Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021001.01.T01 | XP_013456124.1 | 79.264 | 299 | 22 | 2 | 4 | 262 | 9 | 307 | 2.81E-163 | 464 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021001.01.T01 | Q9H201 | 35.714 | 140 | 81 | 2 | 28 | 159 | 20 | 158 | 3.75E-18 | 87 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021001.01.T01 | A0A072UWA8 | 79.264 | 299 | 22 | 2 | 4 | 262 | 9 | 307 | 1.34e-163 | 464 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048302.01 | MsG0480021001.01 | 0.855380 | 6.560510e-62 | 1.511885e-58 |
| MsG0080048692.01 | MsG0480021001.01 | -0.832091 | 1.151819e-55 | 1.274239e-52 |
| MsG0080049042.01 | MsG0480021001.01 | 0.806355 | 8.565390e-50 | 4.639073e-47 |
| MsG0080049076.01 | MsG0480021001.01 | -0.802725 | 4.894451e-49 | 2.415282e-46 |
| MsG0180000337.01 | MsG0480021001.01 | 0.804106 | 2.532544e-49 | 1.294716e-46 |
| MsG0180002426.01 | MsG0480021001.01 | -0.800667 | 1.294073e-48 | 6.060818e-46 |
| MsG0180002546.01 | MsG0480021001.01 | -0.831280 | 1.825489e-55 | 1.971609e-52 |
| MsG0180003470.01 | MsG0480021001.01 | 0.814122 | 1.809502e-51 | 1.203778e-48 |
| MsG0180003898.01 | MsG0480021001.01 | 0.818631 | 1.772451e-52 | 1.333777e-49 |
| MsG0180004393.01 | MsG0480021001.01 | 0.808329 | 3.267359e-50 | 1.862963e-47 |
| MsG0180005817.01 | MsG0480021001.01 | -0.803133 | 4.031497e-49 | 2.010070e-46 |
| MsG0380012008.01 | MsG0480021001.01 | 0.899623 | 1.649498e-77 | 2.055908e-73 |
| MsG0380013945.01 | MsG0480021001.01 | -0.818115 | 2.320107e-52 | 1.721263e-49 |
| MsG0380013953.01 | MsG0480021001.01 | -0.805315 | 1.416831e-49 | 7.472102e-47 |
| MsG0380013957.01 | MsG0480021001.01 | -0.803057 | 4.180616e-49 | 2.080302e-46 |
| MsG0380013967.01 | MsG0480021001.01 | -0.803793 | 2.942149e-49 | 1.492075e-46 |
| MsG0380013971.01 | MsG0480021001.01 | -0.807055 | 6.094482e-50 | 3.360862e-47 |
| MsG0380013977.01 | MsG0480021001.01 | -0.807144 | 5.834859e-50 | 3.225107e-47 |
| MsG0380014005.01 | MsG0480021001.01 | -0.804714 | 1.891676e-49 | 9.823630e-47 |
| MsG0380014023.01 | MsG0480021001.01 | -0.800027 | 1.746921e-48 | 8.049742e-46 |
| MsG0380014032.01 | MsG0480021001.01 | -0.825804 | 3.838261e-54 | 3.535372e-51 |
| MsG0380014033.01 | MsG0480021001.01 | -0.826430 | 2.724692e-54 | 2.554784e-51 |
| MsG0480019017.01 | MsG0480021001.01 | 0.825678 | 4.111846e-54 | 3.773613e-51 |
| MsG0480019975.01 | MsG0480021001.01 | -0.822667 | 2.095625e-53 | 1.765538e-50 |
| MsG0480020957.01 | MsG0480021001.01 | 0.882009 | 1.492160e-70 | 8.938334e-67 |
| MsG0480020958.01 | MsG0480021001.01 | 0.843644 | 1.234156e-58 | 1.943721e-55 |
| MsG0480020986.01 | MsG0480021001.01 | 0.899820 | 1.356481e-77 | 1.705517e-73 |
| MsG0480021001.01 | MsG0480021912.01 | -0.817375 | 3.407559e-52 | 2.477336e-49 |
| MsG0480021001.01 | MsG0480022125.01 | 0.802023 | 6.830128e-49 | 3.310482e-46 |
| MsG0480021001.01 | MsG0480022508.01 | 0.800319 | 1.524194e-48 | 7.075796e-46 |
| MsG0480021001.01 | MsG0480022530.01 | 0.827339 | 1.652756e-54 | 1.591146e-51 |
| MsG0480021001.01 | MsG0480023318.01 | 0.814235 | 1.708619e-51 | 1.140177e-48 |
| MsG0480021001.01 | MsG0580024467.01 | 0.866836 | 2.129860e-65 | 7.281285e-62 |
| MsG0480021001.01 | MsG0580025420.01 | 0.814534 | 1.466869e-51 | 9.868450e-49 |
| MsG0480021001.01 | MsG0580025870.01 | 0.836202 | 1.074499e-56 | 1.344793e-53 |
| MsG0480021001.01 | MsG0580029583.01 | 0.841379 | 4.925546e-58 | 7.224318e-55 |
| MsG0480021001.01 | MsG0680035841.01 | 0.826088 | 3.285809e-54 | 3.050845e-51 |
| MsG0480021001.01 | MsG0680035842.01 | 0.841610 | 4.281525e-58 | 6.325377e-55 |
| MsG0480021001.01 | MsG0780037751.01 | 0.808839 | 2.542876e-50 | 1.469221e-47 |
| MsG0480021001.01 | MsG0780038857.01 | 0.814652 | 1.381693e-51 | 9.324701e-49 |
| MsG0480021001.01 | MsG0780039450.01 | 0.807578 | 4.721054e-50 | 2.638972e-47 |
| MsG0480021001.01 | MsG0780039576.01 | 0.818742 | 1.672589e-52 | 1.262521e-49 |
| MsG0480021001.01 | MsG0780039968.01 | 0.802373 | 5.785001e-49 | 2.829253e-46 |
| MsG0480021001.01 | MsG0780040480.01 | 0.812494 | 4.121043e-51 | 2.624207e-48 |
| MsG0480021001.01 | MsG0780040553.01 | 0.801415 | 9.102252e-49 | 4.344322e-46 |
| MsG0480021001.01 | MsG0880042304.01 | 0.814182 | 1.754655e-51 | 1.169236e-48 |
| MsG0480021001.01 | MsG0880042832.01 | 0.829085 | 6.271689e-55 | 6.352285e-52 |
| MsG0480021001.01 | MsG0880043109.01 | 0.809016 | 2.330579e-50 | 1.352957e-47 |
| MsG0480021001.01 | MsG0880043246.01 | 0.805272 | 1.446473e-49 | 7.619767e-47 |
| MsG0480021001.01 | MsG0880043262.01 | 0.811220 | 7.807367e-51 | 4.805081e-48 |
| MsG0480021001.01 | MsG0880043824.01 | 0.824094 | 9.723378e-54 | 8.528315e-51 |
| MsG0480021001.01 | MsG0880044855.01 | 0.850488 | 1.644439e-60 | 3.226037e-57 |
| MsG0480021001.01 | MsG0880045188.01 | -0.805125 | 1.552294e-49 | 8.146885e-47 |
| MsG0480021001.01 | MsG0880045861.01 | 0.819767 | 9.769256e-53 | 7.587493e-50 |
| MsG0480021001.01 | MsG0880046753.01 | 0.810714 | 1.004956e-50 | 6.102623e-48 |
| MsG0380015115.01 | MsG0480021001.01 | 0.805420 | 1.346704e-49 | 7.121370e-47 |
| MsG0380016270.01 | MsG0480021001.01 | 0.833206 | 6.091176e-56 | 6.966427e-53 |
| MsG0380016524.01 | MsG0480021001.01 | 0.800717 | 1.264464e-48 | 5.929271e-46 |
| MsG0380018026.01 | MsG0480021001.01 | 0.855546 | 5.867052e-62 | 1.359343e-58 |
| MsG0280006828.01 | MsG0480021001.01 | 0.817171 | 3.787470e-52 | 2.738122e-49 |
| MsG0280007759.01 | MsG0480021001.01 | 0.812736 | 3.649436e-51 | 2.338672e-48 |
| MsG0280007760.01 | MsG0480021001.01 | 0.808891 | 2.478788e-50 | 1.434147e-47 |
| MsG0280009971.01 | MsG0480021001.01 | 0.822530 | 2.254604e-53 | 1.892181e-50 |
| MsG0280010296.01 | MsG0480021001.01 | 0.826783 | 2.244298e-54 | 2.125518e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021001.01.T01 | MTR_4g063895 | 79.264 | 299 | 22 | 2 | 4 | 262 | 9 | 307 | 3.41e-167 | 464 |
| MsG0480021001.01.T01 | MTR_4g063895 | 79.412 | 272 | 16 | 2 | 31 | 262 | 1 | 272 | 1.31e-152 | 426 |
| MsG0480021001.01.T01 | MTR_1g075760 | 42.581 | 155 | 83 | 1 | 12 | 160 | 18 | 172 | 2.69e-40 | 141 |
| MsG0480021001.01.T01 | MTR_7g006280 | 30.631 | 222 | 130 | 6 | 29 | 236 | 27 | 238 | 1.49e-19 | 88.2 |
| MsG0480021001.01.T01 | MTR_1g016980 | 32.540 | 126 | 84 | 1 | 20 | 145 | 20 | 144 | 4.60e-16 | 77.8 |
| MsG0480021001.01.T01 | MTR_7g006100 | 31.788 | 151 | 90 | 3 | 34 | 183 | 615 | 753 | 3.04e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021001.01.T01 | AT3G46540 | 68.382 | 136 | 43 | 0 | 4 | 139 | 22 | 157 | 5.79e-63 | 200 |
| MsG0480021001.01.T01 | AT3G46540 | 68.382 | 136 | 43 | 0 | 4 | 139 | 10 | 145 | 7.26e-63 | 199 |
| MsG0480021001.01.T01 | AT3G46540 | 68.807 | 109 | 34 | 0 | 31 | 139 | 1 | 109 | 2.23e-50 | 166 |
| MsG0480021001.01.T01 | AT1G08670 | 33.898 | 236 | 122 | 3 | 4 | 239 | 14 | 215 | 5.92e-40 | 138 |
| MsG0480021001.01.T01 | AT3G23350 | 44.776 | 134 | 72 | 1 | 12 | 143 | 19 | 152 | 3.11e-37 | 133 |
| MsG0480021001.01.T01 | AT3G23350 | 44.776 | 134 | 72 | 1 | 12 | 143 | 18 | 151 | 3.20e-37 | 133 |
| MsG0480021001.01.T01 | AT1G08670 | 30.729 | 192 | 99 | 3 | 48 | 239 | 1 | 158 | 3.03e-27 | 103 |
| MsG0480021001.01.T01 | AT3G59290 | 30.093 | 216 | 142 | 5 | 29 | 237 | 27 | 240 | 5.44e-18 | 84.0 |
| MsG0480021001.01.T01 | AT2G43160 | 28.652 | 178 | 103 | 3 | 29 | 183 | 27 | 203 | 1.24e-16 | 79.7 |
| MsG0480021001.01.T01 | AT2G43160 | 33.571 | 140 | 89 | 2 | 25 | 161 | 23 | 161 | 3.33e-16 | 78.6 |
| MsG0480021001.01.T01 | AT2G43160 | 33.571 | 140 | 89 | 2 | 25 | 161 | 23 | 161 | 3.33e-16 | 78.6 |
| MsG0480021001.01.T01 | AT2G43160 | 33.571 | 140 | 89 | 2 | 25 | 161 | 23 | 161 | 3.33e-16 | 78.6 |
| MsG0480021001.01.T01 | AT2G43160 | 33.571 | 140 | 89 | 2 | 25 | 161 | 23 | 161 | 3.33e-16 | 78.6 |
| MsG0480021001.01.T01 | AT5G11710 | 30.645 | 124 | 85 | 1 | 20 | 143 | 20 | 142 | 5.37e-15 | 74.7 |
| MsG0480021001.01.T01 | AT5G11710 | 30.645 | 124 | 85 | 1 | 20 | 143 | 20 | 142 | 5.37e-15 | 74.7 |
| MsG0480021001.01.T01 | AT5G11710 | 30.645 | 124 | 85 | 1 | 20 | 143 | 20 | 142 | 5.37e-15 | 74.7 |
Find 58 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCCTCTGCTACACTTTC+TGG | 0.104086 | 4:+51899767 | None:intergenic |
| CATTTCTGTTGTTGAATTAA+AGG | 0.166107 | 4:+51898926 | None:intergenic |
| ATCAAGTTCTAAAGAAAATA+TGG | 0.298192 | 4:-51899057 | MsG0480021001.01.T01:CDS |
| GCGGAGAAGACGATTCTTCT+AGG | 0.298733 | 4:-51898980 | MsG0480021001.01.T01:CDS |
| TGGAGAGTCAGAATCACTTT+TGG | 0.312508 | 4:-51899006 | MsG0480021001.01.T01:CDS |
| CTAAATTTGAAAAGAAGAAT+TGG | 0.317894 | 4:-51899841 | MsG0480021001.01.T01:CDS |
| ACCCGTTCTGATCAATATAT+TGG | 0.319311 | 4:+51899705 | None:intergenic |
| ATTTCTGTTGTTGAATTAAA+GGG | 0.325448 | 4:+51898927 | None:intergenic |
| GACAATTTGCAGGTTCAATT+GGG | 0.329268 | 4:-51899395 | MsG0480021001.01.T01:intron |
| TTATAGAGATTCTACATAAA+AGG | 0.331852 | 4:-51900106 | MsG0480021001.01.T01:intron |
| TGACAATTTGCAGGTTCAAT+TGG | 0.347533 | 4:-51899396 | MsG0480021001.01.T01:intron |
| ATCATCATCTTTGTATATCA+TGG | 0.354388 | 4:+51899112 | None:intergenic |
| AATTCATCTTTCTCAACCTT+GGG | 0.396896 | 4:-51899146 | MsG0480021001.01.T01:CDS |
| AAGAAAATATGGAACCTAGT+AGG | 0.398302 | 4:-51899046 | MsG0480021001.01.T01:CDS |
| TAATTCATCTTTCTCAACCT+TGG | 0.418793 | 4:-51899147 | MsG0480021001.01.T01:CDS |
| CTGATTTCTTTCTCACAGTT+AGG | 0.420075 | 4:+51899371 | None:intergenic |
| AGAGAGAGTAATGAAACTAT+TGG | 0.421249 | 4:-51899350 | MsG0480021001.01.T01:CDS |
| CTTGAGCATTTGTTGACTCA+TGG | 0.422333 | 4:-51899791 | MsG0480021001.01.T01:CDS |
| TCCAATATATTGATCAGAAC+GGG | 0.423953 | 4:-51899706 | MsG0480021001.01.T01:intron |
| ATGATAGAAGAGGCAACTAA+TGG | 0.435665 | 4:-51900206 | MsG0480021001.01.T01:CDS |
| AAGACGATTCTTCTAGGCTT+GGG | 0.437856 | 4:-51898974 | MsG0480021001.01.T01:CDS |
| TCCTTGCTTTCTGCTAGAGA+TGG | 0.439226 | 4:-51898891 | MsG0480021001.01.T01:CDS |
| ATATACAAAGATGATGATAT+AGG | 0.448838 | 4:-51899107 | MsG0480021001.01.T01:CDS |
| AAGTTCCACACCTCCCTACT+AGG | 0.456583 | 4:+51899032 | None:intergenic |
| GAAGACGATTCTTCTAGGCT+TGG | 0.466472 | 4:-51898975 | MsG0480021001.01.T01:CDS |
| AGAAAATATGGAACCTAGTA+GGG | 0.473708 | 4:-51899045 | MsG0480021001.01.T01:CDS |
| GATCTGAGGGTTACAGTAGT+TGG | 0.473866 | 4:+51900170 | None:intergenic |
| CACAATCAAGGAATTGTAAG+AGG | 0.479866 | 4:+51899814 | None:intergenic |
| TAGTAGGGAGGTGTGGAACT+TGG | 0.490662 | 4:-51899030 | MsG0480021001.01.T01:CDS |
| CTCTTGATAACCTTCTACAT+TGG | 0.492948 | 4:+51899294 | None:intergenic |
| GTTACAGTAGTTGGTGCCCA+TGG | 0.502809 | 4:+51900179 | None:intergenic |
| AGGGAGGTGTGGAACTTGGA+TGG | 0.503033 | 4:-51899026 | MsG0480021001.01.T01:CDS |
| TAACAAGCTCACAGTTCTGC+AGG | 0.506386 | 4:+51900362 | None:intergenic |
| CAAATGCTCAAGCACAATCA+AGG | 0.506589 | 4:+51899802 | None:intergenic |
| TATATTGGAAACCTTTCAGC+TGG | 0.516997 | 4:+51899720 | None:intergenic |
| AGCCTTTGAAATTGATCTGA+GGG | 0.520257 | 4:+51900157 | None:intergenic |
| AGGCAACTAATGGAAATCCA+TGG | 0.532106 | 4:-51900196 | MsG0480021001.01.T01:CDS |
| GTAATGAAACTATTGGAAGA+AGG | 0.539452 | 4:-51899343 | MsG0480021001.01.T01:CDS |
| GCTAGAGATGGAATACTACA+AGG | 0.551404 | 4:-51898879 | MsG0480021001.01.T01:CDS |
| CAGCCTTTGAAATTGATCTG+AGG | 0.552074 | 4:+51900156 | None:intergenic |
| TTCCAATATATTGATCAGAA+CGG | 0.554896 | 4:-51899707 | MsG0480021001.01.T01:CDS |
| GATGTTATTGACCAGCTGAA+AGG | 0.568995 | 4:-51899731 | MsG0480021001.01.T01:CDS |
| TCCATCTCTAGCAGAAAGCA+AGG | 0.572809 | 4:+51898890 | None:intergenic |
| TTTCTGTTGTTGAATTAAAG+GGG | 0.580526 | 4:+51898928 | None:intergenic |
| AATTTGAAAAGAAGAATTGG+AGG | 0.586374 | 4:-51899838 | MsG0480021001.01.T01:CDS |
| ACAATTTGCAGGTTCAATTG+GGG | 0.587617 | 4:-51899394 | MsG0480021001.01.T01:intron |
| TTGAGCTAGATGATTATAGG+AGG | 0.590229 | 4:-51900130 | MsG0480021001.01.T01:CDS |
| GGCAACTAATGGAAATCCAT+GGG | 0.593719 | 4:-51900195 | MsG0480021001.01.T01:CDS |
| AACCCTCAGATCAATTTCAA+AGG | 0.602620 | 4:-51900159 | MsG0480021001.01.T01:CDS |
| ATTTGAAAAGAAGAATTGGA+GGG | 0.607233 | 4:-51899837 | MsG0480021001.01.T01:CDS |
| ACGATTCTTCTAGGCTTGGG+AGG | 0.614811 | 4:-51898971 | MsG0480021001.01.T01:CDS |
| GGAAGAAGGAAATCTTCTCA+AGG | 0.620593 | 4:-51899329 | MsG0480021001.01.T01:CDS |
| TGGAACCTAGTAGGGAGGTG+TGG | 0.635291 | 4:-51899037 | MsG0480021001.01.T01:CDS |
| TGGACCAGAAAGTGTAGCAG+AGG | 0.637626 | 4:-51899771 | MsG0480021001.01.T01:CDS |
| CAATGTAGAAGGTTATCAAG+AGG | 0.650694 | 4:-51899293 | MsG0480021001.01.T01:intron |
| AAATATGGAACCTAGTAGGG+AGG | 0.663757 | 4:-51899042 | MsG0480021001.01.T01:CDS |
| CTAGAGATGGAATACTACAA+GGG | 0.670524 | 4:-51898878 | MsG0480021001.01.T01:CDS |
| TCTTTGAAGAATGATAGAAG+AGG | 0.674445 | 4:-51900216 | MsG0480021001.01.T01:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTGTGTAAAAAAAATA+AGG | + | Chr4:51899711-51899730 | None:intergenic | 10.0% |
| !! | AATTGTTTACCTAAAAAATT+TGG | - | Chr4:51899910-51899929 | MsG0480021001.01.T01:intron | 15.0% |
| !!! | TTTTTAGGTAAACAATTTTT+TGG | + | Chr4:51899907-51899926 | None:intergenic | 15.0% |
| !! | ATATACAAAGATGATGATAT+AGG | - | Chr4:51900274-51900293 | MsG0480021001.01.T01:intron | 20.0% |
| !! | ATGCTAAGTAAAAAAAATGA+GGG | + | Chr4:51899313-51899332 | None:intergenic | 20.0% |
| !! | ATTTCTGTTGTTGAATTAAA+GGG | + | Chr4:51900457-51900476 | None:intergenic | 20.0% |
| !! | CTAAATTTGAAAAGAAGAAT+TGG | - | Chr4:51899540-51899559 | MsG0480021001.01.T01:intron | 20.0% |
| !! | TTATAGAGATTCTACATAAA+AGG | - | Chr4:51899275-51899294 | MsG0480021001.01.T01:intron | 20.0% |
| !!! | ATCAAGTTCTAAAGAAAATA+TGG | - | Chr4:51900324-51900343 | MsG0480021001.01.T01:intron | 20.0% |
| !!! | ATTCAATGACCAAATTTTTT+AGG | + | Chr4:51899922-51899941 | None:intergenic | 20.0% |
| !!! | GATACAATTCTAAAATAGAT+TGG | - | Chr4:51899517-51899536 | MsG0480021001.01.T01:intron | 20.0% |
| !!! | GTTTTTTGAATTCATAGAAA+GGG | + | Chr4:51898936-51898955 | None:intergenic | 20.0% |
| !!! | TGTTTTTTGAATTCATAGAA+AGG | + | Chr4:51898937-51898956 | None:intergenic | 20.0% |
| !!! | TTTTTTGAATTCATAGAAAG+GGG | + | Chr4:51898935-51898954 | None:intergenic | 20.0% |
| ! | AAAGAAAAAACCAATGTAGA+AGG | - | Chr4:51900077-51900096 | MsG0480021001.01.T01:intron | 25.0% |
| ! | AAGATATTATGACAATTTGC+AGG | - | Chr4:51899976-51899995 | MsG0480021001.01.T01:intron | 25.0% |
| ! | AATTTGAAAAGAAGAATTGG+AGG | - | Chr4:51899543-51899562 | MsG0480021001.01.T01:intron | 25.0% |
| ! | ATCATCATCTTTGTATATCA+TGG | + | Chr4:51900272-51900291 | None:intergenic | 25.0% |
| ! | ATTTGAAAAGAAGAATTGGA+GGG | - | Chr4:51899544-51899563 | MsG0480021001.01.T01:intron | 25.0% |
| ! | CATGCTAAGTAAAAAAAATG+AGG | + | Chr4:51899314-51899333 | None:intergenic | 25.0% |
| ! | CATTTCTGTTGTTGAATTAA+AGG | + | Chr4:51900458-51900477 | None:intergenic | 25.0% |
| ! | TGCTAAGTAAAAAAAATGAG+GGG | + | Chr4:51899312-51899331 | None:intergenic | 25.0% |
| ! | TGTTACTAAATGAATCATGA+TGG | - | Chr4:51899484-51899503 | MsG0480021001.01.T01:intron | 25.0% |
| ! | TTCCAATATATTGATCAGAA+CGG | - | Chr4:51899674-51899693 | MsG0480021001.01.T01:intron | 25.0% |
| ! | TTTCTGTTGTTGAATTAAAG+GGG | + | Chr4:51900456-51900475 | None:intergenic | 25.0% |
| !! | TATCGAAAACAATTTTGTCA+TGG | - | Chr4:51899414-51899433 | MsG0480021001.01.T01:intron | 25.0% |
| AAGAAAATATGGAACCTAGT+AGG | - | Chr4:51900335-51900354 | MsG0480021001.01.T01:intron | 30.0% | |
| AATTCATCTTTCTCAACCTT+GGG | - | Chr4:51900235-51900254 | MsG0480021001.01.T01:intron | 30.0% | |
| AGAAAATATGGAACCTAGTA+GGG | - | Chr4:51900336-51900355 | MsG0480021001.01.T01:intron | 30.0% | |
| AGAGAGAGTAATGAAACTAT+TGG | - | Chr4:51900031-51900050 | MsG0480021001.01.T01:intron | 30.0% | |
| ATATCCAAAACTATAGCTCT+AGG | - | Chr4:51899114-51899133 | MsG0480021001.01.T01:CDS | 30.0% | |
| GCAATCAAATTCGATATATG+TGG | - | Chr4:51899378-51899397 | MsG0480021001.01.T01:CDS | 30.0% | |
| GCTAAGTAAAAAAAATGAGG+GGG | + | Chr4:51899311-51899330 | None:intergenic | 30.0% | |
| GTAATGAAACTATTGGAAGA+AGG | - | Chr4:51900038-51900057 | MsG0480021001.01.T01:intron | 30.0% | |
| GTGATTAATGTGTTTCGATT+AGG | - | Chr4:51899756-51899775 | MsG0480021001.01.T01:CDS | 30.0% | |
| TAATTCATCTTTCTCAACCT+TGG | - | Chr4:51900234-51900253 | MsG0480021001.01.T01:intron | 30.0% | |
| TAGTAACAAAGAAGTGATCA+CGG | + | Chr4:51899472-51899491 | None:intergenic | 30.0% | |
| TCCAATATATTGATCAGAAC+GGG | - | Chr4:51899675-51899694 | MsG0480021001.01.T01:intron | 30.0% | |
| ! | AAATCCTAGAGCTATAGTTT+TGG | + | Chr4:51899121-51899140 | None:intergenic | 30.0% |
| ! | AGTCTTGATTTTCTCTTTTG+AGG | + | Chr4:51898972-51898991 | None:intergenic | 30.0% |
| ! | CTTTTGAGCTAGATGATTAT+AGG | - | Chr4:51899248-51899267 | MsG0480021001.01.T01:intron | 30.0% |
| ! | GCAATTTAAAACCTTGGAAA+TGG | + | Chr4:51899341-51899360 | None:intergenic | 30.0% |
| ! | TCTTTGAAGAATGATAGAAG+AGG | - | Chr4:51899165-51899184 | MsG0480021001.01.T01:intron | 30.0% |
| AAATCATTGCCAACCACATT+CGG | - | Chr4:51900170-51900189 | MsG0480021001.01.T01:CDS | 35.0% | |
| AACCCTCAGATCAATTTCAA+AGG | - | Chr4:51899222-51899241 | MsG0480021001.01.T01:intron | 35.0% | |
| ACAATTTGCAGGTTCAATTG+GGG | - | Chr4:51899987-51900006 | MsG0480021001.01.T01:intron | 35.0% | |
| ACCCGTTCTGATCAATATAT+TGG | + | Chr4:51899679-51899698 | None:intergenic | 35.0% | |
| ATGATAGAAGAGGCAACTAA+TGG | - | Chr4:51899175-51899194 | MsG0480021001.01.T01:intron | 35.0% | |
| CAATGTAGAAGGTTATCAAG+AGG | - | Chr4:51900088-51900107 | MsG0480021001.01.T01:intron | 35.0% | |
| CACAATCAAGGAATTGTAAG+AGG | + | Chr4:51899570-51899589 | None:intergenic | 35.0% | |
| CTAGAGATGGAATACTACAA+GGG | - | Chr4:51900503-51900522 | MsG0480021001.01.T01:five_prime_UTR | 35.0% | |
| CTGATTTCTTTCTCACAGTT+AGG | + | Chr4:51900013-51900032 | None:intergenic | 35.0% | |
| GACAATTTGCAGGTTCAATT+GGG | - | Chr4:51899986-51900005 | MsG0480021001.01.T01:intron | 35.0% | |
| TATATTGGAAACCTTTCAGC+TGG | + | Chr4:51899664-51899683 | None:intergenic | 35.0% | |
| TGACAATTTGCAGGTTCAAT+TGG | - | Chr4:51899985-51900004 | MsG0480021001.01.T01:intron | 35.0% | |
| TTGAGCTAGATGATTATAGG+AGG | - | Chr4:51899251-51899270 | MsG0480021001.01.T01:intron | 35.0% | |
| ! | CATGGTTTTCATATTACCCA+AGG | + | Chr4:51900254-51900273 | None:intergenic | 35.0% |
| ! | CTCTTGATAACCTTCTACAT+TGG | + | Chr4:51900090-51900109 | None:intergenic | 35.0% |
| ! | GAATTTCTTCCAGTTGATAC+TGG | - | Chr4:51899938-51899957 | MsG0480021001.01.T01:intron | 35.0% |
| !! | AGCCTTTGAAATTGATCTGA+GGG | + | Chr4:51899227-51899246 | None:intergenic | 35.0% |
| !! | AGGTTATCAAGAGGTATTCA+AGG | - | Chr4:51900097-51900116 | MsG0480021001.01.T01:intron | 35.0% |
| !! | ATCAAGAGGTATTCAAGGTT+CGG | - | Chr4:51900102-51900121 | MsG0480021001.01.T01:intron | 35.0% |
| !! | TCAGAATCACTTTTGGATTG+CGG | - | Chr4:51900382-51900401 | MsG0480021001.01.T01:CDS | 35.0% |
| !!! | GTGATCACGGTTTTAAATGA+AGG | + | Chr4:51899459-51899478 | None:intergenic | 35.0% |
| AAATATGGAACCTAGTAGGG+AGG | - | Chr4:51900339-51900358 | MsG0480021001.01.T01:intron | 40.0% | |
| AAGACGATTCTTCTAGGCTT+GGG | - | Chr4:51900407-51900426 | MsG0480021001.01.T01:CDS | 40.0% | |
| AATTCCTCTGCTACACTTTC+TGG | + | Chr4:51899617-51899636 | None:intergenic | 40.0% | |
| AGGCAACTAATGGAAATCCA+TGG | - | Chr4:51899185-51899204 | MsG0480021001.01.T01:intron | 40.0% | |
| CAAATGCTCAAGCACAATCA+AGG | + | Chr4:51899582-51899601 | None:intergenic | 40.0% | |
| CAATGATTTCTCGCGAAGAA+TGG | + | Chr4:51900159-51900178 | None:intergenic | 40.0% | |
| CTCAAACAACTACGAAGATC+AGG | - | Chr4:51900207-51900226 | MsG0480021001.01.T01:CDS | 40.0% | |
| CTGATTACATCTACCGAATG+TGG | + | Chr4:51900186-51900205 | None:intergenic | 40.0% | |
| GATGTTATTGACCAGCTGAA+AGG | - | Chr4:51899650-51899669 | MsG0480021001.01.T01:intron | 40.0% | |
| GCTAGAGATGGAATACTACA+AGG | - | Chr4:51900502-51900521 | MsG0480021001.01.T01:five_prime_UTR | 40.0% | |
| GGAAGAAGGAAATCTTCTCA+AGG | - | Chr4:51900052-51900071 | MsG0480021001.01.T01:intron | 40.0% | |
| GGCAACTAATGGAAATCCAT+GGG | - | Chr4:51899186-51899205 | MsG0480021001.01.T01:intron | 40.0% | |
| GTGAAAAGGACCTGATAATC+TGG | + | Chr4:51899864-51899883 | None:intergenic | 40.0% | |
| TAGCATGTTCACCATTTCCA+AGG | - | Chr4:51899327-51899346 | MsG0480021001.01.T01:CDS | 40.0% | |
| TTACATCTACCGAATGTGGT+TGG | + | Chr4:51900182-51900201 | None:intergenic | 40.0% | |
| ! | AGGTCCTTTTCACCTAGTAA+AGG | - | Chr4:51899871-51899890 | MsG0480021001.01.T01:intron | 40.0% |
| ! | CCTTTTCACCTAGTAAAGGA+GGG | - | Chr4:51899875-51899894 | MsG0480021001.01.T01:intron | 40.0% |
| ! | GCGATCGCAATTTAAAACCT+TGG | + | Chr4:51899347-51899366 | None:intergenic | 40.0% |
| ! | TCCTTTTCACCTAGTAAAGG+AGG | - | Chr4:51899874-51899893 | MsG0480021001.01.T01:intron | 40.0% |
| ! | TGGAGAGTCAGAATCACTTT+TGG | - | Chr4:51900375-51900394 | MsG0480021001.01.T01:CDS | 40.0% |
| !! | CAGCCTTTGAAATTGATCTG+AGG | + | Chr4:51899228-51899247 | None:intergenic | 40.0% |
| !! | CTTGAGCATTTGTTGACTCA+TGG | - | Chr4:51899590-51899609 | MsG0480021001.01.T01:intron | 40.0% |
| !! | GAAGAATGGCTTTGTTTGGT+TGG | + | Chr4:51900145-51900164 | None:intergenic | 40.0% |
| !! | GGTTTTAACCCTCCTTTACT+AGG | + | Chr4:51899886-51899905 | None:intergenic | 40.0% |
| CCCTCCTTTACTAGGTGAAA+AGG | + | Chr4:51899878-51899897 | None:intergenic | 45.0% | |
| CGACCAAACTCCAGATTATC+AGG | - | Chr4:51899851-51899870 | MsG0480021001.01.T01:intron | 45.0% | |
| GAAGACGATTCTTCTAGGCT+TGG | - | Chr4:51900406-51900425 | MsG0480021001.01.T01:CDS | 45.0% | |
| GATCTGAGGGTTACAGTAGT+TGG | + | Chr4:51899214-51899233 | None:intergenic | 45.0% | |
| TAACAAGCTCACAGTTCTGC+AGG | + | Chr4:51899022-51899041 | None:intergenic | 45.0% | |
| TCCATCTCTAGCAGAAAGCA+AGG | + | Chr4:51900494-51900513 | None:intergenic | 45.0% | |
| TCCTTGCTTTCTGCTAGAGA+TGG | - | Chr4:51900490-51900509 | MsG0480021001.01.T01:five_prime_UTR | 45.0% | |
| ! | GGACCTGATAATCTGGAGTT+TGG | + | Chr4:51899857-51899876 | None:intergenic | 45.0% |
| !! | TCGCGAAGAATGGCTTTGTT+TGG | + | Chr4:51900149-51900168 | None:intergenic | 45.0% |
| !!! | AGGGGTGCTCATTTTGCTAT+TGG | + | Chr4:51898917-51898936 | None:intergenic | 45.0% |
| AAGTTCCACACCTCCCTACT+AGG | + | Chr4:51900352-51900371 | None:intergenic | 50.0% | |
| ACGATTCTTCTAGGCTTGGG+AGG | - | Chr4:51900410-51900429 | MsG0480021001.01.T01:CDS | 50.0% | |
| CTTGCAGCACCAGTATCAAC+TGG | + | Chr4:51899950-51899969 | None:intergenic | 50.0% | |
| GCGGAGAAGACGATTCTTCT+AGG | - | Chr4:51900401-51900420 | MsG0480021001.01.T01:CDS | 50.0% | |
| ! | GTTACAGTAGTTGGTGCCCA+TGG | + | Chr4:51899205-51899224 | None:intergenic | 50.0% |
| ! | TAGTAGGGAGGTGTGGAACT+TGG | - | Chr4:51900351-51900370 | MsG0480021001.01.T01:intron | 50.0% |
| ! | TGGACCAGAAAGTGTAGCAG+AGG | - | Chr4:51899610-51899629 | MsG0480021001.01.T01:intron | 50.0% |
| AAGGTCTGCGAGCGCAATCT+AGG | + | Chr4:51899440-51899459 | None:intergenic | 55.0% | |
| TGGAACCTAGTAGGGAGGTG+TGG | - | Chr4:51900344-51900363 | MsG0480021001.01.T01:intron | 55.0% | |
| ! | AGGGAGGTGTGGAACTTGGA+TGG | - | Chr4:51900355-51900374 | MsG0480021001.01.T01:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 51898872 | 51900531 | 51898872 | ID=MsG0480021001.01;Name=MsG0480021001.01 |
| Chr4 | mRNA | 51898872 | 51900531 | 51898872 | ID=MsG0480021001.01.T01;Parent=MsG0480021001.01;Name=MsG0480021001.01.T01;_AED=0.30;_eAED=0.30;_QI=69|0.75|0.6|1|1|1|5|0|262 |
| Chr4 | exon | 51898872 | 51899174 | 51898872 | ID=MsG0480021001.01.T01:exon:19904;Parent=MsG0480021001.01.T01 |
| Chr4 | exon | 51899294 | 51899405 | 51899294 | ID=MsG0480021001.01.T01:exon:19903;Parent=MsG0480021001.01.T01 |
| Chr4 | exon | 51899707 | 51899868 | 51899707 | ID=MsG0480021001.01.T01:exon:19902;Parent=MsG0480021001.01.T01 |
| Chr4 | exon | 51900107 | 51900229 | 51900107 | ID=MsG0480021001.01.T01:exon:19901;Parent=MsG0480021001.01.T01 |
| Chr4 | exon | 51900374 | 51900531 | 51900374 | ID=MsG0480021001.01.T01:exon:19900;Parent=MsG0480021001.01.T01 |
| Chr4 | five_prime_UTR | 51900463 | 51900531 | 51900463 | ID=MsG0480021001.01.T01:five_prime_utr;Parent=MsG0480021001.01.T01 |
| Chr4 | CDS | 51900374 | 51900462 | 51900374 | ID=MsG0480021001.01.T01:cds;Parent=MsG0480021001.01.T01 |
| Chr4 | CDS | 51900107 | 51900229 | 51900107 | ID=MsG0480021001.01.T01:cds;Parent=MsG0480021001.01.T01 |
| Chr4 | CDS | 51899707 | 51899868 | 51899707 | ID=MsG0480021001.01.T01:cds;Parent=MsG0480021001.01.T01 |
| Chr4 | CDS | 51899294 | 51899405 | 51899294 | ID=MsG0480021001.01.T01:cds;Parent=MsG0480021001.01.T01 |
| Chr4 | CDS | 51898872 | 51899174 | 51898872 | ID=MsG0480021001.01.T01:cds;Parent=MsG0480021001.01.T01 |
| Gene Sequence |
| Protein sequence |
