AlfalfaGEDB | MsG0280006601.01

M. sativa cultivar ZhongmuNo.1 / MsG0280006601.01

KEGG: K15601
GO: GO:0005515
PFAM: PF02373 PF08879

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006601.01.T01	XP_013462466.1	94.087	964	26	5	1	934	1	963	0	1853

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006601.01.T01	Q9SSE9	34.03	526	247	11	435	924	429	890	2.44E-77	276

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006601.01.T01	A0A072V3U7	94.087	964	26	5	1	934	1	963	0.0	1853

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047944.01	MsG0280006601.01	0.815380	9.523484e-52	6.555477e-49
MsG0080047957.01	MsG0280006601.01	0.839790	1.283609e-57	1.791924e-54
MsG0080047958.01	MsG0280006601.01	0.800701	1.273955e-48	5.971333e-46
MsG0080047959.01	MsG0280006601.01	0.815883	7.359037e-52	5.135668e-49
MsG0080048404.01	MsG0280006601.01	0.807327	5.335392e-50	2.963265e-47
MsG0080048461.01	MsG0280006601.01	0.828420	9.081780e-55	9.022528e-52
MsG0080048462.01	MsG0280006601.01	0.816396	5.650847e-52	3.999501e-49
MsG0080048463.01	MsG0280006601.01	0.811488	6.828387e-51	4.232515e-48
MsG0080048464.01	MsG0280006601.01	0.846413	2.206831e-59	3.795544e-56
MsG0080048683.01	MsG0280006601.01	0.822079	2.869004e-53	2.376785e-50

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006601.01.T01	MTR_2g011630	94.087	964	26	5	1	934	1	963	0.0	1853
MsG0280006601.01.T01	MTR_2g011630	92.165	702	26	3	261	934	51	751	0.0	1333
MsG0280006601.01.T01	MTR_2g011630	92.165	702	26	3	261	934	19	719	0.0	1332
MsG0280006601.01.T01	MTR_4g091520	61.331	556	164	6	423	928	725	1279	0.0	677
MsG0280006601.01.T01	MTR_4g091520	50.000	508	180	12	1	442	1	500	4.94e-127	415
MsG0280006601.01.T01	MTR_4g091520	58.030	467	145	6	423	839	655	1120	7.90e-171	528
MsG0280006601.01.T01	MTR_4g091520	50.000	508	180	12	1	442	1	500	3.79e-128	415
MsG0280006601.01.T01	MTR_4g091520	58.030	467	145	6	423	839	690	1155	1.31e-170	528
MsG0280006601.01.T01	MTR_4g091520	50.000	508	180	12	1	442	1	500	6.64e-128	415
MsG0280006601.01.T01	MTR_4g091520	58.030	467	145	6	423	839	725	1190	2.28e-170	529

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006601.01.T01	AT4G21430	37.487	995	473	23	6	930	2	917	0.0	595
MsG0280006601.01.T01	AT4G00990	34.640	791	424	20	198	927	73	831	1.35e-136	429
MsG0280006601.01.T01	AT1G11950	35.391	729	414	14	205	927	193	870	5.08e-130	413
MsG0280006601.01.T01	AT1G11950	35.391	729	414	14	205	927	193	870	5.08e-130	413
MsG0280006601.01.T01	AT1G62310	33.797	790	400	18	170	914	172	883	1.38e-125	402
MsG0280006601.01.T01	AT4G00990	33.973	730	389	20	198	866	73	770	1.04e-115	372
MsG0280006601.01.T01	AT4G00990	33.973	730	389	20	198	866	73	770	1.73e-115	372
MsG0280006601.01.T01	AT1G09060	29.278	970	540	27	12	932	25	897	1.94e-110	362
MsG0280006601.01.T01	AT1G09060	29.278	970	540	27	12	932	25	897	1.94e-110	362
MsG0280006601.01.T01	AT1G09060	29.278	970	540	27	12	932	39	911	3.84e-110	362

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Find 162 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAATACATGTTCTGG+AGG	0.643807	2:-3936424	None:intergenic
AAAACTAAGTTGGGATCCTC+TGG	0.488482	2:+3933714	MsG0280006601.01.T01:CDS
AAACTCGTAAAGATCTAGCA+AGG	0.642984	2:+3936466	MsG0280006601.01.T01:three_prime_UTR
AAACTGTTCTTTGAATAGTT+GGG	0.497020	2:-3934193	None:intergenic
AAATGCTCTTGTCTTCTAAA+AGG	0.324737	2:-3933267	None:intergenic
AAATGTATTCTGTTGCTCAG+TGG	0.670307	2:+3935407	MsG0280006601.01.T01:CDS
AAATTCAGAAGACCGAACCT+CGG	0.675191	2:-3934270	None:intergenic
AACCACCTAGCTCTGAAGGA+GGG	0.641948	2:-3933366	None:intergenic
AACGAAGGAAGAATGTCCAC+CGG	0.642524	2:+3931138	MsG0280006601.01.T01:CDS
AACTGATACGTCAATGTTGC+TGG	0.394642	2:+3933303	MsG0280006601.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGCTCTTGTCTTCTAAA+AGG	-	Chr2:3933270-3933289	None:intergenic	30.0%
AACTGGTATAGAAGTTATCA+TGG	-	Chr2:3932376-3932395	None:intergenic	30.0%
AATTATCTGACGAAGTACAA+TGG	-	Chr2:3935002-3935021	None:intergenic	30.0%
ACAATAATATAAGATGCAGC+GGG	-	Chr2:3934747-3934766	None:intergenic	30.0%
ACTCAAACAAGATCATGTTA+AGG	-	Chr2:3935559-3935578	None:intergenic	30.0%
ACTTCGAAATTATACACTTC+TGG	+	Chr2:3935950-3935969	MsG0280006601.01.T01:intron	30.0%
ATACCAGATTAGGAATTCTA+AGG	+	Chr2:3935833-3935852	MsG0280006601.01.T01:CDS	30.0%
ATCATCTTCAACTTCAACAT+CGG	+	Chr2:3931245-3931264	MsG0280006601.01.T01:CDS	30.0%
ATGAAAACAGGTGAAGAAAA+TGG	+	Chr2:3936308-3936327	MsG0280006601.01.T01:intron	30.0%
ATTATAGTGAAGGTGAATTG+AGG	+	Chr2:3931521-3931540	MsG0280006601.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	3931124	3936613	3931124	ID=MsG0280006601.01;Name=MsG0280006601.01
Chr2	mRNA	3931124	3936613	3931124	ID=MsG0280006601.01.T01;Parent=MsG0280006601.01;Name=MsG0280006601.01.T01;_AED=0.48;_eAED=0.48;_QI=0\|0.45\|0.41\|1\|1\|1\|12\|215\|934
Chr2	exon	3931124	3931708	3931124	ID=MsG0280006601.01.T01:exon:887;Parent=MsG0280006601.01.T01
Chr2	exon	3931826	3931944	3931826	ID=MsG0280006601.01.T01:exon:888;Parent=MsG0280006601.01.T01
Chr2	exon	3932515	3932620	3932515	ID=MsG0280006601.01.T01:exon:889;Parent=MsG0280006601.01.T01
Chr2	exon	3932715	3932847	3932715	ID=MsG0280006601.01.T01:exon:890;Parent=MsG0280006601.01.T01
Chr2	exon	3932937	3933000	3932937	ID=MsG0280006601.01.T01:exon:891;Parent=MsG0280006601.01.T01
Chr2	exon	3933093	3933822	3933093	ID=MsG0280006601.01.T01:exon:892;Parent=MsG0280006601.01.T01
Chr2	exon	3934093	3934419	3934093	ID=MsG0280006601.01.T01:exon:893;Parent=MsG0280006601.01.T01
Chr2	exon	3935070	3935450	3935070	ID=MsG0280006601.01.T01:exon:894;Parent=MsG0280006601.01.T01
Chr2	exon	3935611	3935683	3935611	ID=MsG0280006601.01.T01:exon:895;Parent=MsG0280006601.01.T01
Chr2	exon	3935769	3935854	3935769	ID=MsG0280006601.01.T01:exon:896;Parent=MsG0280006601.01.T01
Chr2	exon	3936080	3936199	3936080	ID=MsG0280006601.01.T01:exon:897;Parent=MsG0280006601.01.T01
Chr2	exon	3936318	3936613	3936318	ID=MsG0280006601.01.T01:exon:898;Parent=MsG0280006601.01.T01
Chr2	CDS	3931124	3931708	3931124	ID=MsG0280006601.01.T01:cds;Parent=MsG0280006601.01.T01
Chr2	CDS	3931826	3931944	3931826	ID=MsG0280006601.01.T01:cds;Parent=MsG0280006601.01.T01
Chr2	CDS	3932515	3932620	3932515	ID=MsG0280006601.01.T01:cds;Parent=MsG0280006601.01.T01
Chr2	CDS	3932715	3932847	3932715	ID=MsG0280006601.01.T01:cds;Parent=MsG0280006601.01.T01
Chr2	CDS	3932937	3933000	3932937	ID=MsG0280006601.01.T01:cds;Parent=MsG0280006601.01.T01
Chr2	CDS	3933093	3933822	3933093	ID=MsG0280006601.01.T01:cds;Parent=MsG0280006601.01.T01
Chr2	CDS	3934093	3934419	3934093	ID=MsG0280006601.01.T01:cds;Parent=MsG0280006601.01.T01
Chr2	CDS	3935070	3935450	3935070	ID=MsG0280006601.01.T01:cds;Parent=MsG0280006601.01.T01
Chr2	CDS	3935611	3935683	3935611	ID=MsG0280006601.01.T01:cds;Parent=MsG0280006601.01.T01
Chr2	CDS	3935769	3935854	3935769	ID=MsG0280006601.01.T01:cds;Parent=MsG0280006601.01.T01
Chr2	CDS	3936080	3936199	3936080	ID=MsG0280006601.01.T01:cds;Parent=MsG0280006601.01.T01
Chr2	CDS	3936318	3936398	3936318	ID=MsG0280006601.01.T01:cds;Parent=MsG0280006601.01.T01
Chr2	three_prime_UTR	3936399	3936613	3936399	ID=MsG0280006601.01.T01:three_prime_utr;Parent=MsG0280006601.01.T01

Gene Sequence

>MsG0280006601.01.T01

ATGGTGAAAAAATCAACGAAGGAAGAATGTCCACCGGACCATCTCCGGTGCAGCCGTACCGACGGCCGACAATGGCGGTGCAAACGTCGAGCGATGGAAAACGTGAAGTTATGCGAAGTTCATCATCTTCAACTTCAACATCGGCAGAAGAAAGTGAAGGTTCCAGAGTCGTTGAAGCTTCAGAGAAATATGAAGATGAAGAAGAAGAAGCAAAACGACGTCGTTGAGGTTGAAATTAGGTCAAAGAAGAAAAAGAAGAAGAGTAAGAAAAACGATGCTGTTGATGTGCAATTGGATTTGATAAGAATGGTGTTACAGAGAGAGGTTGAGAAGAAGAAGAATCCGAATAAGAAGAATGTGCAGAATGTTGATGAAGAATTGGAATTGGTGAAAGTGAATTATAGTGAAGGTGAATTGAGGAAAGAATTGCCCAATGGGGTTATGGAAATTGCTCCTGTTTCGACTTCACGTCGTGATGATGATGATGATGTTGTTGATTTTCACTGTAATGGTAAAGCTGTTGTTACACCACCTTACTTCAGGTCCAAGAATGTTGATAGAAGGGTCCCTTATGATAATTTTCAAGTTTTGAAGAAGTGTAGGAGGAAGAAGTGTCATTGGTGTCAGAGTAGTGATTCTTTGAATTTGATCAAGTGTAACAACTGCCAGAAAGAGTTTTTCTGCATGGATTGCATTAAACAACGGTATTTCGACACTCAAAATGAGGTTAAGAAGGCGTGTCCAGTTTGTCGAGGAACTTGTTCATGTAAAGATTGCCGAGCAAGTCAGTGTAAAGACCGTGAAAGTAAGGATTGTTTGGCTGGTACAAGCAGAGTTGATAGGATATTGCATTTTCATTATTTGGTCTGTATGCTCCTTCCGGTAATAAAACAAATAAGCGAAGACCAGCATGCAGAGCTAGAAACAGAAGCGAAAAATAAAGGGGAAAGTATTTCTGATATTCTCATCAAGCAAATCGAATTTGACTGCAATGAGAAAATTGACTGCAACTACTGCAAAACACCTATTCTGAATCTTCACAGAAGCTGCCTTAACTGTTCCTACAGTCTATGCTTAAGATGTTGTCAGACATTAAGTCAAGGAAGCCCCTTTGAGCATATAAATTCTCCATTGACTGAGTTACCTGACAAAATGGACACTTGCATTGCTGATGAAAGTTGCCTTTTAGAAGACAAGAGCATTTCTAGCGACAATGAAACTGATACGTCAATGTTGCTGGATTCGACTGGTTTTAACGGTACAACTGACAGTATATCATGCCCTCCTTCAGAGCTAGGTGGTTGTGGTAATGACAACCTTGATTTGAGATGTGTTTTTCCGATAAGCTGGATCGAAGAAATGGAAGCTAAGGCAGAAGAGATAGTTTGCAGCTATGAAGTTCCTGAAATTTTGGATAAAAACTCAAGTTGCTCACTTTGTATTGACAAAGATCATAAAACTAAGAGACATAAGCAATTTGAAGATGCTGCTCGAAGAGAAGATTCTAATGATAATTGCTTATTTTATCCTACAGTTTTCGACATCAATTGCGATCATTTTGAACACTTTCAAAAACACTGGGGGAAAGGCCATCCTGTAGTAGTCCGAGACGTGCTCCGAAGTACGAAAAAACTAAGTTGGGATCCTCTGGTCTTGTTCTGTGCTTATCTTGAAAGGAGCATTGCAAGATATGAGAATAATAAAGACTTACTTGAAGCTTGTTTGGATTGGTGGGAGGTTGAAATTAACATTAGACAGCATTTTACTGGCTCTCTTAAATATCAACCTCGGAAAAATGATTGGCATGAGACGCTGAAACTAAATGGATGGTTATCTTCCCAACTATTCAAAGAACAGTTTCCAGCTCATTTTGCTGAAGTAATTGGTGCTCTTCCACTTCAAGAATACATGAATCCGAGGTTCGGTCTTCTGAATTTAGCTGCAAATATGACAGAGGGGAGAGCAGCAATACATGATAAAGGCCCATATGTATACATTTCTTATGGCTGTGCTGACAACAAAGCTTATTCTGTGCTAAATCTCTCTTATGACTCGTATGATGTGGTTAATATTATGGTTTATACCACAGATGTTCCTGTCTCTACAGAACATCTTACTAAAATAACTAAGTTATTGAAGAAGCACAGAACTCTGTGTCAAAGGGGGTCACCGACTGAAAATGCAGAAGACGCGGAACAAAAGGAACCAGAGAGTATTGTAAGCGAAGGAACCGACTTTTACAGGAGAGTCAATAGAACATCTTACATCTCTACTGAAGTGAAAGCAATAGCTAGTCAAAGTTTAGAGAACAATACTTCCAGCAATGGAGAATGTGGTTCTGGTTCTGATGCTGAAAAAACAGAAAGCTCTTTACCTTTCCACAAGACAGATCAAAGCACTGAAATGTATTCTGTTGCTCAGTGGGATGTCTTCCGGAGACAGGATATAGTTCACCCAATTCTAGATCAGAGCATCTTTCTGGACAATACTCACAAAATGAGACTGAAGGAGGAGTTTGAAATCGAACCATGGACGTTTGAGCAACATGTTGGAGAAGCTATCATCATTCCTGCTGGATGTCCATACCAGATTAGGAATTCTAAGTATTGTGTTCAAGTGGTATTGGAATTTATGTCTTCCGAGAGTGTTGCTGAGTGTATCCAATTGACCGATGAGATCCATCTGCTTCCAGAGAACCACAAAGCAAAAGTAGACAAGATTGAGGTGAAGAAAATGGCTCTTCATAGCATGGATATGGCGATAAAAGAAATACGCGAGCTCACTTCCAATCCAAAACATGATTGA

Protein sequence

>MsG0280006601.01.T01

MVKKSTKEECPPDHLRCSRTDGRQWRCKRRAMENVKLCEVHHLQLQHRQKKVKVPESLKLQRNMKMKKKKQNDVVEVEIRSKKKKKKSKKNDAVDVQLDLIRMVLQREVEKKKNPNKKNVQNVDEELELVKVNYSEGELRKELPNGVMEIAPVSTSRRDDDDDVVDFHCNGKAVVTPPYFRSKNVDRRVPYDNFQVLKKCRRKKCHWCQSSDSLNLIKCNNCQKEFFCMDCIKQRYFDTQNEVKKACPVCRGTCSCKDCRASQCKDRESKDCLAGTSRVDRILHFHYLVCMLLPVIKQISEDQHAELETEAKNKGESISDILIKQIEFDCNEKIDCNYCKTPILNLHRSCLNCSYSLCLRCCQTLSQGSPFEHINSPLTELPDKMDTCIADESCLLEDKSISSDNETDTSMLLDSTGFNGTTDSISCPPSELGGCGNDNLDLRCVFPISWIEEMEAKAEEIVCSYEVPEILDKNSSCSLCIDKDHKTKRHKQFEDAARREDSNDNCLFYPTVFDINCDHFEHFQKHWGKGHPVVVRDVLRSTKKLSWDPLVLFCAYLERSIARYENNKDLLEACLDWWEVEINIRQHFTGSLKYQPRKNDWHETLKLNGWLSSQLFKEQFPAHFAEVIGALPLQEYMNPRFGLLNLAANMTEGRAAIHDKGPYVYISYGCADNKAYSVLNLSYDSYDVVNIMVYTTDVPVSTEHLTKITKLLKKHRTLCQRGSPTENAEDAEQKEPESIVSEGTDFYRRVNRTSYISTEVKAIASQSLENNTSSNGECGSGSDAEKTESSLPFHKTDQSTEMYSVAQWDVFRRQDIVHPILDQSIFLDNTHKMRLKEEFEIEPWTFEQHVGEAIIIPAGCPYQIRNSKYCVQVVLEFMSSESVAECIQLTDEIHLLPENHKAKVDKIEVKKMALHSMDMAIKEIRELTSNPKHD*