AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006816.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006816.01.T01 MTR_2g015590 94.863 292 15 0 159 450 84 375 0.0 577
MsG0280006816.01.T01 MTR_2g015590 92.857 84 6 0 1 84 1 84 9.82e-48 168
MsG0280006816.01.T01 MTR_2g015590 94.444 216 12 0 159 374 84 299 4.98e-146 420
MsG0280006816.01.T01 MTR_2g015590 92.857 84 6 0 1 84 1 84 1.93e-48 169
MsG0280006816.01.T01 MTR_2g015630 55.137 292 124 3 159 446 84 372 1.71e-112 336
MsG0280006816.01.T01 MTR_2g015630 60.494 81 27 1 9 84 4 84 1.56e-19 90.5
MsG0280006816.01.T01 MTR_2g015580 54.452 292 124 4 159 446 100 386 7.25e-109 327
MsG0280006816.01.T01 MTR_2g015580 67.568 74 18 1 17 84 27 100 6.33e-24 103
MsG0280006816.01.T01 MTR_2g015650 50.523 287 131 4 159 440 84 364 9.53e-91 280
MsG0280006816.01.T01 MTR_2g015650 48.438 64 33 0 20 83 20 83 1.61e-11 66.2
MsG0280006816.01.T01 MTR_2g015670 45.993 287 124 5 162 440 87 350 1.82e-78 248
MsG0280006816.01.T01 MTR_2g015670 38.202 89 53 1 20 108 20 106 3.08e-11 65.1
MsG0280006816.01.T01 MTR_3g463960 43.706 286 155 4 159 440 95 378 1.95e-76 244
MsG0280006816.01.T01 MTR_3g463960 49.254 67 28 2 29 91 42 106 4.75e-11 64.7
MsG0280006816.01.T01 MTR_3g463950 43.706 286 155 4 159 440 95 378 1.95e-76 244
MsG0280006816.01.T01 MTR_3g463950 49.254 67 28 2 29 91 42 106 4.75e-11 64.7
MsG0280006816.01.T01 MTR_3g463970 43.706 286 155 4 159 440 95 378 1.95e-76 244
MsG0280006816.01.T01 MTR_3g463970 49.254 67 28 2 29 91 42 106 4.75e-11 64.7
MsG0280006816.01.T01 MTR_3g463940 43.706 286 155 4 159 440 95 378 1.95e-76 244
MsG0280006816.01.T01 MTR_3g463940 49.254 67 28 2 29 91 42 106 4.75e-11 64.7
MsG0280006816.01.T01 MTR_3g463930 41.980 293 157 5 159 440 95 385 1.31e-70 229
MsG0280006816.01.T01 MTR_3g463930 47.297 74 33 2 22 91 35 106 1.71e-11 66.2
MsG0280006816.01.T01 MTR_3g448360 43.554 287 153 6 159 440 79 361 3.74e-70 227
MsG0280006816.01.T01 MTR_3g448360 48.529 68 32 1 17 84 15 79 5.38e-12 67.4
MsG0280006816.01.T01 MTR_3g069520 41.958 286 158 5 159 440 78 359 4.24e-70 227
MsG0280006816.01.T01 MTR_3g069780 41.958 286 157 5 159 440 81 361 2.47e-69 225
MsG0280006816.01.T01 MTR_2g043980 43.158 285 143 4 159 440 83 351 2.92e-69 224
MsG0280006816.01.T01 MTR_3g438030 41.958 286 157 5 159 440 81 361 3.03e-69 224
MsG0280006816.01.T01 MTR_0029s0050 41.696 283 151 4 159 440 80 349 2.74e-67 219
MsG0280006816.01.T01 MTR_0029s0100 41.696 283 151 4 159 440 80 349 1.52e-66 217
MsG0280006816.01.T01 MTR_2g079090 40.989 283 153 4 159 440 80 349 1.99e-66 217
MsG0280006816.01.T01 MTR_2g079080 40.989 283 153 4 159 440 80 349 7.30e-66 215
MsG0280006816.01.T01 MTR_4g104240 38.754 289 164 11 159 444 93 371 2.66e-51 178
MsG0280006816.01.T01 MTR_8g028160 32.890 301 177 9 159 442 84 376 9.16e-42 152
MsG0280006816.01.T01 MTR_7g116870 33.444 302 174 10 159 444 81 371 2.72e-41 151
MsG0280006816.01.T01 MTR_1g030265 30.844 308 186 7 150 440 44 341 1.69e-37 140
MsG0280006816.01.T01 MTR_2g043990 38.073 218 107 3 159 373 145 337 9.31e-37 138
MsG0280006816.01.T01 MTR_7g111780 30.420 286 175 7 166 444 92 360 1.02e-35 135
MsG0280006816.01.T01 MTR_7g111780 30.216 278 170 7 174 444 1 261 7.56e-34 128
MsG0280006816.01.T01 MTR_8g038680 29.236 301 190 10 159 444 76 368 8.32e-34 130
MsG0280006816.01.T01 MTR_8g089805 26.994 326 200 10 143 444 4 315 1.32e-32 126
MsG0280006816.01.T01 MTR_1g030230 29.097 299 185 7 159 440 80 368 1.17e-31 125
MsG0280006816.01.T01 MTR_1g030220 28.618 304 190 7 159 445 88 381 1.53e-31 125
MsG0280006816.01.T01 MTR_1g030220 50.633 79 24 4 13 83 16 87 8.80e-12 67.0
MsG0280006816.01.T01 MTR_1g030275 30.693 303 179 10 159 443 87 376 1.59e-31 124
MsG0280006816.01.T01 MTR_8g089805 27.742 310 186 10 159 444 88 383 3.27e-31 124
MsG0280006816.01.T01 MTR_1g030268 29.703 303 186 9 159 445 88 379 9.73e-31 122
MsG0280006816.01.T01 MTR_7g087190 28.571 301 188 8 159 440 91 383 1.05e-29 119
MsG0280006816.01.T01 MTR_1g030340 28.339 307 178 10 159 440 90 379 2.04e-29 119
MsG0280006816.01.T01 MTR_7g113860 27.090 299 187 8 164 443 15 301 1.37e-28 115
MsG0280006816.01.T01 MTR_6g007090 27.576 330 192 12 133 443 72 373 1.66e-28 116
MsG0280006816.01.T01 MTR_7g033165 29.568 301 182 10 159 440 81 370 5.15e-28 114
MsG0280006816.01.T01 MTR_7g113860 27.090 299 187 8 164 443 83 369 6.06e-28 114
MsG0280006816.01.T01 MTR_7g113860 27.090 299 187 8 164 443 89 375 7.43e-28 114
MsG0280006816.01.T01 MTR_1g082390 28.070 285 191 6 164 438 85 365 5.43e-27 111
MsG0280006816.01.T01 MTR_3g466240 30.909 220 116 3 183 396 4 193 1.10e-26 106
MsG0280006816.01.T01 MTR_7g033150 27.036 307 186 13 159 440 83 376 9.74e-25 105
MsG0280006816.01.T01 MTR_7g033155 26.198 313 192 12 159 440 86 390 2.31e-24 104
MsG0280006816.01.T01 MTR_8g012540 27.407 270 173 10 159 413 76 337 5.79e-21 94.0
MsG0280006816.01.T01 MTR_5g009100 27.682 289 179 12 159 438 98 365 6.31e-21 94.4
MsG0280006816.01.T01 MTR_6g007095 25.510 294 195 9 160 440 90 372 8.14e-21 95.9
MsG0280006816.01.T01 MTR_6g007095 25.000 288 193 9 160 441 419 689 1.08e-20 95.5
MsG0280006816.01.T01 MTR_2g044100 28.475 295 171 13 159 439 97 365 4.56e-20 92.0
MsG0280006816.01.T01 MTR_8g031420 27.148 291 181 12 159 439 88 357 6.46e-20 91.3
MsG0280006816.01.T01 MTR_5g074270 29.514 288 170 13 165 444 96 358 8.36e-20 90.9
MsG0280006816.01.T01 MTR_2g033930 28.102 274 172 12 169 435 92 347 9.87e-20 90.9
MsG0280006816.01.T01 MTR_8g031400 28.472 288 175 12 159 439 90 353 2.62e-19 89.4
MsG0280006816.01.T01 MTR_6g007100 24.561 285 199 11 160 440 81 353 2.87e-19 89.4
MsG0280006816.01.T01 MTR_8g031390 26.027 292 180 11 159 438 90 357 4.74e-19 89.0
MsG0280006816.01.T01 MTR_8g031430 27.211 294 177 13 159 439 90 359 2.13e-18 86.7
MsG0280006816.01.T01 MTR_8g022810 28.618 304 173 13 159 442 94 373 2.75e-18 86.7
MsG0280006816.01.T01 MTR_1g030268 29.204 226 140 6 159 374 88 303 3.14e-18 85.9
MsG0280006816.01.T01 MTR_1g025780 29.562 274 164 10 166 434 105 354 1.49e-17 84.3
MsG0280006816.01.T01 MTR_5g022630 27.437 277 168 9 166 434 109 360 2.13e-17 84.0
MsG0280006816.01.T01 MTR_7g116510 26.950 282 171 8 164 435 86 342 2.76e-17 83.6
MsG0280006816.01.T01 MTR_7g116520 27.240 279 173 9 164 435 95 350 3.16e-17 83.6
MsG0280006816.01.T01 MTR_5g074210 33.333 180 103 7 266 444 51 214 3.45e-17 80.9
MsG0280006816.01.T01 MTR_4g056160 27.239 268 170 8 173 433 95 344 3.73e-17 82.8
MsG0280006816.01.T01 MTR_3g466190 38.194 144 63 5 162 302 31 151 1.99e-16 78.6
MsG0280006816.01.T01 MTR_3g466190 50.820 61 29 1 380 440 160 219 1.05e-14 73.6
MsG0280006816.01.T01 MTR_8g079050 25.175 286 178 11 162 435 99 360 3.22e-16 80.5
MsG0280006816.01.T01 MTR_1g024890 27.338 278 174 9 164 435 93 348 3.35e-16 80.1
MsG0280006816.01.T01 MTR_1g079530 30.000 290 145 15 164 435 90 339 5.26e-16 79.7
MsG0280006816.01.T01 MTR_8g075220 27.536 276 176 9 165 434 103 360 9.06e-16 79.0
MsG0280006816.01.T01 MTR_2g100620 27.174 276 169 10 166 433 95 346 9.56e-16 79.0
MsG0280006816.01.T01 MTR_1g025760 26.449 276 174 8 165 434 143 395 1.02e-15 79.0
MsG0280006816.01.T01 MTR_1g069175 27.698 278 174 10 164 435 95 351 1.04e-15 79.0
MsG0280006816.01.T01 MTR_4g019880 28.114 281 170 10 164 435 93 350 1.24e-15 78.6
MsG0280006816.01.T01 MTR_5g083040 27.619 210 135 7 233 435 154 353 1.28e-15 78.6
MsG0280006816.01.T01 MTR_8g022790 26.471 272 166 9 181 442 111 358 3.49e-15 77.0
MsG0280006816.01.T01 MTR_8g075200 27.599 279 167 10 165 434 104 356 3.95e-15 77.4
MsG0280006816.01.T01 MTR_5g087690 25.000 280 187 9 159 431 93 356 8.04e-15 76.3
MsG0280006816.01.T01 MTR_5g022640 26.523 279 170 10 165 434 107 359 2.88e-14 74.3
MsG0280006816.01.T01 MTR_1g079540 25.806 279 177 10 164 435 92 347 8.56e-14 72.8
MsG0280006816.01.T01 MTR_2g015080 26.374 273 168 10 166 426 103 354 9.04e-14 72.8
MsG0280006816.01.T01 MTR_3g005650 26.224 286 177 9 159 435 81 341 1.79e-13 72.0
MsG0280006816.01.T01 MTR_6g021530 26.056 284 170 9 164 435 91 346 3.47e-13 71.2
MsG0280006816.01.T01 MTR_1g025910 26.154 260 170 9 178 434 109 349 8.60e-13 70.1
MsG0280006816.01.T01 MTR_2g033920 27.018 285 167 11 165 435 95 352 9.26e-13 69.7
MsG0280006816.01.T01 MTR_1g082410 24.727 275 127 9 164 437 104 299 2.41e-12 68.2
MsG0280006816.01.T01 MTR_1g025680 27.500 280 163 11 166 434 99 349 2.56e-12 68.9
MsG0280006816.01.T01 MTR_8g075230 27.170 265 163 8 178 434 109 351 3.08e-12 68.2
MsG0280006816.01.T01 MTR_4g056280 25.379 264 171 7 176 433 101 344 3.16e-12 68.2
MsG0280006816.01.T01 MTR_2g084585 25.461 271 162 10 176 433 101 344 4.00e-12 67.8
MsG0280006816.01.T01 MTR_3g435540 24.231 260 174 8 179 434 98 338 4.57e-12 67.8
MsG0280006816.01.T01 MTR_1g025720 26.277 274 174 11 166 434 101 351 5.34e-12 67.4
MsG0280006816.01.T01 MTR_5g084790 24.074 270 171 8 175 434 102 347 5.64e-12 67.4
MsG0280006816.01.T01 MTR_8g031390 25.106 235 152 8 159 391 90 302 5.97e-12 67.0
MsG0280006816.01.T01 MTR_1g025700 25.993 277 171 10 166 434 114 364 5.99e-12 67.4
MsG0280006816.01.T01 MTR_1g060490 23.420 269 179 8 159 424 86 330 6.14e-12 67.0
MsG0280006816.01.T01 MTR_7g033165 26.636 214 141 5 159 362 81 288 7.23e-12 66.6
MsG0280006816.01.T01 MTR_0127s0040 27.778 216 125 8 221 425 18 213 8.16e-12 65.5
MsG0280006816.01.T01 MTR_4g122200 25.806 279 178 10 165 435 95 352 1.16e-11 66.6
MsG0280006816.01.T01 MTR_4g087985 26.102 295 167 14 165 435 99 366 7.07e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006816.01.T01 AT1G31550 54.452 292 129 3 159 449 90 378 2.93e-107 323
MsG0280006816.01.T01 AT1G31550 53.333 75 31 3 13 83 15 89 7.90e-14 73.2
MsG0280006816.01.T01 AT1G28600 51.877 293 137 3 159 450 85 374 1.37e-104 317
MsG0280006816.01.T01 AT1G28600 51.316 76 34 2 12 84 10 85 6.56e-15 76.6
MsG0280006816.01.T01 AT1G31550 53.767 292 128 4 159 449 90 375 2.42e-103 313
MsG0280006816.01.T01 AT1G31550 53.333 75 31 3 13 83 15 89 7.56e-14 73.6
MsG0280006816.01.T01 AT1G28580 50.831 301 145 3 150 449 1 299 4.47e-103 310
MsG0280006816.01.T01 AT1G28580 51.712 292 138 3 159 449 91 380 3.91e-101 307
MsG0280006816.01.T01 AT1G28580 46.667 90 41 3 1 83 1 90 1.04e-14 75.9
MsG0280006816.01.T01 AT1G28590 51.536 293 139 3 159 450 90 380 4.99e-100 305
MsG0280006816.01.T01 AT1G28590 48.837 86 39 3 11 93 14 97 3.62e-16 80.5
MsG0280006816.01.T01 AT1G28570 51.536 293 139 3 159 450 88 378 5.72e-100 304
MsG0280006816.01.T01 AT1G28570 45.745 94 36 3 13 93 4 95 1.95e-13 72.0
MsG0280006816.01.T01 AT1G28610 50.508 295 138 5 159 450 85 374 1.79e-98 300
MsG0280006816.01.T01 AT1G28610 49.296 71 33 2 16 83 14 84 8.55e-12 67.0
MsG0280006816.01.T01 AT2G27360 49.660 294 144 4 159 450 87 378 2.90e-98 300
MsG0280006816.01.T01 AT2G27360 47.959 98 44 3 1 91 1 98 5.79e-17 82.8
MsG0280006816.01.T01 AT1G28670 50.512 293 141 4 159 449 89 379 1.07e-95 293
MsG0280006816.01.T01 AT1G28640 49.488 293 145 3 159 450 89 379 8.54e-95 291
MsG0280006816.01.T01 AT1G28640 41.000 100 50 4 1 91 1 100 7.41e-12 67.4
MsG0280006816.01.T01 AT1G28650 48.630 292 147 3 159 449 91 380 2.25e-94 290
MsG0280006816.01.T01 AT1G28660 47.440 293 149 5 159 449 89 378 1.39e-85 267
MsG0280006816.01.T01 AT1G28660 43.182 88 45 3 1 83 1 88 1.16e-12 69.7
MsG0280006816.01.T01 AT1G28660 47.440 293 148 6 159 449 89 377 4.12e-84 263
MsG0280006816.01.T01 AT1G28660 43.182 88 45 3 1 83 1 88 1.26e-12 69.7
MsG0280006816.01.T01 AT5G45910 43.793 290 158 3 159 443 83 372 2.45e-79 251
MsG0280006816.01.T01 AT5G45910 50.704 71 35 0 14 84 13 83 1.29e-13 72.4
MsG0280006816.01.T01 AT1G28570 51.835 218 104 1 234 450 89 306 1.70e-76 241
MsG0280006816.01.T01 AT1G28570 37.037 135 68 3 13 134 4 134 1.33e-13 72.0
MsG0280006816.01.T01 AT1G28570 51.628 215 103 1 237 450 1 215 6.74e-75 234
MsG0280006816.01.T01 AT5G03980 46.614 251 127 5 183 432 66 310 1.04e-67 219
MsG0280006816.01.T01 AT3G48460 36.552 290 169 8 159 443 92 371 2.77e-51 178
MsG0280006816.01.T01 AT4G01130 34.641 306 169 10 164 449 1 295 2.50e-44 157
MsG0280006816.01.T01 AT4G01130 34.405 311 173 10 159 449 82 381 1.65e-43 157
MsG0280006816.01.T01 AT1G09390 30.796 289 177 8 167 446 94 368 8.56e-33 128
MsG0280006816.01.T01 AT1G56670 29.110 292 178 8 167 446 97 371 1.36e-31 124
MsG0280006816.01.T01 AT1G54790 27.759 299 185 10 164 443 85 371 2.90e-30 121
MsG0280006816.01.T01 AT1G54790 27.759 299 185 10 164 443 86 372 4.12e-30 120
MsG0280006816.01.T01 AT3G05180 28.783 337 209 10 118 438 50 371 1.26e-29 119
MsG0280006816.01.T01 AT1G67830 28.428 299 180 9 159 435 78 364 3.00e-28 115
MsG0280006816.01.T01 AT1G28600 47.154 123 62 2 159 281 85 204 7.19e-28 110
MsG0280006816.01.T01 AT1G28600 51.316 76 34 2 12 84 10 85 5.68e-16 77.4
MsG0280006816.01.T01 AT3G62280 27.778 306 190 9 147 444 79 361 1.07e-27 113
MsG0280006816.01.T01 AT5G14450 29.054 296 190 9 159 440 89 378 3.84e-26 109
MsG0280006816.01.T01 AT3G26430 27.632 304 186 9 159 440 79 370 8.72e-26 108
MsG0280006816.01.T01 AT1G54790 25.926 324 185 11 164 443 85 397 1.49e-25 108
MsG0280006816.01.T01 AT1G28610 45.600 125 61 4 159 281 85 204 5.78e-24 100
MsG0280006816.01.T01 AT1G28610 49.296 71 33 2 17 84 15 85 1.42e-12 67.8
MsG0280006816.01.T01 AT5G40990 30.169 295 169 13 159 439 90 361 2.34e-21 95.9
MsG0280006816.01.T01 AT4G01130 30.837 227 136 7 159 374 82 298 1.27e-20 92.8
MsG0280006816.01.T01 AT4G10950 26.460 291 188 11 152 435 112 383 2.18e-20 93.2
MsG0280006816.01.T01 AT4G10950 26.761 284 182 11 159 435 123 387 1.71e-19 90.5
MsG0280006816.01.T01 AT5G63170 28.148 270 149 8 162 425 92 322 1.78e-18 86.7
MsG0280006816.01.T01 AT3G27950 27.551 294 188 10 160 440 81 362 3.41e-18 86.3
MsG0280006816.01.T01 AT1G53990 28.966 290 173 12 164 441 86 354 5.54e-18 85.5
MsG0280006816.01.T01 AT1G53940 30.464 302 163 16 159 441 92 365 5.89e-18 85.9
MsG0280006816.01.T01 AT3G14820 29.670 273 163 9 167 433 93 342 6.06e-18 85.5
MsG0280006816.01.T01 AT2G30310 25.556 270 173 9 165 428 98 345 2.11e-17 84.0
MsG0280006816.01.T01 AT3G14225 26.531 294 181 13 159 439 90 361 2.43e-17 84.0
MsG0280006816.01.T01 AT5G41890 28.136 295 165 11 165 439 96 363 3.96e-17 83.2
MsG0280006816.01.T01 AT5G15720 26.481 287 177 12 152 426 44 308 4.60e-17 82.4
MsG0280006816.01.T01 AT2G30220 26.642 274 171 9 162 428 94 344 6.43e-17 82.4
MsG0280006816.01.T01 AT2G23540 27.148 291 174 13 162 439 110 375 8.41e-17 82.4
MsG0280006816.01.T01 AT3G14225 27.027 296 181 14 159 439 90 365 8.64e-17 82.0
MsG0280006816.01.T01 AT5G08460 27.536 276 170 10 159 423 101 357 1.86e-16 81.3
MsG0280006816.01.T01 AT1G06990 25.275 273 182 9 165 434 100 353 1.97e-16 80.9
MsG0280006816.01.T01 AT1G58430 25.091 275 182 9 162 432 96 350 2.14e-16 80.9
MsG0280006816.01.T01 AT1G53920 26.000 300 181 14 159 439 101 378 2.36e-16 80.9
MsG0280006816.01.T01 AT2G31540 26.354 277 170 9 165 432 99 350 2.48e-16 80.5
MsG0280006816.01.T01 AT5G15720 26.071 280 175 11 159 426 80 339 3.16e-16 80.5
MsG0280006816.01.T01 AT1G71120 24.912 285 181 9 159 435 83 342 7.12e-16 79.3
MsG0280006816.01.T01 AT5G03820 28.571 273 174 9 166 433 121 377 7.48e-16 79.3
MsG0280006816.01.T01 AT5G03820 28.571 273 174 9 166 433 93 349 8.30e-16 79.0
MsG0280006816.01.T01 AT1G59406 27.636 275 165 9 165 434 97 342 2.16e-15 77.8
MsG0280006816.01.T01 AT1G59030 27.636 275 165 9 165 434 97 342 2.16e-15 77.8
MsG0280006816.01.T01 AT1G58725 27.636 275 165 9 165 434 97 342 2.16e-15 77.8
MsG0280006816.01.T01 AT1G75890 27.500 280 168 9 162 434 112 363 3.83e-15 77.0
MsG0280006816.01.T01 AT1G75890 27.500 280 168 9 162 434 141 392 4.29e-15 77.4
MsG0280006816.01.T01 AT2G40250 25.177 282 172 11 166 434 100 355 7.47e-15 76.3
MsG0280006816.01.T01 AT5G03610 26.335 281 166 9 164 434 101 350 8.84e-15 75.9
MsG0280006816.01.T01 AT1G56670 25.424 236 146 6 148 374 83 297 1.02e-14 75.1
MsG0280006816.01.T01 AT5G33370 26.523 279 175 9 164 435 91 346 2.04e-14 75.1
MsG0280006816.01.T01 AT5G22810 27.839 273 156 10 176 433 105 351 2.53e-14 74.7
MsG0280006816.01.T01 AT1G75890 27.622 286 173 10 162 434 112 376 1.87e-13 72.0
MsG0280006816.01.T01 AT1G71250 24.561 285 190 9 159 436 92 358 2.00e-13 72.0
MsG0280006816.01.T01 AT2G31550 28.750 160 104 4 273 432 60 209 2.10e-13 69.7
MsG0280006816.01.T01 AT1G23500 24.906 265 159 8 178 435 108 339 2.28e-13 71.6
MsG0280006816.01.T01 AT1G73610 24.910 277 162 10 166 434 99 337 2.74e-13 71.2
MsG0280006816.01.T01 AT2G24560 23.704 270 178 9 165 428 98 345 3.23e-13 71.2
MsG0280006816.01.T01 AT3G16370 24.101 278 175 9 166 433 94 345 5.28e-13 70.5
MsG0280006816.01.T01 AT3G09930 26.800 250 157 9 181 426 112 339 5.61e-13 70.5
MsG0280006816.01.T01 AT3G09930 26.800 250 157 9 181 426 112 339 5.61e-13 70.5
MsG0280006816.01.T01 AT1G75930 26.667 285 149 12 174 441 99 340 7.43e-13 70.1
MsG0280006816.01.T01 AT1G75920 25.461 271 162 10 173 434 69 308 1.30e-12 68.9
MsG0280006816.01.T01 AT1G75920 25.461 271 162 10 173 434 97 336 1.65e-12 68.9
MsG0280006816.01.T01 AT2G36325 27.863 262 153 8 179 433 119 351 3.33e-12 68.2
MsG0280006816.01.T01 AT1G20120 28.333 180 108 5 265 437 234 399 1.04e-11 67.0
MsG0280006816.01.T01 AT1G20132 26.407 231 148 6 212 434 160 376 1.10e-11 66.6
MsG0280006816.01.T01 AT1G75920 25.778 225 132 8 219 434 107 305 1.96e-11 65.5
MsG0280006816.01.T01 AT1G75900 25.000 276 175 9 166 434 107 357 2.02e-11 65.9
MsG0280006816.01.T01 AT3G50400 26.132 287 179 12 160 435 94 358 2.69e-11 65.5
MsG0280006816.01.T01 AT5G45950 25.573 262 160 13 177 430 111 345 4.47e-11 64.7
MsG0280006816.01.T01 AT1G74460 23.077 260 177 8 179 434 98 338 5.76e-11 64.3

Find 92 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACACGAGAAACTAAATTT+AGG 0.192946 2:-6649253 None:intergenic
CCTTACCTGGGTTTCATAAA+TGG 0.197642 2:+6646525 MsG0280006816.01.T01:CDS
AGTTGCAAACATTGTTAAAT+AGG 0.218501 2:-6647985 None:intergenic
TTTAGGTGCTGTCACGATTT+TGG 0.234552 2:+6647929 MsG0280006816.01.T01:CDS
GTCCATTGGGATGATGAAAA+TGG 0.237167 2:-6646126 None:intergenic
ATGCAGGAGTTGATTAATTT+AGG 0.239812 2:+6647912 MsG0280006816.01.T01:intron
CTGTAATCACTTCAGCAATT+AGG 0.245065 2:+6647483 MsG0280006816.01.T01:CDS
TCTCTCATGGTTCAGTTAGA+TGG 0.265641 2:+6646654 MsG0280006816.01.T01:CDS
CCCAGGTAAGGTTTCAAATA+TGG 0.288830 2:-6646513 None:intergenic
CGGTTTGAAGCAGCTCATTA+TGG 0.307655 2:-6648070 None:intergenic
GGAAATGAAATACAAGTTTC+CGG 0.309027 2:-6646059 None:intergenic
GACACGAGAAACTAAATTTA+GGG 0.320597 2:-6649252 None:intergenic
TGTAATCACTTCAGCAATTA+GGG 0.325175 2:+6647484 MsG0280006816.01.T01:CDS
TTGTTTATTGTGGGAGAGAT+AGG 0.345056 2:+6647383 MsG0280006816.01.T01:CDS
ACTATTGTTACAGGGTTTGA+TGG 0.345107 2:+6649043 MsG0280006816.01.T01:intron
CACAGCTCCTTGTTTATTGT+GGG 0.349910 2:+6647374 MsG0280006816.01.T01:CDS
CCAATATGGCTTCACCAGTT+TGG 0.350980 2:+6645930 None:intergenic
CGAAGTTTCTTTGAAGAGAA+AGG 0.353793 2:+6646603 MsG0280006816.01.T01:CDS
GACAATTGGGGCTTTGTGGC+TGG 0.355483 2:-6646081 None:intergenic
GATGTATCATTGTAATTGTA+AGG 0.358785 2:-6649100 None:intergenic
GCATAGATGATATTAGTAAA+AGG 0.360441 2:-6648119 None:intergenic
TTGTTTCAAACAAGTGCATT+TGG 0.377020 2:+6647428 MsG0280006816.01.T01:CDS
ATCCTTCAAAATATGTTAGC+TGG 0.383893 2:+6649158 MsG0280006816.01.T01:CDS
GCAAACATTGTTAAATAGGC+TGG 0.389861 2:-6647981 None:intergenic
CATCCAAGTGGTAAACTTCC+AGG 0.393875 2:-6647954 None:intergenic
ATGACTAAGGCTTTATTAGA+AGG 0.394494 2:+6649217 MsG0280006816.01.T01:CDS
TCACAGCTCCTTGTTTATTG+TGG 0.398209 2:+6647373 MsG0280006816.01.T01:CDS
CACTCGAAGCTTATGTAGTT+CGG 0.398857 2:-6648090 None:intergenic
TACAAATCTCCAGAACAATA+TGG 0.406510 2:+6648170 MsG0280006816.01.T01:CDS
CCCAATGGACGCTGCTCTGA+TGG 0.412751 2:+6646139 MsG0280006816.01.T01:CDS
TAAGGAGGGAGCAGACAATT+GGG 0.422616 2:-6646094 None:intergenic
TACACTTCAATCTTCAGCTT+CGG 0.422634 2:+6646019 MsG0280006816.01.T01:CDS
TCCATATTTGAAACCTTACC+TGG 0.425890 2:+6646512 MsG0280006816.01.T01:CDS
TTACTGAGGCTGCACATAGA+TGG 0.426706 2:+6649194 MsG0280006816.01.T01:CDS
GACAGACTACCATATTGTTC+TGG 0.426862 2:-6648179 None:intergenic
CTCTCATGGTTCAGTTAGAT+GGG 0.430313 2:+6646655 MsG0280006816.01.T01:CDS
GAGATAGGAGGCAATGACTA+TGG 0.431204 2:+6647398 MsG0280006816.01.T01:CDS
TCAAAATATGTTAGCTGGGA+TGG 0.431550 2:+6649163 MsG0280006816.01.T01:CDS
GCCATCAGAGCAGCGTCCAT+TGG 0.434559 2:-6646140 None:intergenic
GAAGTAGAATTGCAGATAGA+AGG 0.439424 2:-6646693 None:intergenic
GTAAGGAGGGAGCAGACAAT+TGG 0.442216 2:-6646095 None:intergenic
AAAGTTTGTTGTGGAGGTGG+AGG 0.453145 2:+6649076 MsG0280006816.01.T01:CDS
TTTAAAGTTTGTTGTGGAGG+TGG 0.456967 2:+6649073 MsG0280006816.01.T01:CDS
ACAATTGGGGCTTTGTGGCT+GGG 0.458016 2:-6646080 None:intergenic
CCATCAGAGCAGCGTCCATT+GGG 0.465677 2:-6646139 None:intergenic
GAAGTTTCTTTGAAGAGAAA+GGG 0.467111 2:+6646604 MsG0280006816.01.T01:CDS
AGCAGACAATTGGGGCTTTG+TGG 0.469538 2:-6646085 None:intergenic
TCCATTGGGATGATGAAAAT+GGG 0.475144 2:-6646125 None:intergenic
AATTGTCTGCTCCCTCCTTA+CGG 0.477764 2:+6646097 MsG0280006816.01.T01:CDS
GGTTCAGTTAGATGGGTTCA+AGG 0.489753 2:+6646662 MsG0280006816.01.T01:CDS
GGAGATTCCCTCACTGATAC+CGG 0.493282 2:+6646040 MsG0280006816.01.T01:CDS
ACCTGGGTTTCATAAATGGT+GGG 0.500002 2:+6646529 MsG0280006816.01.T01:CDS
AATGCACTTGTTTGAAACAA+AGG 0.504423 2:-6647425 None:intergenic
CTAAATTTAGGGATGGTGTA+TGG 0.512822 2:-6649241 None:intergenic
CCATTTATGAAACCCAGGTA+AGG 0.514829 2:-6646525 None:intergenic
GTTCCTGGAAGTTTACCACT+TGG 0.516792 2:+6647951 MsG0280006816.01.T01:CDS
ATCAAGCTGGATGTTTGAAA+TGG 0.519348 2:+6648027 MsG0280006816.01.T01:CDS
TACAATGATACATCATTATG+TGG 0.525181 2:+6649109 MsG0280006816.01.T01:CDS
TCCTTCAAAATATGTTAGCT+GGG 0.526996 2:+6649159 MsG0280006816.01.T01:CDS
TACCTGGGTTTCATAAATGG+TGG 0.536018 2:+6646528 MsG0280006816.01.T01:CDS
CGCCTCATCGTTGATTTCAT+CGG 0.539478 2:+6646163 MsG0280006816.01.T01:CDS
AACTGCAAATTACTCTCTCA+TGG 0.542901 2:+6646641 MsG0280006816.01.T01:CDS
TGAAAATGGGTTTCACCGTA+AGG 0.550056 2:-6646112 None:intergenic
GAAGAGGAGTATGATCAAGC+TGG 0.552033 2:+6648014 MsG0280006816.01.T01:CDS
TGTGGTTGCAGTGACCAAAC+TGG 0.553711 2:-6645944 None:intergenic
GTTTGCAACTAAAGATGAAG+AGG 0.557173 2:+6647998 MsG0280006816.01.T01:CDS
TTTATTGTGGGAGAGATAGG+AGG 0.567314 2:+6647386 MsG0280006816.01.T01:CDS
CCTGGGTTTCATAAATGGTG+GGG 0.572945 2:+6646530 MsG0280006816.01.T01:CDS
ATGTATCATTGTAATTGTAA+GGG 0.580286 2:-6649099 None:intergenic
AAGTGATTACAGATACTACT+CGG 0.582205 2:-6647472 None:intergenic
TGCACATAGATGGATGACTA+AGG 0.589955 2:+6649204 MsG0280006816.01.T01:CDS
AATGGGTTTCACCGTAAGGA+GGG 0.595521 2:-6646108 None:intergenic
TGTTGCTGGAGCTAGTGCGT+TGG 0.597338 2:+6646578 MsG0280006816.01.T01:CDS
AGATTTCATTAACTATGCAA+TGG 0.599009 2:+6649298 MsG0280006816.01.T01:three_prime_UTR
AATGGTGGGGATATTAAGCA+TGG 0.600128 2:+6646543 MsG0280006816.01.T01:CDS
CAAGTTTCCGGTATCAGTGA+GGG 0.600962 2:-6646047 None:intergenic
CCCCACCATTTATGAAACCC+AGG 0.602586 2:-6646530 None:intergenic
CCATATTTGAAACCTTACCT+GGG 0.603536 2:+6646513 MsG0280006816.01.T01:CDS
AGTGATTACAGATACTACTC+GGG 0.605846 2:-6647471 None:intergenic
CGAGAAACTAAATTTAGGGA+TGG 0.611535 2:-6649248 None:intergenic
ATAGTTAATGAAATCTGCAA+AGG 0.617678 2:-6649291 None:intergenic
AAATGGGTTTCACCGTAAGG+AGG 0.631801 2:-6646109 None:intergenic
TATCTCTCCCACAATAAACA+AGG 0.647022 2:-6647381 None:intergenic
AAGGAGGGAGCAGACAATTG+GGG 0.649205 2:-6646093 None:intergenic
TTTGGTCACTGCAACCACAA+TGG 0.656867 2:+6645948 MsG0280006816.01.T01:CDS
AGAACAATGAATAACCATTG+TGG 0.663843 2:-6645962 None:intergenic
ACAAGTTTCCGGTATCAGTG+AGG 0.669011 2:-6646048 None:intergenic
CGATGAAATCAACGATGAGG+CGG 0.669244 2:-6646162 None:intergenic
TACCGATGAAATCAACGATG+AGG 0.685263 2:-6646165 None:intergenic
TAGGCTGGATTGCATCCAAG+TGG 0.698085 2:-6647966 None:intergenic
GGATGGATATCATCTTACTG+AGG 0.699804 2:+6649180 MsG0280006816.01.T01:CDS
GTGATTACAGATACTACTCG+GGG 0.711517 2:-6647470 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAGTGAAAAAGAAAAA+GGG - Chr2:6646210-6646229 None:intergenic 15.0%
!! AGCATAAGTAATAAATAATA+GGG + Chr2:6647033-6647052 MsG0280006816.01.T01:intron 15.0%
!! ATAAATATCACATGAAAATA+AGG - Chr2:6648744-6648763 None:intergenic 15.0%
!! TAAATATCACATGAAAATAA+GGG - Chr2:6648743-6648762 None:intergenic 15.0%
!!! AATAAAAATTTGTTACAATG+AGG - Chr2:6648486-6648505 None:intergenic 15.0%
!!! AGTATAGTTTGTTTATTTAA+AGG - Chr2:6648442-6648461 None:intergenic 15.0%
!!! ATTTGCATTTATTAATTTGA+AGG + Chr2:6646779-6646798 MsG0280006816.01.T01:intron 15.0%
!!! TGTTATAGTTTTATAGTTAA+GGG + Chr2:6646839-6646858 MsG0280006816.01.T01:intron 15.0%
!!! TTGTTATAGTTTTATAGTTA+AGG + Chr2:6646838-6646857 MsG0280006816.01.T01:intron 15.0%
!! AACTATTAAATTGAACAGAA+CGG + Chr2:6648585-6648604 MsG0280006816.01.T01:intron 20.0%
!! ATGTATCATTGTAATTGTAA+GGG - Chr2:6649102-6649121 None:intergenic 20.0%
!! ATTTAAAGGTAACTATAGTT+CGG - Chr2:6648428-6648447 None:intergenic 20.0%
!! ATTTGACCTTATAATTTCAA+GGG - Chr2:6648831-6648850 None:intergenic 20.0%
!! CAGCATAAGTAATAAATAAT+AGG + Chr2:6647032-6647051 MsG0280006816.01.T01:intron 20.0%
!! GAATAAAGTGAAAAAGAAAA+AGG - Chr2:6646211-6646230 None:intergenic 20.0%
!! TAAAAAGTGACATAATTGAA+TGG + Chr2:6646350-6646369 MsG0280006816.01.T01:intron 20.0%
!!! TTATTATTACCTGATAATGA+GGG + Chr2:6648501-6648520 MsG0280006816.01.T01:intron 20.0%
!!! TTTATTATTACCTGATAATG+AGG + Chr2:6648500-6648519 MsG0280006816.01.T01:intron 20.0%
! AAACCACAAATTAAAAACCT+GGG - Chr2:6647840-6647859 None:intergenic 25.0%
! AACAGTCATACTATTCTATT+TGG - Chr2:6648551-6648570 None:intergenic 25.0%
! AAGAACAACATTCAAATACT+AGG - Chr2:6646995-6647014 None:intergenic 25.0%
! AATATAGGGAAGTGAATATT+AGG - Chr2:6646730-6646749 None:intergenic 25.0%
! AATTTGAAGGACAAATTTGA+TGG + Chr2:6646792-6646811 MsG0280006816.01.T01:intron 25.0%
! ACATAAAAGTTCAGTCATAA+AGG + Chr2:6648268-6648287 MsG0280006816.01.T01:intron 25.0%
! AGAACAACATTCAAATACTA+GGG - Chr2:6646994-6647013 None:intergenic 25.0%
! AGATTTCATTAACTATGCAA+TGG + Chr2:6649298-6649317 MsG0280006816.01.T01:three_prime_UTR 25.0%
! AGTTGCAAACATTGTTAAAT+AGG - Chr2:6647988-6648007 None:intergenic 25.0%
! ATAGTTAATGAAATCTGCAA+AGG - Chr2:6649294-6649313 None:intergenic 25.0%
! ATATGACATAAAAAGCTAAG+AGG - Chr2:6648217-6648236 None:intergenic 25.0%
! ATTTGAAGGACAAATTTGAT+GGG + Chr2:6646793-6646812 MsG0280006816.01.T01:intron 25.0%
! GAAGAGATAATGATAGTTTA+TGG + Chr2:6646870-6646889 MsG0280006816.01.T01:intron 25.0%
! GATGTATCATTGTAATTGTA+AGG - Chr2:6649103-6649122 None:intergenic 25.0%
! GATTAAAAAATGACTTCAAC+AGG - Chr2:6647872-6647891 None:intergenic 25.0%
! GATTTGACCTTATAATTTCA+AGG - Chr2:6648832-6648851 None:intergenic 25.0%
! GCATAGATGATATTAGTAAA+AGG - Chr2:6648122-6648141 None:intergenic 25.0%
! TACAATGATACATCATTATG+TGG + Chr2:6649109-6649128 MsG0280006816.01.T01:CDS 25.0%
! TATGACATAAAAAGCTAAGA+GGG - Chr2:6648216-6648235 None:intergenic 25.0%
!! ATTAGTTTATGAGTTTATGC+AGG + Chr2:6647896-6647915 MsG0280006816.01.T01:intron 25.0%
!! GTTATTCATTGTTCTTTTAC+TGG + Chr2:6645970-6645989 MsG0280006816.01.T01:CDS 25.0%
!! TTACAGCAGAACTAAATTTT+GGG + Chr2:6648925-6648944 MsG0280006816.01.T01:intron 25.0%
!! TTTACAGCAGAACTAAATTT+TGG + Chr2:6648924-6648943 MsG0280006816.01.T01:intron 25.0%
!! TTTTTCTTGACTGTTTAAGT+TGG + Chr2:6647301-6647320 MsG0280006816.01.T01:intron 25.0%
!!! AATGCTTTTAAAGTTTGTTG+TGG + Chr2:6649067-6649086 MsG0280006816.01.T01:CDS 25.0%
!!! ATGCAAAATTTGCTTCTTTT+GGG + Chr2:6647154-6647173 MsG0280006816.01.T01:intron 25.0%
!!! ATTCTATTTGGTTCGATTTT+TGG - Chr2:6648539-6648558 None:intergenic 25.0%
!!! CTATTTTTTTCAGTGTGTTT+CGG + Chr2:6648699-6648718 MsG0280006816.01.T01:intron 25.0%
!!! GTTACTGTTTTTTTGTTGTT+GGG + Chr2:6646464-6646483 MsG0280006816.01.T01:CDS 25.0%
!!! TATGCAAAATTTGCTTCTTT+TGG + Chr2:6647153-6647172 MsG0280006816.01.T01:intron 25.0%
!!! TGTTACTGTTTTTTTGTTGT+TGG + Chr2:6646463-6646482 MsG0280006816.01.T01:CDS 25.0%
AAACAGTCAAGAAAAAGCAA+CGG - Chr2:6647297-6647316 None:intergenic 30.0%
AAACTTAACCGAACCATTAA+TGG + Chr2:6648344-6648363 MsG0280006816.01.T01:intron 30.0%
AAGTGATTACAGATACTACT+CGG - Chr2:6647475-6647494 None:intergenic 30.0%
AATCATTGAAGAGTGATACA+AGG + Chr2:6649011-6649030 MsG0280006816.01.T01:intron 30.0%
ACTGAACCTTTATACAAGTT+TGG - Chr2:6648381-6648400 None:intergenic 30.0%
ACTGAATAGTTACAACAATC+TGG + Chr2:6648319-6648338 MsG0280006816.01.T01:intron 30.0%
AGAACAATGAATAACCATTG+TGG - Chr2:6645965-6645984 None:intergenic 30.0%
AGACACGAGAAACTAAATTT+AGG - Chr2:6649256-6649275 None:intergenic 30.0%
ATCCTTCAAAATATGTTAGC+TGG + Chr2:6649158-6649177 MsG0280006816.01.T01:CDS 30.0%
ATTGTTGTAACTATTCAGTC+CGG - Chr2:6648318-6648337 None:intergenic 30.0%
ATTTGCTTCACTATTGTTAC+AGG + Chr2:6649034-6649053 MsG0280006816.01.T01:intron 30.0%
CTATGTCCCTTGAAATTATA+AGG + Chr2:6648822-6648841 MsG0280006816.01.T01:intron 30.0%
CTTTATCCAGACAAAATTCT+CGG - Chr2:6646947-6646966 None:intergenic 30.0%
GAAACCACAAATTAAAAACC+TGG - Chr2:6647841-6647860 None:intergenic 30.0%
GACACGAGAAACTAAATTTA+GGG - Chr2:6649255-6649274 None:intergenic 30.0%
GGAAATGAAATACAAGTTTC+CGG - Chr2:6646062-6646081 None:intergenic 30.0%
TACAAATCTCCAGAACAATA+TGG + Chr2:6648170-6648189 MsG0280006816.01.T01:CDS 30.0%
TATGCGATTTCATTCTCTTT+AGG + Chr2:6647335-6647354 MsG0280006816.01.T01:intron 30.0%
TCCTTCAAAATATGTTAGCT+GGG + Chr2:6649159-6649178 MsG0280006816.01.T01:CDS 30.0%
TGTAATCACTTCAGCAATTA+GGG + Chr2:6647484-6647503 MsG0280006816.01.T01:CDS 30.0%
TGTATCACTCTTCAATGATT+TGG - Chr2:6649011-6649030 None:intergenic 30.0%
TTGTTTCAAACAAGTGCATT+TGG + Chr2:6647428-6647447 MsG0280006816.01.T01:CDS 30.0%
TTTGCTTCACTATTGTTACA+GGG + Chr2:6649035-6649054 MsG0280006816.01.T01:intron 30.0%
! AATGCACTTGTTTGAAACAA+AGG - Chr2:6647428-6647447 None:intergenic 30.0%
! ATGCAGGAGTTGATTAATTT+AGG + Chr2:6647912-6647931 MsG0280006816.01.T01:intron 30.0%
! GAAAAAGAAAAAGGGTATGA+TGG - Chr2:6646202-6646221 None:intergenic 30.0%
! GAAGTTTCTTTGAAGAGAAA+GGG + Chr2:6646604-6646623 MsG0280006816.01.T01:CDS 30.0%
!! ACTGTTTAAGTTGGTAATTC+TGG + Chr2:6647310-6647329 MsG0280006816.01.T01:intron 30.0%
!! ATGACTAAGGCTTTATTAGA+AGG + Chr2:6649217-6649236 MsG0280006816.01.T01:CDS 30.0%
!! TGCAAAATTTGCTTCTTTTG+GGG + Chr2:6647155-6647174 MsG0280006816.01.T01:intron 30.0%
!!! AAACCCAGGTTTTTAATTTG+TGG + Chr2:6647834-6647853 MsG0280006816.01.T01:intron 30.0%
!!! CTTGACAGTTTGGTTTTTTT+CGG - Chr2:6648618-6648637 None:intergenic 30.0%
!!! TTTGTGAAGCTGAGTTTTTT+AGG + Chr2:6646487-6646506 MsG0280006816.01.T01:CDS 30.0%
AACTGCAAATTACTCTCTCA+TGG + Chr2:6646641-6646660 MsG0280006816.01.T01:CDS 35.0%
ACTATTGTTACAGGGTTTGA+TGG + Chr2:6649043-6649062 MsG0280006816.01.T01:intron 35.0%
AGGATGAACCATTAATGGTT+CGG - Chr2:6648355-6648374 None:intergenic 35.0%
AGTGATTACAGATACTACTC+GGG - Chr2:6647474-6647493 None:intergenic 35.0%
ATAACACATGAATGTCCATG+AGG - Chr2:6648866-6648885 None:intergenic 35.0%
ATCAAGCTGGATGTTTGAAA+TGG + Chr2:6648027-6648046 MsG0280006816.01.T01:CDS 35.0%
CCTGAACCAAACTTGTATAA+AGG + Chr2:6648372-6648391 MsG0280006816.01.T01:intron 35.0%
CGAAAAAAACCAAACTGTCA+AGG + Chr2:6648616-6648635 MsG0280006816.01.T01:intron 35.0%
CGAGAAACTAAATTTAGGGA+TGG - Chr2:6649251-6649270 None:intergenic 35.0%
CTAAATTTAGGGATGGTGTA+TGG - Chr2:6649244-6649263 None:intergenic 35.0%
CTGTAATCACTTCAGCAATT+AGG + Chr2:6647483-6647502 MsG0280006816.01.T01:CDS 35.0%
GAACGACACTTAATATGAGA+CGG + Chr2:6647730-6647749 MsG0280006816.01.T01:intron 35.0%
GAAGTAGAATTGCAGATAGA+AGG - Chr2:6646696-6646715 None:intergenic 35.0%
GCAAACATTGTTAAATAGGC+TGG - Chr2:6647984-6648003 None:intergenic 35.0%
GTTTGCAACTAAAGATGAAG+AGG + Chr2:6647998-6648017 MsG0280006816.01.T01:CDS 35.0%
TACACTTCAATCTTCAGCTT+CGG + Chr2:6646019-6646038 MsG0280006816.01.T01:CDS 35.0%
TATCTCTCCCACAATAAACA+AGG - Chr2:6647384-6647403 None:intergenic 35.0%
TCAAAATATGTTAGCTGGGA+TGG + Chr2:6649163-6649182 MsG0280006816.01.T01:CDS 35.0%
TCCATTGGGATGATGAAAAT+GGG - Chr2:6646128-6646147 None:intergenic 35.0%
TGATGTCAACGTGTTAATGT+CGG - Chr2:6646321-6646340 None:intergenic 35.0%
TTCATGAACTGAACTGAGTT+CGG - Chr2:6648664-6648683 None:intergenic 35.0%
TTGTTTAAGGAACACGCAAA+AGG + Chr2:6647082-6647101 MsG0280006816.01.T01:intron 35.0%
TTGTTTATTGTGGGAGAGAT+AGG + Chr2:6647383-6647402 MsG0280006816.01.T01:CDS 35.0%
! ATCACTCTTCAATGATTTGG+TGG - Chr2:6649008-6649027 None:intergenic 35.0%
! CCATATTTGAAACCTTACCT+GGG + Chr2:6646513-6646532 MsG0280006816.01.T01:CDS 35.0%
! CCTTTATACAAGTTTGGTTC+AGG - Chr2:6648375-6648394 None:intergenic 35.0%
! CGAAGTTTCTTTGAAGAGAA+AGG + Chr2:6646603-6646622 MsG0280006816.01.T01:CDS 35.0%
! TATTGACCGAGAATTTTGTC+TGG + Chr2:6646938-6646957 MsG0280006816.01.T01:intron 35.0%
! TCCATATTTGAAACCTTACC+TGG + Chr2:6646512-6646531 MsG0280006816.01.T01:CDS 35.0%
! TTTTCAGTGTGTTTCGGTTT+CGG + Chr2:6648705-6648724 MsG0280006816.01.T01:intron 35.0%
!! AGCAGAACTAAATTTTGGGT+TGG + Chr2:6648929-6648948 MsG0280006816.01.T01:intron 35.0%
!! TAGTTTTCTTTGAGAAACCC+AGG + Chr2:6647820-6647839 MsG0280006816.01.T01:intron 35.0%
!! TCCCAGCTAACATATTTTGA+AGG - Chr2:6649163-6649182 None:intergenic 35.0%
!! TTTAAAGTTTGTTGTGGAGG+TGG + Chr2:6649073-6649092 MsG0280006816.01.T01:CDS 35.0%
!!! GCTTTTAAAGTTTGTTGTGG+AGG + Chr2:6649070-6649089 MsG0280006816.01.T01:CDS 35.0%
AAATGCTAACAAGTGCCCTA+AGG - Chr2:6647194-6647213 None:intergenic 40.0%
AAGTCAGAATCAAAGAACCG+GGG - Chr2:6648405-6648424 None:intergenic 40.0%
AATCCTTAACTAGCACCTCA+TGG + Chr2:6648848-6648867 MsG0280006816.01.T01:intron 40.0%
AATGCTAACAAGTGCCCTAA+GGG - Chr2:6647193-6647212 None:intergenic 40.0%
ACCTGGGTTTCATAAATGGT+GGG + Chr2:6646529-6646548 MsG0280006816.01.T01:CDS 40.0%
CACTCGAAGCTTATGTAGTT+CGG - Chr2:6648093-6648112 None:intergenic 40.0%
CAGTCATAAAGGACTGTTCA+TGG + Chr2:6648279-6648298 MsG0280006816.01.T01:intron 40.0%
CCATTTATGAAACCCAGGTA+AGG - Chr2:6646528-6646547 None:intergenic 40.0%
CCCAGGTAAGGTTTCAAATA+TGG - Chr2:6646516-6646535 None:intergenic 40.0%
CCTTACCTGGGTTTCATAAA+TGG + Chr2:6646525-6646544 MsG0280006816.01.T01:CDS 40.0%
CTCTCATGGTTCAGTTAGAT+GGG + Chr2:6646655-6646674 MsG0280006816.01.T01:CDS 40.0%
CTGCAATTCTACTTCAAGTG+AGG + Chr2:6646701-6646720 MsG0280006816.01.T01:intron 40.0%
GAAGTCAGAATCAAAGAACC+GGG - Chr2:6648406-6648425 None:intergenic 40.0%
GACACTTAATATGAGACGGA+AGG + Chr2:6647734-6647753 MsG0280006816.01.T01:intron 40.0%
GACAGACTACCATATTGTTC+TGG - Chr2:6648182-6648201 None:intergenic 40.0%
GATGTCAACGTGTTAATGTC+GGG - Chr2:6646320-6646339 None:intergenic 40.0%
GGAAGTCAGAATCAAAGAAC+CGG - Chr2:6648407-6648426 None:intergenic 40.0%
GGATGGATATCATCTTACTG+AGG + Chr2:6649180-6649199 MsG0280006816.01.T01:CDS 40.0%
GGTCTTAAACAATGCCCTTA+GGG + Chr2:6647176-6647195 MsG0280006816.01.T01:intron 40.0%
GGTTCAGGATGAACCATTAA+TGG - Chr2:6648360-6648379 None:intergenic 40.0%
GTCCATTGGGATGATGAAAA+TGG - Chr2:6646129-6646148 None:intergenic 40.0%
GTGATTACAGATACTACTCG+GGG - Chr2:6647473-6647492 None:intergenic 40.0%
TAAAGGACTGTTCATGGTTC+AGG + Chr2:6648285-6648304 MsG0280006816.01.T01:intron 40.0%
TACCGATGAAATCAACGATG+AGG - Chr2:6646168-6646187 None:intergenic 40.0%
TACCTGGGTTTCATAAATGG+TGG + Chr2:6646528-6646547 MsG0280006816.01.T01:CDS 40.0%
TCTCTCATGGTTCAGTTAGA+TGG + Chr2:6646654-6646673 MsG0280006816.01.T01:CDS 40.0%
TGCACATAGATGGATGACTA+AGG + Chr2:6649204-6649223 MsG0280006816.01.T01:CDS 40.0%
TGCCTTGGAAATACAAGTCA+AGG + Chr2:6647111-6647130 MsG0280006816.01.T01:intron 40.0%
TTTATTGTGGGAGAGATAGG+AGG + Chr2:6647386-6647405 MsG0280006816.01.T01:CDS 40.0%
TTTCAACAGCCCTCATTATC+AGG - Chr2:6648513-6648532 None:intergenic 40.0%
! AATGGTGGGGATATTAAGCA+TGG + Chr2:6646543-6646562 MsG0280006816.01.T01:CDS 40.0%
! ACCCATTTTCATCATCCCAA+TGG + Chr2:6646124-6646143 MsG0280006816.01.T01:CDS 40.0%
! CACAGCTCCTTGTTTATTGT+GGG + Chr2:6647374-6647393 MsG0280006816.01.T01:CDS 40.0%
! CATTTTGCAATTGTCCACGA+GGG + Chr2:6648790-6648809 MsG0280006816.01.T01:intron 40.0%
! CGCAAAAGGAAATTTTGCCT+TGG + Chr2:6647096-6647115 MsG0280006816.01.T01:intron 40.0%
! TCACAGCTCCTTGTTTATTG+TGG + Chr2:6647373-6647392 MsG0280006816.01.T01:CDS 40.0%
! TCATGCTAACAAGTGCTGTA+CGG + Chr2:6647056-6647075 MsG0280006816.01.T01:intron 40.0%
! TCATTTTGCAATTGTCCACG+AGG + Chr2:6648789-6648808 MsG0280006816.01.T01:intron 40.0%
! TGAAAATGGGTTTCACCGTA+AGG - Chr2:6646115-6646134 None:intergenic 40.0%
!! ACGAATTAGCCTTGACAGTT+TGG - Chr2:6648628-6648647 None:intergenic 40.0%
!! GACCTTGACTTGTATTTCCA+AGG - Chr2:6647116-6647135 None:intergenic 40.0%
!! TTTAGGTGCTGTCACGATTT+TGG + Chr2:6647929-6647948 MsG0280006816.01.T01:CDS 40.0%
AATTGTCTGCTCCCTCCTTA+CGG + Chr2:6646097-6646116 MsG0280006816.01.T01:CDS 45.0%
ACAAGTTTCCGGTATCAGTG+AGG - Chr2:6646051-6646070 None:intergenic 45.0%
CAAGTTTCCGGTATCAGTGA+GGG - Chr2:6646050-6646069 None:intergenic 45.0%
CATAGTTCAAATCTCCCTCG+TGG - Chr2:6648807-6648826 None:intergenic 45.0%
CATCCAAGTGGTAAACTTCC+AGG - Chr2:6647957-6647976 None:intergenic 45.0%
CCTGGGTTTCATAAATGGTG+GGG + Chr2:6646530-6646549 MsG0280006816.01.T01:CDS 45.0%
CGATGAAATCAACGATGAGG+CGG - Chr2:6646165-6646184 None:intergenic 45.0%
GAGATAGGAGGCAATGACTA+TGG + Chr2:6647398-6647417 MsG0280006816.01.T01:CDS 45.0%
GGGTCTTAAACAATGCCCTT+AGG + Chr2:6647175-6647194 MsG0280006816.01.T01:intron 45.0%
GTTCCTGGAAGTTTACCACT+TGG + Chr2:6647951-6647970 MsG0280006816.01.T01:CDS 45.0%
TAAGGAGGGAGCAGACAATT+GGG - Chr2:6646097-6646116 None:intergenic 45.0%
TCATGGTTCAGGAAGGATAC+CGG + Chr2:6648296-6648315 MsG0280006816.01.T01:intron 45.0%
TGTATAAAGGTTCAGTGCCC+CGG + Chr2:6648385-6648404 MsG0280006816.01.T01:intron 45.0%
TTACTGAGGCTGCACATAGA+TGG + Chr2:6649194-6649213 MsG0280006816.01.T01:CDS 45.0%
TTTGGTCACTGCAACCACAA+TGG + Chr2:6645948-6645967 MsG0280006816.01.T01:CDS 45.0%
! AAATGGGTTTCACCGTAAGG+AGG - Chr2:6646112-6646131 None:intergenic 45.0%
! AATGGGTTTCACCGTAAGGA+GGG - Chr2:6646111-6646130 None:intergenic 45.0%
! CATGCTAACAAGTGCTGTAC+GGG + Chr2:6647057-6647076 MsG0280006816.01.T01:intron 45.0%
! CGGTTTGAAGCAGCTCATTA+TGG - Chr2:6648073-6648092 None:intergenic 45.0%
! GAAGAGGAGTATGATCAAGC+TGG + Chr2:6648014-6648033 MsG0280006816.01.T01:CDS 45.0%
! GGTTCAGTTAGATGGGTTCA+AGG + Chr2:6646662-6646681 MsG0280006816.01.T01:CDS 45.0%
! TGCTGTACGGGCATTGTTTA+AGG + Chr2:6647069-6647088 MsG0280006816.01.T01:intron 45.0%
! TGTCCATGAGGTGCTAGTTA+AGG - Chr2:6648854-6648873 None:intergenic 45.0%
!! AAAGTTTGTTGTGGAGGTGG+AGG + Chr2:6649076-6649095 MsG0280006816.01.T01:CDS 45.0%
!! CGCCTCATCGTTGATTTCAT+CGG + Chr2:6646163-6646182 MsG0280006816.01.T01:CDS 45.0%
!!! GGAGTGAATTTTGCTGTTGC+TGG + Chr2:6646564-6646583 MsG0280006816.01.T01:CDS 45.0%
!! ATTTATAAAAACAAAATATA+GGG - Chr2:6646744-6646763 None:intergenic 5.0%
!! ATTTATATTATTAATTAAAG+TGG + Chr2:6648758-6648777 MsG0280006816.01.T01:intron 5.0%
!! TATTTATAAAAACAAAATAT+AGG - Chr2:6646745-6646764 None:intergenic 5.0%
!!! TTTTGTAAATTTTTATAATA+AGG + Chr2:6647212-6647231 MsG0280006816.01.T01:intron 5.0%
AAGGAGGGAGCAGACAATTG+GGG - Chr2:6646096-6646115 None:intergenic 50.0%
AGCAGACAATTGGGGCTTTG+TGG - Chr2:6646088-6646107 None:intergenic 50.0%
CCCCACCATTTATGAAACCC+AGG - Chr2:6646533-6646552 None:intergenic 50.0%
GGACTGTTCATGGTTCAGGA+AGG + Chr2:6648289-6648308 MsG0280006816.01.T01:intron 50.0%
GGAGATTCCCTCACTGATAC+CGG + Chr2:6646040-6646059 MsG0280006816.01.T01:CDS 50.0%
GTAAGGAGGGAGCAGACAAT+TGG - Chr2:6646098-6646117 None:intergenic 50.0%
TAGGCTGGATTGCATCCAAG+TGG - Chr2:6647969-6647988 None:intergenic 50.0%
TGTGGTTGCAGTGACCAAAC+TGG - Chr2:6645947-6645966 None:intergenic 50.0%
! ACAATTGGGGCTTTGTGGCT+GGG - Chr2:6646083-6646102 None:intergenic 50.0%
!!! GCTGTCACGATTTTGGTTCC+TGG + Chr2:6647936-6647955 MsG0280006816.01.T01:CDS 50.0%
CCATCAGAGCAGCGTCCATT+GGG - Chr2:6646142-6646161 None:intergenic 55.0%
TGTTGCTGGAGCTAGTGCGT+TGG + Chr2:6646578-6646597 MsG0280006816.01.T01:CDS 55.0%
! GACAATTGGGGCTTTGTGGC+TGG - Chr2:6646084-6646103 None:intergenic 55.0%
CCCAATGGACGCTGCTCTGA+TGG + Chr2:6646139-6646158 MsG0280006816.01.T01:CDS 60.0%
GCCATCAGAGCAGCGTCCAT+TGG - Chr2:6646143-6646162 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 6645935 6649398 6645935 ID=MsG0280006816.01;Name=MsG0280006816.01
Chr2 mRNA 6645935 6649398 6645935 ID=MsG0280006816.01.T01;Parent=MsG0280006816.01;Name=MsG0280006816.01.T01;_AED=0.48;_eAED=0.53;_QI=0|0.75|0.6|1|0.75|0.8|5|110|450
Chr2 exon 6645935 6646303 6645935 ID=MsG0280006816.01.T01:exon:2791;Parent=MsG0280006816.01.T01
Chr2 exon 6646390 6646717 6646390 ID=MsG0280006816.01.T01:exon:2792;Parent=MsG0280006816.01.T01
Chr2 exon 6647357 6647505 6647357 ID=MsG0280006816.01.T01:exon:2793;Parent=MsG0280006816.01.T01
Chr2 exon 6647918 6648191 6647918 ID=MsG0280006816.01.T01:exon:2794;Parent=MsG0280006816.01.T01
Chr2 exon 6649056 6649398 6649056 ID=MsG0280006816.01.T01:exon:2795;Parent=MsG0280006816.01.T01
Chr2 CDS 6645935 6646303 6645935 ID=MsG0280006816.01.T01:cds;Parent=MsG0280006816.01.T01
Chr2 CDS 6646390 6646717 6646390 ID=MsG0280006816.01.T01:cds;Parent=MsG0280006816.01.T01
Chr2 CDS 6647357 6647505 6647357 ID=MsG0280006816.01.T01:cds;Parent=MsG0280006816.01.T01
Chr2 CDS 6647918 6648191 6647918 ID=MsG0280006816.01.T01:cds;Parent=MsG0280006816.01.T01
Chr2 CDS 6649056 6649288 6649056 ID=MsG0280006816.01.T01:cds;Parent=MsG0280006816.01.T01
Chr2 three_prime_UTR 6649289 6649398 6649289 ID=MsG0280006816.01.T01:three_prime_utr;Parent=MsG0280006816.01.T01
Gene Sequence

>MsG0280006816.01.T01

ATGGCTTCACCAGTTTGGTCACTGCAACCACAATGGTTATTCATTGTTCTTTTACTGGTTTTTACTACTGCTGCTACTAGTTGCTACACTTCAATCTTCAGCTTCGGAGATTCCCTCACTGATACCGGAAACTTGTATTTCATTTCCCAGCCACAAAGCCCCAATTGTCTGCTCCCTCCTTACGGTGAAACCCATTTTCATCATCCCAATGGACGCTGCTCTGATGGCCGCCTCATCGTTGATTTCATCGGTATAAATCAATTTCCATCATACCCTTTTTCTTTTTCACTTTATTCTTTGATAAAAATTCATTCTTTGTATAAATTGTACATGCTTGTTATCTACAAATCATTATCACAAATACTCGACACATTGACACTTGTAACACTTGACTTGACTTCTATTAGAAGTGTCGATGCTACGAAGTTTGTTATTGATATTATGTTACTGTTTTTTTGTTGTTGGGTTTGTGAAGCTGAGTTTTTTAGGCTTCCATATTTGAAACCTTACCTGGGTTTCATAAATGGTGGGGATATTAAGCATGGAGTGAATTTTGCTGTTGCTGGAGCTAGTGCGTTGGATCGAAGTTTCTTTGAAGAGAAAGGGTTTGATATTGAAGAAACTGCAAATTACTCTCTCATGGTTCAGTTAGATGGGTTCAAGGAACTGTTGCCTTCTATCTGCAATTCTACTTCAAGCTGCAAAGATGTTCTTCACAGCTCCTTGTTTATTGTGGGAGAGATAGGAGGCAATGACTATGGTTTTCCTTTGTTTCAAACAAGTGCATTTGGAGATCTTATTACTTACGTACCCCGAGTAGTATCTGTAATCACTTCAGCAATTAGGGAGTTGATTAATTTAGGTGCTGTCACGATTTTGGTTCCTGGAAGTTTACCACTTGGATGCAATCCAGCCTATTTAACAATGTTTGCAACTAAAGATGAAGAGGAGTATGATCAAGCTGGATGTTTGAAATGGTTAAACAAGTTTTTCGAATACCATAATGAGCTGCTTCAAACCGAACTACATAAGCTTCGAGTGCTGTATCCTTTTACTAATATCATCTATGCAGATTATTTCAATGCTGCATTGCAGTTTTACAAATCTCCAGAACAATATGGGTTTGATGGAAATGCTTTTAAAGTTTGTTGTGGAGGTGGAGGCCCTTACAATTACAATGATACATCATTATGTGGAAACTCAGAAGTGATTGCATGTGATGATCCTTCAAAATATGTTAGCTGGGATGGATATCATCTTACTGAGGCTGCACATAGATGGATGACTAAGGCTTTATTAGAAGGACCATACACCATCCCTAAATTTAGTTTCTCGTGTCTTAGTAGTGAGTGA
Protein sequence

>MsG0280006816.01.T01

MASPVWSLQPQWLFIVLLLVFTTAATSCYTSIFSFGDSLTDTGNLYFISQPQSPNCLLPPYGETHFHHPNGRCSDGRLIVDFIGINQFPSYPFSFSLYSLIKIHSLYKLYMLVIYKSLSQILDTLTLVTLDLTSIRSVDATKFVIDIMLLFFCCWVCEAEFFRLPYLKPYLGFINGGDIKHGVNFAVAGASALDRSFFEEKGFDIEETANYSLMVQLDGFKELLPSICNSTSSCKDVLHSSLFIVGEIGGNDYGFPLFQTSAFGDLITYVPRVVSVITSAIRELINLGAVTILVPGSLPLGCNPAYLTMFATKDEEEYDQAGCLKWLNKFFEYHNELLQTELHKLRVLYPFTNIIYADYFNAALQFYKSPEQYGFDGNAFKVCCGGGGPYNYNDTSLCGNSEVIACDDPSKYVSWDGYHLTEAAHRWMTKALLEGPYTIPKFSFSCLSSE*