AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000782.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000782.01.T01 MTR_0312s0030 85.870 92 13 0 140 231 216 307 3.46e-49 165
MsG0180000782.01.T01 MTR_0312s0030 81.633 98 15 2 45 141 4 99 6.14e-48 162
MsG0180000782.01.T01 MTR_1g007520 85.870 92 13 0 140 231 216 307 3.46e-49 165
MsG0180000782.01.T01 MTR_1g007520 81.633 98 15 2 45 141 4 99 6.14e-48 162
MsG0180000782.01.T01 MTR_1g008590 85.870 92 13 0 140 231 216 307 4.62e-49 165
MsG0180000782.01.T01 MTR_1g008590 89.773 88 6 2 55 141 14 99 5.11e-37 133
MsG0180000782.01.T01 MTR_1g008580 77.500 80 17 1 140 218 62 141 1.08e-39 136
MsG0180000782.01.T01 MTR_1g008500 71.739 92 23 2 140 230 275 364 2.33e-39 141
MsG0180000782.01.T01 MTR_1g008500 52.809 89 36 3 43 131 2 84 5.45e-16 77.4
MsG0180000782.01.T01 MTR_1g008510 78.750 80 16 1 140 218 216 295 8.80e-39 138
MsG0180000782.01.T01 MTR_1g008510 63.107 103 30 5 50 150 9 105 3.14e-27 107
MsG0180000782.01.T01 MTR_1g008560 78.750 80 16 1 140 218 220 299 9.01e-39 138
MsG0180000782.01.T01 MTR_1g008560 68.919 74 17 4 55 127 14 82 3.95e-23 96.7
MsG0180000782.01.T01 MTR_1g008530 67.742 93 29 1 140 231 114 206 9.50e-39 135
MsG0180000782.01.T01 MTR_1g008450 67.021 94 30 1 140 233 205 297 2.70e-37 134
MsG0180000782.01.T01 MTR_1g008470 58.696 92 37 1 140 231 192 282 1.16e-31 119
MsG0180000782.01.T01 MTR_1g008470 39.806 103 54 3 55 156 14 109 1.08e-12 67.0
MsG0180000782.01.T01 MTR_3g109490 58.889 90 35 1 144 231 215 304 7.89e-30 114
MsG0180000782.01.T01 MTR_3g109490 56.818 88 31 4 54 141 13 93 9.11e-19 84.7
MsG0180000782.01.T01 MTR_1g008460 56.522 92 39 1 140 231 189 279 7.58e-28 108
MsG0180000782.01.T01 MTR_2g081770 46.053 76 38 2 147 222 171 243 1.32e-15 75.1
MsG0180000782.01.T01 MTR_8g046000 43.836 73 38 2 148 220 126 195 1.44e-14 71.6
MsG0180000782.01.T01 MTR_2g081610 52.941 68 29 2 150 217 165 229 1.60e-14 72.0
MsG0180000782.01.T01 MTR_3g107830 42.391 92 49 3 136 224 141 231 6.96e-14 70.1
MsG0180000782.01.T01 MTR_3g116410 37.143 105 56 3 121 224 156 251 1.04e-13 69.7
MsG0180000782.01.T01 MTR_2g081590 46.575 73 36 2 150 222 165 234 1.17e-13 69.7
MsG0180000782.01.T01 MTR_8g445140 43.836 73 38 2 148 220 206 275 4.33e-13 68.2
MsG0180000782.01.T01 MTR_4g069680 36.667 90 55 2 128 216 166 254 1.54e-12 66.6
MsG0180000782.01.T01 MTR_8g044290 45.205 73 37 2 148 220 270 339 1.65e-12 67.4
MsG0180000782.01.T01 MTR_8g045890 41.096 73 40 2 148 220 413 482 2.93e-12 66.6
MsG0180000782.01.T01 MTR_8g045890 41.096 73 40 2 148 220 335 404 3.52e-12 66.2
MsG0180000782.01.T01 MTR_8g045890 41.096 73 40 2 148 220 376 445 3.62e-12 66.2
MsG0180000782.01.T01 MTR_8g445170 41.667 72 39 2 148 219 287 355 5.25e-12 65.9
MsG0180000782.01.T01 MTR_8g045880 42.857 63 34 1 158 220 227 287 2.93e-11 63.2
MsG0180000782.01.T01 MTR_4g069570 46.154 78 39 3 149 224 234 310 3.40e-11 63.2
MsG0180000782.01.T01 MTR_8g045880 42.857 63 34 1 158 220 262 322 3.58e-11 63.2
MsG0180000782.01.T01 MTR_8g045880 42.857 63 34 1 158 220 264 324 4.07e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000782.01.T01 AT5G25610 56.818 88 36 2 145 231 288 374 8.32e-25 102

Find 68 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCGTATCGTATCTCGTATC+TGG 0.252725 1:-11076847 MsG0180000782.01.T01:CDS
TCTTACCTCCTCAACTTTAC+TGG 0.262120 1:-11075403 MsG0180000782.01.T01:CDS
GCAGCATAATTATAAATAAA+TGG 0.303775 1:+11074631 None:intergenic
TGCCTGAGGATCATGTTGTT+TGG 0.331746 1:-11073966 MsG0180000782.01.T01:CDS
ACTTGAAATGCCAAATGTTT+GGG 0.345671 1:+11074030 None:intergenic
AGCAGATTAGTGATGGCTTT+TGG 0.347892 1:+11075353 None:intergenic
TAAAGCTTACTCTGTGCCTT+TGG 0.361974 1:-11074117 MsG0180000782.01.T01:CDS
TACTTGAAATGCCAAATGTT+TGG 0.379614 1:+11074029 None:intergenic
TGACAGTAAAACACTGCATA+AGG 0.401155 1:+11074155 None:intergenic
TATTCTTGGATGACACCAAT+AGG 0.404945 1:+11073919 None:intergenic
AGCTTACTCTGTGCCTTTGG+AGG 0.418522 1:-11074114 MsG0180000782.01.T01:CDS
GATATGTATCGGCAAGTATC+GGG 0.434461 1:+11077718 None:intergenic
TCAGGCAGGAGGTGACAAAC+TGG 0.434507 1:+11073982 None:intergenic
CAGCAATATACAATAGCATC+TGG 0.447095 1:-11074233 MsG0180000782.01.T01:CDS
GTGCCTTTGGAGGGTGCTGA+TGG 0.447611 1:-11074104 MsG0180000782.01.T01:CDS
TCAAATGTAGCTTGTGGTAG+TGG 0.457950 1:-11075441 MsG0180000782.01.T01:intron
TAGAAACAAACAAATCCTAT+TGG 0.458383 1:-11073934 MsG0180000782.01.T01:CDS
GGATATGTATCGGCAAGTAT+CGG 0.459180 1:+11077717 None:intergenic
CAGAATGGAACCCAAACATT+TGG 0.459725 1:-11074040 MsG0180000782.01.T01:CDS
GCTTACTCTGTGCCTTTGGA+GGG 0.480708 1:-11074113 MsG0180000782.01.T01:CDS
GGTATCGGTGCAGGATACGC+AGG 0.490444 1:+11077743 None:intergenic
CAAGTACTCAAAGTTCAACC+TGG 0.499411 1:-11074012 MsG0180000782.01.T01:CDS
GCATCTGGAGTGAAGAAGTT+GGG 0.513820 1:-11074218 MsG0180000782.01.T01:CDS
ATCTCGTATCTGGGCTTCAC+AGG 0.514234 1:-11076837 MsG0180000782.01.T01:intron
ATCCAAACAACATGATCCTC+AGG 0.517927 1:+11073964 None:intergenic
TGAGTGAAGAGAAAGGAACT+TGG 0.518251 1:-11074747 MsG0180000782.01.T01:CDS
GTCAGAAAGGGATACTATGA+AGG 0.523139 1:-11074691 MsG0180000782.01.T01:CDS
GACAGTAAAACACTGCATAA+GGG 0.527238 1:+11074156 None:intergenic
GGCAAGGGTGGTGTAGATGT+TGG 0.529745 1:-11074715 MsG0180000782.01.T01:CDS
AGCATCTGGAGTGAAGAAGT+TGG 0.536857 1:-11074219 MsG0180000782.01.T01:CDS
GATACTTGCCGATACATATC+CGG 0.537819 1:-11077715 MsG0180000782.01.T01:CDS
GGCAAGTATCGGGCAGGTAT+CGG 0.537917 1:+11077728 None:intergenic
TGTAGATGTTGGAGTCAGAA+AGG 0.539383 1:-11074704 MsG0180000782.01.T01:CDS
CATTGAAGAGGTGGGAAGCA+TGG 0.540494 1:+11075376 None:intergenic
TGACAAACTGGAACAGTCCC+AGG 0.541759 1:+11073994 None:intergenic
CCGTATCGTATCTCGTATCT+GGG 0.542124 1:-11076846 MsG0180000782.01.T01:CDS
TATCGGGCAGGTATCGGTGC+AGG 0.551317 1:+11077734 None:intergenic
AAAGGAACTTGGGTGGATGT+AGG 0.554611 1:-11074736 MsG0180000782.01.T01:CDS
AACTTGGGTGGATGTAGGCA+AGG 0.557293 1:-11074731 MsG0180000782.01.T01:CDS
TGGATATTGAGTGAAGAGAA+AGG 0.559648 1:-11074754 MsG0180000782.01.T01:CDS
AGTTTGTCACCTCCTGCCTG+AGG 0.562196 1:-11073980 MsG0180000782.01.T01:CDS
GTAGATGTTGGAGTCAGAAA+GGG 0.562316 1:-11074703 MsG0180000782.01.T01:CDS
GAGTGAAGAGAAAGGAACTT+GGG 0.566747 1:-11074746 MsG0180000782.01.T01:CDS
CTTCCATCAGCACCCTCCAA+AGG 0.576677 1:+11074101 None:intergenic
TGGGTGGATGTAGGCAAGGG+TGG 0.579389 1:-11074727 MsG0180000782.01.T01:CDS
TCTAGACTATGATACTAACC+AGG 0.583497 1:+11075326 None:intergenic
GGTGGCTCTGATGTGAATGT+TGG 0.588281 1:-11074667 MsG0180000782.01.T01:CDS
GATACTCTCCGGATATGTAT+CGG 0.589942 1:+11077707 None:intergenic
TGTATCGGCAAGTATCGGGC+AGG 0.597573 1:+11077722 None:intergenic
CCCAGATACGAGATACGATA+CGG 0.598956 1:+11076846 None:intergenic
AAGGGATACTATGAAGGAGG+TGG 0.599632 1:-11074685 MsG0180000782.01.T01:CDS
GACTTCCAGTAAAGTTGAGG+AGG 0.605659 1:+11075398 None:intergenic
GTCACACTGATACATCAGAA+TGG 0.606500 1:-11074055 MsG0180000782.01.T01:CDS
AAACAACATGATCCTCAGGC+AGG 0.608017 1:+11073968 None:intergenic
TCTGATGTGAATGTTGGAGT+TGG 0.609740 1:-11074661 MsG0180000782.01.T01:CDS
ATGGACTTCCAGTAAAGTTG+AGG 0.616898 1:+11075395 None:intergenic
AAGTACTCAAAGTTCAACCT+GGG 0.622856 1:-11074011 MsG0180000782.01.T01:CDS
AGGGTGTAGCAGATTAGTGA+TGG 0.623388 1:+11075346 None:intergenic
GTATCGGTGCAGGATACGCA+GGG 0.626983 1:+11077744 None:intergenic
TGAAGAGAAAGGAACTTGGG+TGG 0.629360 1:-11074743 MsG0180000782.01.T01:CDS
CAACATGATCCTCAGGCAGG+AGG 0.654087 1:+11073971 None:intergenic
ACTGCACCGATACATCGATA+CGG 0.654394 1:+11076876 None:intergenic
ACTTGGGTGGATGTAGGCAA+GGG 0.659855 1:-11074730 MsG0180000782.01.T01:CDS
ATCACTAATCTGCTACACCC+TGG 0.665412 1:-11075344 MsG0180000782.01.T01:CDS
AGAAAGGGATACTATGAAGG+AGG 0.679610 1:-11074688 MsG0180000782.01.T01:CDS
CTAGACTATGATACTAACCA+GGG 0.681471 1:+11075327 None:intergenic
GGTGCAGGATACGCAGGGGA+CGG 0.682118 1:+11077749 None:intergenic
TATCGGTGCAGGATACGCAG+GGG 0.752789 1:+11077745 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTAAAATTTAATATT+TGG + Chr1:11073975-11073994 None:intergenic 0.0%
!! GAAAATAAATACAAAAATTT+CGG + Chr1:11075189-11075208 None:intergenic 10.0%
!!! TATTTTATGAAATTTTGATT+TGG + Chr1:11074974-11074993 None:intergenic 10.0%
!!! TTTAAAGCATTTTATAAAAA+CGG + Chr1:11075448-11075467 None:intergenic 10.0%
!! GTTAATTATTTGAAGAAAAT+TGG + Chr1:11076154-11076173 None:intergenic 15.0%
!! TTAAATAAATAAAAAGTCTG+TGG - Chr1:11076815-11076834 MsG0180000782.01.T01:intron 15.0%
!!! ATACTCATTTTATATATAGA+TGG - Chr1:11076382-11076401 MsG0180000782.01.T01:intron 15.0%
!!! GTTTAAAATGATTTCATTTT+AGG - Chr1:11076421-11076440 MsG0180000782.01.T01:intron 15.0%
!!! TCTGTAACAAAATAATTTTT+AGG - Chr1:11075275-11075294 MsG0180000782.01.T01:intron 15.0%
!!! TGTGTTTTTTTATATGATTT+TGG - Chr1:11074046-11074065 MsG0180000782.01.T01:CDS 15.0%
!! AACAAGTTAAAAATCAAGAA+AGG - Chr1:11077228-11077247 MsG0180000782.01.T01:intron 20.0%
!! ACAAGTTAAAAATCAAGAAA+GGG - Chr1:11077229-11077248 MsG0180000782.01.T01:intron 20.0%
!! ATAAAATAAACCCAAGTAAT+TGG - Chr1:11076681-11076700 MsG0180000782.01.T01:intron 20.0%
!! ATACCATTCACTATATATAA+AGG - Chr1:11075952-11075971 MsG0180000782.01.T01:intron 20.0%
!! ATGGTATGTAACTATTAAAA+CGG + Chr1:11075939-11075958 None:intergenic 20.0%
!! CATTTCTCTTAAAAGAAAAA+CGG + Chr1:11075527-11075546 None:intergenic 20.0%
!! GCAGCATAATTATAAATAAA+TGG + Chr1:11077029-11077048 None:intergenic 20.0%
!! TAAAATAAACCCAAGTAATT+GGG - Chr1:11076682-11076701 MsG0180000782.01.T01:intron 20.0%
!!! ATGAAATCATTTTAAACACA+TGG + Chr1:11076418-11076437 None:intergenic 20.0%
!!! GACTATCTTTTTTTTTTCTT+TGG - Chr1:11076041-11076060 MsG0180000782.01.T01:intron 20.0%
!!! TTTGGATATAGTGTTTTTTT+TGG - Chr1:11074475-11074494 MsG0180000782.01.T01:intron 20.0%
! AAAAACTGTGTAACTATTCT+TGG + Chr1:11077755-11077774 None:intergenic 25.0%
! AACAAGATGAAAATCCATAT+TGG + Chr1:11076085-11076104 None:intergenic 25.0%
! AACGGTTCACTTTATATTTA+AGG + Chr1:11075509-11075528 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG - Chr1:11075652-11075671 MsG0180000782.01.T01:intron 25.0%
! AATATTGACGATTAAAAGAG+TGG + Chr1:11074609-11074628 None:intergenic 25.0%
! AATGCTACACTATATTCAAA+AGG + Chr1:11074528-11074547 None:intergenic 25.0%
! ACCATGAAAAAAGTAATGAT+GGG + Chr1:11076108-11076127 None:intergenic 25.0%
! GAGATGGAATGAAAAAAAAA+AGG + Chr1:11075987-11076006 None:intergenic 25.0%
! TAGAAACAAACAAATCCTAT+TGG - Chr1:11077723-11077742 MsG0180000782.01.T01:CDS 25.0%
! TATAATTTACTAGCGAAAGA+CGG + Chr1:11075063-11075082 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + Chr1:11075640-11075659 None:intergenic 25.0%
! TTTAATATTTGGATACTCTC+CGG + Chr1:11073964-11073983 None:intergenic 25.0%
!! AAAGATAGTCTTTACTCTTT+TGG + Chr1:11076031-11076050 None:intergenic 25.0%
!! CTTACCCTTTCTAAAAATTA+GGG - Chr1:11074165-11074184 MsG0180000782.01.T01:CDS 25.0%
!! TCTTACCCTTTCTAAAAATT+AGG - Chr1:11074164-11074183 MsG0180000782.01.T01:CDS 25.0%
!!! GAAACCCTAATTTTTAGAAA+GGG + Chr1:11074172-11074191 None:intergenic 25.0%
!!! TATTTTTTGTGTTAACTCTC+CGG + Chr1:11076795-11076814 None:intergenic 25.0%
!!! TGAAACCCTAATTTTTAGAA+AGG + Chr1:11074173-11074192 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG + Chr1:11075653-11075672 None:intergenic 25.0%
!!! TTTTGGTTAAATGTGTAGTT+TGG + Chr1:11075853-11075872 None:intergenic 25.0%
!!! TTTTTTTATTAACGTATCCC+AGG - Chr1:11074730-11074749 MsG0180000782.01.T01:CDS 25.0%
AAAAAGGACAATCAAGAATG+TGG - Chr1:11074278-11074297 MsG0180000782.01.T01:intron 30.0%
AAAAATCAAGAAAGGGTCAA+AGG - Chr1:11077236-11077255 MsG0180000782.01.T01:intron 30.0%
AAAACAATGGAGAGAGAAAA+AGG + Chr1:11075627-11075646 None:intergenic 30.0%
AAAATCAAGAAAGGGTCAAA+GGG - Chr1:11077237-11077256 MsG0180000782.01.T01:intron 30.0%
AAAGCTTGGAAAAAATGTTG+AGG - Chr1:11077367-11077386 MsG0180000782.01.T01:intron 30.0%
ACTTGAAATGCCAAATGTTT+GGG + Chr1:11077630-11077649 None:intergenic 30.0%
ATAATTTACTAGCGAAAGAC+GGG + Chr1:11075062-11075081 None:intergenic 30.0%
ATTAACAAACACAAGAAACC+AGG + Chr1:11074659-11074678 None:intergenic 30.0%
ATTCCACTTGTTTGATGAAA+AGG + Chr1:11077200-11077219 None:intergenic 30.0%
CACCATGAAAAAAGTAATGA+TGG + Chr1:11076109-11076128 None:intergenic 30.0%
CAGCCTTTATATATAGTGAA+TGG + Chr1:11075958-11075977 None:intergenic 30.0%
CTTTATCGTAATGAAAAGAG+CGG - Chr1:11075017-11075036 MsG0180000782.01.T01:intron 30.0%
GAAAGGACTTATGAATATGA+AGG - Chr1:11076647-11076666 MsG0180000782.01.T01:intron 30.0%
GATTAATTCATGCACATTGT+CGG - Chr1:11076443-11076462 MsG0180000782.01.T01:intron 30.0%
GGAGAAGATGGATATAAAAA+AGG - Chr1:11074262-11074281 MsG0180000782.01.T01:intron 30.0%
GGGAAGTTGAATTAATAAGT+TGG - Chr1:11075892-11075911 MsG0180000782.01.T01:intron 30.0%
GTGTAGTTTGGTTAAACATA+TGG + Chr1:11075841-11075860 None:intergenic 30.0%
TACTTGAAATGCCAAATGTT+TGG + Chr1:11077631-11077650 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG - Chr1:11075678-11075697 MsG0180000782.01.T01:intron 30.0%
TTCCACTTGTTTGATGAAAA+GGG + Chr1:11077199-11077218 None:intergenic 30.0%
TTGAATTATTCGTCATAGAG+AGG + Chr1:11076725-11076744 None:intergenic 30.0%
! AAAAGCTTTGTGTAACATCA+TGG - Chr1:11077319-11077338 MsG0180000782.01.T01:intron 30.0%
! CTGATTTGTATCTTGATGAT+GGG - Chr1:11074384-11074403 MsG0180000782.01.T01:intron 30.0%
! TCTTACTCTCTTCTTTTACT+CGG - Chr1:11075733-11075752 MsG0180000782.01.T01:intron 30.0%
! TTACTCTATTTATCTGAAGC+TGG - Chr1:11076883-11076902 MsG0180000782.01.T01:CDS 30.0%
!! AATTTTCCGTATCGATGTAT+CGG - Chr1:11074775-11074794 MsG0180000782.01.T01:intron 30.0%
!! TTCAACTTTTTCTTCCAAAG+TGG - Chr1:11074189-11074208 MsG0180000782.01.T01:CDS 30.0%
!!! ATTTTTTGTGTTAACTCTCC+GGG + Chr1:11076794-11076813 None:intergenic 30.0%
!!! TCCCATCATTACTTTTTTCA+TGG - Chr1:11076104-11076123 MsG0180000782.01.T01:intron 30.0%
!!! TGAGAGTTTATTTTTGCTGT+CGG + Chr1:11075797-11075816 None:intergenic 30.0%
AAATGTAGCACTCTTCTTTC+TGG - Chr1:11077076-11077095 MsG0180000782.01.T01:intron 35.0%
AAGTACTCAAAGTTCAACCT+GGG - Chr1:11077646-11077665 MsG0180000782.01.T01:intron 35.0%
ACCACTTAAACCCAATTACT+TGG + Chr1:11076695-11076714 None:intergenic 35.0%
ATAAACTCTCATGACACTCT+TGG - Chr1:11075806-11075825 MsG0180000782.01.T01:intron 35.0%
ATGCAATTGACTATGTGTTG+TGG + Chr1:11074145-11074164 None:intergenic 35.0%
CAGCAATATACAATAGCATC+TGG - Chr1:11077424-11077443 MsG0180000782.01.T01:intron 35.0%
CCACTTAAACCCAATTACTT+GGG + Chr1:11076694-11076713 None:intergenic 35.0%
CTAGACTATGATACTAACCA+GGG + Chr1:11076333-11076352 None:intergenic 35.0%
CTATTCTCAAATGTAGCTTG+TGG - Chr1:11076210-11076229 MsG0180000782.01.T01:intron 35.0%
CTTATTAATTCAACTTCCCC+TGG + Chr1:11075891-11075910 None:intergenic 35.0%
GACAGTAAAACACTGCATAA+GGG + Chr1:11077504-11077523 None:intergenic 35.0%
GATTTCACTACTTCAAAGCT+TGG - Chr1:11077353-11077372 MsG0180000782.01.T01:intron 35.0%
TAATGAAAAGAGCGGAAAGA+TGG - Chr1:11075025-11075044 MsG0180000782.01.T01:intron 35.0%
TACAAATCAGCTTCCAAATC+TGG + Chr1:11074374-11074393 None:intergenic 35.0%
TATTCTTGGATGACACCAAT+AGG + Chr1:11077741-11077760 None:intergenic 35.0%
TCAGATGATCTCTATCAGAA+AGG - Chr1:11076630-11076649 MsG0180000782.01.T01:intron 35.0%
TCAGCTTCACTTATCCAATA+TGG - Chr1:11076068-11076087 MsG0180000782.01.T01:intron 35.0%
TCTAGACTATGATACTAACC+AGG + Chr1:11076334-11076353 None:intergenic 35.0%
TGACAGTAAAACACTGCATA+AGG + Chr1:11077505-11077524 None:intergenic 35.0%
TGGATATTGAGTGAAGAGAA+AGG - Chr1:11076903-11076922 MsG0180000782.01.T01:CDS 35.0%
TGTCCAAAGTTGTCAAAAAG+TGG + Chr1:11075561-11075580 None:intergenic 35.0%
! CTTACTCTCTTCTTTTACTC+GGG - Chr1:11075734-11075753 MsG0180000782.01.T01:intron 35.0%
! TACCCTTTTCATCAAACAAG+TGG - Chr1:11077194-11077213 MsG0180000782.01.T01:intron 35.0%
! TTTTCTTGTCAAGGAGAAGA+TGG - Chr1:11074250-11074269 MsG0180000782.01.T01:CDS 35.0%
!! AGAAAGAAGAGTGCTACATT+TGG + Chr1:11077077-11077096 None:intergenic 35.0%
!! AGGGTATTGAATTAGCAACT+TGG + Chr1:11077180-11077199 None:intergenic 35.0%
!! CTCTTTTGGAAGAAATGATC+AGG + Chr1:11076017-11076036 None:intergenic 35.0%
!! GCTGATTTGTATCTTGATGA+TGG - Chr1:11074383-11074402 MsG0180000782.01.T01:intron 35.0%
!! TTGTATCTTGATGATGGGAA+TGG - Chr1:11074389-11074408 MsG0180000782.01.T01:intron 35.0%
!!! AGCACTGATGTGTTGTTTTT+TGG - Chr1:11074457-11074476 MsG0180000782.01.T01:intron 35.0%
!!! CAACCACTTTTTGACAACTT+TGG - Chr1:11075555-11075574 MsG0180000782.01.T01:intron 35.0%
!!! TTTTTTGTGTTAACTCTCCG+GGG + Chr1:11076793-11076812 None:intergenic 35.0%
AAAACTCACATAGTTGAGCC+AGG - Chr1:11075870-11075889 MsG0180000782.01.T01:intron 40.0%
AAACTCACATAGTTGAGCCA+GGG - Chr1:11075871-11075890 MsG0180000782.01.T01:intron 40.0%
AAATCAAGATACGATACGCC+TGG + Chr1:11074751-11074770 None:intergenic 40.0%
AATCAAGATACGATACGCCT+GGG + Chr1:11074750-11074769 None:intergenic 40.0%
AGAAAGGGATACTATGAAGG+AGG - Chr1:11076969-11076988 MsG0180000782.01.T01:intron 40.0%
ATCCAAACAACATGATCCTC+AGG + Chr1:11077696-11077715 None:intergenic 40.0%
ATGATCAGGAGAAGTTGAGA+TGG + Chr1:11076003-11076022 None:intergenic 40.0%
ATGGACTTCCAGTAAAGTTG+AGG + Chr1:11076265-11076284 None:intergenic 40.0%
ATTGAATTAGCAACTTGGCG+CGG + Chr1:11077175-11077194 None:intergenic 40.0%
ATTGACTATGTGTTGTGGTG+TGG + Chr1:11074140-11074159 None:intergenic 40.0%
CAAGTACTCAAAGTTCAACC+TGG - Chr1:11077645-11077664 MsG0180000782.01.T01:intron 40.0%
CAGAATGGAACCCAAACATT+TGG - Chr1:11077617-11077636 MsG0180000782.01.T01:intron 40.0%
CCCAAGTAATTGGGTTTAAG+TGG - Chr1:11076691-11076710 MsG0180000782.01.T01:intron 40.0%
CTCAATTCCACATCATCAAG+CGG + Chr1:11074327-11074346 None:intergenic 40.0%
GAGTGAAGAGAAAGGAACTT+GGG - Chr1:11076911-11076930 MsG0180000782.01.T01:intron 40.0%
GATACTCTCCGGATATGTAT+CGG + Chr1:11073953-11073972 None:intergenic 40.0%
GATACTTGCCGATACATATC+CGG - Chr1:11073942-11073961 MsG0180000782.01.T01:CDS 40.0%
GTAGATGTTGGAGTCAGAAA+GGG - Chr1:11076954-11076973 MsG0180000782.01.T01:intron 40.0%
GTCACACTGATACATCAGAA+TGG - Chr1:11077602-11077621 MsG0180000782.01.T01:intron 40.0%
GTCAGAAAGGGATACTATGA+AGG - Chr1:11076966-11076985 MsG0180000782.01.T01:intron 40.0%
GTCTTTGGATGAACCAGATT+TGG - Chr1:11074358-11074377 MsG0180000782.01.T01:intron 40.0%
GTGTAACATCATGGAGTCTA+TGG - Chr1:11077328-11077347 MsG0180000782.01.T01:intron 40.0%
TAAAGCTTACTCTGTGCCTT+TGG - Chr1:11077540-11077559 MsG0180000782.01.T01:intron 40.0%
TCTGATGTGAATGTTGGAGT+TGG - Chr1:11076996-11077015 MsG0180000782.01.T01:intron 40.0%
TCTTACCTCCTCAACTTTAC+TGG - Chr1:11076254-11076273 MsG0180000782.01.T01:intron 40.0%
TGAGTGAAGAGAAAGGAACT+TGG - Chr1:11076910-11076929 MsG0180000782.01.T01:intron 40.0%
TGAGTTAGCAGAGTTGTCTT+TGG - Chr1:11074343-11074362 MsG0180000782.01.T01:intron 40.0%
TGTAGATGTTGGAGTCAGAA+AGG - Chr1:11076953-11076972 MsG0180000782.01.T01:intron 40.0%
TTGACTATGTGTTGTGGTGT+GGG + Chr1:11074139-11074158 None:intergenic 40.0%
! AGCACTCTTCTTTCTGGAAA+AGG - Chr1:11077082-11077101 MsG0180000782.01.T01:intron 40.0%
! AGCAGATTAGTGATGGCTTT+TGG + Chr1:11076307-11076326 None:intergenic 40.0%
! GATATGTATCGGCAAGTATC+GGG + Chr1:11073942-11073961 None:intergenic 40.0%
! GCATTGAAGTATAGCACTGA+TGG - Chr1:11074543-11074562 MsG0180000782.01.T01:intron 40.0%
! GGATATGTATCGGCAAGTAT+CGG + Chr1:11073943-11073962 None:intergenic 40.0%
! GGCTCAACTATGTGAGTTTT+TGG + Chr1:11075870-11075889 None:intergenic 40.0%
! TCAAATGTAGCTTGTGGTAG+TGG - Chr1:11076216-11076235 MsG0180000782.01.T01:intron 40.0%
!! TATCTTGATGATGGGAATGG+AGG - Chr1:11074392-11074411 MsG0180000782.01.T01:intron 40.0%
AAACAACATGATCCTCAGGC+AGG + Chr1:11077692-11077711 None:intergenic 45.0%
AAAGGAACTTGGGTGGATGT+AGG - Chr1:11076921-11076940 MsG0180000782.01.T01:intron 45.0%
AACTCACATAGTTGAGCCAG+GGG - Chr1:11075872-11075891 MsG0180000782.01.T01:intron 45.0%
AAGGGATACTATGAAGGAGG+TGG - Chr1:11076972-11076991 MsG0180000782.01.T01:intron 45.0%
ACACAAGTATCCGTGCGTAT+CGG + Chr1:11074031-11074050 None:intergenic 45.0%
AGGGTGTAGCAGATTAGTGA+TGG + Chr1:11076314-11076333 None:intergenic 45.0%
ATCACTAATCTGCTACACCC+TGG - Chr1:11076313-11076332 MsG0180000782.01.T01:intron 45.0%
ATGTTAATGTGCTACGAGCC+TGG - Chr1:11074638-11074657 MsG0180000782.01.T01:CDS 45.0%
CCCAGATACGAGATACGATA+CGG + Chr1:11074814-11074833 None:intergenic 45.0%
CCGTATCGTATCTCGTATCT+GGG - Chr1:11074811-11074830 MsG0180000782.01.T01:intron 45.0%
CTGGAAAAGGACTTGCATCA+TGG - Chr1:11077095-11077114 MsG0180000782.01.T01:intron 45.0%
GACTTCCAGTAAAGTTGAGG+AGG + Chr1:11076262-11076281 None:intergenic 45.0%
TCAGTGAGTGTGAAGAGCAA+GGG - Chr1:11077283-11077302 MsG0180000782.01.T01:intron 45.0%
TCCGTATCGTATCTCGTATC+TGG - Chr1:11074810-11074829 MsG0180000782.01.T01:intron 45.0%
TGAAGAGAAAGGAACTTGGG+TGG - Chr1:11076914-11076933 MsG0180000782.01.T01:intron 45.0%
TGCCTGAGGATCATGTTGTT+TGG - Chr1:11077691-11077710 MsG0180000782.01.T01:intron 45.0%
TGTGAAGAGCAAGGGATCAA+AGG - Chr1:11077291-11077310 MsG0180000782.01.T01:intron 45.0%
TTGCTCTTCACACTCACTGA+CGG + Chr1:11077283-11077302 None:intergenic 45.0%
! ACTGCACCGATACATCGATA+CGG + Chr1:11074784-11074803 None:intergenic 45.0%
! AGCATCTGGAGTGAAGAAGT+TGG - Chr1:11077438-11077457 MsG0180000782.01.T01:intron 45.0%
! GCATCTGGAGTGAAGAAGTT+GGG - Chr1:11077439-11077458 MsG0180000782.01.T01:intron 45.0%
! TCGGACGTATCGGAAAGTAT+CGG + Chr1:11074012-11074031 None:intergenic 45.0%
!! GATGGCTTTTGGCATTGAAG+AGG + Chr1:11076296-11076315 None:intergenic 45.0%
!! GCTCGGTCATTTTCTTGTCA+AGG - Chr1:11074241-11074260 MsG0180000782.01.T01:CDS 45.0%
!! GCTTTTGGCATTGAAGAGGT+GGG + Chr1:11076292-11076311 None:intergenic 45.0%
!!! TAGCACTGATGGTGCTCTTT+TGG - Chr1:11074554-11074573 MsG0180000782.01.T01:intron 45.0%
!!! TAATTTTATTTCAATTTATT+TGG - Chr1:11074902-11074921 MsG0180000782.01.T01:intron 5.0%
AACTTGGGTGGATGTAGGCA+AGG - Chr1:11076926-11076945 MsG0180000782.01.T01:intron 50.0%
ACTTGGGTGGATGTAGGCAA+GGG - Chr1:11076927-11076946 MsG0180000782.01.T01:intron 50.0%
AGAGCAAGGGATCAAAGGAG+AGG - Chr1:11077296-11077315 MsG0180000782.01.T01:intron 50.0%
AGCTTACTCTGTGCCTTTGG+AGG - Chr1:11077543-11077562 MsG0180000782.01.T01:intron 50.0%
ATCTCGTATCTGGGCTTCAC+AGG - Chr1:11074820-11074839 MsG0180000782.01.T01:intron 50.0%
ATCTGGGCTTCACAGGTTGT+TGG - Chr1:11074827-11074846 MsG0180000782.01.T01:intron 50.0%
ATGACCGAGCAGTTCGACAA+TGG + Chr1:11074231-11074250 None:intergenic 50.0%
CAGTTCGACAATGGCCAAAG+TGG + Chr1:11074222-11074241 None:intergenic 50.0%
CATTGAAGAGGTGGGAAGCA+TGG + Chr1:11076284-11076303 None:intergenic 50.0%
GCTTACTCTGTGCCTTTGGA+GGG - Chr1:11077544-11077563 MsG0180000782.01.T01:intron 50.0%
GGAAGGGGGTCATAGTAATC+AGG + Chr1:11076763-11076782 None:intergenic 50.0%
GTCAGTGAGTGTGAAGAGCA+AGG - Chr1:11077282-11077301 MsG0180000782.01.T01:intron 50.0%
GTTAACTCTCCGGGGTCTAA+GGG + Chr1:11076785-11076804 None:intergenic 50.0%
TCGACAATGGCCAAAGTGGA+CGG + Chr1:11074218-11074237 None:intergenic 50.0%
TGACAAACTGGAACAGTCCC+AGG + Chr1:11077666-11077685 None:intergenic 50.0%
TGTTAACTCTCCGGGGTCTA+AGG + Chr1:11076786-11076805 None:intergenic 50.0%
TTAACTCTCCGGGGTCTAAG+GGG + Chr1:11076784-11076803 None:intergenic 50.0%
TTGGCCATTGTCGAACTGCT+CGG - Chr1:11074224-11074243 MsG0180000782.01.T01:CDS 50.0%
!! GCATGAACCGCTTGATGATG+TGG - Chr1:11074317-11074336 MsG0180000782.01.T01:intron 50.0%
!! GGCTTTTGGCATTGAAGAGG+TGG + Chr1:11076293-11076312 None:intergenic 50.0%
!! GGTGGCTCTGATGTGAATGT+TGG - Chr1:11076990-11077009 MsG0180000782.01.T01:intron 50.0%
!! TGATGATGGGAATGGAGGAG+AGG - Chr1:11074397-11074416 MsG0180000782.01.T01:intron 50.0%
AAAGTGGACGGCGACCACTT+TGG + Chr1:11074206-11074225 None:intergenic 55.0%
AAAGTGGTCGCCGTCCACTT+TGG - Chr1:11074205-11074224 MsG0180000782.01.T01:CDS 55.0%
AACTTGGCGCGGCAAGAATG+TGG + Chr1:11077164-11077183 None:intergenic 55.0%
AGTTTGTCACCTCCTGCCTG+AGG - Chr1:11077677-11077696 MsG0180000782.01.T01:intron 55.0%
CAACATGATCCTCAGGCAGG+AGG + Chr1:11077689-11077708 None:intergenic 55.0%
CTTCCATCAGCACCCTCCAA+AGG + Chr1:11077559-11077578 None:intergenic 55.0%
GGCAAGGGTGGTGTAGATGT+TGG - Chr1:11076942-11076961 MsG0180000782.01.T01:intron 55.0%
TATCGGTGCAGGATACGCAG+GGG + Chr1:11073915-11073934 None:intergenic 55.0%
TCAGGCAGGAGGTGACAAAC+TGG + Chr1:11077678-11077697 None:intergenic 55.0%
TCCGATACGTCCGATACGCA+CGG - Chr1:11074018-11074037 MsG0180000782.01.T01:CDS 55.0%
TCCGTGCGTATCGGACGTAT+CGG + Chr1:11074022-11074041 None:intergenic 55.0%
! GTATCGGTGCAGGATACGCA+GGG + Chr1:11073916-11073935 None:intergenic 55.0%
!! GGCAAGTATCGGGCAGGTAT+CGG + Chr1:11073932-11073951 None:intergenic 55.0%
!! TGTATCGGCAAGTATCGGGC+AGG + Chr1:11073938-11073957 None:intergenic 55.0%
TCTCCGGGGTCTAAGGGGAA+GGG + Chr1:11076779-11076798 None:intergenic 60.0%
TGGGTGGATGTAGGCAAGGG+TGG - Chr1:11076930-11076949 MsG0180000782.01.T01:intron 60.0%
!! GGTATCGGTGCAGGATACGC+AGG + Chr1:11073917-11073936 None:intergenic 60.0%
!! GTGCCTTTGGAGGGTGCTGA+TGG - Chr1:11077553-11077572 MsG0180000782.01.T01:intron 60.0%
!! TATCGGGCAGGTATCGGTGC+AGG + Chr1:11073926-11073945 None:intergenic 60.0%
ACCCCCTTCCCCTTAGACCC+CGG - Chr1:11076773-11076792 MsG0180000782.01.T01:intron 65.0%
CTCCGGGGTCTAAGGGGAAG+GGG + Chr1:11076778-11076797 None:intergenic 65.0%
CTCTCCGGGGTCTAAGGGGA+AGG + Chr1:11076780-11076799 None:intergenic 65.0%
GGTGCAGGATACGCAGGGGA+CGG + Chr1:11073911-11073930 None:intergenic 65.0%
TCCGGGGTCTAAGGGGAAGG+GGG + Chr1:11076777-11076796 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 11073896 11077783 11073896 ID=MsG0180000782.01;Name=MsG0180000782.01
Chr1 mRNA 11073896 11077783 11073896 ID=MsG0180000782.01.T01;Parent=MsG0180000782.01;Name=MsG0180000782.01.T01;_AED=0.49;_eAED=0.60;_QI=0|0|0|1|1|1|5|0|268
Chr1 exon 11077712 11077783 11077712 ID=MsG0180000782.01.T01:exon:937;Parent=MsG0180000782.01.T01
Chr1 exon 11076838 11076927 11076838 ID=MsG0180000782.01.T01:exon:938;Parent=MsG0180000782.01.T01
Chr1 exon 11075341 11075453 11075341 ID=MsG0180000782.01.T01:exon:939;Parent=MsG0180000782.01.T01
Chr1 exon 11074629 11074777 11074629 ID=MsG0180000782.01.T01:exon:940;Parent=MsG0180000782.01.T01
Chr1 exon 11073896 11074278 11073896 ID=MsG0180000782.01.T01:exon:941;Parent=MsG0180000782.01.T01
Chr1 CDS 11077712 11077783 11077712 ID=MsG0180000782.01.T01:cds;Parent=MsG0180000782.01.T01
Chr1 CDS 11076838 11076927 11076838 ID=MsG0180000782.01.T01:cds;Parent=MsG0180000782.01.T01
Chr1 CDS 11075341 11075453 11075341 ID=MsG0180000782.01.T01:cds;Parent=MsG0180000782.01.T01
Chr1 CDS 11074629 11074777 11074629 ID=MsG0180000782.01.T01:cds;Parent=MsG0180000782.01.T01
Chr1 CDS 11073896 11074278 11073896 ID=MsG0180000782.01.T01:cds;Parent=MsG0180000782.01.T01
Gene Sequence

>MsG0180000782.01.T01

ATGGATGACGTACCGTCCCCTGCGTATCCTGCACCGATACCTGCCCGATACTTGCCGATACATATCCGGAGAGCGTATCGTATCTTGATTTTTGAAATTTTCCGTATCGATGTATCGGTGCAGTATCGTATCCGTATCGTATCTCGTATCTGGGCTTCACAGCTTGTGGTAGTGGCAACTAATGCTGCAATCTTACCTCCTCAACTTTACTGGAAGTCCATGCTTCCCACCTCTTCAATGCCAAAAGCCATCACTAATCTGCTACACCCTGGTTACTGGATATTGAGTGAAGAGAAAGGAACTTGGGTGGATGTAGGCAAGGGTGGTGTAGATGTTGGAGTCAGAAAGGGATACTATGAAGGAGGTGGCTCTGATGTGAATGTTGGAGTTGGACGTTCTCCATTTATTTATAATTATGCTGCAAAAGTGAACAAAGAAAGTAATTTACAGCAATATACAATAGCATCTGGAGTGAAGAAGTTGGGTGAGAAGAACAAAGCTGTTGTGTGTCACAAAGAGAATTACCCTTATGCAGTGTTTTACTGTCACAAAACAGATACAACTAAAGCTTACTCTGTGCCTTTGGAGGGTGCTGATGGAAGCAGAGTTAAAGCTATTGCTGTGTGTCACACTGATACATCAGAATGGAACCCAAACATTTGGCATTTCAAGTACTCAAAGTTCAACCTGGGACTGTTCCAGTTTGTCACCTCCTGCCTGAGGATCATGTTGTTTGGATTCGCAAGTAGAAACAAACAAATCCTATTGGTGTCATCCAAGAATAGTTACACAGTTTTTATAGTATAA

Protein sequence

>MsG0180000782.01.T01

MDDVPSPAYPAPIPARYLPIHIRRAYRILIFEIFRIDVSVQYRIRIVSRIWASQLVVVATNAAILPPQLYWKSMLPTSSMPKAITNLLHPGYWILSEEKGTWVDVGKGGVDVGVRKGYYEGGGSDVNVGVGRSPFIYNYAAKVNKESNLQQYTIASGVKKLGEKNKAVVCHKENYPYAVFYCHKTDTTKAYSVPLEGADGSRVKAIAVCHTDTSEWNPNIWHFKYSKFNLGLFQFVTSCLRIMLFGFASRNKQILLVSSKNSYTVFIV*