTGCACCTTCCCCAGCTCCAGCTCCTGCTCCCATATCCTCGGCAACTGCTACGGAAGGTTCTGATGTCTATGGGCAGGCTGCATCTAATCTGTTGCCGTTACCGGGGTATACCCGACAAGCTGAATCTCCAGCAGTGTCCCGAGCGCCTGCAAGTGCACAACCTGTGAATCCTGAGGCTGCAGCTGCAGCTCCACAAGCAGCTCAGCCTGCTCCTGTTACCTCAAGTGGACCTAATGCTAATCCTCTAGACCTCTTTTCCCCAGTTCCAAGCATTGCGAGCTATGGTGCAGGCAATCCACAAATATTGCAGGTTTCTTCTCACCTTAGTAGTTATGTCTTATATTCTCTTCTTGTGGATTTCCCTGATTCTGTTATTGCTGCAGCCCATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGGATCATCAGGCTGACTTCCTTCGCCTGATTAACGAACCTATGGAGGGCGGAGAAGGGAACAACCTATTGGGACAGATGGCTGCTGGCATGCCACAATCAGTAACTGTCACACCCGAGGAGCGCCAAGCTATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCTATAGTATTGGAGGTGTTCTTTGCTTGCAACAAAAATGAGGAATTGGCCGCCAACTACCTTTTAGACCACATGCATGAGTTCGACGAACAATGA
Protein sequence

>MsG0180005977.01.T01

MSSERIQIHFRSQEKYRNRSGVDVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKAPQTSAAPTSTPPVSVSPQAPAATAAPPASVAAPSPAPAPAPISSATATEGSDVYGQAASNLLPLPGYTRQAESPAVSRAPASAQPVNPEAAAAAPQAAQPAPVTSSGPNANPLDLFSPVPSIASYGAGNPQILQVSSHLSSYVLYSLLVDFPDSVIAAAHATRAWQTKSSSYEIDSDHQADFLRLINEPMEGGEGNNLLGQMAAGMPQSVTVTPEERQAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFDEQ*