AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002547.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002547.01.T01 MTR_1g048960 100.000 96 0 0 1 96 1 96 1.05e-66 195
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002547.01.T01 AT1G72020 69.072 97 29 1 1 96 1 97 2.53e-45 141

Find 43 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATCATATTGTATTAATA+TGG 0.223492 1:-40197113 None:intergenic
AACAATAATCAGATGGATTT+GGG 0.242746 1:+40196829 MsG0180002547.01.T01:three_prime_UTR
CTAGACTAGCATATTGGTTT+TGG 0.253646 1:+40196856 MsG0180002547.01.T01:three_prime_UTR
TAACAATAATCAGATGGATT+TGG 0.267194 1:+40196828 MsG0180002547.01.T01:three_prime_UTR
GTGAGGGATTTGACCTGATT+TGG 0.301994 1:-40194841 None:intergenic
AATGTCCAAGCACAAATATT+TGG 0.313332 1:-40196972 None:intergenic
CTTGGACAAGATGAAGTATC+AGG 0.339393 1:+40196684 MsG0180002547.01.T01:CDS
TTGATGAAGTTGGTTATTGC+AGG 0.379507 1:+40197061 MsG0180002547.01.T01:three_prime_UTR
TTGACCTGATTTGGAGATAG+AGG 0.379867 1:-40194832 None:intergenic
TGATTATTACAAGAGATATA+TGG 0.396470 1:-40196935 None:intergenic
CATCTGATTATTGTTACAAA+TGG 0.398465 1:-40196821 None:intergenic
GGGATCCTAGACTAGCATAT+TGG 0.403278 1:+40196850 MsG0180002547.01.T01:three_prime_UTR
CTTCAGTGGTTTGATGAAGT+TGG 0.416950 1:+40197051 MsG0180002547.01.T01:three_prime_UTR
AGTAGAGGATTTCATTCAAC+TGG 0.419375 1:+40196592 MsG0180002547.01.T01:CDS
CAGCAAAAGAAGACAGCATC+TGG 0.440272 1:+40196781 MsG0180002547.01.T01:CDS
GAATCCTCTATCTCCAAATC+AGG 0.460949 1:+40194828 MsG0180002547.01.T01:CDS
TTGTTAAGCTTGGCGAAACT+AGG 0.466604 1:+40194692 MsG0180002547.01.T01:five_prime_UTR
GTGTTCACAGCTTTCAGCAT+TGG 0.501579 1:+40196727 MsG0180002547.01.T01:CDS
GAAACACAAATTTCATTCGA+AGG 0.507077 1:+40194729 MsG0180002547.01.T01:five_prime_UTR
TTCAACTGGCGTGAAGAGGA+TGG 0.515922 1:+40196606 MsG0180002547.01.T01:CDS
CAAAACCAATATGCTAGTCT+AGG 0.520108 1:-40196855 None:intergenic
TGCATATCACATGTACAACT+TGG 0.529028 1:+40196666 MsG0180002547.01.T01:CDS
TAATGCCAAATATTTGTGCT+TGG 0.529346 1:+40196967 MsG0180002547.01.T01:three_prime_UTR
TGTTAAGCTTGGCGAAACTA+GGG 0.529654 1:+40194693 MsG0180002547.01.T01:five_prime_UTR
TTCAGGTGGTGGTTCTTCAG+TGG 0.534192 1:+40197037 MsG0180002547.01.T01:three_prime_UTR
ATATGGAAAGAAACAAATGA+GGG 0.537796 1:-40197096 None:intergenic
AAGAGGATGGGAGGTGGACA+TGG 0.543948 1:+40196619 MsG0180002547.01.T01:CDS
AATATGGAAAGAAACAAATG+AGG 0.550114 1:-40197097 None:intergenic
GGCGTGAAGAGGATGGGAGG+TGG 0.551979 1:+40196613 MsG0180002547.01.T01:CDS
CTTGAAAGGAAATATAGACT+TGG 0.553076 1:+40197002 MsG0180002547.01.T01:three_prime_UTR
TTCATTCAACTGGCGTGAAG+AGG 0.553273 1:+40196602 MsG0180002547.01.T01:CDS
CATTTGTAACAATAATCAGA+TGG 0.565224 1:+40196822 MsG0180002547.01.T01:three_prime_UTR
TCAACTGGCGTGAAGAGGAT+GGG 0.574066 1:+40196607 MsG0180002547.01.T01:CDS
GCATATACTCTGGTTCGCTA+TGG 0.578575 1:-40196642 None:intergenic
TGGAAAATGACTGCATACAC+AGG 0.585917 1:-40196760 None:intergenic
TTGGACAAGATGAAGTATCA+GGG 0.612137 1:+40196685 MsG0180002547.01.T01:CDS
ATAACGATGGCATTGAACAA+CGG 0.641834 1:+40194771 MsG0180002547.01.T01:exon
TATGTTGTGACAGTGAGTAG+AGG 0.664220 1:+40196577 MsG0180002547.01.T01:intron
TGATATGCATGCATATACTC+TGG 0.665333 1:-40196652 None:intergenic
ACAATAATCAGATGGATTTG+GGG 0.667145 1:+40196830 MsG0180002547.01.T01:three_prime_UTR
ACTGGCGTGAAGAGGATGGG+AGG 0.681452 1:+40196610 MsG0180002547.01.T01:CDS
TATGGAAAGAAACAAATGAG+GGG 0.695575 1:-40197095 None:intergenic
AATCGAATTTGCGATAACGA+TGG 0.704958 1:+40194758 MsG0180002547.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTTGATTTATTAATAAA+TGG + Chr1:40194971-40194990 MsG0180002547.01.T01:intron 10.0%
!! TTGATTTATTAATAAATGGA+GGG + Chr1:40194975-40194994 MsG0180002547.01.T01:intron 15.0%
!!! AGTTTTATATATGTATTACA+TGG + Chr1:40195656-40195675 MsG0180002547.01.T01:intron 15.0%
!!! GTTTTATATATGTATTACAT+GGG + Chr1:40195657-40195676 MsG0180002547.01.T01:intron 15.0%
!!! TTACATTAGGTTTTTTATTT+GGG + Chr1:40194934-40194953 MsG0180002547.01.T01:intron 15.0%
!!! TTTGATTTATTAATAAATGG+AGG + Chr1:40194974-40194993 MsG0180002547.01.T01:intron 15.0%
!!! TTTGTTTTTACTTTCAATTT+CGG + Chr1:40194911-40194930 MsG0180002547.01.T01:intron 15.0%
!! AATTAACGGTTTAGATTAAA+TGG + Chr1:40195746-40195765 MsG0180002547.01.T01:intron 20.0%
!! GAATATTATTAATGATACTC+TGG - Chr1:40195626-40195645 None:intergenic 20.0%
!! GGAATCATATTGTATTAATA+TGG - Chr1:40197116-40197135 None:intergenic 20.0%
!! TGATTATTACAAGAGATATA+TGG - Chr1:40196938-40196957 None:intergenic 20.0%
!! TTATTTGACTAATGAACATA+TGG + Chr1:40195568-40195587 MsG0180002547.01.T01:intron 20.0%
!!! AGAATGACTTTTTTTTTATG+TGG - Chr1:40196481-40196500 None:intergenic 20.0%
!!! GTTACATTAGGTTTTTTATT+TGG + Chr1:40194933-40194952 MsG0180002547.01.T01:intron 20.0%
!!! GTTCATGTTTAATTTTCATA+TGG + Chr1:40196907-40196926 MsG0180002547.01.T01:three_prime_UTR 20.0%
!!! TAAAACAATTTTGTTGTCTA+AGG + Chr1:40195158-40195177 MsG0180002547.01.T01:intron 20.0%
!!! TACATTAGGTTTTTTATTTG+GGG + Chr1:40194935-40194954 MsG0180002547.01.T01:intron 20.0%
! AAATCTTCCTCAAAAGTAAT+CGG - Chr1:40194886-40194905 None:intergenic 25.0%
! AAATTAACATGGATCTTAGA+GGG + Chr1:40195307-40195326 MsG0180002547.01.T01:intron 25.0%
! AAGACCTAAGATAAATTTGA+AGG - Chr1:40195464-40195483 None:intergenic 25.0%
! AATATGGAAAGAAACAAATG+AGG - Chr1:40197100-40197119 None:intergenic 25.0%
! ATATGGAAAGAAACAAATGA+GGG - Chr1:40197099-40197118 None:intergenic 25.0%
! CATCTGATTATTGTTACAAA+TGG - Chr1:40196824-40196843 None:intergenic 25.0%
! CATTTGTAACAATAATCAGA+TGG + Chr1:40196822-40196841 MsG0180002547.01.T01:three_prime_UTR 25.0%
! GTCATTGGATTAACAATTAA+CGG + Chr1:40195732-40195751 MsG0180002547.01.T01:intron 25.0%
! GTTAAATACAGTTCTTGATT+GGG + Chr1:40196362-40196381 MsG0180002547.01.T01:intron 25.0%
! TGTTAAATACAGTTCTTGAT+TGG + Chr1:40196361-40196380 MsG0180002547.01.T01:intron 25.0%
!! AACAATAATCAGATGGATTT+GGG + Chr1:40196829-40196848 MsG0180002547.01.T01:three_prime_UTR 25.0%
!! ATCAATATTTTCAATGCATC+GGG - Chr1:40195106-40195125 None:intergenic 25.0%
!! CATCAATATTTTCAATGCAT+CGG - Chr1:40195107-40195126 None:intergenic 25.0%
!! TAACAATAATCAGATGGATT+TGG + Chr1:40196828-40196847 MsG0180002547.01.T01:three_prime_UTR 25.0%
!!! ACATTAGGTTTTTTATTTGG+GGG + Chr1:40194936-40194955 MsG0180002547.01.T01:intron 25.0%
!!! ATTTTGTACATTTTGATCCA+AGG - Chr1:40195899-40195918 None:intergenic 25.0%
!!! GTTTTGATTCCAAATTAACA+TGG + Chr1:40195296-40195315 MsG0180002547.01.T01:intron 25.0%
!!! TGATGTTTTAAATTGCGATT+AGG + Chr1:40195011-40195030 MsG0180002547.01.T01:intron 25.0%
!!! TTGTGGTTTTGTTTATATTG+TGG + Chr1:40195034-40195053 MsG0180002547.01.T01:intron 25.0%
AAAGAATTCCTGTTAGTCAT+TGG + Chr1:40195717-40195736 MsG0180002547.01.T01:intron 30.0%
AATGTCCAAGCACAAATATT+TGG - Chr1:40196975-40196994 None:intergenic 30.0%
ACTTAAGCACGAATATTCAA+TGG + Chr1:40196041-40196060 MsG0180002547.01.T01:intron 30.0%
ATACAAAATATTGGCGTATG+GGG + Chr1:40196386-40196405 MsG0180002547.01.T01:intron 30.0%
CAAATTAACATGGATCTTAG+AGG + Chr1:40195306-40195325 MsG0180002547.01.T01:intron 30.0%
CATACAAAATATTGGCGTAT+GGG + Chr1:40196385-40196404 MsG0180002547.01.T01:intron 30.0%
CCTAAGATAAATTTGAAGGT+CGG - Chr1:40195460-40195479 None:intergenic 30.0%
CTTAAGCACGAATATTCAAT+GGG + Chr1:40196042-40196061 MsG0180002547.01.T01:intron 30.0%
CTTGAAAGGAAATATAGACT+TGG + Chr1:40197002-40197021 MsG0180002547.01.T01:three_prime_UTR 30.0%
CTTTCAATTTCGGTTACATT+AGG + Chr1:40194921-40194940 MsG0180002547.01.T01:intron 30.0%
GAAACACAAATTTCATTCGA+AGG + Chr1:40194729-40194748 MsG0180002547.01.T01:five_prime_UTR 30.0%
TAATGCCAAATATTTGTGCT+TGG + Chr1:40196967-40196986 MsG0180002547.01.T01:three_prime_UTR 30.0%
TATGGAAAGAAACAAATGAG+GGG - Chr1:40197098-40197117 None:intergenic 30.0%
TGATTGGGCATACAAAATAT+TGG + Chr1:40196377-40196396 MsG0180002547.01.T01:intron 30.0%
TTGTTAATCCAATGACTAAC+AGG - Chr1:40195728-40195747 None:intergenic 30.0%
TTTCCTAGACATCTTAAAAC+AGG - Chr1:40196516-40196535 None:intergenic 30.0%
! AAAACATTCTTTGTTGGTTG+TGG + Chr1:40196263-40196282 MsG0180002547.01.T01:intron 30.0%
! AAACATTCTTTGTTGGTTGT+GGG + Chr1:40196264-40196283 MsG0180002547.01.T01:intron 30.0%
! ACAATAATCAGATGGATTTG+GGG + Chr1:40196830-40196849 MsG0180002547.01.T01:three_prime_UTR 30.0%
! CAGATACATTTTGTTAAGCT+TGG + Chr1:40194682-40194701 MsG0180002547.01.T01:five_prime_UTR 30.0%
! GAAGATAAAAGTGTAATGTG+AGG - Chr1:40195784-40195803 None:intergenic 30.0%
! GGACATTTTTATGTCTTGAA+AGG + Chr1:40196988-40197007 MsG0180002547.01.T01:three_prime_UTR 30.0%
! TTTAAATTGCGATTAGGTTG+TGG + Chr1:40195017-40195036 MsG0180002547.01.T01:intron 30.0%
! TTTTTATGTGGAAACGAAAG+AGG - Chr1:40196469-40196488 None:intergenic 30.0%
!! CTCTAAGATCCATGTTAATT+TGG - Chr1:40195308-40195327 None:intergenic 30.0%
!! TTGAAAAGTATCAGTATGCA+AGG - Chr1:40195869-40195888 None:intergenic 30.0%
AAAGAGTCGAAAGAACATGA+AGG + Chr1:40195358-40195377 MsG0180002547.01.T01:intron 35.0%
AAAGCTAACAATATCGCCAT+TGG + Chr1:40196291-40196310 MsG0180002547.01.T01:intron 35.0%
AAGAACATGAAGGGGAAAAA+AGG + Chr1:40195368-40195387 MsG0180002547.01.T01:intron 35.0%
AAGAGGTTCTTGTTAGTCAT+CGG - Chr1:40196452-40196471 None:intergenic 35.0%
AAGAGTCGAAAGAACATGAA+GGG + Chr1:40195359-40195378 MsG0180002547.01.T01:intron 35.0%
AATCGAATTTGCGATAACGA+TGG + Chr1:40194758-40194777 MsG0180002547.01.T01:exon 35.0%
AGCAGACTAATGTATGAGAA+GGG + Chr1:40195202-40195221 MsG0180002547.01.T01:intron 35.0%
AGTAGAGGATTTCATTCAAC+TGG + Chr1:40196592-40196611 MsG0180002547.01.T01:CDS 35.0%
AGTCATCGGATTAAAGTAGA+TGG - Chr1:40196438-40196457 None:intergenic 35.0%
ATGCAAAACATCCAAGGATA+GGG - Chr1:40195955-40195974 None:intergenic 35.0%
CAACTGAACTAAGAAACAGT+AGG - Chr1:40195492-40195511 None:intergenic 35.0%
CATTAAATGCAGCGAAAACA+TGG - Chr1:40195519-40195538 None:intergenic 35.0%
CCGACCTTCAAATTTATCTT+AGG + Chr1:40195457-40195476 MsG0180002547.01.T01:intron 35.0%
CGGATTGAACATGAAAGAAA+AGG - Chr1:40194866-40194885 None:intergenic 35.0%
GAACATGAAAGAAAAGGTGA+GGG - Chr1:40194860-40194879 None:intergenic 35.0%
GCATACAAAATATTGGCGTA+TGG + Chr1:40196384-40196403 MsG0180002547.01.T01:intron 35.0%
TAGCAGACTAATGTATGAGA+AGG + Chr1:40195201-40195220 MsG0180002547.01.T01:intron 35.0%
TCAGAATTTAACTCCTGGAA+GGG + Chr1:40196066-40196085 MsG0180002547.01.T01:intron 35.0%
TGAACATGAAAGAAAAGGTG+AGG - Chr1:40194861-40194880 None:intergenic 35.0%
TGATATGCATGCATATACTC+TGG - Chr1:40196655-40196674 None:intergenic 35.0%
TGATTCATGCAAAACATCCA+AGG - Chr1:40195961-40195980 None:intergenic 35.0%
TGCATATCACATGTACAACT+TGG + Chr1:40196666-40196685 MsG0180002547.01.T01:CDS 35.0%
TTCAGAATTTAACTCCTGGA+AGG + Chr1:40196065-40196084 MsG0180002547.01.T01:intron 35.0%
TTTATAGCCTCAAAAGCAGT+TGG - Chr1:40196206-40196225 None:intergenic 35.0%
! AAAGTATCAGTATGCAAGGA+TGG - Chr1:40195865-40195884 None:intergenic 35.0%
! ATAACGATGGCATTGAACAA+CGG + Chr1:40194771-40194790 MsG0180002547.01.T01:exon 35.0%
! ATCTTAGAGGGCTTTTGTTA+TGG + Chr1:40195319-40195338 MsG0180002547.01.T01:intron 35.0%
! CAAAACCAATATGCTAGTCT+AGG - Chr1:40196858-40196877 None:intergenic 35.0%
! TTGATGAAGTTGGTTATTGC+AGG + Chr1:40197061-40197080 MsG0180002547.01.T01:three_prime_UTR 35.0%
! TTGGACAAGATGAAGTATCA+GGG + Chr1:40196685-40196704 MsG0180002547.01.T01:CDS 35.0%
!! GTACATTTTGATCCAAGGTT+GGG - Chr1:40195894-40195913 None:intergenic 35.0%
!! GTTCAATCCGATTACTTTTG+AGG + Chr1:40194876-40194895 MsG0180002547.01.T01:intron 35.0%
!! TGTACATTTTGATCCAAGGT+TGG - Chr1:40195895-40195914 None:intergenic 35.0%
!!! ATGGGTATTTTGATCCAAGA+TGG - Chr1:40195838-40195857 None:intergenic 35.0%
!!! CTAGACTAGCATATTGGTTT+TGG + Chr1:40196856-40196875 MsG0180002547.01.T01:three_prime_UTR 35.0%
!!! TCTCCTGTTTTAAGATGTCT+AGG + Chr1:40196510-40196529 MsG0180002547.01.T01:intron 35.0%
AACATACAGAACCCTATCCT+TGG + Chr1:40195941-40195960 MsG0180002547.01.T01:intron 40.0%
AAGATGGCAATGACAACAAG+AGG - Chr1:40195822-40195841 None:intergenic 40.0%
AGAGTCGAAAGAACATGAAG+GGG + Chr1:40195360-40195379 MsG0180002547.01.T01:intron 40.0%
AGTATGCAAGGATGGTGATA+TGG - Chr1:40195857-40195876 None:intergenic 40.0%
CATGCAAAACATCCAAGGAT+AGG - Chr1:40195956-40195975 None:intergenic 40.0%
CTTCAGTGGTTTGATGAAGT+TGG + Chr1:40197051-40197070 MsG0180002547.01.T01:three_prime_UTR 40.0%
GAATCCTCTATCTCCAAATC+AGG + Chr1:40194828-40194847 MsG0180002547.01.T01:CDS 40.0%
GGCTGGAAAACATTCTTTGT+TGG + Chr1:40196257-40196276 MsG0180002547.01.T01:intron 40.0%
GTATGCAAGGATGGTGATAT+GGG - Chr1:40195856-40195875 None:intergenic 40.0%
GTTAGTGGCATAGTTGTATG+TGG + Chr1:40196142-40196161 MsG0180002547.01.T01:intron 40.0%
TAGGGTTCTGTATGTTTGTG+AGG - Chr1:40195937-40195956 None:intergenic 40.0%
TATGTTGTGACAGTGAGTAG+AGG + Chr1:40196577-40196596 MsG0180002547.01.T01:intron 40.0%
TGGAAAATGACTGCATACAC+AGG - Chr1:40196763-40196782 None:intergenic 40.0%
TGGGTTCAGAATTTAACTCC+TGG + Chr1:40196061-40196080 MsG0180002547.01.T01:intron 40.0%
TGTTAAGCTTGGCGAAACTA+GGG + Chr1:40194693-40194712 MsG0180002547.01.T01:five_prime_UTR 40.0%
TTGTTAAGCTTGGCGAAACT+AGG + Chr1:40194692-40194711 MsG0180002547.01.T01:five_prime_UTR 40.0%
! CTTGGACAAGATGAAGTATC+AGG + Chr1:40196684-40196703 MsG0180002547.01.T01:CDS 40.0%
! TCTTGTTGTCATTGCCATCT+TGG + Chr1:40195821-40195840 MsG0180002547.01.T01:intron 40.0%
!! AACTCTGTTGGTAGCTTGAT+GGG - Chr1:40196178-40196197 None:intergenic 40.0%
!! CTTGGAATGTCCTGTTTTTC+AGG + Chr1:40197020-40197039 MsG0180002547.01.T01:three_prime_UTR 40.0%
!! CTTTTGTTATGGAATCGGTG+TGG + Chr1:40195330-40195349 MsG0180002547.01.T01:intron 40.0%
!! GAGGGCTTTTGTTATGGAAT+CGG + Chr1:40195325-40195344 MsG0180002547.01.T01:intron 40.0%
!! TACTTTTCAAGACCCAACCT+TGG + Chr1:40195879-40195898 MsG0180002547.01.T01:intron 40.0%
!! TTGACCTGATTTGGAGATAG+AGG - Chr1:40194835-40194854 None:intergenic 40.0%
AACCAGCATCCCCATTTCAA+TGG + Chr1:40196225-40196244 MsG0180002547.01.T01:intron 45.0%
ACCAGCATCCCCATTTCAAT+GGG + Chr1:40196226-40196245 MsG0180002547.01.T01:intron 45.0%
AGAACCACCACCTGAAAAAC+AGG - Chr1:40197033-40197052 None:intergenic 45.0%
AGGGGATGAATCAGTTTCAG+TGG + Chr1:40196334-40196353 MsG0180002547.01.T01:intron 45.0%
AGTGGCATAGTTGTATGTGG+TGG + Chr1:40196145-40196164 MsG0180002547.01.T01:intron 45.0%
CAGCAAAAGAAGACAGCATC+TGG + Chr1:40196781-40196800 MsG0180002547.01.T01:CDS 45.0%
CCACAAGTAGAGCTGTGTTA+TGG + Chr1:40195133-40195152 MsG0180002547.01.T01:intron 45.0%
CCATAACACAGCTCTACTTG+TGG - Chr1:40195136-40195155 None:intergenic 45.0%
GCTAACAATATCGCCATTGG+TGG + Chr1:40196294-40196313 MsG0180002547.01.T01:intron 45.0%
GGGATCCTAGACTAGCATAT+TGG + Chr1:40196850-40196869 MsG0180002547.01.T01:three_prime_UTR 45.0%
GTGAGGGATTTGACCTGATT+TGG - Chr1:40194844-40194863 None:intergenic 45.0%
GTGTTCACAGCTTTCAGCAT+TGG + Chr1:40196727-40196746 MsG0180002547.01.T01:CDS 45.0%
TATGTTTGTGAGGTTGAGCG+AGG - Chr1:40195927-40195946 None:intergenic 45.0%
TTCATTCAACTGGCGTGAAG+AGG + Chr1:40196602-40196621 MsG0180002547.01.T01:CDS 45.0%
! ACAATATCGCCATTGGTGGT+AGG + Chr1:40196298-40196317 MsG0180002547.01.T01:intron 45.0%
! CAGATGCTGTCTTCTTTTGC+TGG - Chr1:40196783-40196802 None:intergenic 45.0%
! GCATATACTCTGGTTCGCTA+TGG - Chr1:40196645-40196664 None:intergenic 45.0%
!! ACTCTGTTGGTAGCTTGATG+GGG - Chr1:40196177-40196196 None:intergenic 45.0%
!! GAACTCTGTTGGTAGCTTGA+TGG - Chr1:40196179-40196198 None:intergenic 45.0%
!! GCGTGAGAGAGTTTTATGCT+CGG + Chr1:40196112-40196131 MsG0180002547.01.T01:intron 45.0%
!! TTCCTCTCCAACTGCTTTTG+AGG + Chr1:40196196-40196215 MsG0180002547.01.T01:intron 45.0%
!!! ATGTCCTGTTTTTCAGGTGG+TGG + Chr1:40197026-40197045 MsG0180002547.01.T01:three_prime_UTR 45.0%
!!! GGAATGTCCTGTTTTTCAGG+TGG + Chr1:40197023-40197042 MsG0180002547.01.T01:three_prime_UTR 45.0%
AGCCTCAAAAGCAGTTGGAG+AGG - Chr1:40196201-40196220 None:intergenic 50.0%
ATGCTCGGCATCTTCGTTAG+TGG + Chr1:40196127-40196146 MsG0180002547.01.T01:intron 50.0%
CAGTTGGAGAGGAACTCTGT+TGG - Chr1:40196190-40196209 None:intergenic 50.0%
CCAGCATCCCCATTTCAATG+GGG + Chr1:40196227-40196246 MsG0180002547.01.T01:intron 50.0%
CCATTTCAATGGGGTGGCAT+CGG + Chr1:40196236-40196255 MsG0180002547.01.T01:intron 50.0%
CGATGCCACCCCATTGAAAT+GGG - Chr1:40196238-40196257 None:intergenic 50.0%
GATGCCACCCCATTGAAATG+GGG - Chr1:40196237-40196256 None:intergenic 50.0%
GGCATAGTTGTATGTGGTGG+TGG + Chr1:40196148-40196167 MsG0180002547.01.T01:intron 50.0%
TCAACTGGCGTGAAGAGGAT+GGG + Chr1:40196607-40196626 MsG0180002547.01.T01:CDS 50.0%
TCTCTGACTTCTACCCTTCC+AGG - Chr1:40196082-40196101 None:intergenic 50.0%
TTCAACTGGCGTGAAGAGGA+TGG + Chr1:40196606-40196625 MsG0180002547.01.T01:CDS 50.0%
TTTGTGAGGTTGAGCGAGGA+TGG - Chr1:40195923-40195942 None:intergenic 50.0%
! AACTGATTCATCCCCTCCCA+TGG - Chr1:40196330-40196349 None:intergenic 50.0%
! ACTGATTCATCCCCTCCCAT+GGG - Chr1:40196329-40196348 None:intergenic 50.0%
! TTCAGGTGGTGGTTCTTCAG+TGG + Chr1:40197037-40197056 MsG0180002547.01.T01:three_prime_UTR 50.0%
AAGAGGATGGGAGGTGGACA+TGG + Chr1:40196619-40196638 MsG0180002547.01.T01:CDS 55.0%
CCCCATTGAAATGGGGATGC+TGG - Chr1:40196230-40196249 None:intergenic 55.0%
CCGATGCCACCCCATTGAAA+TGG - Chr1:40196239-40196258 None:intergenic 55.0%
GCATCCCCATTTCAATGGGG+TGG + Chr1:40196230-40196249 MsG0180002547.01.T01:intron 55.0%
! ATCGCCATTGGTGGTAGGTG+TGG + Chr1:40196303-40196322 MsG0180002547.01.T01:intron 55.0%
ACTGGCGTGAAGAGGATGGG+AGG + Chr1:40196610-40196629 MsG0180002547.01.T01:CDS 60.0%
TGGGCCACACCTACCACCAA+TGG - Chr1:40196310-40196329 None:intergenic 60.0%
TGGTGGTAGGTGTGGCCCAT+GGG + Chr1:40196311-40196330 MsG0180002547.01.T01:intron 60.0%
! TTGGTGGTAGGTGTGGCCCA+TGG + Chr1:40196310-40196329 MsG0180002547.01.T01:intron 60.0%
!! TTCAATGGGGTGGCATCGGC+TGG + Chr1:40196240-40196259 MsG0180002547.01.T01:intron 60.0%
GGCGTGAAGAGGATGGGAGG+TGG + Chr1:40196613-40196632 MsG0180002547.01.T01:CDS 65.0%
GGTAGGTGTGGCCCATGGGA+GGG + Chr1:40196315-40196334 MsG0180002547.01.T01:intron 65.0%
GTAGGTGTGGCCCATGGGAG+GGG + Chr1:40196316-40196335 MsG0180002547.01.T01:intron 65.0%
TGGTAGGTGTGGCCCATGGG+AGG + Chr1:40196314-40196333 MsG0180002547.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 40194679 40197141 40194679 ID=MsG0180002547.01;Name=MsG0180002547.01
Chr1 mRNA 40194679 40197141 40194679 ID=MsG0180002547.01.T01;Parent=MsG0180002547.01;Name=MsG0180002547.01.T01;_AED=0.42;_eAED=0.42;_QI=98|1|1|1|1|1|2|334|96
Chr1 exon 40194679 40194849 40194679 ID=MsG0180002547.01.T01:exon:37059;Parent=MsG0180002547.01.T01
Chr1 exon 40196590 40197141 40196590 ID=MsG0180002547.01.T01:exon:37060;Parent=MsG0180002547.01.T01
Chr1 five_prime_UTR 40194679 40194776 40194679 ID=MsG0180002547.01.T01:five_prime_utr;Parent=MsG0180002547.01.T01
Chr1 CDS 40194777 40194849 40194777 ID=MsG0180002547.01.T01:cds;Parent=MsG0180002547.01.T01
Chr1 CDS 40196590 40196807 40196590 ID=MsG0180002547.01.T01:cds;Parent=MsG0180002547.01.T01
Chr1 three_prime_UTR 40196808 40197141 40196808 ID=MsG0180002547.01.T01:three_prime_utr;Parent=MsG0180002547.01.T01
Gene Sequence

>MsG0180002547.01.T01

ATGGCATTGAACAACGGTCTCAGATCTGCTGCGAAGCTAATTGCTTCTTCTGAATCCTCTATCTCCAAATCAGTGAGTAGAGGATTTCATTCAACTGGCGTGAAGAGGATGGGAGGTGGACATGGCCATAGCGAACCAGAGTATATGCATGCATATCACATGTACAACTTGGACAAGATGAAGTATCAGGGTTTGAAAATGTCTCTTGCTGTGTTCACAGCTTTCAGCATTGGTGTTGCAGTTCCTGTGTATGCAGTCATTTTCCAGCAAAAGAAGACAGCATCTGGCTGA

Protein sequence

>MsG0180002547.01.T01

MALNNGLRSAAKLIASSESSISKSVSRGFHSTGVKRMGGGHGHSEPEYMHAYHMYNLDKMKYQGLKMSLAVFTAFSIGVAVPVYAVIFQQKKTASG*