AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006828.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006828.01.T01 MTR_2g015870 85.034 441 19 2 1 395 1 440 0.0 703
MsG0280006828.01.T01 MTR_3g106140 30.026 383 192 6 65 373 90 470 8.71e-35 134
MsG0280006828.01.T01 MTR_1g014420 30.259 347 161 7 105 373 147 490 1.18e-29 120
MsG0280006828.01.T01 MTR_4g071430 44.000 125 68 2 37 160 31 154 3.11e-20 87.8
MsG0280006828.01.T01 MTR_8g080280 23.642 313 186 5 61 321 402 713 3.73e-12 68.6
MsG0280006828.01.T01 MTR_1g069845 25.887 282 160 6 87 322 323 601 2.44e-11 65.9
MsG0280006828.01.T01 MTR_1g069845 25.887 282 160 6 87 322 440 718 3.28e-11 65.5
MsG0280006828.01.T01 MTR_1g069845 25.887 282 160 6 87 322 444 722 3.86e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006828.01.T01 AT2G27430 51.025 439 149 7 10 395 13 438 2.49e-136 397
MsG0280006828.01.T01 AT4G31890 33.626 342 159 8 97 373 155 493 1.06e-37 143
MsG0280006828.01.T01 AT4G31890 33.626 342 159 8 97 373 155 493 1.06e-37 143
MsG0280006828.01.T01 AT4G31890 33.626 342 159 8 97 373 155 493 1.06e-37 143
MsG0280006828.01.T01 AT2G25130 33.230 322 156 6 108 373 132 450 7.43e-36 137
MsG0280006828.01.T01 AT2G23140 23.684 342 209 8 30 325 300 635 4.72e-12 68.2
MsG0280006828.01.T01 AT2G23140 23.684 342 209 8 30 325 300 635 4.72e-12 68.2
MsG0280006828.01.T01 AT2G23140 23.684 342 209 8 30 325 489 824 8.20e-12 67.4
MsG0280006828.01.T01 AT2G23140 23.684 342 209 8 30 325 489 824 8.20e-12 67.4
MsG0280006828.01.T01 AT2G23140 23.684 342 209 8 30 325 492 827 9.63e-12 67.4
MsG0280006828.01.T01 AT1G24330 24.299 321 198 8 43 341 432 729 9.26e-11 64.3
MsG0280006828.01.T01 AT1G24330 24.299 321 198 8 43 341 432 729 9.26e-11 64.3

Find 95 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCATCATCTTCTTCTATT+TGG 0.105767 2:-6816907 MsG0280006828.01.T01:CDS
GAAACTATTGCAATGGTTTA+AGG 0.113364 2:-6813302 MsG0280006828.01.T01:CDS
GTCAATTGTCTTAGGTAATT+TGG 0.115729 2:+6813854 None:intergenic
ACCGACAACTCTTGACATTT+TGG 0.155414 2:+6813451 None:intergenic
TTTGTATCTCTTTGATTTAA+AGG 0.178789 2:+6813214 None:intergenic
ACAAAGCTTGCATAAGAATT+TGG 0.181591 2:-6813158 MsG0280006828.01.T01:CDS
TAACTTGTTGGTCACGTTAA+TGG 0.225258 2:-6813545 MsG0280006828.01.T01:CDS
TTCATCATCTTCTTCTATTT+GGG 0.225551 2:-6816906 MsG0280006828.01.T01:CDS
CGGAGGATTCACAGCGCTTT+CGG 0.245617 2:+6816819 None:intergenic
GGAGGATTCACAGCGCTTTC+GGG 0.279689 2:+6816820 None:intergenic
TTCATCACAAAGAGATAAAA+TGG 0.283330 2:-6813398 MsG0280006828.01.T01:CDS
GCAAGCCCTTTAGTTTCTTA+TGG 0.289989 2:-6813637 MsG0280006828.01.T01:CDS
TTCTGAAATTTCTTTGACTA+AGG 0.295883 2:+6813588 None:intergenic
AAGGAAAGTTCTAAGAGAAT+TGG 0.315481 2:+6813607 None:intergenic
GGAGGAGGAGAGGGAGGAGG+TGG 0.327726 2:-6816699 MsG0280006828.01.T01:CDS
ATTCCAAATCTTGGTGTTTG+TGG 0.341246 2:+6813244 None:intergenic
TGTGCCGGTGTTGGTATCTA+TGG 0.344407 2:-6816534 MsG0280006828.01.T01:CDS
AATAACCAATGACTTGAGTT+TGG 0.347977 2:+6813096 None:intergenic
AACTTGTTGGTCACGTTAAT+GGG 0.351557 2:-6813544 MsG0280006828.01.T01:CDS
TCTACAAGGTCAATTGTCTT+AGG 0.352811 2:+6813846 None:intergenic
GGTCCACAAACACCAAGATT+TGG 0.367878 2:-6813247 MsG0280006828.01.T01:CDS
ACAGCGCTTTCGGGTTGCTT+TGG 0.370779 2:+6816829 None:intergenic
GCTATGTGAAGTTTAAATAC+AGG 0.389749 2:+6817068 None:intergenic
CAACTTCGAAGTCTTCAATA+AGG 0.402498 2:+6813052 None:intergenic
GTAAAGATGGGACCACATTC+TGG 0.405463 2:-6813268 MsG0280006828.01.T01:CDS
ACTCAAAGGGCAAATGCAAA+TGG 0.411229 2:-6813127 MsG0280006828.01.T01:CDS
AGATGCTTCACTTTGGAAGC+TGG 0.420867 2:-6816643 MsG0280006828.01.T01:CDS
GGTATCTATGGTGGCTTCCC+AGG 0.423850 2:-6816522 MsG0280006828.01.T01:CDS
TGCTACTTTAGGTAACTTGT+TGG 0.425049 2:-6813557 MsG0280006828.01.T01:CDS
GAAGCATAAGGAGGAGGAGA+GGG 0.427827 2:-6816708 MsG0280006828.01.T01:CDS
CTCAAAGGGCAAATGCAAAT+GGG 0.429397 2:-6813126 MsG0280006828.01.T01:CDS
CTCTTCGATGACTAACCACC+TGG 0.433350 2:+6816504 None:intergenic
AGGAAAGTTCTAAGAGAATT+GGG 0.434479 2:+6813608 None:intergenic
GCATAAGGAGGAGGAGAGGG+AGG 0.434717 2:-6816705 MsG0280006828.01.T01:CDS
TAAGGAGGAGGAGAGGGAGG+AGG 0.439148 2:-6816702 MsG0280006828.01.T01:CDS
TATGGAGAAGCATAAGGAGG+AGG 0.454646 2:-6816714 MsG0280006828.01.T01:CDS
GATGCTTCACTTTGGAAGCT+GGG 0.458178 2:-6816642 MsG0280006828.01.T01:CDS
ACCAAAATGTCAAGAGTTGT+CGG 0.458853 2:-6813452 MsG0280006828.01.T01:CDS
GGTGACCCCATTCCAAATCT+TGG 0.459651 2:+6813235 None:intergenic
AAAACAACTTCAAGAAGTAT+AGG 0.466913 2:+6813358 None:intergenic
GTCCTCCAAACTCAAGTCAT+TGG 0.475448 2:-6813101 MsG0280006828.01.T01:CDS
GATTGAAACAGTGCAAGTTA+TGG 0.479849 2:-6816732 MsG0280006828.01.T01:CDS
TCTTCAATAAGGCAAGCTCT+TGG 0.481042 2:+6813063 None:intergenic
GTGGTTAGTCATCGAAGAGC+AGG 0.481239 2:-6816500 MsG0280006828.01.T01:CDS
AATCAAAGAGATACAAATGA+AGG 0.481857 2:-6813208 MsG0280006828.01.T01:CDS
GAATCGATGAAACTATTTGA+AGG 0.482066 2:+6817045 None:intergenic
GAAAGTTGATAACAGAACTT+GGG 0.485027 2:-6816559 MsG0280006828.01.T01:CDS
TTTGGAAATAATAACTCAAA+GGG 0.489930 2:-6813140 MsG0280006828.01.T01:CDS
CATTGTTGAAAGGTTGTACA+AGG 0.492312 2:+6813669 None:intergenic
GGATGAAAGACAAGTAAAGA+TGG 0.494341 2:-6813281 MsG0280006828.01.T01:CDS
AGAAAGTTGATAACAGAACT+TGG 0.496648 2:-6816560 MsG0280006828.01.T01:CDS
CAAGACCATAAGAAACTAAA+GGG 0.497099 2:+6813632 None:intergenic
CAGGAACAAGGCTATGATAG+TGG 0.505796 2:-6813892 MsG0280006828.01.T01:CDS
AACCAATGACTTGAGTTTGG+AGG 0.512382 2:+6813099 None:intergenic
CAAACACCAAGATTTGGAAT+GGG 0.513089 2:-6813241 MsG0280006828.01.T01:CDS
CTTTGGAAGCTGGGAAGAGA+AGG 0.513641 2:-6816633 MsG0280006828.01.T01:CDS
GCAAGTTATGGAGAAGCATA+AGG 0.517239 2:-6816720 MsG0280006828.01.T01:CDS
GAGATAAAATGGCACAAGCT+AGG 0.518471 2:-6813387 MsG0280006828.01.T01:CDS
AATTCTTTACTCGTATCAAA+CGG 0.519898 2:-6816862 MsG0280006828.01.T01:CDS
ACAGTGAAGATGCTTCACTT+TGG 0.523676 2:-6816650 MsG0280006828.01.T01:CDS
CTATGTGAAGTTTAAATACA+GGG 0.530377 2:+6817069 None:intergenic
ACAAGACCATAAGAAACTAA+AGG 0.539120 2:+6813631 None:intergenic
ACAAACACCAAGATTTGGAA+TGG 0.539160 2:-6813242 MsG0280006828.01.T01:CDS
AACAGAACTTGGGGTTGTGC+CGG 0.544571 2:-6816549 MsG0280006828.01.T01:CDS
GAGCAATGAAACTATTGCAA+TGG 0.549239 2:-6813309 MsG0280006828.01.T01:CDS
AATCGATGAAACTATTTGAA+GGG 0.551742 2:+6817046 None:intergenic
CAAATAGAAGAAGATGATGA+AGG 0.552922 2:+6816908 None:intergenic
AGAAGCATAAGGAGGAGGAG+AGG 0.553180 2:-6816709 MsG0280006828.01.T01:CDS
ACGTTGATTTACCTAGCTGA+TGG 0.553971 2:-6816470 MsG0280006828.01.T01:CDS
GTATTCTTTCTTCAGGAACA+AGG 0.556956 2:-6813904 MsG0280006828.01.T01:intron
ACTTGGGGTTGTGCCGGTGT+TGG 0.560426 2:-6816543 MsG0280006828.01.T01:CDS
GATGAAAGACAAGTAAAGAT+GGG 0.560923 2:-6813280 MsG0280006828.01.T01:CDS
TTCTTTGTTTAAATAATCGG+AGG 0.562901 2:+6816802 None:intergenic
ATTTGGAAATAATAACTCAA+AGG 0.567717 2:-6813141 MsG0280006828.01.T01:CDS
TGATGAAGGAGTTGACATGT+TGG 0.574552 2:+6816922 None:intergenic
AGCAATAGAGAACAACTCAA+TGG 0.577734 2:-6813515 MsG0280006828.01.T01:CDS
TGGAAGCTGGGAAGAGAAGG+AGG 0.583399 2:-6816630 MsG0280006828.01.T01:CDS
GGTGTTTGTGGACCAGAATG+TGG 0.586193 2:+6813256 None:intergenic
AAGGCTATGATAGTGGAGGC+AGG 0.586256 2:-6813885 MsG0280006828.01.T01:CDS
ATCAAAGAGATACAAATGAA+GGG 0.587935 2:-6813207 MsG0280006828.01.T01:CDS
ATCTATGGTGGCTTCCCAGG+TGG 0.600429 2:-6816519 MsG0280006828.01.T01:CDS
AAGCAGAGCTGAACAGAACA+AGG 0.613079 2:-6816777 MsG0280006828.01.T01:CDS
TCAAAGGGCAAATGCAAATG+GGG 0.635611 2:-6813125 MsG0280006828.01.T01:CDS
TTATGGTTGACTCATCTACA+AGG 0.635954 2:+6813832 None:intergenic
ACGTGTAAGTTCCATCAGCT+AGG 0.637555 2:+6816459 None:intergenic
GCCGGTGTTGGTATCTATGG+TGG 0.644634 2:-6816531 MsG0280006828.01.T01:CDS
TGGTTAGTCATCGAAGAGCA+GGG 0.645413 2:-6816499 MsG0280006828.01.T01:CDS
AAAGTTGATAACAGAACTTG+GGG 0.647620 2:-6816558 MsG0280006828.01.T01:CDS
AAACACCAAGATTTGGAATG+GGG 0.656392 2:-6813240 MsG0280006828.01.T01:CDS
TGAAAACAGAGAAAGAACAG+AGG 0.661008 2:+6817006 None:intergenic
GAACAAGGCTATGATAGTGG+AGG 0.667903 2:-6813889 MsG0280006828.01.T01:CDS
TATGTGAAGTTTAAATACAG+GGG 0.674978 2:+6817070 None:intergenic
AGTTATGGAGAAGCATAAGG+AGG 0.680310 2:-6816717 MsG0280006828.01.T01:CDS
GCCACCATAGATACCAACAC+CGG 0.692048 2:+6816530 None:intergenic
TCTTCGATGACTAACCACCT+GGG 0.727974 2:+6816505 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAGAATAAGAAATAAA+AGG + Chr2:6815322-6815341 None:intergenic 10.0%
!! AATAAAATTAACATTTCAAA+TGG - Chr2:6814832-6814851 MsG0280006828.01.T01:intron 10.0%
!! TTAATGCAATTTAATTAATT+TGG + Chr2:6814940-6814959 None:intergenic 10.0%
!! TTATGAAAATAATTAAAATC+CGG - Chr2:6815673-6815692 MsG0280006828.01.T01:intron 10.0%
!! TTGTATAAAATATAATTAAG+TGG + Chr2:6814588-6814607 None:intergenic 10.0%
!!! TTATATTTTATACAAGAAAT+TGG - Chr2:6814593-6814612 MsG0280006828.01.T01:intron 10.0%
!!! TTTTTCTTTGTTTAAATAAT+CGG + Chr2:6813345-6813364 None:intergenic 10.0%
!! ACATTAAATAAAAAACAGTT+TGG + Chr2:6814756-6814775 None:intergenic 15.0%
!! ATGTTATTCCAAAATTATTA+CGG - Chr2:6814520-6814539 MsG0280006828.01.T01:intron 15.0%
!! GAAAAAAAAAATTAATGTGT+TGG + Chr2:6816053-6816072 None:intergenic 15.0%
!! TATGAAAATAATTAAAATCC+GGG - Chr2:6815674-6815693 MsG0280006828.01.T01:intron 15.0%
!!! ATTTTTCAATGAAATAATTG+AGG - Chr2:6815645-6815664 MsG0280006828.01.T01:intron 15.0%
!!! CTAAAAAACATTGTAATTTT+AGG + Chr2:6813882-6813901 None:intergenic 15.0%
!!! TTCTTTTATTTATTTGTTTG+TGG + Chr2:6813170-6813189 None:intergenic 15.0%
!! AAAATTAACATTTCAAATGG+AGG - Chr2:6814835-6814854 MsG0280006828.01.T01:intron 20.0%
!! ATATTAAATCACCAAAATGA+TGG - Chr2:6815081-6815100 MsG0280006828.01.T01:intron 20.0%
!! ATTTGGAAATAATAACTCAA+AGG - Chr2:6817000-6817019 MsG0280006828.01.T01:five_prime_UTR 20.0%
!! CAAGATTTATTAATACAAAG+TGG - Chr2:6814685-6814704 MsG0280006828.01.T01:intron 20.0%
!! CATAGTAGATGTTTATTTAA+TGG - Chr2:6814137-6814156 MsG0280006828.01.T01:intron 20.0%
!! TAAATGGTAAAATACAGTAT+AGG - Chr2:6815960-6815979 MsG0280006828.01.T01:intron 20.0%
!! TAAGAATAAGAAATAAAAGG+TGG + Chr2:6815319-6815338 None:intergenic 20.0%
!! TATTAAATCACCAAAATGAT+GGG - Chr2:6815082-6815101 MsG0280006828.01.T01:intron 20.0%
!! TATTAATACAAAGTGGTTAT+TGG - Chr2:6814692-6814711 MsG0280006828.01.T01:intron 20.0%
!! TTTAAAGAGTCTAAATTGTT+GGG - Chr2:6814087-6814106 MsG0280006828.01.T01:intron 20.0%
!! TTTGGAAATAATAACTCAAA+GGG - Chr2:6817001-6817020 MsG0280006828.01.T01:five_prime_UTR 20.0%
!!! AAAATCTCAACAAAATTTTG+TGG + Chr2:6816654-6816673 None:intergenic 20.0%
!!! GATATAAACCGTAATAATTT+TGG + Chr2:6814531-6814550 None:intergenic 20.0%
!!! TTAAGAATGTCTTTAAGAAA+TGG + Chr2:6816412-6816431 None:intergenic 20.0%
!!! TTAATTTGATGCCAAAATAT+TGG + Chr2:6814991-6815010 None:intergenic 20.0%
!!! TTTGTATCTCTTTGATTTAA+AGG + Chr2:6816930-6816949 None:intergenic 20.0%
! AATAAAAAACAGTTTGGTTG+TGG + Chr2:6814750-6814769 None:intergenic 25.0%
! AATAAGAAATAAAAGGTGGT+GGG + Chr2:6815315-6815334 None:intergenic 25.0%
! AATCAAAGAGATACAAATGA+AGG - Chr2:6816933-6816952 MsG0280006828.01.T01:exon 25.0%
! AATCGATGAAACTATTTGAA+GGG + Chr2:6813098-6813117 None:intergenic 25.0%
! AATGGAAGAAAATCTAATGA+AGG + Chr2:6816394-6816413 None:intergenic 25.0%
! AATTCTTTACTCGTATCAAA+CGG - Chr2:6813279-6813298 MsG0280006828.01.T01:CDS 25.0%
! AGAAAATCTAATGAAGGAAA+AGG + Chr2:6816388-6816407 None:intergenic 25.0%
! ATCAAAGAGATACAAATGAA+GGG - Chr2:6816934-6816953 MsG0280006828.01.T01:exon 25.0%
! ATGTGTTCTTAAGATGTTAT+TGG - Chr2:6814043-6814062 MsG0280006828.01.T01:intron 25.0%
! ATTAAACAGACCATTGTAAA+TGG - Chr2:6815944-6815963 MsG0280006828.01.T01:intron 25.0%
! CTATGTGAAGTTTAAATACA+GGG + Chr2:6813075-6813094 None:intergenic 25.0%
! GAAAAAATTGATGAAGAGTT+TGG - Chr2:6816956-6816975 MsG0280006828.01.T01:five_prime_UTR 25.0%
! GAAAATCTAATGAAGGAAAA+GGG + Chr2:6816387-6816406 None:intergenic 25.0%
! GAATTTGAAGAATTACACTT+TGG + Chr2:6814794-6814813 None:intergenic 25.0%
! GATAAAGATAGTGAAAAACT+TGG - Chr2:6815526-6815545 MsG0280006828.01.T01:intron 25.0%
! GGTTAAAATGTTGAATTGAT+GGG - Chr2:6814064-6814083 MsG0280006828.01.T01:intron 25.0%
! GTTTAAAGAGTCTAAATTGT+TGG - Chr2:6814086-6814105 MsG0280006828.01.T01:intron 25.0%
! TAGAGACATTTCATATATTG+TGG + Chr2:6813784-6813803 None:intergenic 25.0%
! TATGTGAAGTTTAAATACAG+GGG + Chr2:6813074-6813093 None:intergenic 25.0%
! TCTACTATGAATATGAACAT+AGG + Chr2:6814126-6814145 None:intergenic 25.0%
! TGGTTAAAATGTTGAATTGA+TGG - Chr2:6814063-6814082 MsG0280006828.01.T01:intron 25.0%
! TGTTGAATGAAAAAAACCAT+TGG + Chr2:6815286-6815305 None:intergenic 25.0%
! TTCATCACAAAGAGATAAAA+TGG - Chr2:6816743-6816762 MsG0280006828.01.T01:CDS 25.0%
! TTCATCATCTTCTTCTATTT+GGG - Chr2:6813235-6813254 MsG0280006828.01.T01:CDS 25.0%
! TTCTTCTATAAATAGAGACT+TGG + Chr2:6815581-6815600 None:intergenic 25.0%
! TTTCTATGTGAAGTGTATTA+TGG + Chr2:6815039-6815058 None:intergenic 25.0%
!! AAAACAACTTCAAGAAGTAT+AGG + Chr2:6816786-6816805 None:intergenic 25.0%
!! ATGGAATTTAGCCAATATTT+TGG - Chr2:6814977-6814996 MsG0280006828.01.T01:intron 25.0%
!! ATTTTGTTGAGATTTTGTCA+TGG - Chr2:6816658-6816677 MsG0280006828.01.T01:CDS 25.0%
!! CATTTTCTAACATTGTTGAA+AGG + Chr2:6816485-6816504 None:intergenic 25.0%
!! CTGTATTTTACCATTTACAA+TGG + Chr2:6815957-6815976 None:intergenic 25.0%
!! TTCTTTGTTTAAATAATCGG+AGG + Chr2:6813342-6813361 None:intergenic 25.0%
!! TTTTGTTGAGATTTTGTCAT+GGG - Chr2:6816659-6816678 MsG0280006828.01.T01:CDS 25.0%
!!! ACTTCTTGAAGTTGTTTTAT+TGG - Chr2:6816788-6816807 MsG0280006828.01.T01:CDS 25.0%
!!! CTTCTTGAAGTTGTTTTATT+GGG - Chr2:6816789-6816808 MsG0280006828.01.T01:CDS 25.0%
!!! TTCTGAAATTTCTTTGACTA+AGG + Chr2:6816556-6816575 None:intergenic 25.0%
!!! TTCTTGAAGTTGTTTTATTG+GGG - Chr2:6816790-6816809 MsG0280006828.01.T01:CDS 25.0%
AATAACCAATGACTTGAGTT+TGG + Chr2:6817048-6817067 None:intergenic 30.0%
AATGAAAAAAACCATTGGAG+AGG + Chr2:6815281-6815300 None:intergenic 30.0%
AATGACATCAAATCTGATGA+TGG - Chr2:6814958-6814977 MsG0280006828.01.T01:intron 30.0%
ACAAAGCTTGCATAAGAATT+TGG - Chr2:6816983-6817002 MsG0280006828.01.T01:five_prime_UTR 30.0%
ACAAGACCATAAGAAACTAA+AGG + Chr2:6816513-6816532 None:intergenic 30.0%
ACTTCACATAGAAATTGAGT+TGG - Chr2:6815045-6815064 MsG0280006828.01.T01:intron 30.0%
ATAAGAAATAAAAGGTGGTG+GGG + Chr2:6815314-6815333 None:intergenic 30.0%
ATGTGTTGAACCATTGTAAA+TGG + Chr2:6815173-6815192 None:intergenic 30.0%
CAAATAGAAGAAGATGATGA+AGG + Chr2:6813236-6813255 None:intergenic 30.0%
CAAGACCATAAGAAACTAAA+GGG + Chr2:6816512-6816531 None:intergenic 30.0%
CTTCATCATCTTCTTCTATT+TGG - Chr2:6813234-6813253 MsG0280006828.01.T01:CDS 30.0%
GAAACTATTGCAATGGTTTA+AGG - Chr2:6816839-6816858 MsG0280006828.01.T01:CDS 30.0%
GAATAAGAAATAAAAGGTGG+TGG + Chr2:6815316-6815335 None:intergenic 30.0%
GAATCGATGAAACTATTTGA+AGG + Chr2:6813099-6813118 None:intergenic 30.0%
GATACCAAAAGATCATGTTT+AGG - Chr2:6816447-6816466 MsG0280006828.01.T01:intron 30.0%
GATGAAAGACAAGTAAAGAT+GGG - Chr2:6816861-6816880 MsG0280006828.01.T01:CDS 30.0%
GCTATGTGAAGTTTAAATAC+AGG + Chr2:6813076-6813095 None:intergenic 30.0%
GTCAATTGTCTTAGGTAATT+TGG + Chr2:6816290-6816309 None:intergenic 30.0%
TGGTAAAATACAGTATAGGT+AGG - Chr2:6815964-6815983 MsG0280006828.01.T01:intron 30.0%
! AAGGAAAGCATGTATTAACT+TGG + Chr2:6816200-6816219 None:intergenic 30.0%
! ATACAAAGTGGTTATTGGTT+TGG - Chr2:6814697-6814716 MsG0280006828.01.T01:intron 30.0%
! CTGTTTCAATCTTTTCAACA+TGG + Chr2:6813400-6813419 None:intergenic 30.0%
! GTATTAACTTGGTCAAAGTT+TGG + Chr2:6816189-6816208 None:intergenic 30.0%
!! AAAGTTGATAACAGAACTTG+GGG - Chr2:6813583-6813602 MsG0280006828.01.T01:CDS 30.0%
!! AAGGAAAGTTCTAAGAGAAT+TGG + Chr2:6816537-6816556 None:intergenic 30.0%
!! AGAAAGTTGATAACAGAACT+TGG - Chr2:6813581-6813600 MsG0280006828.01.T01:CDS 30.0%
!! AGGAAAGTTCTAAGAGAATT+GGG + Chr2:6816536-6816555 None:intergenic 30.0%
!! CAAGGCATTTTCATATTGAA+AGG - Chr2:6815918-6815937 MsG0280006828.01.T01:intron 30.0%
!! GAAAGTTGATAACAGAACTT+GGG - Chr2:6813582-6813601 MsG0280006828.01.T01:CDS 30.0%
!!! TAACCACTGATTTTGACTTT+CGG - Chr2:6814651-6814670 MsG0280006828.01.T01:intron 30.0%
AACGTGTGTATTCTTTCTTC+AGG - Chr2:6816230-6816249 MsG0280006828.01.T01:intron 35.0%
AAGAAGATTCCTTGACTGTT+GGG + Chr2:6815727-6815746 None:intergenic 35.0%
AATATGAAAATGCCTTGCAG+TGG + Chr2:6815915-6815934 None:intergenic 35.0%
ACAAACACCAAGATTTGGAA+TGG - Chr2:6816899-6816918 MsG0280006828.01.T01:CDS 35.0%
ACACACGTTAGGTATAAAGA+AGG + Chr2:6816219-6816238 None:intergenic 35.0%
ACCAAAATGTCAAGAGTTGT+CGG - Chr2:6816689-6816708 MsG0280006828.01.T01:CDS 35.0%
AGCAATAGAGAACAACTCAA+TGG - Chr2:6816626-6816645 MsG0280006828.01.T01:CDS 35.0%
ATAAGAAATTGCATGCTGCT+AGG - Chr2:6815146-6815165 MsG0280006828.01.T01:intron 35.0%
CATTGTTGAAAGGTTGTACA+AGG + Chr2:6816475-6816494 None:intergenic 35.0%
GAAGAAAGAATACACACGTT+AGG + Chr2:6816230-6816249 None:intergenic 35.0%
GAGCAATGAAACTATTGCAA+TGG - Chr2:6816832-6816851 MsG0280006828.01.T01:CDS 35.0%
GATTGAAACAGTGCAAGTTA+TGG - Chr2:6813409-6813428 MsG0280006828.01.T01:CDS 35.0%
GGATGAAAGACAAGTAAAGA+TGG - Chr2:6816860-6816879 MsG0280006828.01.T01:CDS 35.0%
GTATTCTTTCTTCAGGAACA+AGG - Chr2:6816237-6816256 MsG0280006828.01.T01:intron 35.0%
GTGTTGGGAATTGAAAAAGT+GGG + Chr2:6815212-6815231 None:intergenic 35.0%
TAACTCTGCAAACTCACTTA+TGG + Chr2:6816329-6816348 None:intergenic 35.0%
TCTACAAGGTCAATTGTCTT+AGG + Chr2:6816298-6816317 None:intergenic 35.0%
TGAAAACAGAGAAAGAACAG+AGG + Chr2:6813138-6813157 None:intergenic 35.0%
TGTATTACACTCGCCAAAAA+CGG - Chr2:6815787-6815806 MsG0280006828.01.T01:intron 35.0%
TTAAGAGAGAGAAGATGATG+TGG + Chr2:6815236-6815255 None:intergenic 35.0%
TTCAACTTTAACCTCTCCAA+TGG - Chr2:6815267-6815286 MsG0280006828.01.T01:intron 35.0%
! AAACACCAAGATTTGGAATG+GGG - Chr2:6816901-6816920 MsG0280006828.01.T01:CDS 35.0%
! AGTGTTGGGAATTGAAAAAG+TGG + Chr2:6815213-6815232 None:intergenic 35.0%
! ATTGCTCTCTTTTGAGCTAA+AGG + Chr2:6816819-6816838 None:intergenic 35.0%
! CAAACACCAAGATTTGGAAT+GGG - Chr2:6816900-6816919 MsG0280006828.01.T01:CDS 35.0%
! CAAGAAATTGGTGATAGTTG+AGG - Chr2:6814605-6814624 MsG0280006828.01.T01:intron 35.0%
! GAGACTTGGTTCATTTGATT+TGG + Chr2:6815567-6815586 None:intergenic 35.0%
! TTATGGTTGACTCATCTACA+AGG + Chr2:6816312-6816331 None:intergenic 35.0%
!! AACTTGTTGGTCACGTTAAT+GGG - Chr2:6816597-6816616 MsG0280006828.01.T01:CDS 35.0%
!! ATGGCTTGTTGAATATGACA+TGG + Chr2:6815885-6815904 None:intergenic 35.0%
!! ATTCCAAATCTTGGTGTTTG+TGG + Chr2:6816900-6816919 None:intergenic 35.0%
!! ATTGAAAAAGTGGGTGTTGA+AGG + Chr2:6815203-6815222 None:intergenic 35.0%
!! GAAAAAGCTCTTGCTACTTT+AGG - Chr2:6816573-6816592 MsG0280006828.01.T01:CDS 35.0%
!! TAACTTGTTGGTCACGTTAA+TGG - Chr2:6816596-6816615 MsG0280006828.01.T01:CDS 35.0%
!! TGCTACTTTAGGTAACTTGT+TGG - Chr2:6816584-6816603 MsG0280006828.01.T01:CDS 35.0%
!! TTGAAAAAGTGGGTGTTGAA+GGG + Chr2:6815202-6815221 None:intergenic 35.0%
!! TTGGAATTTGATTGGTTTCC+CGG + Chr2:6815695-6815714 None:intergenic 35.0%
!!! AACCACTGATTTTGACTTTC+GGG - Chr2:6814652-6814671 MsG0280006828.01.T01:intron 35.0%
AACCAATGACTTGAGTTTGG+AGG + Chr2:6817045-6817064 None:intergenic 40.0%
ACAGTGAAGATGCTTCACTT+TGG - Chr2:6813491-6813510 MsG0280006828.01.T01:CDS 40.0%
ACTCAAAGGGCAAATGCAAA+TGG - Chr2:6817014-6817033 MsG0280006828.01.T01:five_prime_UTR 40.0%
AGAAGATTCCTTGACTGTTG+GGG + Chr2:6815726-6815745 None:intergenic 40.0%
CAAGAGCTGAACAATGCTAT+AGG + Chr2:6816120-6816139 None:intergenic 40.0%
CTCAAAGGGCAAATGCAAAT+GGG - Chr2:6817015-6817034 MsG0280006828.01.T01:five_prime_UTR 40.0%
GAAGAAGATTCCTTGACTGT+TGG + Chr2:6815728-6815747 None:intergenic 40.0%
GAGATAAAATGGCACAAGCT+AGG - Chr2:6816754-6816773 MsG0280006828.01.T01:CDS 40.0%
TACACTTTGGTTGTGACTTG+TGG + Chr2:6814781-6814800 None:intergenic 40.0%
TCAAAGGGCAAATGCAAATG+GGG - Chr2:6817016-6817035 MsG0280006828.01.T01:five_prime_UTR 40.0%
TGATGAAGGAGTTGACATGT+TGG + Chr2:6813222-6813241 None:intergenic 40.0%
! ACCGACAACTCTTGACATTT+TGG + Chr2:6816693-6816712 None:intergenic 40.0%
! AGAAGATGATGTGGAGTGTT+GGG + Chr2:6815227-6815246 None:intergenic 40.0%
! AGTTATGGAGAAGCATAAGG+AGG - Chr2:6813424-6813443 MsG0280006828.01.T01:CDS 40.0%
! CAATTTGAGTGGTCCGTTTT+TGG + Chr2:6815803-6815822 None:intergenic 40.0%
! GCAAGCCCTTTAGTTTCTTA+TGG - Chr2:6816504-6816523 MsG0280006828.01.T01:CDS 40.0%
! GCAAGTTATGGAGAAGCATA+AGG - Chr2:6813421-6813440 MsG0280006828.01.T01:CDS 40.0%
! GCTTGTTGAATATGACATGG+AGG + Chr2:6815882-6815901 None:intergenic 40.0%
! GGCTCCTAAACATGATCTTT+TGG + Chr2:6816454-6816473 None:intergenic 40.0%
!! AAAGTGGTTATTGGTTTGGC+GGG - Chr2:6814701-6814720 MsG0280006828.01.T01:intron 40.0%
!! ACCAAAATGATGGGCTACTA+GGG - Chr2:6815091-6815110 MsG0280006828.01.T01:intron 40.0%
!! ACGTTGATTTACCTAGCTGA+TGG - Chr2:6813671-6813690 MsG0280006828.01.T01:CDS 40.0%
!! CAAAGTGGTTATTGGTTTGG+CGG - Chr2:6814700-6814719 MsG0280006828.01.T01:intron 40.0%
!!! ACCACTGATTTTGACTTTCG+GGG - Chr2:6814653-6814672 MsG0280006828.01.T01:intron 40.0%
!!! GTTTTTGGCGAGTGTAATAC+AGG + Chr2:6815788-6815807 None:intergenic 40.0%
!!! TTTTGACTTTCGGGGGAATA+AGG - Chr2:6814661-6814680 MsG0280006828.01.T01:intron 40.0%
AAGCAGAGCTGAACAGAACA+AGG - Chr2:6813364-6813383 MsG0280006828.01.T01:CDS 45.0%
AATGGAGGCAGAGAGAATCA+TGG - Chr2:6814850-6814869 MsG0280006828.01.T01:intron 45.0%
ACGTGTAAGTTCCATCAGCT+AGG + Chr2:6813685-6813704 None:intergenic 45.0%
CAGGAACAAGGCTATGATAG+TGG - Chr2:6816249-6816268 MsG0280006828.01.T01:intron 45.0%
CAGTTTGGTTGTGGTTAGTG+TGG + Chr2:6814741-6814760 None:intergenic 45.0%
GAAGATTCCTTGACTGTTGG+GGG + Chr2:6815725-6815744 None:intergenic 45.0%
GACGCGTGTTGGAATTTGAT+TGG + Chr2:6815703-6815722 None:intergenic 45.0%
GAGAAGATGATGTGGAGTGT+TGG + Chr2:6815228-6815247 None:intergenic 45.0%
GCCATTAAACTACCACTGCA+AGG - Chr2:6815900-6815919 MsG0280006828.01.T01:intron 45.0%
GCCTTGCAGTGGTAGTTTAA+TGG + Chr2:6815904-6815923 None:intergenic 45.0%
GCTGCTAGGACCATTTACAA+TGG - Chr2:6815160-6815179 MsG0280006828.01.T01:intron 45.0%
GGTCCACAAACACCAAGATT+TGG - Chr2:6816894-6816913 MsG0280006828.01.T01:CDS 45.0%
GTAAAGATGGGACCACATTC+TGG - Chr2:6816873-6816892 MsG0280006828.01.T01:CDS 45.0%
GTCCTCCAAACTCAAGTCAT+TGG - Chr2:6817040-6817059 MsG0280006828.01.T01:five_prime_UTR 45.0%
TCTTCGATGACTAACCACCT+GGG + Chr2:6813639-6813658 None:intergenic 45.0%
TTCACGTTCTACTGCCTGTA+GGG + Chr2:6814912-6814931 None:intergenic 45.0%
TTTCACGTTCTACTGCCTGT+AGG + Chr2:6814913-6814932 None:intergenic 45.0%
! AGATGCTTCACTTTGGAAGC+TGG - Chr2:6813498-6813517 MsG0280006828.01.T01:CDS 45.0%
! GATGCTTCACTTTGGAAGCT+GGG - Chr2:6813499-6813518 MsG0280006828.01.T01:CDS 45.0%
! GGTGATAGTTGAGGCATCAT+GGG - Chr2:6814614-6814633 MsG0280006828.01.T01:intron 45.0%
! TATGGAGAAGCATAAGGAGG+AGG - Chr2:6813427-6813446 MsG0280006828.01.T01:CDS 45.0%
! TGGTGATAGTTGAGGCATCA+TGG - Chr2:6814613-6814632 MsG0280006828.01.T01:intron 45.0%
! TGGTTAGTCATCGAAGAGCA+GGG - Chr2:6813642-6813661 MsG0280006828.01.T01:CDS 45.0%
!! CACCAAAATGATGGGCTACT+AGG - Chr2:6815090-6815109 MsG0280006828.01.T01:intron 45.0%
!! CCAAAATGATGGGCTACTAG+GGG - Chr2:6815092-6815111 MsG0280006828.01.T01:intron 45.0%
!! GAACAAGGCTATGATAGTGG+AGG - Chr2:6816252-6816271 MsG0280006828.01.T01:intron 45.0%
!!! CCACTGATTTTGACTTTCGG+GGG - Chr2:6814654-6814673 MsG0280006828.01.T01:intron 45.0%
!!! AAATAATTTATTTTTTTGAA+AGG - Chr2:6814402-6814421 MsG0280006828.01.T01:intron 5.0%
AACAGAACTTGGGGTTGTGC+CGG - Chr2:6813592-6813611 MsG0280006828.01.T01:CDS 50.0%
ATTGTGGCACGAGCTTGAAC+TGG + Chr2:6813768-6813787 None:intergenic 50.0%
CCCCCGAAAGTCAAAATCAG+TGG + Chr2:6814657-6814676 None:intergenic 50.0%
CTCTTCGATGACTAACCACC+TGG + Chr2:6813640-6813659 None:intergenic 50.0%
GAAGCATAAGGAGGAGGAGA+GGG - Chr2:6813433-6813452 MsG0280006828.01.T01:CDS 50.0%
GCCACCATAGATACCAACAC+CGG + Chr2:6813614-6813633 None:intergenic 50.0%
GGTGACCCCATTCCAAATCT+TGG + Chr2:6816909-6816928 None:intergenic 50.0%
GGTGTTTGTGGACCAGAATG+TGG + Chr2:6816888-6816907 None:intergenic 50.0%
TCACGTTCTACTGCCTGTAG+GGG + Chr2:6814911-6814930 None:intergenic 50.0%
! AGAAGCATAAGGAGGAGGAG+AGG - Chr2:6813432-6813451 MsG0280006828.01.T01:CDS 50.0%
! CCCCTAGTAGCCCATCATTT+TGG + Chr2:6815095-6815114 None:intergenic 50.0%
! CTTTGGAAGCTGGGAAGAGA+AGG - Chr2:6813508-6813527 MsG0280006828.01.T01:CDS 50.0%
! GTGGTTAGTCATCGAAGAGC+AGG - Chr2:6813641-6813660 MsG0280006828.01.T01:CDS 50.0%
!! AAGGCTATGATAGTGGAGGC+AGG - Chr2:6816256-6816275 MsG0280006828.01.T01:intron 50.0%
!! TGTGCCGGTGTTGGTATCTA+TGG - Chr2:6813607-6813626 MsG0280006828.01.T01:CDS 50.0%
ACAGGGCGCGTAAATGACAG+AGG + Chr2:6815760-6815779 None:intergenic 55.0%
ACCACTCAAATTGCGACGCG+TGG - Chr2:6815810-6815829 MsG0280006828.01.T01:intron 55.0%
ATCTATGGTGGCTTCCCAGG+TGG - Chr2:6813622-6813641 MsG0280006828.01.T01:CDS 55.0%
CGGAGGATTCACAGCGCTTT+CGG + Chr2:6813325-6813344 None:intergenic 55.0%
GAGTTGAGTGTCTCCCCTAC+AGG - Chr2:6814895-6814914 MsG0280006828.01.T01:intron 55.0%
GGAGGATTCACAGCGCTTTC+GGG + Chr2:6813324-6813343 None:intergenic 55.0%
GGAGGCAGAGAGAATCATGG+TGG - Chr2:6814853-6814872 MsG0280006828.01.T01:intron 55.0%
GGCGCGTAAATGACAGAGGA+CGG + Chr2:6815756-6815775 None:intergenic 55.0%
GGTATCTATGGTGGCTTCCC+AGG - Chr2:6813619-6813638 MsG0280006828.01.T01:CDS 55.0%
TGGAAGCTGGGAAGAGAAGG+AGG - Chr2:6813511-6813530 MsG0280006828.01.T01:CDS 55.0%
! CTGTCATTTACGCGCCCTGT+CGG - Chr2:6815760-6815779 MsG0280006828.01.T01:intron 55.0%
!! ACAGCGCTTTCGGGTTGCTT+TGG + Chr2:6813315-6813334 None:intergenic 55.0%
!! AGTGTAATACAGGCGCCGAC+AGG + Chr2:6815778-6815797 None:intergenic 55.0%
!! GCCGGTGTTGGTATCTATGG+TGG - Chr2:6813610-6813629 MsG0280006828.01.T01:CDS 55.0%
!! GTGTAATACAGGCGCCGACA+GGG + Chr2:6815777-6815796 None:intergenic 55.0%
GCATAAGGAGGAGGAGAGGG+AGG - Chr2:6813436-6813455 MsG0280006828.01.T01:CDS 60.0%
GCCACGCGTCGCAATTTGAG+TGG + Chr2:6815814-6815833 None:intergenic 60.0%
TAAGGAGGAGGAGAGGGAGG+AGG - Chr2:6813439-6813458 MsG0280006828.01.T01:CDS 60.0%
! ACTTGGGGTTGTGCCGGTGT+TGG - Chr2:6813598-6813617 MsG0280006828.01.T01:CDS 60.0%
CACGCGTCCCCCAACAGTCA+AGG - Chr2:6815715-6815734 MsG0280006828.01.T01:intron 65.0%
GACTGTTGGGGGACGCGTGT+TGG + Chr2:6815714-6815733 None:intergenic 65.0%
GGAGGAGGAGAGGGAGGAGG+TGG - Chr2:6813442-6813461 MsG0280006828.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 6813066 6817097 6813066 ID=MsG0280006828.01;Name=MsG0280006828.01
Chr2 mRNA 6813066 6817097 6813066 ID=MsG0280006828.01.T01;Parent=MsG0280006828.01;Name=MsG0280006828.01.T01;_AED=0.49;_eAED=0.49;_QI=158|0.5|0.33|1|1|1|3|0|395
Chr2 exon 6813066 6813694 6813066 ID=MsG0280006828.01.T01:exon:2884;Parent=MsG0280006828.01.T01
Chr2 exon 6813832 6813911 6813832 ID=MsG0280006828.01.T01:exon:2883;Parent=MsG0280006828.01.T01
Chr2 exon 6816461 6817097 6816461 ID=MsG0280006828.01.T01:exon:2882;Parent=MsG0280006828.01.T01
Chr2 five_prime_UTR 6816940 6817097 6816940 ID=MsG0280006828.01.T01:five_prime_utr;Parent=MsG0280006828.01.T01
Chr2 CDS 6816461 6816939 6816461 ID=MsG0280006828.01.T01:cds;Parent=MsG0280006828.01.T01
Chr2 CDS 6813832 6813911 6813832 ID=MsG0280006828.01.T01:cds;Parent=MsG0280006828.01.T01
Chr2 CDS 6813066 6813694 6813066 ID=MsG0280006828.01.T01:cds;Parent=MsG0280006828.01.T01
Gene Sequence

>MsG0280006828.01.T01

ATGTCAACTCCTTCATCATCTTCTTCTATTTGGGTACTGTCTAACATAAAGCTTCAATTCTTTACTCGTATCAAACGGTTTCTTCAATCCAAAGCAACCCGAAAGCGCTGTGAATCCTCCGATTATTTAAACAAAGAAAAAAGCAGAGCTGAACAGAACAAGGTTGAACAGAACCATGTTGAAAAGATTGAAACAGTGCAAGTTATGGAGAAGCATAAGGAGGAGGAGAGGGAGGAGGTGGAAGAAACTGAAATTTTGTTGCAAAAGACAGTGAAGATGCTTCACTTTGGAAGCTGGGAAGAGAAGGAGGTAGCTGCAAAAGAGATTGAAAGTTTAGTTAAACAAGATGTTAAAGTAAGAAAGTTGATAACAGAACTTGGGGTTGTGCCGGTGTTGGTATCTATGGTGGCTTCCCAGGTGGTTAGTCATCGAAGAGCAGGGTTGACGACGTTGATTTACCTAGCTGATGGAACTTACACGAACAAGGCTATGATAGTGGAGGCAGGAATATTATCCAAATTACCTAAGACAATTGACCTTGTAGATGAGTCAACCATAAGAGCCTTGTACAACCTTTCAACAATGTTAGAAAATGCAAGCCCTTTAGTTTCTTATGGTCTTGTCCCAATTCTCTTAGAACTTTCCTTAGTCAAAGAAATTTCAGAAAAAGCTCTTGCTACTTTAGGTAACTTGTTGGTCACGTTAATGGGTAAAAAAGCAATAGAGAACAACTCAATGGTGCCACAAAATTTTGTTGAGATTTTGTCATGGGAAGATAAACCAAAATGTCAAGAGTTGTCGGTTTATATTTTGATGATTTTAGCACATCAAAGTTCATCACAAAGAGATAAAATGGCACAAGCTAGGATTGTTCCTATACTTCTTGAAGTTGTTTTATTGGGGAGTCCTTTAGCTCAAAAGAGAGCAATGAAACTATTGCAATGGTTTAAGGATGAAAGACAAGTAAAGATGGGACCACATTCTGGTCCACAAACACCAAGATTTGGAATGGGGTCACCTTTAAATCAAAGAGATACAAATGAAGGGAAAAAATTGATGAAGAGTTTGGTGAAACAAAGCTTGCATAAGAATTTGGAAATAATAACTCAAAGGGCAAATGCAAATGGGGAGTCCTCCAAACTCAAGTCATTGGTTATTAGCACAAGTTCCAAGAGCTTGCCTTATTGA
Protein sequence

>MsG0280006828.01.T01

MSTPSSSSSIWVLSNIKLQFFTRIKRFLQSKATRKRCESSDYLNKEKSRAEQNKVEQNHVEKIETVQVMEKHKEEEREEVEETEILLQKTVKMLHFGSWEEKEVAAKEIESLVKQDVKVRKLITELGVVPVLVSMVASQVVSHRRAGLTTLIYLADGTYTNKAMIVEAGILSKLPKTIDLVDESTIRALYNLSTMLENASPLVSYGLVPILLELSLVKEISEKALATLGNLLVTLMGKKAIENNSMVPQNFVEILSWEDKPKCQELSVYILMILAHQSSSQRDKMAQARIVPILLEVVLLGSPLAQKRAMKLLQWFKDERQVKMGPHSGPQTPRFGMGSPLNQRDTNEGKKLMKSLVKQSLHKNLEIITQRANANGESSKLKSLVISTSSKSLPY*