AlfalfaGEDB | MsG0880043163.01

M. sativa cultivar ZhongmuNo.1 / MsG0880043163.01

KEGG: K13106
GO: -
PFAM: PF09736

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043163.01.T01	XP_013444831.2	95.489	532	23	1	1	532	1	531	0	983

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043163.01.T01	Q4QQU1	28.722	665	301	21	5	532	8	636	7.08E-38	150

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043163.01.T01	A0A396GEX1	95.489	532	23	1	1	532	1	531	0.0	983

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0880043163.01	0.808575	2.895204e-50	1.661323e-47
MsG0080047912.01	MsG0880043163.01	0.822934	1.816404e-53	1.541948e-50
MsG0080048197.01	MsG0880043163.01	0.804590	2.008469e-49	1.039621e-46
MsG0080048383.01	MsG0880043163.01	0.839002	2.055331e-57	2.800657e-54
MsG0080048687.01	MsG0880043163.01	0.801817	7.528750e-49	3.630099e-46
MsG0080048830.01	MsG0880043163.01	0.810029	1.412507e-50	8.423943e-48
MsG0080048843.01	MsG0880043163.01	0.878085	3.736136e-69	1.924538e-65
MsG0080048964.01	MsG0880043163.01	0.821105	4.817321e-53	3.883260e-50
MsG0080048968.01	MsG0880043163.01	0.878381	2.941878e-69	1.532720e-65
MsG0080049135.01	MsG0880043163.01	0.814723	1.332590e-51	9.010722e-49

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PPI

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Gene1	Gene2	Type
MsG0580024353.01	MsG0880043163.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043163.01.T01	MTR_8g030840	95.301	532	24	1	1	532	1	531	0.0	979
MsG0880043163.01.T01	MTR_8g446970	92.857	266	18	1	78	343	1	265	3.83e-170	481
MsG0880043163.01.T01	MTR_4g081725	52.000	100	26	2	265	364	1	78	6.11e-15	70.5
MsG0880043163.01.T01	MTR_4g081620	52.381	84	29	3	357	437	5	80	1.85e-12	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043163.01.T01	AT1G31870	53.265	582	198	18	2	532	3	561	6.44e-168	487
MsG0880043163.01.T01	AT1G31870	53.265	582	198	18	2	532	3	561	6.44e-168	487

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Find 176 sgRNAs with CRISPR-Local

Find 399 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCAACCACAACCAAC+TGG	0.460869	8:-20005882	MsG0880043163.01.T01:CDS
AAAAGATTGTGCAATGGGAA+AGG	0.552791	8:-20000610	MsG0880043163.01.T01:three_prime_UTR
AAAATATGACACTTCTGACT+TGG	0.548593	8:-20005185	MsG0880043163.01.T01:CDS
AAACCGGTATGGGATAAGGC+CGG	0.531807	8:-20000998	MsG0880043163.01.T01:CDS
AAAGGAACTAGAAGTTGAGA+AGG	0.540761	8:-20002132	MsG0880043163.01.T01:CDS
AAAGGAAGGATGATTTGTTG+AGG	0.606723	8:-20004871	MsG0880043163.01.T01:intron
AACAGGTTTAATTTCTGGTA+AGG	0.424018	8:-20004918	MsG0880043163.01.T01:CDS
AACCGGTATGGGATAAGGCC+GGG	0.528901	8:-20000997	MsG0880043163.01.T01:CDS
AACGTGACTCACAACATTCT+GGG	0.432084	8:-20005411	MsG0880043163.01.T01:CDS
AACTCCTTTGAATTCTTCCT+TGG	0.381872	8:+20004971	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATATGACACTTCTGACT+TGG	-	Chr8:20001763-20001782	MsG0880043163.01.T01:intron	30.0%
AAAATTTACCGAGTGCAAAT+TGG	+	Chr8:20005058-20005077	None:intergenic	30.0%
AAACCATTAGAGAGAAAGTT+GGG	+	Chr8:20004375-20004394	None:intergenic	30.0%
AACCTGAAGATATTAAGTAG+AGG	-	Chr8:20002843-20002862	MsG0880043163.01.T01:intron	30.0%
AAGACAAAGAAGCTTATCTT+TGG	-	Chr8:20006164-20006183	MsG0880043163.01.T01:intron	30.0%
AAGATATTCCAAATCATAGC+TGG	-	Chr8:20005901-20005920	MsG0880043163.01.T01:CDS	30.0%
AATGGGATCTAACTCATTAA+AGG	-	Chr8:20000978-20000997	MsG0880043163.01.T01:CDS	30.0%
ACTTCAACTTCTAATAGAAC+GGG	-	Chr8:20001458-20001477	MsG0880043163.01.T01:intron	30.0%
ATCACTTATGCCATAGAAAT+AGG	-	Chr8:20000750-20000769	MsG0880043163.01.T01:exon	30.0%
ATCTGTTTAAGTCTGCATAA+AGG	+	Chr8:20002932-20002951	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	20000435	20006535	20000435	ID=MsG0880043163.01;Name=MsG0880043163.01
Chr8	mRNA	20000435	20006535	20000435	ID=MsG0880043163.01.T01;Parent=MsG0880043163.01;Name=MsG0880043163.01.T01;_AED=0.38;_eAED=0.38;_QI=177\|1\|1\|1\|0.87\|0.77\|9\|331\|532
Chr8	exon	20000435	20000851	20000435	ID=MsG0880043163.01.T01:exon:5319;Parent=MsG0880043163.01.T01
Chr8	exon	20000965	20001145	20000965	ID=MsG0880043163.01.T01:exon:5318;Parent=MsG0880043163.01.T01
Chr8	exon	20001245	20001317	20001245	ID=MsG0880043163.01.T01:exon:5317;Parent=MsG0880043163.01.T01
Chr8	exon	20002110	20002213	20002110	ID=MsG0880043163.01.T01:exon:5316;Parent=MsG0880043163.01.T01
Chr8	exon	20003464	20003525	20003464	ID=MsG0880043163.01.T01:exon:5315;Parent=MsG0880043163.01.T01
Chr8	exon	20003966	20004030	20003966	ID=MsG0880043163.01.T01:exon:5314;Parent=MsG0880043163.01.T01
Chr8	exon	20004872	20005712	20004872	ID=MsG0880043163.01.T01:exon:5313;Parent=MsG0880043163.01.T01
Chr8	exon	20005805	20006033	20005805	ID=MsG0880043163.01.T01:exon:5312;Parent=MsG0880043163.01.T01
Chr8	exon	20006401	20006535	20006401	ID=MsG0880043163.01.T01:exon:5311;Parent=MsG0880043163.01.T01
Chr8	five_prime_UTR	20006401	20006535	20006401	ID=MsG0880043163.01.T01:five_prime_utr;Parent=MsG0880043163.01.T01
Chr8	five_prime_UTR	20005992	20006033	20005992	ID=MsG0880043163.01.T01:five_prime_utr;Parent=MsG0880043163.01.T01
Chr8	CDS	20005805	20005991	20005805	ID=MsG0880043163.01.T01:cds;Parent=MsG0880043163.01.T01
Chr8	CDS	20004872	20005712	20004872	ID=MsG0880043163.01.T01:cds;Parent=MsG0880043163.01.T01
Chr8	CDS	20003966	20004030	20003966	ID=MsG0880043163.01.T01:cds;Parent=MsG0880043163.01.T01
Chr8	CDS	20003464	20003525	20003464	ID=MsG0880043163.01.T01:cds;Parent=MsG0880043163.01.T01
Chr8	CDS	20002110	20002213	20002110	ID=MsG0880043163.01.T01:cds;Parent=MsG0880043163.01.T01
Chr8	CDS	20001245	20001317	20001245	ID=MsG0880043163.01.T01:cds;Parent=MsG0880043163.01.T01
Chr8	CDS	20000965	20001145	20000965	ID=MsG0880043163.01.T01:cds;Parent=MsG0880043163.01.T01
Chr8	CDS	20000766	20000851	20000766	ID=MsG0880043163.01.T01:cds;Parent=MsG0880043163.01.T01
Chr8	three_prime_UTR	20000435	20000765	20000435	ID=MsG0880043163.01.T01:three_prime_utr;Parent=MsG0880043163.01.T01

Gene Sequence

>MsG0880043163.01.T01

ATGGGATCTAACTCATTAAAGGATTATCTAAAAAAATATGTGAGTAACCCTGAAGATGACAAGAAAAACAAGAAGAAAAAGAAGAGGAAAACTCAACCACAACCAACTGGCTTGTTAGTTGTAGACGAAGATCCAACCTGGCAGAAGCCCGTAGATCTTGAAGAAGAAAACGATGACAAATTGTCAGATGAGGAGAAGCCGATAGTTGACGAAGACATTGAAGTAAAGCGTATGAAGAGGCTTGAGCAGCTGAAGGCTAGACGTGCTTATCATGATATATCTGAGGATGGAAGTGGTTGGGTTCCACTTTCAAATAATGATACATCTCCACCCCGTAAACAGACGGTTCGAAATGACACTCCTTCACCAGAACCACCTGAATTGAATACTTCAACTTCTAATAGAACGGGTGCTGATTTATCCCCTTCGCGGAGGCAGTTGAAACGCTATGACACTCCATCACCTGAACGTGACTCACAACATTCTGGGGGAGTGAATTCTGATTTATCTCCTCCTCGTAAACGCAGAGATCAGAGTGTTACAGCTGTAGCTTGTGAACCAAGGTCGTCTAAATCAAAATTTGAAGATAGTGATATGTCACCTCCTCGACGGAAACATGTTACTAATTCGAGTCCAGATATTTCCCCTCCTCGCAGTCGTAGTCATCAAACATCTGGATCCAATGGGAGAAAAAAATATGACACTTCTGACTTGGAAGATCTTTCTCCACCTAGACGGGGTCGTCATGATTCCCCCTCTCAAGATACTTTACATGGACAAGTGTCGTCTGATCTTTCACCCCCACGGAGACGCCAGCATAGTGTGGCAAGATCGAGTTTATCTGATGTTTCTCATCGTTCGGTGAAAGCTGTTTCACATCAATCTTTGGACAGTGACCTCTCTCCACCAAGGAAGAATTCAAAGGAGTTATCCATTCCAGCATCTGTTCATGAAAGAAAAACAGGTTTAATTTCTGGTAAGGATATCAGAGAAGAGATTGACAGAAAAAGGAAGGATGATTTGTTGAGACTTAAACAGATGGACCCTGTCATCAGTGGGCGCGGCGCTGAAGCTGTATATCGTGATAACAAAGGAGGACGCATTACCAAAGAGGAATATGTAAAGTCAAAACAGAAAGTAGACGATAAGCCCAAGGAGATTAAAATAGAATGGGGCAAGGGCCTTGCTCAAAAGCGGGAAGCTGAGGCTAAGCTAAAGGAACTAGAAGTTGAGAAGGAAAAGCCTTTTGCGCGGACCAGAGACGATCCTGAACTTGACAAGTTGATGAAGGAGAGGGTAAGATGGGGTGATCCTATGGCACATCTAGTAAAGAAAAAATATCCAGAGCCTGTTCTTCCAAACTTGGGGGATAGTGATAAAATGAGGGAATCTGGTTTTGTTGTTCCTCAAGATATTCCAAATCATAGCTGGTTGAAGAGAGGTTTAGAAGCTGCTCCAAACCGGTATGGGATAAGGCCGGGACGACACTGGGATGGTGTTGATCGTAGTAATGGGTTCGAGAAGGCATTGTTCAAGAGAACAAATGAGAGACAAGCTAAAGACAAAGAAGCTTATCTTTGGTCTGTGTCTGATATGTGA

Protein sequence

>MsG0880043163.01.T01

MGSNSLKDYLKKYVSNPEDDKKNKKKKKRKTQPQPTGLLVVDEDPTWQKPVDLEEENDDKLSDEEKPIVDEDIEVKRMKRLEQLKARRAYHDISEDGSGWVPLSNNDTSPPRKQTVRNDTPSPEPPELNTSTSNRTGADLSPSRRQLKRYDTPSPERDSQHSGGVNSDLSPPRKRRDQSVTAVACEPRSSKSKFEDSDMSPPRRKHVTNSSPDISPPRSRSHQTSGSNGRKKYDTSDLEDLSPPRRGRHDSPSQDTLHGQVSSDLSPPRRRQHSVARSSLSDVSHRSVKAVSHQSLDSDLSPPRKNSKELSIPASVHERKTGLISGKDIREEIDRKRKDDLLRLKQMDPVISGRGAEAVYRDNKGGRITKEEYVKSKQKVDDKPKEIKIEWGKGLAQKREAEAKLKELEVEKEKPFARTRDDPELDKLMKERVRWGDPMAHLVKKKYPEPVLPNLGDSDKMRESGFVVPQDIPNHSWLKRGLEAAPNRYGIRPGRHWDGVDRSNGFEKALFKRTNERQAKDKEAYLWSVSDM*