AlfalfaGEDB | MsG0180006221.01

M. sativa cultivar ZhongmuNo.1 / MsG0180006221.01

KEGG: K11000
GO: GO:0000148 GO:0003843 GO:0006075 GO:0016020
PFAM: PF02364

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006221.01.T01	XP_024628953.1	89.336	572	27	3	68	610	747	1313	0	1025
MsG0180006221.01.T01	XP_024628953.1	74.346	191	20	2	606	767	1453	1643	4.46E-69	264
MsG0180006221.01.T01	XP_024628953.1	83.333	150	24	1	783	931	1806	1955	1.06E-62	244
MsG0180006221.01.T01	XP_024628953.1	65.333	75	21	1	1	70	553	627	1.18E-16	98.6
MsG0180006221.01.T02	XP_024628953.1	89.336	572	27	3	68	610	747	1313	0	1025
MsG0180006221.01.T02	XP_024628953.1	74.346	191	20	2	606	767	1453	1643	4.46E-69	264
MsG0180006221.01.T02	XP_024628953.1	83.333	150	24	1	783	931	1806	1955	1.06E-62	244
MsG0180006221.01.T02	XP_024628953.1	65.333	75	21	1	1	70	553	627	1.18E-16	98.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006221.01.T01	Q9LXT9	74.606	571	103	8	68	604	745	1307	0	827
MsG0180006221.01.T02	Q9LXT9	74.606	571	103	8	68	604	745	1307	0	827

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006221.01.T01	A0A396K4U1	89.336	572	27	3	68	610	747	1313	0.0	1025
MsG0180006221.01.T02	A0A396K4U1	89.336	572	27	3	68	610	747	1313	0.0	1025

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180006221.01	MsG0280009794.01	0.822328	2.512573e-53	2.096461e-50
MsG0180006221.01	MsG0280010015.01	0.800353	1.499708e-48	6.968129e-46
MsG0180006221.01	MsG0280011089.01	0.830601	2.679776e-55	2.836815e-52
MsG0180006221.01	MsG0280011416.01	0.834650	2.651750e-56	3.166744e-53
MsG0180006221.01	MsG0380016247.01	0.813554	2.413853e-51	1.581327e-48
MsG0180006221.01	MsG0380016920.01	0.804726	1.880858e-49	9.770781e-47
MsG0180006221.01	MsG0380017159.01	0.822895	1.854255e-53	1.572299e-50
MsG0180006221.01	MsG0480019922.01	0.810665	1.029818e-50	6.245462e-48
MsG0180006221.01	MsG0480020699.01	0.807166	5.772668e-50	3.192591e-47
MsG0180006221.01	MsG0480023463.01	0.833078	6.556706e-56	7.470686e-53

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006221.01.T01	MTR_1g116370	89.336	572	27	3	68	610	733	1299	0.0	1025
MsG0180006221.01.T01	MTR_1g116370	74.346	191	20	2	606	767	1439	1629	5.89e-73	264
MsG0180006221.01.T01	MTR_1g116370	83.333	150	24	1	783	931	1792	1941	1.38e-66	244
MsG0180006221.01.T01	MTR_1g116370	97.778	45	1	0	1	45	553	597	2.95e-20	97.8
MsG0180006221.01.T01	MTR_7g005950	76.857	579	91	8	68	610	744	1315	0.0	828
MsG0180006221.01.T01	MTR_7g005950	72.251	191	24	2	606	767	1455	1645	5.18e-71	258
MsG0180006221.01.T01	MTR_7g005950	57.073	205	76	3	728	931	1765	1958	2.51e-57	216
MsG0180006221.01.T01	MTR_7g005950	77.778	45	10	0	1	45	550	594	4.88e-16	84.0
MsG0180006221.01.T01	MTR_7g005950	77.123	577	89	8	70	610	746	1315	0.0	828
MsG0180006221.01.T01	MTR_7g005950	72.251	191	24	2	606	767	1455	1645	5.38e-71	258

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006221.01.T01	AT5G13000	74.606	571	103	8	68	604	745	1307	0.0	827
MsG0180006221.01.T01	AT5G13000	70.681	191	27	2	606	767	1453	1643	6.40e-70	254
MsG0180006221.01.T01	AT5G13000	69.655	145	43	1	788	931	1811	1955	4.16e-55	209
MsG0180006221.01.T01	AT5G13000	66.667	45	15	0	1	45	551	595	3.68e-13	74.7
MsG0180006221.01.T01	AT5G13000	73.462	569	107	8	68	599	745	1306	0.0	810
MsG0180006221.01.T01	AT5G13000	70.681	191	27	2	606	767	1433	1623	6.91e-70	254
MsG0180006221.01.T01	AT5G13000	68.067	119	37	1	814	931	1796	1914	1.04e-41	167
MsG0180006221.01.T01	AT5G13000	66.667	45	15	0	1	45	551	595	3.96e-13	74.7
MsG0180006221.01.T01	AT1G05570	63.763	574	165	7	71	610	702	1266	0.0	721
MsG0180006221.01.T01	AT1G05570	65.969	191	36	2	606	767	1406	1596	1.28e-63	235

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Find 52 sgRNAs with CRISPR-Local

Find 927 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAACCAGGCCAGGA+AGG	0.526667	1:+101538997	None:intergenic
AACCAGGCCAGGAAGGCAAC+AGG	0.417081	1:+101539004	None:intergenic
AACTCTAGCACGTGGTTATG+AGG	0.440774	1:-101539053	MsG0180006221.01.T01:CDS
AAGCCTCTAGTACGCCGAGG+TGG	0.666585	1:-101539094	MsG0180006221.01.T01:CDS
AAGGCGGCTTAAACCATATA+TGG	0.314949	1:-101538851	MsG0180006221.01.T01:three_prime_UTR
AATCCACCTCGGCGTACTAG+AGG	0.612482	1:+101539091	None:intergenic
ACCGTCCAATCAAGATCAGA+CGG	0.613681	1:-101538570	MsG0180006221.01.T01:three_prime_UTR
ACCGTCTGATCTTGATTGGA+CGG	0.547981	1:+101538569	None:intergenic
ACGTGGTTATGAGGTTATCA+TGG	0.436721	1:-101539044	MsG0180006221.01.T01:CDS
AGACAAAAGGAAACCAGGCC+AGG	0.487934	1:+101538993	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTCAGATGATAACTCA+AGG	-	Chr1:101545738-101545757	MsG0180006221.01.T01:intron	30.0%
AAACATGTAAACCCACTAAT+TGG	+	Chr1:101545947-101545966	None:intergenic	30.0%
AAACTCAGATGATAACTCAA+GGG	-	Chr1:101545739-101545758	MsG0180006221.01.T01:intron	30.0%
AAACTTCAGCATGATATGAA+AGG	+	Chr1:101542856-101542875	None:intergenic	30.0%
AAAGAGGAAAAAAATACCAC+AGG	-	Chr1:101546255-101546274	MsG0180006221.01.T01:intron	30.0%
AAATGCTTTGCTCATATTCA+TGG	+	Chr1:101550290-101550309	None:intergenic	30.0%
AACAGACAAACAGAATGAAA+AGG	+	Chr1:101539387-101539406	None:intergenic	30.0%
AACATTTGCAGTTGAAAATG+AGG	-	Chr1:101540707-101540726	MsG0180006221.01.T01:CDS	30.0%
AAGAAAGATTTAGAGGACTA+TGG	-	Chr1:101544728-101544747	MsG0180006221.01.T01:intron	30.0%
AAGTACCAAGGATTCTAATA+CGG	+	Chr1:101549805-101549824	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	101538449	101551193	101538449	ID=MsG0180006221.01;Name=MsG0180006221.01
Chr1	mRNA	101538449	101551193	101538449	ID=MsG0180006221.01.T01;Parent=MsG0180006221.01;Name=MsG0180006221.01.T01;_AED=0.47;_eAED=0.48;_QI=0\|0.68\|0.65\|1\|0.84\|0.7\|20\|323\|931
Chr1	exon	101538449	101538627	101538449	ID=MsG0180006221.01.T01:exon:15112;Parent=MsG0180006221.01.T01
Chr1	exon	101538742	101539131	101538742	ID=MsG0180006221.01.T01:exon:15111;Parent=MsG0180006221.01.T01
Chr1	CDS	101551034	101551193	101551034	ID=MsG0180006221.01.T01:cds;Parent=MsG0180006221.01.T01
Chr1	CDS	101549634	101549719	101549634	ID=MsG0180006221.01.T01:cds;Parent=MsG0180006221.01.T01
Chr1	CDS	101548528	101548662	101548528	ID=MsG0180006221.01.T01:cds;Parent=MsG0180006221.01.T01
Chr1	CDS	101548345	101548439	101548345	ID=MsG0180006221.01.T01:cds;Parent=MsG0180006221.01.T01
Chr1	CDS	101548143	101548227	101548143	ID=MsG0180006221.01.T01:cds;Parent=MsG0180006221.01.T01
Chr1	CDS	101547868	101548066	101547868	ID=MsG0180006221.01.T01:cds;Parent=MsG0180006221.01.T01
Chr1	CDS	101547524	101547624	101547524	ID=MsG0180006221.01.T01:cds;Parent=MsG0180006221.01.T01
Chr1	CDS	101547332	101547432	101547332	ID=MsG0180006221.01.T01:cds;Parent=MsG0180006221.01.T01
Chr1	CDS	101547116	101547248	101547116	ID=MsG0180006221.01.T01:cds;Parent=MsG0180006221.01.T01
Chr1	CDS	101546876	101547027	101546876	ID=MsG0180006221.01.T01:cds;Parent=MsG0180006221.01.T01
Chr1	CDS	101544490	101544599	101544490	ID=MsG0180006221.01.T01:cds;Parent=MsG0180006221.01.T01
Chr1	CDS	101544274	101544399	101544274	ID=MsG0180006221.01.T01:cds;Parent=MsG0180006221.01.T01
Chr1	CDS	101544077	101544145	101544077	ID=MsG0180006221.01.T01:cds;Parent=MsG0180006221.01.T01
Chr1	CDS	101543746	101543845	101543746	ID=MsG0180006221.01.T01:cds;Parent=MsG0180006221.01.T01
Chr1	CDS	101543503	101543663	101543503	ID=MsG0180006221.01.T01:cds;Parent=MsG0180006221.01.T01
Chr1	CDS	101541141	101541286	101541141	ID=MsG0180006221.01.T01:cds;Parent=MsG0180006221.01.T01
Chr1	CDS	101540562	101540966	101540562	ID=MsG0180006221.01.T01:cds;Parent=MsG0180006221.01.T01
Chr1	CDS	101539417	101539602	101539417	ID=MsG0180006221.01.T01:cds;Parent=MsG0180006221.01.T01
Chr1	CDS	101538886	101539131	101538886	ID=MsG0180006221.01.T01:cds;Parent=MsG0180006221.01.T01
Chr1	three_prime_UTR	101538742	101538885	101538742	ID=MsG0180006221.01.T01:three_prime_utr;Parent=MsG0180006221.01.T01
Chr1	three_prime_UTR	101538449	101538627	101538449	ID=MsG0180006221.01.T01:three_prime_utr;Parent=MsG0180006221.01.T01
Chr1	mRNA	101538536	101551193	101538536	ID=MsG0180006221.01.T02;Parent=MsG0180006221.01;Name=MsG0180006221.01.T02;_AED=0.47;_eAED=0.48;_QI=0\|0.66\|0.63\|1\|0.88\|0.78\|19\|350\|931
Chr1	exon	101538536	101539131	101538536	ID=MsG0180006221.01.T02:exon:15113;Parent=MsG0180006221.01.T02
Chr1	CDS	101551034	101551193	101551034	ID=MsG0180006221.01.T02:cds;Parent=MsG0180006221.01.T02
Chr1	CDS	101549634	101549719	101549634	ID=MsG0180006221.01.T02:cds;Parent=MsG0180006221.01.T02
Chr1	CDS	101548528	101548662	101548528	ID=MsG0180006221.01.T02:cds;Parent=MsG0180006221.01.T02
Chr1	CDS	101548345	101548439	101548345	ID=MsG0180006221.01.T02:cds;Parent=MsG0180006221.01.T02
Chr1	CDS	101548143	101548227	101548143	ID=MsG0180006221.01.T02:cds;Parent=MsG0180006221.01.T02
Chr1	CDS	101547868	101548066	101547868	ID=MsG0180006221.01.T02:cds;Parent=MsG0180006221.01.T02
Chr1	CDS	101547524	101547624	101547524	ID=MsG0180006221.01.T02:cds;Parent=MsG0180006221.01.T02
Chr1	CDS	101547332	101547432	101547332	ID=MsG0180006221.01.T02:cds;Parent=MsG0180006221.01.T02
Chr1	CDS	101547116	101547248	101547116	ID=MsG0180006221.01.T02:cds;Parent=MsG0180006221.01.T02
Chr1	CDS	101546876	101547027	101546876	ID=MsG0180006221.01.T02:cds;Parent=MsG0180006221.01.T02
Chr1	CDS	101544490	101544599	101544490	ID=MsG0180006221.01.T02:cds;Parent=MsG0180006221.01.T02
Chr1	CDS	101544274	101544399	101544274	ID=MsG0180006221.01.T02:cds;Parent=MsG0180006221.01.T02
Chr1	CDS	101544077	101544145	101544077	ID=MsG0180006221.01.T02:cds;Parent=MsG0180006221.01.T02
Chr1	CDS	101543746	101543845	101543746	ID=MsG0180006221.01.T02:cds;Parent=MsG0180006221.01.T02
Chr1	CDS	101543503	101543663	101543503	ID=MsG0180006221.01.T02:cds;Parent=MsG0180006221.01.T02
Chr1	CDS	101541141	101541286	101541141	ID=MsG0180006221.01.T02:cds;Parent=MsG0180006221.01.T02
Chr1	CDS	101540562	101540966	101540562	ID=MsG0180006221.01.T02:cds;Parent=MsG0180006221.01.T02
Chr1	CDS	101539417	101539602	101539417	ID=MsG0180006221.01.T02:cds;Parent=MsG0180006221.01.T02
Chr1	CDS	101538886	101539131	101538886	ID=MsG0180006221.01.T02:cds;Parent=MsG0180006221.01.T02
Chr1	three_prime_UTR	101538536	101538885	101538536	ID=MsG0180006221.01.T02:three_prime_utr;Parent=MsG0180006221.01.T02

Gene Sequence

>MsG0180006221.01.T02

ATGTCAATGCATGCTAAGTTAAGATACATTCTAAAAGTCGTTTCAGGTGCAGCATGGGTGATTGTTTTATCTGTCACTTATGCTTATACTTGGGACAATCCTCCTGGCTTTGCTCAATCCATCCAAAGTTGGTTGGAAGCAATTCTCATTCGCCTTCAATGTCTACTTCATGGATACCCAGATTTGGTATGCCATATTCTCAACTTTTTTGGTGGTATTTATGGAGCATTCCGTCGTCTCGGTGAGATAAGGACACTGGGAATGCTTAGATCTCGTTTTGAATCATTGCCTGGTGCCTTTAATGCCTGTTTGATCCCAGAGGAAAAGAGTGAGCCAAGAAAGAAAGGATTAAAAGCAACTTTATCTCGCAGATTTGACCAGATCCCATCTAACAAGGGTAAGGAAGCAGCAAGATTTGCACAACTTTGGAACCAAATTATCACTAGTTTTAGAGAGGAAGATCTTATCAGTAATAGGGAAATGGACCTTTTGCTTGTGCCTTATTGGGCCGATCCCGAGTTAGACCTAATACAATGGCCACCATTTCTACTTGCTAGCAAGATTCCAATTGCGTTGGATATGGCTAAGGATAGCAATGGAAAGGATCGAGAGCTGAGAAAAAGAATAGAGTTCGACAACTATATGTCTTGTGCTGTTCGGGAGTGTTATGCTTCATTTAGAGTATTATTAGGTACTTGGTTCAAGGGGATCGTGAGAAACAGTAAGTCCTTCAAAACAGTGCCATGCAGTTGTTTACTTGAGGTAGACAAACATATTGAAGCTGGTGATCTAATAAGTGAATTCAAACTGAGTGCGCTTCCTAGCCTCTATGGGCAATTTGTTGCGCTAATCAAATATTTGCTGGACAATAAGCACGAAGACAGGGACCAAGTTGTGATTCTATTCCAGGACATGCTGGAGGTGGTGACAAGGGATATAATGATGGAGGATCATCTACTCAGCTTGGTAGATTCAATCCATGGAGGATCTGGACAAGAGGGGATGCTTCTTCTTGAGCAGCAACACCAGTTATTTGCATCTGAAGGGGCAATCAGGTTTCCAATTGAACCTGTTACAGAAGCTTGGACAGAGAAGATTAAACGCCTTCACCTTCTGCTTACAACAAAAGAATCAGCAATGGATGTACCATCTAACTTAGAAGCCAAAAGGCGTATTTCGTTTTTCTCAAATTCACTGTTTATGGACATGCCTACAGCACCCAAAGTTCGCAACATGCTGTCATTCTCGGTTTTAACTCCATACTACACAGAAGAGGTTCTCTTTTCTTTGCGTGAGTTGGAGTCACCCAATGAAGATGGTGTTTCAATACTTTTCTACTTACAAAAGATCTTTCCAGATGAATGGAACAACTTTCTGCAGCGAGTGAATTGTTCCAACGAAGAGGAACTTAAAGAATATGATGAGTTAGAAGAAGAGCTTCGTCGCTGGGCATCATACCGAGGACAAACTTTGACCAGAACTGTTAGAGGAATGATGTACTACAGAAAAGCCTTGGAGCTCCAGGCTTTTCTCGATATGGCCAAAGATGAAGCTGATATGAAATTCTCATATGTGGTATCGTGCCAACAATATGGGATTGACAAGCGATCTGGTGCTGCTCGTGCACAGGACATATTGAGGCTTATGGCAAGATATCCTTCACTCCGAGTCGCCTATATTGACGAGGTAGAGGAACCTAGCAAAGAGAGACCAAAAAGGATCAGCAAGGTTTATTACTCCTGCTTGGTGAAGGCTATGCCAAAATCCAGTAGTCCCTCCGAGACAGAGCCCGAGCAATGTTTGGACCAGGTAAGGTTTAATTCTACCCTTCGCGAAGGAAATGTTACTCATCATGAGTACATACAAGTTGGGAAAGGAAGAGATGTGGTCTCAACCAGATTTCTATGTTTTGAAGCAAAGATAGCTAATGGCAATGGAGAGCAAACACTGAGTCGAGATATTACTGTTCTCACTGTGTATGTATTCCTCTATGGTCGCCTTTATCTTGTTCTTAGTGGGCTTGAAGAAGGTTTGAGTACACAGAAAGCCATTCGAGATAATAAGCCTCTTCAAGTGGCTCTCGCATCACAGTCCTTTGTTCAAATTGGGTTTTTTGATGGCTTTGCCTATGTTGATGGAAATCGGCTTGGAAAGGGATTCCGAACTGCTCTTAGTGAGTTCATATTAATGCAGTTGCAGTTGGCTCCAGTTTTCTTCACATTTTCGCTTGGGACAAAGACTCACTATTATGGAACGTTGCTTCATGGAGGTGCAAAATATAGACCTACTGGCCGAGGTTTTGGGTTTTCCATGCTAAATTTGCTGACAACTATAGACTTTACTCCCGTAGCCACTTTGTCAAGGACGGTGTCTGTTGGGAGAAGGAAATTTAGTGCAGATTTTCAACTTGTCTTCCGGCTAATGAAGGGATTAGTATTCGTGACTTTTGTCTCAATTCTAGTGACCATGATTGCCCTTGCTCACATGACATTGCAGGACATTGTTGTTTGCATTCTTGCCTTCATGCCAACTGGTTGGGGAATGCTACAGATTGCACAAGCATTAAAGCCTCTAGTACGCCGAGGTGGATTTTGGGAATCAGTAAAAACTCTAGCACGTGGTTATGAGGTTATCATGGGTTTGCTCTTGTTCACTCCTGTTGCCTTCCTGGCCTGGTTTCCTTTTGTCTCAGAATTTCAGACACTATGCTTTTCAATCAAGCATTTAGCCGAGGTTTACAATTTCTCGTATTCTTGGGGCCCAAGGAAGGGTCGCTCCTCTCGCAACAAGGAATAG

>MsG0180006221.01.T01

Protein sequence

>MsG0180006221.01.T02

MSMHAKLRYILKVVSGAAWVIVLSVTYAYTWDNPPGFAQSIQSWLEAILIRLQCLLHGYPDLVCHILNFFGGIYGAFRRLGEIRTLGMLRSRFESLPGAFNACLIPEEKSEPRKKGLKATLSRRFDQIPSNKGKEAARFAQLWNQIITSFREEDLISNREMDLLLVPYWADPELDLIQWPPFLLASKIPIALDMAKDSNGKDRELRKRIEFDNYMSCAVRECYASFRVLLGTWFKGIVRNSKSFKTVPCSCLLEVDKHIEAGDLISEFKLSALPSLYGQFVALIKYLLDNKHEDRDQVVILFQDMLEVVTRDIMMEDHLLSLVDSIHGGSGQEGMLLLEQQHQLFASEGAIRFPIEPVTEAWTEKIKRLHLLLTTKESAMDVPSNLEAKRRISFFSNSLFMDMPTAPKVRNMLSFSVLTPYYTEEVLFSLRELESPNEDGVSILFYLQKIFPDEWNNFLQRVNCSNEEELKEYDELEEELRRWASYRGQTLTRTVRGMMYYRKALELQAFLDMAKDEADMKFSYVVSCQQYGIDKRSGAARAQDILRLMARYPSLRVAYIDEVEEPSKERPKRISKVYYSCLVKAMPKSSSPSETEPEQCLDQVRFNSTLREGNVTHHEYIQVGKGRDVVSTRFLCFEAKIANGNGEQTLSRDITVLTVYVFLYGRLYLVLSGLEEGLSTQKAIRDNKPLQVALASQSFVQIGFFDGFAYVDGNRLGKGFRTALSEFILMQLQLAPVFFTFSLGTKTHYYGTLLHGGAKYRPTGRGFGFSMLNLLTTIDFTPVATLSRTVSVGRRKFSADFQLVFRLMKGLVFVTFVSILVTMIALAHMTLQDIVVCILAFMPTGWGMLQIAQALKPLVRRGGFWESVKTLARGYEVIMGLLLFTPVAFLAWFPFVSEFQTLCFSIKHLAEVYNFSYSWGPRKGRSSRNKE*

>MsG0180006221.01.T01