AlfalfaGEDB | MsG0280007531.01

M. sativa cultivar ZhongmuNo.1 / MsG0280007531.01

KEGG: -
GO: -
PFAM: PF05701

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007531.01.T01	XP_003594311.2	95.556	135	3	1	3	134	450	584	1.66E-79	255

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007531.01.T01	Q9FWW5	49.107	112	55	2	7	116	432	543	1.16E-20	89.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007531.01.T01	Q2HV31	95.556	135	3	1	3	134	450	584	7.92e-80	255

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048464.01	MsG0280007531.01	0.813433	2.566384e-51	1.675746e-48
MsG0180000091.01	MsG0280007531.01	0.823788	1.146850e-53	9.974024e-51
MsG0180000114.01	MsG0280007531.01	0.807777	4.281661e-50	2.405956e-47
MsG0180000782.01	MsG0280007531.01	0.806845	6.748225e-50	3.701342e-47
MsG0180000787.01	MsG0280007531.01	0.808767	2.634747e-50	1.519418e-47
MsG0180000914.01	MsG0280007531.01	0.809638	1.714175e-50	1.011870e-47
MsG0180001002.01	MsG0280007531.01	0.804360	2.243068e-49	1.154210e-46
MsG0180001311.01	MsG0280007531.01	0.801081	1.065545e-48	5.043220e-46
MsG0180002377.01	MsG0280007531.01	0.807263	5.505481e-50	3.052627e-47
MsG0180002547.01	MsG0280007531.01	0.807823	4.187846e-50	2.355991e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007531.01.T01	MTR_2g027130	95.556	135	3	1	3	134	450	584	2.01e-83	255
MsG0280007531.01.T01	MTR_4g133450	45.238	126	61	1	6	131	197	314	1.87e-30	111
MsG0280007531.01.T01	MTR_4g134110	46.032	126	60	1	6	131	433	550	2.91e-30	114
MsG0280007531.01.T01	MTR_3g060660	43.396	106	60	0	13	118	465	570	1.97e-19	83.6
MsG0280007531.01.T01	MTR_3g060660	43.396	106	60	0	13	118	454	559	3.13e-19	82.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007531.01.T01	AT1G12150	49.107	112	55	2	7	116	432	543	1.19e-21	89.7
MsG0280007531.01.T01	AT1G12150	49.107	112	55	2	7	116	432	543	1.19e-21	89.7
MsG0280007531.01.T01	AT4G17210	40.541	111	66	0	3	113	413	523	5.46e-19	82.0

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Find 16 sgRNAs with CRISPR-Local

Find 17 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAACTGCAATGGCTCAGG+TGG	0.549356	2:+16691958	MsG0280007531.01.T01:CDS
AAGTTGTTGTCTGACGCACA+AGG	0.705883	2:+16691827	MsG0280007531.01.T01:CDS
AATAAAAGCAGCAACAGATT+TGG	0.368777	2:+16692048	MsG0280007531.01.T01:CDS
AATGTGAAGATTTGATTGAG+AGG	0.600637	2:+16691930	MsG0280007531.01.T01:CDS
AGAAACAACTGCAATGGCTC+AGG	0.523434	2:+16691955	MsG0280007531.01.T01:CDS
CAGCAACAGATTTGGCTCTG+AGG	0.613910	2:+16692056	MsG0280007531.01.T01:CDS
CTTACCACTGGAATCAGAAA+CGG	0.572360	2:-16691858	None:intergenic
GAGGACAGAAACAACTGCAA+TGG	0.637220	2:+16691949	MsG0280007531.01.T01:CDS
GATGAATTTGCTGCTCTAAG+TGG	0.529272	2:+16691896	MsG0280007531.01.T01:CDS
GGCTCTGAGGAATGCAGAGA+TGG	0.535386	2:+16692069	MsG0280007531.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAAAAGCAGCAACAGATT+TGG	+	Chr2:16692048-16692067	MsG0280007531.01.T01:CDS	30.0%
AATGTGAAGATTTGATTGAG+AGG	+	Chr2:16691930-16691949	MsG0280007531.01.T01:CDS	30.0%
ACAAAAAGGTTTGGATTTGT+CGG	+	Chr2:16692147-16692166	MsG0280007531.01.T01:CDS	30.0%
TCAAGAAGAACAAAAAGGTT+TGG	+	Chr2:16692138-16692157	MsG0280007531.01.T01:CDS	30.0%
TTGAAGGTGAATTAAAGAAG+TGG	+	Chr2:16692113-16692132	MsG0280007531.01.T01:CDS	30.0%
CTTACCACTGGAATCAGAAA+CGG	-	Chr2:16691861-16691880	None:intergenic	40.0%
TCAGCAAAACTAGCAGTTGA+AGG	+	Chr2:16692097-16692116	MsG0280007531.01.T01:CDS	40.0%
TGGCGTCAAGAAGAACAAAA+AGG	+	Chr2:16692133-16692152	MsG0280007531.01.T01:CDS	40.0%
AAGTTGTTGTCTGACGCACA+AGG	+	Chr2:16691827-16691846	MsG0280007531.01.T01:CDS	45.0%
AGAAACAACTGCAATGGCTC+AGG	+	Chr2:16691955-16691974	MsG0280007531.01.T01:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	16691800	16692204	16691800	ID=MsG0280007531.01;Name=MsG0280007531.01
Chr2	mRNA	16691800	16692204	16691800	ID=MsG0280007531.01.T01;Parent=MsG0280007531.01;Name=MsG0280007531.01.T01;_AED=0.49;_eAED=0.49;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|134
Chr2	exon	16691800	16692204	16691800	ID=MsG0280007531.01.T01:exon:1311;Parent=MsG0280007531.01.T01
Chr2	CDS	16691800	16692204	16691800	ID=MsG0280007531.01.T01:cds;Parent=MsG0280007531.01.T01

Gene Sequence

>MsG0280007531.01.T01

ATGAAAAAAAGAGCTGTTGAGGAGATGAAGTTGTTGTCTGACGCACAAGGTAGTGTCTCCGTTTCTGATTCCAGTGGTAAGATCGTGTTGACAGTTGATGAATTTGCTGCTCTAAGTGGAAAAATCAATGAATGTGAAGATTTGATTGAGAGGACAGAAACAACTGCAATGGCTCAGGTGGAAGCAATCAACACAAGAAGAAATGAAGTGAACAAAAAAGTCGAAGCTAATCTTCAAGCAATCGAAGAAATAAAAGCAGCAACAGATTTGGCTCTGAGGAATGCAGAGATGGCAGACTCAGCAAAACTAGCAGTTGAAGGTGAATTAAAGAAGTGGCGTCAAGAAGAACAAAAAGGTTTGGATTTGTCGGATAACTCTTCAACACCAATCTCGCTGCAGAGCTAG

Protein sequence

>MsG0280007531.01.T01

MKKRAVEEMKLLSDAQGSVSVSDSSGKIVLTVDEFAALSGKINECEDLIERTETTAMAQVEAINTRRNEVNKKVEANLQAIEEIKAATDLALRNAEMADSAKLAVEGELKKWRQEEQKGLDLSDNSSTPISLQS*