AlfalfaGEDB | MsG0280008347.01

M. sativa cultivar ZhongmuNo.1 / MsG0280008347.01

KEGG: -
GO: -
PFAM: PF10998

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280008347.01.T01	XP_013463471.2	98.286	350	6	0	52	401	1	350	0	709

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280008347.01.T01	B9RK42	76.519	362	66	2	54	396	1	362	0	577

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280008347.01.T01	A0A396J8A6	98.286	350	6	0	52	401	1	350	0.0	709

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000799.01	MsG0280008347.01	0.817425	3.319301e-52	2.416536e-49
MsG0180001043.01	MsG0280008347.01	0.800826	1.201181e-48	5.648247e-46
MsG0180006016.01	MsG0280008347.01	0.812056	5.135985e-51	3.231873e-48
MsG0280008347.01	MsG0280010531.01	0.806770	6.998905e-50	3.831243e-47
MsG0280008347.01	MsG0280011235.01	0.801857	7.386641e-49	3.565317e-46
MsG0280008347.01	MsG0380011729.01	0.813981	1.943910e-51	1.288211e-48
MsG0280008347.01	MsG0380017403.01	0.813483	2.501620e-51	1.635746e-48
MsG0280008347.01	MsG0480021731.01	0.827841	1.251912e-54	1.222817e-51
MsG0280008347.01	MsG0480023517.01	0.805042	1.615639e-49	8.461035e-47
MsG0280008347.01	MsG0680031654.01	0.803331	3.668956e-49	1.838612e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280008347.01.T01	MTR_2g040600	98.276	348	6	0	54	401	1	348	0.0	705
MsG0280008347.01.T01	MTR_4g125680	76.687	326	70	2	54	375	1	324	0.0	527
MsG0280008347.01.T01	MTR_2g039830	55.747	174	41	3	249	394	86	251	1.22e-53	179
MsG0280008347.01.T01	MTR_2g039840	65.000	100	28	1	301	400	57	149	1.37e-35	128
MsG0280008347.01.T01	MTR_1g008180	69.492	59	18	0	262	320	1	59	3.46e-22	89.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280008347.01.T01	AT5G35460	75.843	356	68	2	57	394	3	358	0.0	558
MsG0280008347.01.T01	AT5G35460	75.843	356	68	2	57	394	3	358	0.0	558

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Find 85 sgRNAs with CRISPR-Local

Find 532 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCCATGTACATAGAT+AGG	0.426768	2:+29779858	None:intergenic
AACATGTGGTGGCGCTTAAG+TGG	0.500643	2:-29779400	MsG0280008347.01.T01:CDS
AATGTTTACGGTGGCAACGA+TGG	0.607699	2:-29779329	MsG0280008347.01.T01:CDS
AATTTATAGGACAAGAATAT+CGG	0.491436	2:+29779295	None:intergenic
ACAATCAATGCCCATGCTAA+CGG	0.568226	2:+29781502	None:intergenic
ACATACTCATTGAACAACGT+TGG	0.605939	2:+29783743	None:intergenic
ACATGAAAGTTTCATCAACA+AGG	0.659659	2:-29783461	MsG0280008347.01.T01:intron
ACGTTTGAGAGATAGGTCAA+AGG	0.649881	2:-29783662	MsG0280008347.01.T01:intron
ACTCATTGAACAACGTTGGA+TGG	0.548800	2:+29783747	None:intergenic
ACTCATTTATTGAATGTTCT+TGG	0.292836	2:-29783241	MsG0280008347.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACACCTACTGTACAAAAA+CGG	+	Chr2:29786898-29786917	None:intergenic	30.0%
AAACATATTGGAAACACATG+GGG	-	Chr2:29780759-29780778	MsG0280008347.01.T01:intron	30.0%
AACAAAAAGGCTAAAGATGT+AGG	-	Chr2:29785552-29785571	MsG0280008347.01.T01:intron	30.0%
AACTATTGTTCATGTGTTTC+AGG	-	Chr2:29784695-29784714	MsG0280008347.01.T01:intron	30.0%
AAGACTTATGTAAACATTGG+AGG	-	Chr2:29784229-29784248	MsG0280008347.01.T01:intron	30.0%
AAGTGTCAAAACCATGTTAT+CGG	-	Chr2:29783786-29783805	MsG0280008347.01.T01:CDS	30.0%
AATTGTACAGCATGAAACAT+GGG	+	Chr2:29786229-29786248	None:intergenic	30.0%
ACACTCTTTGTCAATTTATC+GGG	-	Chr2:29779863-29779882	MsG0280008347.01.T01:CDS	30.0%
ACAGAAGGGTAAAAACATAT+TGG	-	Chr2:29780747-29780766	MsG0280008347.01.T01:intron	30.0%
ACAGATAAGTAGTAATGCAA+GGG	+	Chr2:29786162-29786181	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	29778751	29787676	29778751	ID=MsG0280008347.01;Name=MsG0280008347.01
Chr2	mRNA	29778751	29787676	29778751	ID=MsG0280008347.01.T01;Parent=MsG0280008347.01;Name=MsG0280008347.01.T01;_AED=0.52;_eAED=0.52;_QI=0\|0.87\|0.77\|1\|0.87\|0.77\|9\|396\|401
Chr2	exon	29778751	29779453	29778751	ID=MsG0280008347.01.T01:exon:6706;Parent=MsG0280008347.01.T01
Chr2	exon	29779748	29779985	29779748	ID=MsG0280008347.01.T01:exon:6705;Parent=MsG0280008347.01.T01
Chr2	exon	29781434	29781527	29781434	ID=MsG0280008347.01.T01:exon:6704;Parent=MsG0280008347.01.T01
Chr2	exon	29781615	29781710	29781615	ID=MsG0280008347.01.T01:exon:6703;Parent=MsG0280008347.01.T01
Chr2	exon	29782997	29783097	29782997	ID=MsG0280008347.01.T01:exon:6702;Parent=MsG0280008347.01.T01
Chr2	exon	29783209	29783266	29783209	ID=MsG0280008347.01.T01:exon:6701;Parent=MsG0280008347.01.T01
Chr2	exon	29783462	29783530	29783462	ID=MsG0280008347.01.T01:exon:6700;Parent=MsG0280008347.01.T01
Chr2	exon	29783663	29783814	29783663	ID=MsG0280008347.01.T01:exon:6699;Parent=MsG0280008347.01.T01
Chr2	exon	29787586	29787676	29787586	ID=MsG0280008347.01.T01:exon:6698;Parent=MsG0280008347.01.T01
Chr2	CDS	29787586	29787676	29787586	ID=MsG0280008347.01.T01:cds;Parent=MsG0280008347.01.T01
Chr2	CDS	29783663	29783814	29783663	ID=MsG0280008347.01.T01:cds;Parent=MsG0280008347.01.T01
Chr2	CDS	29783462	29783530	29783462	ID=MsG0280008347.01.T01:cds;Parent=MsG0280008347.01.T01
Chr2	CDS	29783209	29783266	29783209	ID=MsG0280008347.01.T01:cds;Parent=MsG0280008347.01.T01
Chr2	CDS	29782997	29783097	29782997	ID=MsG0280008347.01.T01:cds;Parent=MsG0280008347.01.T01
Chr2	CDS	29781615	29781710	29781615	ID=MsG0280008347.01.T01:cds;Parent=MsG0280008347.01.T01
Chr2	CDS	29781434	29781527	29781434	ID=MsG0280008347.01.T01:cds;Parent=MsG0280008347.01.T01
Chr2	CDS	29779748	29779985	29779748	ID=MsG0280008347.01.T01:cds;Parent=MsG0280008347.01.T01
Chr2	CDS	29779147	29779453	29779147	ID=MsG0280008347.01.T01:cds;Parent=MsG0280008347.01.T01
Chr2	three_prime_UTR	29778751	29779146	29778751	ID=MsG0280008347.01.T01:three_prime_utr;Parent=MsG0280008347.01.T01

Gene Sequence

>MsG0280008347.01.T01

ATGTCACTAGATGCAAGAATCGATGGCAATGGCATAGATTTAAGGTGTTTTGGTGGAATTCAAGATCAAGGTCTTGATCCCGGCGAAGACGTTTCTGCAAAACATAACATCATCACCATAGTTGTTTGTTCTGGATCCATCCAACGTTGTTCAATGAGTATGTCTGAAAACGAAGAACACGTAGATTACACCGACATCGAACCTTCTGCAGCGGCTAGAAAACGTTTGAGAGATAGGTCAAAGGAGGTGTTGTCTAAACAAGCTGTTAAGATCGCTAAACGTGCTGAAGAACATGAAAGTTTCATCAACAAGGTTACTCATTTATTGAATGTTCTTGGCTTTGGTGGTTTTTGTTTCATCTTAGGAGCAAGACCACAAGATGTTCCTTTAGTGTATTGTTTGTTCTACTTTGTCTTTGTTCCTCTTCGTTGGATATACTATAGGTTCAAGAAATGGCATTACTATCTCCTGGATTTTTGCTACTATGCCAATACAATCTTTTTGGTTTACCTTATTTTTTATCCAAAGAATGAGAAGCTTTTTCTGGTCTGCTTTTCATTTGCTGAGGGTCCGTTAGCATGGGCATTGATTGTTTGGCGTTGCAGTTTGGTGTTCAGTTCGCTTGACAAAATCGTTAGTGTTCTTATCCATCTTTTACCAGGATTGGTTTTCTTTACTATTCGATGGTGGAATCCTGAGACCTTAGAAGCTATGCGACCAGAGGGAGCTGCCGCAAGAGTTACATGGCCTTATATTGAAGATAAATCCTATCTATGTACATGGCTGTTTCTGGTTCCCTTAGTAGTTTACACCTTGTGGCAGATTCTATACTACCTCATTGTCAATGTCTTACGCCGACAACGGTTTTTAAGAGATCCTGAAGTCATGACTTCCTATAGGGAACTGTCTAAAAAAGCTCAGAAAGCAAATAACATGTGGTGGCGCTTAAGTGGCTTGCTCGGGGATCAAAACCGCTTGTTAATGTTCATTCTTCTTCAAGGAATGTTTACGGTGGCAACGATGGCGCTGACTGTTCCGATATTCTTGTCCTATAAATTGTCAGTGGTTTTTCAAATACTGAAGGTTTCTGCATCAGTGTGGAATGGAGCAAGCTTTCTGTTGGAAGTTATGCCTAGGCAGGTTATTCTCAAGGAGAAAAAGAAAACAGAGATGCAAACTGTTCCAATACTAAATGATCAATCATAG

Protein sequence

>MsG0280008347.01.T01

MSLDARIDGNGIDLRCFGGIQDQGLDPGEDVSAKHNIITIVVCSGSIQRCSMSMSENEEHVDYTDIEPSAAARKRLRDRSKEVLSKQAVKIAKRAEEHESFINKVTHLLNVLGFGGFCFILGARPQDVPLVYCLFYFVFVPLRWIYYRFKKWHYYLLDFCYYANTIFLVYLIFYPKNEKLFLVCFSFAEGPLAWALIVWRCSLVFSSLDKIVSVLIHLLPGLVFFTIRWWNPETLEAMRPEGAAARVTWPYIEDKSYLCTWLFLVPLVVYTLWQILYYLIVNVLRRQRFLRDPEVMTSYRELSKKAQKANNMWWRLSGLLGDQNRLLMFILLQGMFTVATMALTVPIFLSYKLSVVFQILKVSASVWNGASFLLEVMPRQVILKEKKKTEMQTVPILNDQS*