AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041399.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041399.01.T01 MTR_7g110170 95.588 408 13 1 1 403 419 826 0.0 795
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041399.01.T01 AT3G62240 40.143 421 186 10 1 398 431 808 1.20e-74 248
MsG0780041399.01.T01 AT2G47090 35.110 319 148 8 91 402 476 742 4.39e-40 152
MsG0780041399.01.T01 AT2G47090 35.110 319 148 8 91 402 492 758 4.78e-40 152
MsG0780041399.01.T01 AT2G47090 35.110 319 148 8 91 402 499 765 5.41e-40 152
MsG0780041399.01.T01 AT2G47090 35.110 319 148 8 91 402 455 721 5.98e-40 151
MsG0780041399.01.T01 AT2G47090 35.110 319 148 8 91 402 472 738 7.27e-40 151

Find 114 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGTATCTGTTATTAATTC+TGG 0.169185 7:+90486802 MsG0780041399.01.T01:CDS
CAAGAAAATGACGGGGTTTA+TGG 0.195895 7:+90487426 MsG0780041399.01.T01:CDS
AATGGTAACAATAATGATTC+TGG 0.227254 7:+90487897 MsG0780041399.01.T01:CDS
TTGGCTGAATGGGATGATTT+TGG 0.271061 7:+90488172 MsG0780041399.01.T01:three_prime_UTR
TTGTAGAAACCACAGTTAAA+AGG 0.280870 7:+90488023 MsG0780041399.01.T01:three_prime_UTR
CTCACTTGTGCAGCAGAAAC+TGG 0.284959 7:-90487105 None:intergenic
GGAACAACAGACAGTTTAAA+TGG 0.299042 7:+90487879 MsG0780041399.01.T01:CDS
GCTCTGTGGCTTTGAAAATC+AGG 0.326631 7:+90487985 MsG0780041399.01.T01:three_prime_UTR
ACAACAAAGTCTCAAAATTC+TGG 0.329736 7:+90486880 MsG0780041399.01.T01:CDS
TTTAAACTGTCTGTTGTTCC+AGG 0.338754 7:-90487876 None:intergenic
AAAATCAGGCACACTTGAAT+TGG 0.340918 7:+90487999 MsG0780041399.01.T01:three_prime_UTR
CAAAGCCACAGAGCAGAATC+AGG 0.344177 7:-90487976 None:intergenic
CTTAGGAGGTAATCATTTCA+TGG 0.349756 7:+90488073 MsG0780041399.01.T01:three_prime_UTR
TCGGAAGCAGAGAGAACTTT+TGG 0.358351 7:+90487368 MsG0780041399.01.T01:CDS
TCTCTCTGCTTCCGAGCATC+CGG 0.369430 7:-90487360 None:intergenic
CAGTTTATCTAATCAAAATA+AGG 0.369601 7:+90487734 MsG0780041399.01.T01:CDS
AACAATAATGATTCTGGAGT+TGG 0.372582 7:+90487903 MsG0780041399.01.T01:CDS
TTCAAGTGTTCATATGAAAG+TGG 0.409267 7:+90488215 MsG0780041399.01.T01:three_prime_UTR
AAGGTAAGTCATTAGATGTT+AGG 0.416037 7:+90487496 MsG0780041399.01.T01:CDS
GTACGAGGTGTTTGGCGAAA+GGG 0.419262 7:+90487933 MsG0780041399.01.T01:CDS
GGCTGCCTGTACGAGGTGTT+TGG 0.421031 7:+90487925 MsG0780041399.01.T01:CDS
ATTTCTCTAGTACTCATATC+AGG 0.421614 7:-90488362 None:intergenic
CTGAATTCCATTGGCTGAAT+GGG 0.436486 7:+90488162 MsG0780041399.01.T01:three_prime_UTR
TCAGAAATTGAAACTCCAAC+AGG 0.437868 7:-90487075 None:intergenic
GTTTCATCTTGTACCTGAGC+TGG 0.443738 7:+90487326 MsG0780041399.01.T01:CDS
CTCAGAGTGCGCCTTGGTGA+TGG 0.448748 7:+90487804 MsG0780041399.01.T01:CDS
GCTGAATTCCATTGGCTGAA+TGG 0.451935 7:+90488161 MsG0780041399.01.T01:three_prime_UTR
TGTTAATTACTGTCTTCATC+TGG 0.454941 7:-90486903 None:intergenic
TCAAGGACCACTTCTGATCC+TGG 0.464866 7:+90487858 MsG0780041399.01.T01:CDS
TGTAGAAACCACAGTTAAAA+GGG 0.466620 7:+90488024 MsG0780041399.01.T01:three_prime_UTR
AGCGGAGGCTGGCTACTTGT+AGG 0.475176 7:-90487135 None:intergenic
TAAACCTTCAGAAGAGAAGT+TGG 0.476136 7:+90487587 MsG0780041399.01.T01:CDS
AAGGCGCACTCTGAGGAACT+TGG 0.478049 7:-90487796 None:intergenic
ACAATAATGATTCTGGAGTT+GGG 0.488582 7:+90487904 MsG0780041399.01.T01:CDS
TCTAATCAAAATAAGGAGGA+TGG 0.493564 7:+90487741 MsG0780041399.01.T01:CDS
TCTCCACATTCAGCGGAGGC+TGG 0.494500 7:-90487146 None:intergenic
CCTTGGTGATGGTTCTGCTT+CGG 0.495622 7:+90487815 MsG0780041399.01.T01:CDS
ACCTCCAACTTCTCTTCTGA+AGG 0.497647 7:-90487591 None:intergenic
TGTACGAGGTGTTTGGCGAA+AGG 0.499209 7:+90487932 MsG0780041399.01.T01:CDS
TTATTAATTCTGGAAATGCC+TGG 0.499763 7:+90486812 MsG0780041399.01.T01:CDS
ACACTTTCCAAGAAAATGAC+GGG 0.501766 7:+90487418 MsG0780041399.01.T01:CDS
CTAATCAAAATAAGGAGGAT+GGG 0.502336 7:+90487742 MsG0780041399.01.T01:CDS
GTGGACTGTGTGCAGCAGTT+TGG 0.503287 7:+90487300 MsG0780041399.01.T01:CDS
CTAGAGTTTGTTTGAATCTG+CGG 0.504344 7:-90487663 None:intergenic
TTAGATTGCGAAGGTTGTAC+AGG 0.504697 7:-90486853 None:intergenic
TGTTGAAGGCTGAATTCCAT+TGG 0.505006 7:+90488153 MsG0780041399.01.T01:three_prime_UTR
TCAGTCTGCCAACAAGTCCT+TGG 0.512432 7:+90487173 MsG0780041399.01.T01:CDS
TTGTCACGTGTGTCCTTCGA+TGG 0.515439 7:-90487003 None:intergenic
TCAAGTACAGCAAGCTGGCA+TGG 0.516669 7:+90488116 MsG0780041399.01.T01:three_prime_UTR
CAAGACTATGCCCGGATGCT+CGG 0.518385 7:+90487349 MsG0780041399.01.T01:CDS
GGGCATAGTCTTGCCAGCTC+AGG 0.520862 7:-90487339 None:intergenic
CTCTCTGCTTCCGAGCATCC+GGG 0.523316 7:-90487359 None:intergenic
TAATCAAAATAAGGAGGATG+GGG 0.524367 7:+90487743 MsG0780041399.01.T01:CDS
GAATTAGCAAAACTTGATGC+TGG 0.526095 7:-90486934 None:intergenic
CAAGTACAGCAAGCTGGCAT+GGG 0.527223 7:+90488117 MsG0780041399.01.T01:three_prime_UTR
AACATAAGACTAAGCTTGGT+GGG 0.530293 7:+90487691 MsG0780041399.01.T01:CDS
GAAGTTGGAGGTGCTATCAA+AGG 0.531226 7:+90487602 MsG0780041399.01.T01:CDS
AGTCAACATAAGACTAAGCT+TGG 0.534231 7:+90487687 MsG0780041399.01.T01:CDS
AATGTCGACAAGAAAGGTAA+AGG 0.536933 7:+90487477 MsG0780041399.01.T01:CDS
CTCGTTGAAAACAACCCTGT+TGG 0.539026 7:+90487060 MsG0780041399.01.T01:CDS
AAATCATCCCATTCAGCCAA+TGG 0.539617 7:-90488169 None:intergenic
TACGAGGTGTTTGGCGAAAG+GGG 0.542527 7:+90487934 MsG0780041399.01.T01:CDS
GGGCAGACTGAAACTTCAAA+TGG 0.546857 7:+90487711 MsG0780041399.01.T01:CDS
GATAGATACTGATGCATATG+TGG 0.548437 7:+90487281 MsG0780041399.01.T01:CDS
TGAGCTGGCAAGACTATGCC+CGG 0.549756 7:+90487341 MsG0780041399.01.T01:CDS
GTGTCCTTCGATGGACCAGC+AGG 0.556123 7:-90486994 None:intergenic
AGATTTCAAGTACAGCAAGC+TGG 0.556264 7:+90488111 MsG0780041399.01.T01:three_prime_UTR
TAGCCAGCCTCCGCTGAATG+TGG 0.558724 7:+90487143 MsG0780041399.01.T01:CDS
GGTGCTTATCGCACCGACAA+AGG 0.559739 7:+90487624 MsG0780041399.01.T01:CDS
CAGCGCTAGCACCCATCGCA+AGG 0.559993 7:+90487449 MsG0780041399.01.T01:CDS
CATCAGTATCTATCGTGCCT+TGG 0.562624 7:-90487272 None:intergenic
TTTCGCCAAACACCTCGTAC+AGG 0.565462 7:-90487930 None:intergenic
TTCTAGATCTTGAAAACTCA+AGG 0.570577 7:+90487841 MsG0780041399.01.T01:CDS
GCTGCACATAGAACTGCTCA+TGG 0.574984 7:+90486964 MsG0780041399.01.T01:CDS
GGTTGTACAGGTCCACGACT+TGG 0.578137 7:-90486841 None:intergenic
AAGTTGGAGGTGCTATCAAA+GGG 0.579069 7:+90487603 MsG0780041399.01.T01:CDS
CTTCCCCTGATTCTGCTCTG+TGG 0.579349 7:+90487971 MsG0780041399.01.T01:exon
AAAGCCACAGAGCAGAATCA+GGG 0.580520 7:-90487975 None:intergenic
TCGAAGGACACACGTGACAA+TGG 0.581101 7:+90487006 MsG0780041399.01.T01:CDS
CAACATAAGACTAAGCTTGG+TGG 0.581293 7:+90487690 MsG0780041399.01.T01:CDS
GCTCATGGAAAACTACCTGC+TGG 0.585320 7:+90486979 MsG0780041399.01.T01:CDS
TCAAGTGTTCATATGAAAGT+GGG 0.586006 7:+90488216 MsG0780041399.01.T01:three_prime_UTR
ACGAGGTGTTTGGCGAAAGG+GGG 0.591849 7:+90487935 MsG0780041399.01.T01:CDS
CGAGGTGTTTGGCGAAAGGG+GGG 0.592185 7:+90487936 MsG0780041399.01.T01:CDS
ATGATAGAATTCATGTCGGT+TGG 0.593233 7:+90488336 MsG0780041399.01.T01:three_prime_UTR
AAGTTCCTCAGAGTGCGCCT+TGG 0.601135 7:+90487798 MsG0780041399.01.T01:CDS
ACAAAGCAAAACAGTACACT+TGG 0.601552 7:-90488241 None:intergenic
TCCACGACTTGGTACAGACC+AGG 0.607283 7:-90486830 None:intergenic
AACACTTTCCAAGAAAATGA+CGG 0.610939 7:+90487417 MsG0780041399.01.T01:CDS
GCCTGGTCTGTACCAAGTCG+TGG 0.614242 7:+90486829 MsG0780041399.01.T01:CDS
TGTTGTTCCAGGATCAGAAG+TGG 0.615164 7:-90487865 None:intergenic
GCCGCACGTTTACGTCGGCA+TGG 0.617464 7:+90486772 MsG0780041399.01.T01:CDS
GAATATTTATAAAACGAACA+TGG 0.620125 7:+90488391 MsG0780041399.01.T01:three_prime_UTR
AAGCCACAGAGCAGAATCAG+GGG 0.627092 7:-90487974 None:intergenic
ACTACCTGCTGGTCCATCGA+AGG 0.630114 7:+90486990 MsG0780041399.01.T01:CDS
ACCTTCAGAAGAGAAGTTGG+AGG 0.630190 7:+90487590 MsG0780041399.01.T01:CDS
CACTTTCCAAGAAAATGACG+GGG 0.631121 7:+90487419 MsG0780041399.01.T01:CDS
TTTATCTAATCAAAATAAGG+AGG 0.631516 7:+90487737 MsG0780041399.01.T01:CDS
CAGAAATTGAAACTCCAACA+GGG 0.633314 7:-90487074 None:intergenic
TCAATGATTGAGCATATGCG+TGG 0.644537 7:+90488417 MsG0780041399.01.T01:three_prime_UTR
GGAGTTGGGCTGCCTGTACG+AGG 0.647685 7:+90487918 MsG0780041399.01.T01:CDS
TGAACATTCTCCACATTCAG+CGG 0.650353 7:-90487153 None:intergenic
CATCACCAAGGCGCACTCTG+AGG 0.652241 7:-90487803 None:intergenic
ATATCTGCTCAATATCGCCA+AGG 0.662686 7:+90487255 MsG0780041399.01.T01:CDS
CCGAAGCAGAACCATCACCA+AGG 0.667674 7:-90487815 None:intergenic
ACATTCTCCACATTCAGCGG+AGG 0.667936 7:-90487150 None:intergenic
CTGAATGATAGAATTCATGT+CGG 0.671549 7:+90488332 MsG0780041399.01.T01:three_prime_UTR
GTAAGTCATTAGATGTTAGG+CGG 0.674875 7:+90487499 MsG0780041399.01.T01:CDS
ACTTGTGCAGCAGAAACTGG+AGG 0.676117 7:-90487102 None:intergenic
CCATGGCCGCACGTTTACGT+CGG 0.678172 7:+90486767 None:intergenic
ATGAAGACAGTAATTAACAG+TGG 0.678648 7:+90486907 MsG0780041399.01.T01:CDS
GCTATCTGCTAATCTCTCAG+TGG 0.687825 7:-90487529 None:intergenic
GCCATGCCGACGTAAACGTG+CGG 0.707625 7:-90486773 None:intergenic
AATCAAAATAAGGAGGATGG+GGG 0.708920 7:+90487744 MsG0780041399.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTAATTTACCTTTGT+CGG - Chr7:90487640-90487659 None:intergenic 15.0%
!! AATGTATCTGTTATTAATTC+TGG + Chr7:90486802-90486821 MsG0780041399.01.T01:CDS 20.0%
!! CAGTTTATCTAATCAAAATA+AGG + Chr7:90487734-90487753 MsG0780041399.01.T01:CDS 20.0%
!! GAATATTTATAAAACGAACA+TGG + Chr7:90488391-90488410 MsG0780041399.01.T01:three_prime_UTR 20.0%
!! TTTATCTAATCAAAATAAGG+AGG + Chr7:90487737-90487756 MsG0780041399.01.T01:CDS 20.0%
!!! AAAGAATTGAATTTTTGCTT+AGG + Chr7:90488056-90488075 MsG0780041399.01.T01:three_prime_UTR 20.0%
! AATGGTAACAATAATGATTC+TGG + Chr7:90487897-90487916 MsG0780041399.01.T01:CDS 25.0%
AACACTTTCCAAGAAAATGA+CGG + Chr7:90487417-90487436 MsG0780041399.01.T01:CDS 30.0%
AAGGTAAGTCATTAGATGTT+AGG + Chr7:90487496-90487515 MsG0780041399.01.T01:CDS 30.0%
ACAACAAAGTCTCAAAATTC+TGG + Chr7:90486880-90486899 MsG0780041399.01.T01:CDS 30.0%
ATGAAGACAGTAATTAACAG+TGG + Chr7:90486907-90486926 MsG0780041399.01.T01:CDS 30.0%
ATTTCTCTAGTACTCATATC+AGG - Chr7:90488365-90488384 None:intergenic 30.0%
CTAATCAAAATAAGGAGGAT+GGG + Chr7:90487742-90487761 MsG0780041399.01.T01:CDS 30.0%
CTGAATGATAGAATTCATGT+CGG + Chr7:90488332-90488351 MsG0780041399.01.T01:three_prime_UTR 30.0%
TAATCAAAATAAGGAGGATG+GGG + Chr7:90487743-90487762 MsG0780041399.01.T01:CDS 30.0%
TCAAGTGTTCATATGAAAGT+GGG + Chr7:90488216-90488235 MsG0780041399.01.T01:three_prime_UTR 30.0%
TCTAATCAAAATAAGGAGGA+TGG + Chr7:90487741-90487760 MsG0780041399.01.T01:CDS 30.0%
TGTAGAAACCACAGTTAAAA+GGG + Chr7:90488024-90488043 MsG0780041399.01.T01:three_prime_UTR 30.0%
TGTTAATTACTGTCTTCATC+TGG - Chr7:90486906-90486925 None:intergenic 30.0%
TTCAAGTGTTCATATGAAAG+TGG + Chr7:90488215-90488234 MsG0780041399.01.T01:three_prime_UTR 30.0%
TTCTAGATCTTGAAAACTCA+AGG + Chr7:90487841-90487860 MsG0780041399.01.T01:CDS 30.0%
TTGTAGAAACCACAGTTAAA+AGG + Chr7:90488023-90488042 MsG0780041399.01.T01:three_prime_UTR 30.0%
! GAATTGAATTTTTGCTTAGG+AGG + Chr7:90488059-90488078 MsG0780041399.01.T01:three_prime_UTR 30.0%
! TTATTAATTCTGGAAATGCC+TGG + Chr7:90486812-90486831 MsG0780041399.01.T01:CDS 30.0%
!! AACAATAATGATTCTGGAGT+TGG + Chr7:90487903-90487922 MsG0780041399.01.T01:CDS 30.0%
!! ACAATAATGATTCTGGAGTT+GGG + Chr7:90487904-90487923 MsG0780041399.01.T01:CDS 30.0%
!! TGAGTTTTCAAGATCTAGAA+GGG - Chr7:90487841-90487860 None:intergenic 30.0%
!! TTGAGTTTTCAAGATCTAGA+AGG - Chr7:90487842-90487861 None:intergenic 30.0%
!!! GAATTTTGTTGTTGTGTTGA+AGG + Chr7:90488139-90488158 MsG0780041399.01.T01:three_prime_UTR 30.0%
AAAATCAGGCACACTTGAAT+TGG + Chr7:90487999-90488018 MsG0780041399.01.T01:three_prime_UTR 35.0%
AACATAAGACTAAGCTTGGT+GGG + Chr7:90487691-90487710 MsG0780041399.01.T01:CDS 35.0%
AATCAAAATAAGGAGGATGG+GGG + Chr7:90487744-90487763 MsG0780041399.01.T01:CDS 35.0%
AATGTCGACAAGAAAGGTAA+AGG + Chr7:90487477-90487496 MsG0780041399.01.T01:CDS 35.0%
ACAAAGCAAAACAGTACACT+TGG - Chr7:90488244-90488263 None:intergenic 35.0%
ACACTTTCCAAGAAAATGAC+GGG + Chr7:90487418-90487437 MsG0780041399.01.T01:CDS 35.0%
AGTCAACATAAGACTAAGCT+TGG + Chr7:90487687-90487706 MsG0780041399.01.T01:CDS 35.0%
ATGATAGAATTCATGTCGGT+TGG + Chr7:90488336-90488355 MsG0780041399.01.T01:three_prime_UTR 35.0%
CAGAAATTGAAACTCCAACA+GGG - Chr7:90487077-90487096 None:intergenic 35.0%
CTTAGGAGGTAATCATTTCA+TGG + Chr7:90488073-90488092 MsG0780041399.01.T01:three_prime_UTR 35.0%
GAATTAGCAAAACTTGATGC+TGG - Chr7:90486937-90486956 None:intergenic 35.0%
GACAAAAATGTCGACAAGAA+AGG + Chr7:90487471-90487490 MsG0780041399.01.T01:CDS 35.0%
GATAGATACTGATGCATATG+TGG + Chr7:90487281-90487300 MsG0780041399.01.T01:CDS 35.0%
GGAACAACAGACAGTTTAAA+TGG + Chr7:90487879-90487898 MsG0780041399.01.T01:CDS 35.0%
GTAAGTCATTAGATGTTAGG+CGG + Chr7:90487499-90487518 MsG0780041399.01.T01:CDS 35.0%
TAAACCTTCAGAAGAGAAGT+TGG + Chr7:90487587-90487606 MsG0780041399.01.T01:CDS 35.0%
TCAGAAATTGAAACTCCAAC+AGG - Chr7:90487078-90487097 None:intergenic 35.0%
TTTAAACTGTCTGTTGTTCC+AGG - Chr7:90487879-90487898 None:intergenic 35.0%
! ACTACGAATCTTTTCAACCA+AGG - Chr7:90487193-90487212 None:intergenic 35.0%
! CTAGAGTTTGTTTGAATCTG+CGG - Chr7:90487666-90487685 None:intergenic 35.0%
! GTTGTCTTTTTAGATTGCGA+AGG - Chr7:90486865-90486884 None:intergenic 35.0%
! TGTTTTGCTTTGTACTCAAG+TGG + Chr7:90488251-90488270 MsG0780041399.01.T01:three_prime_UTR 35.0%
!! TGTTCAATCCCTTTTAACTG+TGG - Chr7:90488035-90488054 None:intergenic 35.0%
AAATCATCCCATTCAGCCAA+TGG - Chr7:90488172-90488191 None:intergenic 40.0%
ATATCTGCTCAATATCGCCA+AGG + Chr7:90487255-90487274 MsG0780041399.01.T01:CDS 40.0%
CAACATAAGACTAAGCTTGG+TGG + Chr7:90487690-90487709 MsG0780041399.01.T01:CDS 40.0%
CACTTTCCAAGAAAATGACG+GGG + Chr7:90487419-90487438 MsG0780041399.01.T01:CDS 40.0%
TCAATGATTGAGCATATGCG+TGG + Chr7:90488417-90488436 MsG0780041399.01.T01:three_prime_UTR 40.0%
TGAACATTCTCCACATTCAG+CGG - Chr7:90487156-90487175 None:intergenic 40.0%
TGTTGAAGGCTGAATTCCAT+TGG + Chr7:90488153-90488172 MsG0780041399.01.T01:three_prime_UTR 40.0%
TTAGATTGCGAAGGTTGTAC+AGG - Chr7:90486856-90486875 None:intergenic 40.0%
! AGATTTCAAGTACAGCAAGC+TGG + Chr7:90488111-90488130 MsG0780041399.01.T01:three_prime_UTR 40.0%
! CAAGAAAATGACGGGGTTTA+TGG + Chr7:90487426-90487445 MsG0780041399.01.T01:CDS 40.0%
! CTGAATTCCATTGGCTGAAT+GGG + Chr7:90488162-90488181 MsG0780041399.01.T01:three_prime_UTR 40.0%
! CTTTTCAACCAAGGACTTGT+TGG - Chr7:90487184-90487203 None:intergenic 40.0%
! GACATTTTTGTCCTTGCGAT+GGG - Chr7:90487463-90487482 None:intergenic 40.0%
! GAGCATATGCGTGGAATTTT+TGG + Chr7:90488426-90488445 MsG0780041399.01.T01:three_prime_UTR 40.0%
! TTGGCTGAATGGGATGATTT+TGG + Chr7:90488172-90488191 MsG0780041399.01.T01:three_prime_UTR 40.0%
!! AAGTTGGAGGTGCTATCAAA+GGG + Chr7:90487603-90487622 MsG0780041399.01.T01:CDS 40.0%
!! CATAAACCCCGTCATTTTCT+TGG - Chr7:90487428-90487447 None:intergenic 40.0%
!! CTGAATGGGATGATTTTGGT+TGG + Chr7:90488176-90488195 MsG0780041399.01.T01:three_prime_UTR 40.0%
!!! CTTTTGGAGTCTTACAATGC+TGG + Chr7:90487384-90487403 MsG0780041399.01.T01:CDS 40.0%
!!! GGATGATTTTGGTTGGTTTG+GGG + Chr7:90488183-90488202 MsG0780041399.01.T01:three_prime_UTR 40.0%
!!! GGGATGATTTTGGTTGGTTT+GGG + Chr7:90488182-90488201 MsG0780041399.01.T01:three_prime_UTR 40.0%
!!! TGGGATGATTTTGGTTGGTT+TGG + Chr7:90488181-90488200 MsG0780041399.01.T01:three_prime_UTR 40.0%
AAAGCCACAGAGCAGAATCA+GGG - Chr7:90487978-90487997 None:intergenic 45.0%
ACCTCCAACTTCTCTTCTGA+AGG - Chr7:90487594-90487613 None:intergenic 45.0%
ACCTTCAGAAGAGAAGTTGG+AGG + Chr7:90487590-90487609 MsG0780041399.01.T01:CDS 45.0%
CATCAGTATCTATCGTGCCT+TGG - Chr7:90487275-90487294 None:intergenic 45.0%
CTCGTTGAAAACAACCCTGT+TGG + Chr7:90487060-90487079 MsG0780041399.01.T01:CDS 45.0%
GCTATCTGCTAATCTCTCAG+TGG - Chr7:90487532-90487551 None:intergenic 45.0%
GGGCAGACTGAAACTTCAAA+TGG + Chr7:90487711-90487730 MsG0780041399.01.T01:CDS 45.0%
GTTTCATCTTGTACCTGAGC+TGG + Chr7:90487326-90487345 MsG0780041399.01.T01:CDS 45.0%
TGTTGTTCCAGGATCAGAAG+TGG - Chr7:90487868-90487887 None:intergenic 45.0%
! CGACATTTTTGTCCTTGCGA+TGG - Chr7:90487464-90487483 None:intergenic 45.0%
! GCTGAATTCCATTGGCTGAA+TGG + Chr7:90488161-90488180 MsG0780041399.01.T01:three_prime_UTR 45.0%
! TCGGAAGCAGAGAGAACTTT+TGG + Chr7:90487368-90487387 MsG0780041399.01.T01:CDS 45.0%
!! CAACAGGGTTGTTTTCAACG+AGG - Chr7:90487062-90487081 None:intergenic 45.0%
!! GAAGTTGGAGGTGCTATCAA+AGG + Chr7:90487602-90487621 MsG0780041399.01.T01:CDS 45.0%
!! GCTCTGTGGCTTTGAAAATC+AGG + Chr7:90487985-90488004 MsG0780041399.01.T01:three_prime_UTR 45.0%
!! GGGTTGTTTTCAACGAGGTT+TGG - Chr7:90487057-90487076 None:intergenic 45.0%
AAGCCACAGAGCAGAATCAG+GGG - Chr7:90487977-90487996 None:intergenic 50.0%
ACATTCTCCACATTCAGCGG+AGG - Chr7:90487153-90487172 None:intergenic 50.0%
ACTTGTGCAGCAGAAACTGG+AGG - Chr7:90487105-90487124 None:intergenic 50.0%
CAAAATAAGGAGGATGGGGG+TGG + Chr7:90487747-90487766 MsG0780041399.01.T01:CDS 50.0%
CAAAGCCACAGAGCAGAATC+AGG - Chr7:90487979-90487998 None:intergenic 50.0%
CAAGTACAGCAAGCTGGCAT+GGG + Chr7:90488117-90488136 MsG0780041399.01.T01:three_prime_UTR 50.0%
CTCACTTGTGCAGCAGAAAC+TGG - Chr7:90487108-90487127 None:intergenic 50.0%
GCTCATGGAAAACTACCTGC+TGG + Chr7:90486979-90486998 MsG0780041399.01.T01:CDS 50.0%
GCTGCACATAGAACTGCTCA+TGG + Chr7:90486964-90486983 MsG0780041399.01.T01:CDS 50.0%
TCAAGGACCACTTCTGATCC+TGG + Chr7:90487858-90487877 MsG0780041399.01.T01:CDS 50.0%
TCAAGTACAGCAAGCTGGCA+TGG + Chr7:90488116-90488135 MsG0780041399.01.T01:three_prime_UTR 50.0%
TCAGTCTGCCAACAAGTCCT+TGG + Chr7:90487173-90487192 MsG0780041399.01.T01:CDS 50.0%
TCGAAGGACACACGTGACAA+TGG + Chr7:90487006-90487025 MsG0780041399.01.T01:CDS 50.0%
TTGTCACGTGTGTCCTTCGA+TGG - Chr7:90487006-90487025 None:intergenic 50.0%
TTTCGCCAAACACCTCGTAC+AGG - Chr7:90487933-90487952 None:intergenic 50.0%
! GTACGAGGTGTTTGGCGAAA+GGG + Chr7:90487933-90487952 MsG0780041399.01.T01:CDS 50.0%
! TACGAGGTGTTTGGCGAAAG+GGG + Chr7:90487934-90487953 MsG0780041399.01.T01:CDS 50.0%
! TGTACGAGGTGTTTGGCGAA+AGG + Chr7:90487932-90487951 MsG0780041399.01.T01:CDS 50.0%
!! CCTTGGTGATGGTTCTGCTT+CGG + Chr7:90487815-90487834 MsG0780041399.01.T01:CDS 50.0%
AAGTTCCTCAGAGTGCGCCT+TGG + Chr7:90487798-90487817 MsG0780041399.01.T01:CDS 55.0%
AATAAGGAGGATGGGGGTGG+TGG + Chr7:90487750-90487769 MsG0780041399.01.T01:CDS 55.0%
ACTACCTGCTGGTCCATCGA+AGG + Chr7:90486990-90487009 MsG0780041399.01.T01:CDS 55.0%
ATAAGGAGGATGGGGGTGGT+GGG + Chr7:90487751-90487770 MsG0780041399.01.T01:CDS 55.0%
CAAGACTATGCCCGGATGCT+CGG + Chr7:90487349-90487368 MsG0780041399.01.T01:CDS 55.0%
CCGAAGCAGAACCATCACCA+AGG - Chr7:90487818-90487837 None:intergenic 55.0%
CTTCCCCTGATTCTGCTCTG+TGG + Chr7:90487971-90487990 MsG0780041399.01.T01:exon 55.0%
GGTTGTACAGGTCCACGACT+TGG - Chr7:90486844-90486863 None:intergenic 55.0%
TCTCTCTGCTTCCGAGCATC+CGG - Chr7:90487363-90487382 None:intergenic 55.0%
TGAGCTGGCAAGACTATGCC+CGG + Chr7:90487341-90487360 MsG0780041399.01.T01:CDS 55.0%
! AAGGCGCACTCTGAGGAACT+TGG - Chr7:90487799-90487818 None:intergenic 55.0%
! ACGAGGTGTTTGGCGAAAGG+GGG + Chr7:90487935-90487954 MsG0780041399.01.T01:CDS 55.0%
! GGTGCTTATCGCACCGACAA+AGG + Chr7:90487624-90487643 MsG0780041399.01.T01:CDS 55.0%
! GTGGACTGTGTGCAGCAGTT+TGG + Chr7:90487300-90487319 MsG0780041399.01.T01:CDS 55.0%
!! TCCACGACTTGGTACAGACC+AGG - Chr7:90486833-90486852 None:intergenic 55.0%
CATCACCAAGGCGCACTCTG+AGG - Chr7:90487806-90487825 None:intergenic 60.0%
CTCAGAGTGCGCCTTGGTGA+TGG + Chr7:90487804-90487823 MsG0780041399.01.T01:CDS 60.0%
CTCTCTGCTTCCGAGCATCC+GGG - Chr7:90487362-90487381 None:intergenic 60.0%
GCCATGCCGACGTAAACGTG+CGG - Chr7:90486776-90486795 None:intergenic 60.0%
GCCTGGTCTGTACCAAGTCG+TGG + Chr7:90486829-90486848 MsG0780041399.01.T01:CDS 60.0%
GTGTCCTTCGATGGACCAGC+AGG - Chr7:90486997-90487016 None:intergenic 60.0%
TAGCCAGCCTCCGCTGAATG+TGG + Chr7:90487143-90487162 MsG0780041399.01.T01:CDS 60.0%
TCTCCACATTCAGCGGAGGC+TGG - Chr7:90487149-90487168 None:intergenic 60.0%
! AGCGGAGGCTGGCTACTTGT+AGG - Chr7:90487138-90487157 None:intergenic 60.0%
! CGAGGTGTTTGGCGAAAGGG+GGG + Chr7:90487936-90487955 MsG0780041399.01.T01:CDS 60.0%
! GGCTGCCTGTACGAGGTGTT+TGG + Chr7:90487925-90487944 MsG0780041399.01.T01:CDS 60.0%
! GGGCATAGTCTTGCCAGCTC+AGG - Chr7:90487342-90487361 None:intergenic 60.0%
CAGCGCTAGCACCCATCGCA+AGG + Chr7:90487449-90487468 MsG0780041399.01.T01:CDS 65.0%
GCCGCACGTTTACGTCGGCA+TGG + Chr7:90486772-90486791 MsG0780041399.01.T01:CDS 65.0%
GGAGTTGGGCTGCCTGTACG+AGG + Chr7:90487918-90487937 MsG0780041399.01.T01:CDS 65.0%
GGTGTTTGGCGAAAGGGGGG+AGG + Chr7:90487939-90487958 MsG0780041399.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 90486769 90488458 90486769 ID=MsG0780041399.01;Name=MsG0780041399.01
Chr7 mRNA 90486769 90488458 90486769 ID=MsG0780041399.01.T01;Parent=MsG0780041399.01;Name=MsG0780041399.01.T01;_AED=0.32;_eAED=0.32;_QI=0|1|1|1|0.83|0.85|7|478|403
Chr7 exon 90486769 90488458 90486769 ID=MsG0780041399.01.T01:exon:3783;Parent=MsG0780041399.01.T01
Chr7 CDS 90486769 90487980 90486769 ID=MsG0780041399.01.T01:cds;Parent=MsG0780041399.01.T01
Chr7 three_prime_UTR 90487981 90488458 90487981 ID=MsG0780041399.01.T01:three_prime_utr;Parent=MsG0780041399.01.T01
Gene Sequence

>MsG0780041399.01.T01

ATGGCCGCACGTTTACGTCGGCATGGCAACAGAAATGTATCTGTTATTAATTCTGGAAATGCCTGGTCTGTACCAAGTCGTGGACCTGTACAACCTTCGCAATCTAAAAAGACAACAAAGTCTCAAAATTCTGGCCAGATGAAGACAGTAATTAACAGTGGACTTCCAGCATCAAGTTTTGCTAATTCTATTCAAGCTGCACATAGAACTGCTCATGGAAAACTACCTGCTGGTCCATCGAAGGACACACGTGACAATGGAAAAATCGTTCACTCTGCATCAGCTCCAAACCTCGTTGAAAACAACCCTGTTGGAGTTTCAATTTCTGATTTTCCTCCAGTTTCTGCTGCACAAGTGAGCAAGTTACCTACAAGTAGCCAGCCTCCGCTGAATGTGGAGAATGTTCAGTCTGCCAACAAGTCCTTGGTTGAAAAGATTCGTAGTGCGCTTAATTTTGACGAAGATAGATATACTATATTTAAAGACATATCTGCTCAATATCGCCAAGGCACGATAGATACTGATGCATATGTGGACTGTGTGCAGCAGTTTGGCTTGTTTCATCTTGTACCTGAGCTGGCAAGACTATGCCCGGATGCTCGGAAGCAGAGAGAACTTTTGGAGTCTTACAATGCTGGTTTGCAAAGAAACACTTTCCAAGAAAATGACGGGGTTTATGGCAGCGCTAGCACCCATCGCAAGGACAAAAATGTCGACAAGAAAGGTAAAGGTAAGTCATTAGATGTTAGGCGGAGTAACTCCACTGAGAGATTAGCAGATAGCTTTTTAAGCACTGTTCATCAACTACAGTCAAGTTATAAACCTTCAGAAGAGAAGTTGGAGGTGCTATCAAAGGGTGCTTATCGCACCGACAAAGGTAAATTAAAAATTGAGCCGCAGATTCAAACAAACTCTAGCAGTCAACATAAGACTAAGCTTGGTGGGCAGACTGAAACTTCAAATGGCAGTTTATCTAATCAAAATAAGGAGGATGGGGGTGGTGGGAACAAGCAACGCAAGAAAGCTTCCAAGTTCCTCAGAGTGCGCCTTGGTGATGGTTCTGCTTCGGCCCTTCTAGATCTTGAAAACTCAAGGACCACTTCTGATCCTGGAACAACAGACAGTTTAAATGGTAACAATAATGATTCTGGAGTTGGGCTGCCTGTACGAGGTGTTTGGCGAAAGGGGGGAGGTCAAAAACTCTTCCCCTGA

Protein sequence

>MsG0780041399.01.T01

MAARLRRHGNRNVSVINSGNAWSVPSRGPVQPSQSKKTTKSQNSGQMKTVINSGLPASSFANSIQAAHRTAHGKLPAGPSKDTRDNGKIVHSASAPNLVENNPVGVSISDFPPVSAAQVSKLPTSSQPPLNVENVQSANKSLVEKIRSALNFDEDRYTIFKDISAQYRQGTIDTDAYVDCVQQFGLFHLVPELARLCPDARKQRELLESYNAGLQRNTFQENDGVYGSASTHRKDKNVDKKGKGKSLDVRRSNSTERLADSFLSTVHQLQSSYKPSEEKLEVLSKGAYRTDKGKLKIEPQIQTNSSSQHKTKLGGQTETSNGSLSNQNKEDGGGGNKQRKKASKFLRVRLGDGSASALLDLENSRTTSDPGTTDSLNGNNNDSGVGLPVRGVWRKGGGQKLFP*