AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380011729.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011729.01.T01 MTR_3g009740 84.870 575 53 2 1 541 1 575 0.0 950
MsG0380011729.01.T01 MTR_8g070940 45.693 267 130 6 278 541 95 349 1.97e-56 193
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011729.01.T01 AT4G26455 32.179 491 246 15 62 541 75 489 2.85e-46 169
MsG0380011729.01.T01 AT5G56210 28.916 498 282 16 75 541 53 509 1.78e-29 122
MsG0380011729.01.T01 AT3G13360 27.341 534 262 17 37 541 23 459 4.65e-29 120
MsG0380011729.01.T01 AT3G13360 27.341 534 262 17 37 541 82 518 7.55e-29 120

Find 133 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACAACAACCCCAGAATTT+TGG 0.122979 3:-4203026 None:intergenic
TTTCAATTTGATGGCAATTT+TGG 0.164092 3:+4199704 MsG0380011729.01.T01:CDS
TATCAATCTCCCTGAATTTC+TGG 0.176921 3:-4202327 None:intergenic
AAGGGTTCTGATGAGAAATT+AGG 0.189886 3:+4199680 MsG0380011729.01.T01:CDS
AAATTACAGTGAATTATTTA+AGG 0.190432 3:-4203220 None:intergenic
TGATGTTAATCTTGTTCTTT+TGG 0.219585 3:+4202983 MsG0380011729.01.T01:CDS
AATTCACTGTAATTTGAGTT+TGG 0.245002 3:+4203228 MsG0380011729.01.T01:three_prime_UTR
TTGAAATTGAAATATGGATT+TGG 0.250648 3:+4199607 None:intergenic
TCACAGTTATCCCAAAATTC+TGG 0.258625 3:+4203015 MsG0380011729.01.T01:CDS
GAAACAACATGTAAACCTTT+TGG 0.279724 3:+4202516 MsG0380011729.01.T01:CDS
TTGCAGAAGTCCAGAAATTC+AGG 0.282661 3:+4202317 MsG0380011729.01.T01:intron
AGAAGGAATTGTTGCTGAAT+TGG 0.284953 3:+4199742 MsG0380011729.01.T01:CDS
GTGTTGGCAGATTCTTCTTT+AGG 0.285615 3:-4202628 None:intergenic
AGATTTACAATTTACATTAT+TGG 0.289460 3:+4202765 MsG0380011729.01.T01:CDS
TGAAGAAATGGAAGAGAATT+AGG 0.289879 3:+4199816 MsG0380011729.01.T01:CDS
ATTCACTGTAATTTGAGTTT+GGG 0.317485 3:+4203229 MsG0380011729.01.T01:three_prime_UTR
GAATTAGGAGGAATGTTGTT+AGG 0.319758 3:+4199831 MsG0380011729.01.T01:CDS
AACCTTCTTCAAGTGCTTCC+TGG 0.322107 3:-4200592 None:intergenic
GATGGGTCTTCGAGCGCGTT+TGG 0.325703 3:+4199962 MsG0380011729.01.T01:CDS
TGAAATTGAAATATGGATTT+GGG 0.329850 3:+4199608 None:intergenic
TTCTGATGGGCATGCAATCC+GGG 0.332805 3:+4199997 MsG0380011729.01.T01:CDS
GCTGGTTATGGCAACGAAAA+TGG 0.341150 3:+4200437 MsG0380011729.01.T01:CDS
TTTCTGATGGGCATGCAATC+CGG 0.344143 3:+4199996 MsG0380011729.01.T01:CDS
ACCCCTCTTCAAAACCTTAC+CGG 0.347847 3:-4199879 None:intergenic
CACTTAACTGAGTCGTCTTC+TGG 0.349970 3:-4202364 None:intergenic
GGTATCACTGCTGTTGATCT+TGG 0.353511 3:+4202403 MsG0380011729.01.T01:CDS
ATCCTTTGATCGAGTCTATC+AGG 0.353744 3:+4200555 MsG0380011729.01.T01:CDS
GGAACTTGAAGCAGCTTGAT+TGG 0.364131 3:-4202470 None:intergenic
CGAGTCTATCAGGAGCCTTC+AGG 0.370738 3:+4200565 MsG0380011729.01.T01:CDS
AAGAGGGGTTTATCTGGGTC+TGG 0.371412 3:+4199893 MsG0380011729.01.T01:CDS
GCAACAATTCCTTCTTGATC+TGG 0.373469 3:-4199734 None:intergenic
GAAGGAATTGTTGCTGAATT+GGG 0.375674 3:+4199743 MsG0380011729.01.T01:CDS
GAAGTGAATCACGATGAAAA+TGG 0.378652 3:+4199653 MsG0380011729.01.T01:CDS
AAATTAGGGTTTCAATTTGA+TGG 0.382765 3:+4199695 MsG0380011729.01.T01:CDS
CCATAACCAGCTTCATTCCT+TGG 0.386028 3:-4200425 None:intergenic
TGATGCAGAACTTGAAGGTT+GGG 0.388770 3:+4202740 MsG0380011729.01.T01:CDS
ATGGGTCTTCGAGCGCGTTT+GGG 0.392314 3:+4199963 MsG0380011729.01.T01:CDS
TGAAAATCTGCGGGGTGTTA+AGG 0.392736 3:+4199931 MsG0380011729.01.T01:CDS
TGCTTGCTACGAAGGATTCT+AGG 0.403279 3:+4202566 MsG0380011729.01.T01:CDS
CCAAGGAATGAAGCTGGTTA+TGG 0.405340 3:+4200425 MsG0380011729.01.T01:CDS
AAGGGGTTGGATTGAAGAAA+TGG 0.411286 3:+4199804 MsG0380011729.01.T01:CDS
CACAGTTATCCCAAAATTCT+GGG 0.411552 3:+4203016 MsG0380011729.01.T01:CDS
TCTAGATATGCAGTTGGATC+TGG 0.415064 3:+4200034 MsG0380011729.01.T01:CDS
TCAAGCTGCTTCAAGTTCCT+TGG 0.417796 3:+4202474 MsG0380011729.01.T01:CDS
TTTAGTGAACTCGGCTCAAA+AGG 0.417990 3:+4200180 MsG0380011729.01.T01:CDS
TTTAGTACAGTTACTAGTAA+TGG 0.427692 3:+4200331 MsG0380011729.01.T01:CDS
AGGGTTCTGATGAGAAATTA+GGG 0.427817 3:+4199681 MsG0380011729.01.T01:CDS
CAGGAGCCTTCAGGCTGTCC+AGG 0.431092 3:+4200574 MsG0380011729.01.T01:CDS
GATCATAGATGCGGAGAGTA+AGG 0.438137 3:+4202834 MsG0380011729.01.T01:CDS
GCTGCAGAAAAGAGTATGTA+AGG 0.439143 3:+4202933 MsG0380011729.01.T01:CDS
CAGATTCGAGATCCAACTAT+AGG 0.441179 3:+4200299 MsG0380011729.01.T01:intron
AATTAGGAGGAATGTTGTTA+GGG 0.443869 3:+4199832 MsG0380011729.01.T01:CDS
TCTAAAGGGGCACCAAGAAA+AGG 0.446044 3:+4199785 MsG0380011729.01.T01:CDS
CCTTTCTCATGCCTCACCTT+CGG 0.447954 3:-4200127 None:intergenic
CTAAAGGGGCACCAAGAAAA+GGG 0.449350 3:+4199786 MsG0380011729.01.T01:CDS
CCTCCAGCTTGCTTTCCAAA+AGG 0.451050 3:-4202531 None:intergenic
TGGTGAAGATGAAGATCTAC+AGG 0.463551 3:+4200457 MsG0380011729.01.T01:CDS
TGGTGATAGTTTAGTAATTG+AGG 0.464590 3:+4202900 MsG0380011729.01.T01:CDS
TCACGATGAAAATGGAATCA+AGG 0.466507 3:+4199661 MsG0380011729.01.T01:CDS
AGGAAGCTGTGAATTCTAAA+GGG 0.468369 3:+4199771 MsG0380011729.01.T01:CDS
AAAGACACCTTGCCTATAGT+TGG 0.470804 3:-4200311 None:intergenic
ATGAGAAAGGCCGTGGTAGT+AGG 0.471311 3:+4200140 MsG0380011729.01.T01:CDS
GATCTTCAGCACTTGTAGAC+TGG 0.475844 3:-4200535 None:intergenic
CTCTACTTCTTTATAACCTA+GGG 0.478091 3:-4202650 None:intergenic
TAAGGTGATGCAGAACTTGA+AGG 0.479356 3:+4202735 MsG0380011729.01.T01:CDS
GAGGAAGCTGTGAATTCTAA+AGG 0.479514 3:+4199770 MsG0380011729.01.T01:CDS
ACTCTACTTCTTTATAACCT+AGG 0.480486 3:-4202651 None:intergenic
AATTCGAGTGCTGATGAATC+CGG 0.484587 3:+4199860 MsG0380011729.01.T01:CDS
TTCTGCGGCAAATCAGTCTT+GGG 0.487223 3:+4200484 MsG0380011729.01.T01:CDS
AAATGACTGAGACGTACGTT+TGG 0.489898 3:+4203296 MsG0380011729.01.T01:three_prime_UTR
CTTGAAACAGCCTTGACTAC+TGG 0.491839 3:+4202598 MsG0380011729.01.T01:CDS
TATGGATTTGGGAAGTGAAT+CGG 0.504956 3:+4199619 None:intergenic
GTCCAGGAAGCACTTGAAGA+AGG 0.506986 3:+4200590 MsG0380011729.01.T01:CDS
AGAGGGGTTTATCTGGGTCT+GGG 0.510213 3:+4199894 MsG0380011729.01.T01:CDS
ATTCTGCGGCAAATCAGTCT+TGG 0.512363 3:+4200483 MsG0380011729.01.T01:CDS
TTCTTTATAACCTAGGGTGT+TGG 0.512371 3:-4202644 None:intergenic
CGTTACCTCCATCATAAACA+TGG 0.514459 3:-4200372 None:intergenic
GTGATGCAGAACTTGAAGGT+TGG 0.516204 3:+4202739 MsG0380011729.01.T01:CDS
TTCGAAGAATTTAGTGAACT+CGG 0.516442 3:+4200171 MsG0380011729.01.T01:CDS
GAAGAACAAAGCAGAAGAGT+TGG 0.517816 3:+4202867 MsG0380011729.01.T01:CDS
GCAAGGCGTGCTTGCTACGA+AGG 0.529878 3:+4202558 MsG0380011729.01.T01:CDS
TGTTGCTGAATTGGGTAGTG+AGG 0.530555 3:+4199751 MsG0380011729.01.T01:CDS
CACGATGAAAATGGAATCAA+GGG 0.532616 3:+4199662 MsG0380011729.01.T01:CDS
CCGAAGGTGAGGCATGAGAA+AGG 0.536005 3:+4200127 MsG0380011729.01.T01:CDS
GAAGAATCTGCCAACACCCT+AGG 0.548150 3:+4202634 MsG0380011729.01.T01:CDS
ACTAGTAATGGAAAACATAG+TGG 0.551305 3:+4200343 MsG0380011729.01.T01:CDS
TGCAGAAGTCCAGAAATTCA+GGG 0.553635 3:+4202318 MsG0380011729.01.T01:intron
ATTTCACCAAGGAATGAAGC+TGG 0.554994 3:+4200419 MsG0380011729.01.T01:CDS
AAGTGTAGCAGTGCATCTGC+TGG 0.556258 3:+4202382 MsG0380011729.01.T01:CDS
AGATTAACATCATGAACTGT+AGG 0.559173 3:-4202972 None:intergenic
CTTCGGCTCACTAGCTGCAG+TGG 0.566787 3:-4200110 None:intergenic
AATTTGTATTCCTACTACCA+CGG 0.566898 3:-4200150 None:intergenic
GCATCACCTTAGCGATGGCT+AGG 0.570346 3:-4202723 None:intergenic
CACTGCAGCTAGTGAGCCGA+AGG 0.570950 3:+4200111 MsG0380011729.01.T01:CDS
GGTGTAAAACCAGATCAAGA+AGG 0.572427 3:+4199725 MsG0380011729.01.T01:CDS
GTGCTTCCTGGACAGCCTGA+AGG 0.572548 3:-4200580 None:intergenic
TAGGCAAAAGGTTGAAGCTG+AGG 0.572695 3:+4202693 MsG0380011729.01.T01:CDS
GTGAGGCATGAGAAAGGCCG+TGG 0.577436 3:+4200133 MsG0380011729.01.T01:CDS
TAGAATCTGTACTAGAACCC+CGG 0.580227 3:-4200015 None:intergenic
GAGTGCTGATGAATCCGGTA+AGG 0.582886 3:+4199865 MsG0380011729.01.T01:CDS
GAATTTGAGTGAAAATCTGC+GGG 0.583607 3:+4199922 MsG0380011729.01.T01:CDS
AGAAATGGAAGAGAATTAGG+AGG 0.592844 3:+4199819 MsG0380011729.01.T01:CDS
GGGGCACCAAGAAAAGGGGT+TGG 0.594012 3:+4199791 MsG0380011729.01.T01:CDS
AGGAAACTTACCAGTAGTCA+AGG 0.594780 3:-4202608 None:intergenic
CACAAAATGATAATAGAACA+AGG 0.596347 3:-4203192 None:intergenic
ACAGATTCTAGATATGCAGT+TGG 0.598937 3:+4200028 MsG0380011729.01.T01:CDS
CTCCTGATAGACTCGATCAA+AGG 0.598987 3:-4200557 None:intergenic
TCTGATGGGCATGCAATCCG+GGG 0.601884 3:+4199998 MsG0380011729.01.T01:CDS
CGAATTTGAGTGAAAATCTG+CGG 0.603111 3:+4199921 MsG0380011729.01.T01:CDS
AGAAGTAGAGTACGAGATCG+AGG 0.604863 3:+4202663 MsG0380011729.01.T01:CDS
GATGCAGAACTTGAAGGTTG+GGG 0.607398 3:+4202741 MsG0380011729.01.T01:CDS
GGATTTGGGAAGTGAATCGG+TGG 0.608119 3:+4199622 MsG0380011729.01.T01:CDS
ACTGTCCGAAAATCAAGCAC+AGG 0.613967 3:+4202801 MsG0380011729.01.T01:CDS
GTTACCTCCATCATAAACAT+GGG 0.616232 3:-4200371 None:intergenic
CAGCTAGTGAGCCGAAGGTG+AGG 0.618013 3:+4200116 MsG0380011729.01.T01:CDS
ACTCGATATCTGAAACTCCA+AGG 0.620943 3:-4202491 None:intergenic
ATTCGGAGAATAGTGAGGAT+CGG 0.621517 3:+4200074 MsG0380011729.01.T01:CDS
AGCAAGCTGGAGGAGTTGCA+AGG 0.625840 3:+4202541 MsG0380011729.01.T01:CDS
TCGAGATCCAACTATAGGCA+AGG 0.632294 3:+4200304 MsG0380011729.01.T01:CDS
TGAATACCTAGCCATCGCTA+AGG 0.643417 3:+4202717 MsG0380011729.01.T01:CDS
AGGGTAAGTTCTATGTAACA+AGG 0.645891 3:-4203133 None:intergenic
TAAAGGGGCACCAAGAAAAG+GGG 0.646182 3:+4199787 MsG0380011729.01.T01:CDS
GTTCTGCATCACCTTAGCGA+TGG 0.647863 3:-4202728 None:intergenic
ACAGTTATCCCAAAATTCTG+GGG 0.661233 3:+4203017 MsG0380011729.01.T01:CDS
TTACCTCCATCATAAACATG+GGG 0.669072 3:-4200370 None:intergenic
TACTAATGAACATTTCACCA+AGG 0.671708 3:+4200408 MsG0380011729.01.T01:CDS
GGAAGCTGTGAATTCTAAAG+GGG 0.673317 3:+4199772 MsG0380011729.01.T01:CDS
GACTGATTCGGAGAATAGTG+AGG 0.677186 3:+4200069 MsG0380011729.01.T01:CDS
TCTCAACAAGATCATAGATG+CGG 0.693153 3:+4202825 MsG0380011729.01.T01:CDS
GTTTATGATGGAGGTAACGA+TGG 0.695425 3:+4200376 MsG0380011729.01.T01:CDS
AGATCTACAGGAGAATTCTG+CGG 0.721794 3:+4200469 MsG0380011729.01.T01:CDS
TACCTCCATCATAAACATGG+GGG 0.749426 3:-4200369 None:intergenic
AATTTGAGTGAAAATCTGCG+GGG 0.860716 3:+4199923 MsG0380011729.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATTAAAAATGAAATAATA+TGG - Chr3:4201512-4201531 None:intergenic 10.0%
!! ATAAAGTAATATGTATTATA+AGG - Chr3:4201150-4201169 None:intergenic 10.0%
!! AAATTACAGTGAATTATTTA+AGG - Chr3:4203223-4203242 None:intergenic 15.0%
!! AATACTTTCATAAAACATAA+TGG - Chr3:4201660-4201679 None:intergenic 15.0%
!! AGATTTACAATTTACATTAT+TGG + Chr3:4202765-4202784 MsG0380011729.01.T01:CDS 15.0%
!! GTATGAATCATATATATAAT+TGG + Chr3:4201998-4202017 MsG0380011729.01.T01:intron 15.0%
!! GTTAATTAGTTATGTTAATA+AGG - Chr3:4201097-4201116 None:intergenic 15.0%
!! TATAAAATAAGAAGGTTATT+AGG - Chr3:4200884-4200903 None:intergenic 15.0%
!!! AGTTTTAAATATAGTATTGT+TGG - Chr3:4201292-4201311 None:intergenic 15.0%
!!! GTGATATGTTTTATTTTTAT+GGG + Chr3:4200630-4200649 MsG0380011729.01.T01:intron 15.0%
!!! TGTGATATGTTTTATTTTTA+TGG + Chr3:4200629-4200648 MsG0380011729.01.T01:intron 15.0%
!! AATAAAACATATCACACAAT+AGG - Chr3:4200625-4200644 None:intergenic 20.0%
!! GAATTATATGTTTAGAGAAA+AGG + Chr3:4201788-4201807 MsG0380011729.01.T01:intron 20.0%
!! TAACACGATATAAAATAAGA+AGG - Chr3:4200892-4200911 None:intergenic 20.0%
!!! ATTTTGCATATTATTTCTTG+AGG + Chr3:4201453-4201472 MsG0380011729.01.T01:intron 20.0%
!!! TATCAGTGAATATTTTGAAT+TGG - Chr3:4201074-4201093 None:intergenic 20.0%
!!! TATTTCATCTTTTCTACAAT+AGG - Chr3:4201824-4201843 None:intergenic 20.0%
!!! TTTTTTCTTGTAGCTTTTTA+CGG - Chr3:4201698-4201717 None:intergenic 20.0%
! AAATTAGGGTTTCAATTTGA+TGG + Chr3:4199695-4199714 MsG0380011729.01.T01:CDS 25.0%
! AAGTCCAATATCTTTCTTAA+TGG - Chr3:4201965-4201984 None:intergenic 25.0%
! AATAAGTGCAAAATAGCATA+TGG - Chr3:4202107-4202126 None:intergenic 25.0%
! AATGAAATAATATGGCCAAA+TGG - Chr3:4201504-4201523 None:intergenic 25.0%
! AGATGAAATAATCTTGTTCT+TGG + Chr3:4201834-4201853 MsG0380011729.01.T01:intron 25.0%
! ATATATGTTGCATTTACTCA+AGG - Chr3:4200724-4200743 None:intergenic 25.0%
! ATTAAACAGAACCAAATACA+TGG - Chr3:4200922-4200941 None:intergenic 25.0%
! CAAACCATTAAGAAAGATAT+TGG + Chr3:4201958-4201977 MsG0380011729.01.T01:intron 25.0%
! CACAAAATGATAATAGAACA+AGG - Chr3:4203195-4203214 None:intergenic 25.0%
! GTGGTTAATATAATGTCAAA+TGG + Chr3:4201340-4201359 MsG0380011729.01.T01:intron 25.0%
! TTTAGTACAGTTACTAGTAA+TGG + Chr3:4200331-4200350 MsG0380011729.01.T01:CDS 25.0%
!! AACCTAGTATATAATTTGTC+TGG + Chr3:4200841-4200860 MsG0380011729.01.T01:intron 25.0%
!! AATTCACTGTAATTTGAGTT+TGG + Chr3:4203228-4203247 MsG0380011729.01.T01:three_prime_UTR 25.0%
!! ATTCACTGTAATTTGAGTTT+GGG + Chr3:4203229-4203248 MsG0380011729.01.T01:three_prime_UTR 25.0%
!! ATTGGACTTGAATGATTTTT+AGG + Chr3:4201976-4201995 MsG0380011729.01.T01:intron 25.0%
!! CAAAATGAAACTAATTTTGC+AGG - Chr3:4203061-4203080 None:intergenic 25.0%
!! TGATGTTAATCTTGTTCTTT+TGG + Chr3:4202983-4203002 MsG0380011729.01.T01:CDS 25.0%
!!! AAAGTATTGAACTGAATGTT+GGG + Chr3:4201672-4201691 MsG0380011729.01.T01:intron 25.0%
!!! TTTCAATTTGATGGCAATTT+TGG + Chr3:4199704-4199723 MsG0380011729.01.T01:CDS 25.0%
AAACATATCACACAATAGGA+CGG - Chr3:4200621-4200640 None:intergenic 30.0%
AATTAGGAGGAATGTTGTTA+GGG + Chr3:4199832-4199851 MsG0380011729.01.T01:CDS 30.0%
AATTTGTATTCCTACTACCA+CGG - Chr3:4200153-4200172 None:intergenic 30.0%
ACTCTACTTCTTTATAACCT+AGG - Chr3:4202654-4202673 None:intergenic 30.0%
AGATTAACATCATGAACTGT+AGG - Chr3:4202975-4202994 None:intergenic 30.0%
AGCCAGACAAATTATATACT+AGG - Chr3:4200846-4200865 None:intergenic 30.0%
ATATGTTTAGAGAAAAGGCA+GGG + Chr3:4201793-4201812 MsG0380011729.01.T01:intron 30.0%
CTCTACTTCTTTATAACCTA+GGG - Chr3:4202653-4202672 None:intergenic 30.0%
GTGTTAAGGAAAAAAACGAT+GGG + Chr3:4199945-4199964 MsG0380011729.01.T01:CDS 30.0%
TACAAATTGGTTATCAGCAA+TGG - Chr3:4202290-4202309 None:intergenic 30.0%
TACTAATGAACATTTCACCA+AGG + Chr3:4200408-4200427 MsG0380011729.01.T01:CDS 30.0%
TATATGTTTAGAGAAAAGGC+AGG + Chr3:4201792-4201811 MsG0380011729.01.T01:intron 30.0%
TCTGTTTAATCAGTTTGGTT+TGG + Chr3:4200932-4200951 MsG0380011729.01.T01:intron 30.0%
TGAAATAATCTTGTTCTTGG+TGG + Chr3:4201837-4201856 MsG0380011729.01.T01:intron 30.0%
TGAAGAAATGGAAGAGAATT+AGG + Chr3:4199816-4199835 MsG0380011729.01.T01:CDS 30.0%
TGGTGATAGTTTAGTAATTG+AGG + Chr3:4202900-4202919 MsG0380011729.01.T01:CDS 30.0%
TTACTCAAGGATTATAACAC+CGG - Chr3:4200711-4200730 None:intergenic 30.0%
TTCGAAGAATTTAGTGAACT+CGG + Chr3:4200171-4200190 MsG0380011729.01.T01:CDS 30.0%
TTGTCAACAAACTGATGATA+AGG - Chr3:4200749-4200768 None:intergenic 30.0%
! ACTAGTAATGGAAAACATAG+TGG + Chr3:4200343-4200362 MsG0380011729.01.T01:CDS 30.0%
! GAAACAACATGTAAACCTTT+TGG + Chr3:4202516-4202535 MsG0380011729.01.T01:CDS 30.0%
! TCTTAATGGTTTGACTTTAC+TGG - Chr3:4201951-4201970 None:intergenic 30.0%
! TTATAAGGTATCTGTGAGTA+AGG - Chr3:4201135-4201154 None:intergenic 30.0%
! TTTAGAGCCTTAAGTTATGA+TGG + Chr3:4201199-4201218 MsG0380011729.01.T01:intron 30.0%
!! ATCATCAGTTTGTTGACAAT+TGG + Chr3:4200750-4200769 MsG0380011729.01.T01:intron 30.0%
!! GAAAGTATTGAACTGAATGT+TGG + Chr3:4201671-4201690 MsG0380011729.01.T01:intron 30.0%
!! TTGGTTCTGTTTAATCAGTT+TGG + Chr3:4200927-4200946 MsG0380011729.01.T01:intron 30.0%
!!! AGAACTTACCCTTCTTTTTT+AGG + Chr3:4203144-4203163 MsG0380011729.01.T01:three_prime_UTR 30.0%
!!! ATGAAGTTCTGTCTTTTTTC+TGG + Chr3:4202238-4202257 MsG0380011729.01.T01:intron 30.0%
!!! GAACTTACCCTTCTTTTTTA+GGG + Chr3:4203145-4203164 MsG0380011729.01.T01:three_prime_UTR 30.0%
!!! TTGTTCTCACTTTTTTCTTC+AGG - Chr3:4200515-4200534 None:intergenic 30.0%
AAGAAGGTTATTAGGCAGTT+AGG - Chr3:4200876-4200895 None:intergenic 35.0%
AATTGAGATTGTTGTGTTGC+CGG + Chr3:4200689-4200708 MsG0380011729.01.T01:intron 35.0%
AATTTGAGTGAAAATCTGCG+GGG + Chr3:4199923-4199942 MsG0380011729.01.T01:CDS 35.0%
ACAGAACCAAATACATGGTT+TGG - Chr3:4200917-4200936 None:intergenic 35.0%
ACAGATTCTAGATATGCAGT+TGG + Chr3:4200028-4200047 MsG0380011729.01.T01:CDS 35.0%
ACAGTTATCCCAAAATTCTG+GGG + Chr3:4203017-4203036 MsG0380011729.01.T01:CDS 35.0%
ACATGACTTGATCCAACAAT+AGG + Chr3:4202028-4202047 MsG0380011729.01.T01:intron 35.0%
AGAAATGGAAGAGAATTAGG+AGG + Chr3:4199819-4199838 MsG0380011729.01.T01:CDS 35.0%
AGAAGGAATTGTTGCTGAAT+TGG + Chr3:4199742-4199761 MsG0380011729.01.T01:CDS 35.0%
AGAAGGTTATTAGGCAGTTA+GGG - Chr3:4200875-4200894 None:intergenic 35.0%
AGATTATATTGCCACCTTAC+AGG - Chr3:4201007-4201026 None:intergenic 35.0%
AGGAAACAATGATGCAAAGT+AGG + Chr3:4202048-4202067 MsG0380011729.01.T01:intron 35.0%
AGGAAGCTGTGAATTCTAAA+GGG + Chr3:4199771-4199790 MsG0380011729.01.T01:CDS 35.0%
AGGGTAAGTTCTATGTAACA+AGG - Chr3:4203136-4203155 None:intergenic 35.0%
ATCATAAGATCCAAGTGAGA+TGG + Chr3:4201570-4201589 MsG0380011729.01.T01:intron 35.0%
ATCGTAGATGTAGATCAGAT+GGG + Chr3:4201895-4201914 MsG0380011729.01.T01:intron 35.0%
CAACAATCTCAATTGCAGAT+TGG - Chr3:4200683-4200702 None:intergenic 35.0%
CACAAATGAGAATACTGCAT+TGG + Chr3:4201729-4201748 MsG0380011729.01.T01:intron 35.0%
CACAGTTATCCCAAAATTCT+GGG + Chr3:4203016-4203035 MsG0380011729.01.T01:CDS 35.0%
CACGATGAAAATGGAATCAA+GGG + Chr3:4199662-4199681 MsG0380011729.01.T01:CDS 35.0%
CATGTAGAGAAATAAAGTGC+TGG - Chr3:4201391-4201410 None:intergenic 35.0%
CGAATTTGAGTGAAAATCTG+CGG + Chr3:4199921-4199940 MsG0380011729.01.T01:CDS 35.0%
GAAGAGTTGGAAAAATACTG+TGG + Chr3:4202880-4202899 MsG0380011729.01.T01:CDS 35.0%
GAAGGAATTGTTGCTGAATT+GGG + Chr3:4199743-4199762 MsG0380011729.01.T01:CDS 35.0%
GAAGTGAATCACGATGAAAA+TGG + Chr3:4199653-4199672 MsG0380011729.01.T01:CDS 35.0%
GAATTAGGAGGAATGTTGTT+AGG + Chr3:4199831-4199850 MsG0380011729.01.T01:CDS 35.0%
GAATTTGAGTGAAAATCTGC+GGG + Chr3:4199922-4199941 MsG0380011729.01.T01:CDS 35.0%
GCATCATTGTTTCCTATTGT+TGG - Chr3:4202043-4202062 None:intergenic 35.0%
GGAAAATTCTATTTCCAGCT+TGG + Chr3:4200273-4200292 MsG0380011729.01.T01:intron 35.0%
GGTGTTAAGGAAAAAAACGA+TGG + Chr3:4199944-4199963 MsG0380011729.01.T01:CDS 35.0%
GTGTAGACCATCATAACTTA+AGG - Chr3:4201209-4201228 None:intergenic 35.0%
GTTAAGCCAAACCATGTATT+TGG + Chr3:4200908-4200927 MsG0380011729.01.T01:intron 35.0%
GTTACCTCCATCATAAACAT+GGG - Chr3:4200374-4200393 None:intergenic 35.0%
GTTGGAATGGATCAATGTTT+CGG + Chr3:4201592-4201611 MsG0380011729.01.T01:intron 35.0%
TATCAATCTCCCTGAATTTC+TGG - Chr3:4202330-4202349 None:intergenic 35.0%
TATGCCAATAAACTACTTGC+AGG - Chr3:4202210-4202229 None:intergenic 35.0%
TCACAGTTATCCCAAAATTC+TGG + Chr3:4203015-4203034 MsG0380011729.01.T01:CDS 35.0%
TCACGATGAAAATGGAATCA+AGG + Chr3:4199661-4199680 MsG0380011729.01.T01:CDS 35.0%
TCATTTGTACATGACTTGAG+AGG + Chr3:4201477-4201496 MsG0380011729.01.T01:intron 35.0%
TCTCAACAAGATCATAGATG+CGG + Chr3:4202825-4202844 MsG0380011729.01.T01:CDS 35.0%
TGGAAGAAAAGAATCGAGTA+TGG + Chr3:4202258-4202277 MsG0380011729.01.T01:intron 35.0%
TTACCTCCATCATAAACATG+GGG - Chr3:4200373-4200392 None:intergenic 35.0%
TTCTTTATAACCTAGGGTGT+TGG - Chr3:4202647-4202666 None:intergenic 35.0%
TTGGAATGGATCAATGTTTC+GGG + Chr3:4201593-4201612 MsG0380011729.01.T01:intron 35.0%
! AAGGGTTCTGATGAGAAATT+AGG + Chr3:4199680-4199699 MsG0380011729.01.T01:CDS 35.0%
! AGGGTTCTGATGAGAAATTA+GGG + Chr3:4199681-4199700 MsG0380011729.01.T01:CDS 35.0%
! ATAATCTTGTTCTTGGTGGT+TGG + Chr3:4201841-4201860 MsG0380011729.01.T01:intron 35.0%
! CTAATTTTGCAGGCTTAAGT+CGG - Chr3:4203051-4203070 None:intergenic 35.0%
! GGAATGTAGTGTTTTCTGAT+GGG + Chr3:4199984-4200003 MsG0380011729.01.T01:CDS 35.0%
! TGACTAGCAGTTGCAAATTT+TGG + Chr3:4201034-4201053 MsG0380011729.01.T01:intron 35.0%
!! AATCTCATGCATTGACTTGA+TGG + Chr3:4201527-4201546 MsG0380011729.01.T01:intron 35.0%
!! ATCTCATGCATTGACTTGAT+GGG + Chr3:4201528-4201547 MsG0380011729.01.T01:intron 35.0%
!! TTTTGAAGAGGGGTTTATCT+GGG + Chr3:4199888-4199907 MsG0380011729.01.T01:CDS 35.0%
!!! TACCCTTCTTTTTTAGGGTA+GGG + Chr3:4203150-4203169 MsG0380011729.01.T01:three_prime_UTR 35.0%
!!! TTACCCTTCTTTTTTAGGGT+AGG + Chr3:4203149-4203168 MsG0380011729.01.T01:three_prime_UTR 35.0%
!!! TTGGATCTGGTTTTGTTGTT+GGG + Chr3:4200047-4200066 MsG0380011729.01.T01:CDS 35.0%
!!! TTTTGTTGTTGGGACTGATT+CGG + Chr3:4200057-4200076 MsG0380011729.01.T01:CDS 35.0%
AAAGACACCTTGCCTATAGT+TGG - Chr3:4200314-4200333 None:intergenic 40.0%
AAATGACTGAGACGTACGTT+TGG + Chr3:4203296-4203315 MsG0380011729.01.T01:three_prime_UTR 40.0%
AAGGGGTTGGATTGAAGAAA+TGG + Chr3:4199804-4199823 MsG0380011729.01.T01:CDS 40.0%
AATTGCAGATTGGCAACAAG+AGG - Chr3:4200673-4200692 None:intergenic 40.0%
AGATCTACAGGAGAATTCTG+CGG + Chr3:4200469-4200488 MsG0380011729.01.T01:CDS 40.0%
AGGAAACTTACCAGTAGTCA+AGG - Chr3:4202611-4202630 None:intergenic 40.0%
ATCCCCTACCCTAAAAAAGA+AGG - Chr3:4203156-4203175 None:intergenic 40.0%
ATCCTTTGATCGAGTCTATC+AGG + Chr3:4200555-4200574 MsG0380011729.01.T01:CDS 40.0%
ATTCGGAGAATAGTGAGGAT+CGG + Chr3:4200074-4200093 MsG0380011729.01.T01:CDS 40.0%
ATTTCACCAAGGAATGAAGC+TGG + Chr3:4200419-4200438 MsG0380011729.01.T01:CDS 40.0%
CAAAAACACCATCTAGTAGC+AGG - Chr3:4200971-4200990 None:intergenic 40.0%
CAAAAGGTTCAGCAAGGAAA+GGG + Chr3:4200196-4200215 MsG0380011729.01.T01:intron 40.0%
CAGATTCGAGATCCAACTAT+AGG + Chr3:4200299-4200318 MsG0380011729.01.T01:intron 40.0%
CAGCACAGATCTAAATATGC+AGG - Chr3:4201320-4201339 None:intergenic 40.0%
CATATTTAGATCTGTGCTGG+TGG + Chr3:4201321-4201340 MsG0380011729.01.T01:intron 40.0%
CATCGTAGATGTAGATCAGA+TGG + Chr3:4201894-4201913 MsG0380011729.01.T01:intron 40.0%
CGTTACCTCCATCATAAACA+TGG - Chr3:4200375-4200394 None:intergenic 40.0%
CTGCATATTTAGATCTGTGC+TGG + Chr3:4201318-4201337 MsG0380011729.01.T01:intron 40.0%
GAAGAACAAAGCAGAAGAGT+TGG + Chr3:4202867-4202886 MsG0380011729.01.T01:CDS 40.0%
GAGGAAGCTGTGAATTCTAA+AGG + Chr3:4199770-4199789 MsG0380011729.01.T01:CDS 40.0%
GCAACAATTCCTTCTTGATC+TGG - Chr3:4199737-4199756 None:intergenic 40.0%
GGTGTAAAACCAGATCAAGA+AGG + Chr3:4199725-4199744 MsG0380011729.01.T01:CDS 40.0%
TAAGATCCAAGTGAGATGGT+TGG + Chr3:4201574-4201593 MsG0380011729.01.T01:intron 40.0%
TAAGGTGATGCAGAACTTGA+AGG + Chr3:4202735-4202754 MsG0380011729.01.T01:CDS 40.0%
TACCTCCATCATAAACATGG+GGG - Chr3:4200372-4200391 None:intergenic 40.0%
TAGAATCTGTACTAGAACCC+CGG - Chr3:4200018-4200037 None:intergenic 40.0%
TATGATGGTCTACACTCTAC+AGG + Chr3:4201214-4201233 MsG0380011729.01.T01:intron 40.0%
TCAAAAGGTTCAGCAAGGAA+AGG + Chr3:4200195-4200214 MsG0380011729.01.T01:intron 40.0%
TCCCCTACCCTAAAAAAGAA+GGG - Chr3:4203155-4203174 None:intergenic 40.0%
TCGTAGATGTAGATCAGATG+GGG + Chr3:4201896-4201915 MsG0380011729.01.T01:intron 40.0%
TCTAGATATGCAGTTGGATC+TGG + Chr3:4200034-4200053 MsG0380011729.01.T01:CDS 40.0%
TCTTCCTCAATGTCAAGCAA+TGG - Chr3:4201928-4201947 None:intergenic 40.0%
TGATGCAGAACTTGAAGGTT+GGG + Chr3:4202740-4202759 MsG0380011729.01.T01:CDS 40.0%
TGCAGAAGTCCAGAAATTCA+GGG + Chr3:4202318-4202337 MsG0380011729.01.T01:intron 40.0%
TGGAAGAGTCAAGTTTGAGA+AGG + Chr3:4200252-4200271 MsG0380011729.01.T01:intron 40.0%
TGGTGAAGATGAAGATCTAC+AGG + Chr3:4200457-4200476 MsG0380011729.01.T01:CDS 40.0%
TGTCAATTAAGCTGCTAGCA+AGG + Chr3:4200798-4200817 MsG0380011729.01.T01:intron 40.0%
TTGCAGAAGTCCAGAAATTC+AGG + Chr3:4202317-4202336 MsG0380011729.01.T01:intron 40.0%
TTTAGTGAACTCGGCTCAAA+AGG + Chr3:4200180-4200199 MsG0380011729.01.T01:CDS 40.0%
! ACGAGATCGAGGATCTTTTT+AGG + Chr3:4202674-4202693 MsG0380011729.01.T01:CDS 40.0%
! ACTCGATATCTGAAACTCCA+AGG - Chr3:4202494-4202513 None:intergenic 40.0%
! CACAACAACCCCAGAATTTT+GGG - Chr3:4203028-4203047 None:intergenic 40.0%
! CTGCAAGAGCACATACAAAT+TGG - Chr3:4202303-4202322 None:intergenic 40.0%
! GAGAACCTGTGCTTGATTTT+CGG - Chr3:4202809-4202828 None:intergenic 40.0%
! GCTGCAGAAAAGAGTATGTA+AGG + Chr3:4202933-4202952 MsG0380011729.01.T01:CDS 40.0%
! GGAAGCTGTGAATTCTAAAG+GGG + Chr3:4199772-4199791 MsG0380011729.01.T01:CDS 40.0%
! GGGAATGTAGTGTTTTCTGA+TGG + Chr3:4199983-4200002 MsG0380011729.01.T01:CDS 40.0%
! GTGTTGGCAGATTCTTCTTT+AGG - Chr3:4202631-4202650 None:intergenic 40.0%
! GTTTATGATGGAGGTAACGA+TGG + Chr3:4200376-4200395 MsG0380011729.01.T01:CDS 40.0%
! TTCAATCCAACCCCTTTTCT+TGG - Chr3:4199800-4199819 None:intergenic 40.0%
!! AAACCTTTTGGAAAGCAAGC+TGG + Chr3:4202528-4202547 MsG0380011729.01.T01:CDS 40.0%
!! AATTCGAGTGCTGATGAATC+CGG + Chr3:4199860-4199879 MsG0380011729.01.T01:CDS 40.0%
!! CGAGGATCTTTTTAGGCAAA+AGG + Chr3:4202681-4202700 MsG0380011729.01.T01:CDS 40.0%
!! TCTCATGCATTGACTTGATG+GGG + Chr3:4201529-4201548 MsG0380011729.01.T01:intron 40.0%
!!! AATCCGGTAAGGTTTTGAAG+AGG + Chr3:4199876-4199895 MsG0380011729.01.T01:CDS 40.0%
!!! ACCCTTCTTTTTTAGGGTAG+GGG + Chr3:4203151-4203170 MsG0380011729.01.T01:three_prime_UTR 40.0%
!!! ATCCGGTAAGGTTTTGAAGA+GGG + Chr3:4199877-4199896 MsG0380011729.01.T01:CDS 40.0%
!!! GTTGGATCTGGTTTTGTTGT+TGG + Chr3:4200046-4200065 MsG0380011729.01.T01:CDS 40.0%
!!! GTTTTGAAGAGGGGTTTATC+TGG + Chr3:4199887-4199906 MsG0380011729.01.T01:CDS 40.0%
AACCCCCATGTTTATGATGG+AGG + Chr3:4200367-4200386 MsG0380011729.01.T01:CDS 45.0%
AACCTTCTTCAAGTGCTTCC+TGG - Chr3:4200595-4200614 None:intergenic 45.0%
ACCCCTCTTCAAAACCTTAC+CGG - Chr3:4199882-4199901 None:intergenic 45.0%
ACTGTCCGAAAATCAAGCAC+AGG + Chr3:4202801-4202820 MsG0380011729.01.T01:CDS 45.0%
AGAAGTAGAGTACGAGATCG+AGG + Chr3:4202663-4202682 MsG0380011729.01.T01:CDS 45.0%
ATTCTGCGGCAAATCAGTCT+TGG + Chr3:4200483-4200502 MsG0380011729.01.T01:CDS 45.0%
CAAATGGAGAATGAGCACCT+TGG + Chr3:4201356-4201375 MsG0380011729.01.T01:intron 45.0%
CACTTAACTGAGTCGTCTTC+TGG - Chr3:4202367-4202386 None:intergenic 45.0%
CATGACTTGAGAGGTCCATT+TGG + Chr3:4201486-4201505 MsG0380011729.01.T01:intron 45.0%
CCAAGGAATGAAGCTGGTTA+TGG + Chr3:4200425-4200444 MsG0380011729.01.T01:CDS 45.0%
CCATAACCAGCTTCATTCCT+TGG - Chr3:4200428-4200447 None:intergenic 45.0%
CGTAGATGTAGATCAGATGG+GGG + Chr3:4201897-4201916 MsG0380011729.01.T01:intron 45.0%
CTCCTGATAGACTCGATCAA+AGG - Chr3:4200560-4200579 None:intergenic 45.0%
CTTGAAACAGCCTTGACTAC+TGG + Chr3:4202598-4202617 MsG0380011729.01.T01:CDS 45.0%
GATCATAGATGCGGAGAGTA+AGG + Chr3:4202834-4202853 MsG0380011729.01.T01:CDS 45.0%
GATCTTCAGCACTTGTAGAC+TGG - Chr3:4200538-4200557 None:intergenic 45.0%
GATGCAGAACTTGAAGGTTG+GGG + Chr3:4202741-4202760 MsG0380011729.01.T01:CDS 45.0%
GCATAAAGTTGCTGCCTGTA+AGG + Chr3:4200990-4201009 MsG0380011729.01.T01:intron 45.0%
GCTGCCTGCAAGTAGTTTAT+TGG + Chr3:4202203-4202222 MsG0380011729.01.T01:intron 45.0%
GCTGGTTATGGCAACGAAAA+TGG + Chr3:4200437-4200456 MsG0380011729.01.T01:CDS 45.0%
GGAACTTGAAGCAGCTTGAT+TGG - Chr3:4202473-4202492 None:intergenic 45.0%
GGTAACCCCCATGTTTATGA+TGG + Chr3:4200364-4200383 MsG0380011729.01.T01:CDS 45.0%
GGTATCACTGCTGTTGATCT+TGG + Chr3:4202403-4202422 MsG0380011729.01.T01:CDS 45.0%
GTGATGCAGAACTTGAAGGT+TGG + Chr3:4202739-4202758 MsG0380011729.01.T01:CDS 45.0%
TAAAGTTGCTGCCTGTAAGG+TGG + Chr3:4200993-4201012 MsG0380011729.01.T01:intron 45.0%
TAGGCAAAAGGTTGAAGCTG+AGG + Chr3:4202693-4202712 MsG0380011729.01.T01:CDS 45.0%
TCCAAGTGAGATGGTTGGAA+TGG + Chr3:4201579-4201598 MsG0380011729.01.T01:intron 45.0%
TCCATTCCAACCATCTCACT+TGG - Chr3:4201583-4201602 None:intergenic 45.0%
TCGAGATCCAACTATAGGCA+AGG + Chr3:4200304-4200323 MsG0380011729.01.T01:CDS 45.0%
TCTAGTAGCAGGTGAGTTCA+AGG - Chr3:4200960-4200979 None:intergenic 45.0%
TCTCGAATCTGAATCCAAGC+TGG - Chr3:4200290-4200309 None:intergenic 45.0%
TGAACTCACCTGCTACTAGA+TGG + Chr3:4200960-4200979 MsG0380011729.01.T01:intron 45.0%
TGAATACCTAGCCATCGCTA+AGG + Chr3:4202717-4202736 MsG0380011729.01.T01:CDS 45.0%
TGACTTGATGGGGAGATAGA+GGG + Chr3:4201539-4201558 MsG0380011729.01.T01:intron 45.0%
TGGTCCATTGCTTGACATTG+AGG + Chr3:4201921-4201940 MsG0380011729.01.T01:intron 45.0%
TGTTGCTGAATTGGGTAGTG+AGG + Chr3:4199751-4199770 MsG0380011729.01.T01:CDS 45.0%
TGTTTAGAGAAAAGGCAGGG+TGG + Chr3:4201796-4201815 MsG0380011729.01.T01:intron 45.0%
TTCTGCGGCAAATCAGTCTT+GGG + Chr3:4200484-4200503 MsG0380011729.01.T01:CDS 45.0%
! AGTGCTGGAGAAACTTTCCA+AGG - Chr3:4201376-4201395 None:intergenic 45.0%
! GCACAACAACCCCAGAATTT+TGG - Chr3:4203029-4203048 None:intergenic 45.0%
! TCAAGCTGCTTCAAGTTCCT+TGG + Chr3:4202474-4202493 MsG0380011729.01.T01:CDS 45.0%
! TGAAAATCTGCGGGGTGTTA+AGG + Chr3:4199931-4199950 MsG0380011729.01.T01:CDS 45.0%
! TGCTTGCTACGAAGGATTCT+AGG + Chr3:4202566-4202585 MsG0380011729.01.T01:CDS 45.0%
! TTGACTTGATGGGGAGATAG+AGG + Chr3:4201538-4201557 MsG0380011729.01.T01:intron 45.0%
! TTTCTGATGGGCATGCAATC+CGG + Chr3:4199996-4200015 MsG0380011729.01.T01:CDS 45.0%
!! CTAAAGGGGCACCAAGAAAA+GGG + Chr3:4199786-4199805 MsG0380011729.01.T01:CDS 45.0%
!! GACTGATTCGGAGAATAGTG+AGG + Chr3:4200069-4200088 MsG0380011729.01.T01:CDS 45.0%
!! TAAAGGGGCACCAAGAAAAG+GGG + Chr3:4199787-4199806 MsG0380011729.01.T01:CDS 45.0%
!! TCTAAAGGGGCACCAAGAAA+AGG + Chr3:4199785-4199804 MsG0380011729.01.T01:CDS 45.0%
!!! TCCGGTAAGGTTTTGAAGAG+GGG + Chr3:4199878-4199897 MsG0380011729.01.T01:CDS 45.0%
AAGAGGGGTTTATCTGGGTC+TGG + Chr3:4199893-4199912 MsG0380011729.01.T01:CDS 50.0%
AAGTGTAGCAGTGCATCTGC+TGG + Chr3:4202382-4202401 MsG0380011729.01.T01:CDS 50.0%
ACTTGATGGGGAGATAGAGG+GGG + Chr3:4201541-4201560 MsG0380011729.01.T01:intron 50.0%
AGAGGGGTTTATCTGGGTCT+GGG + Chr3:4199894-4199913 MsG0380011729.01.T01:CDS 50.0%
ATGAGAAAGGCCGTGGTAGT+AGG + Chr3:4200140-4200159 MsG0380011729.01.T01:CDS 50.0%
ATTGAGAGCTCTGCGAAACC+TGG + Chr3:4200223-4200242 MsG0380011729.01.T01:intron 50.0%
CCTTTCTCATGCCTCACCTT+CGG - Chr3:4200130-4200149 None:intergenic 50.0%
GAAGAATCTGCCAACACCCT+AGG + Chr3:4202634-4202653 MsG0380011729.01.T01:CDS 50.0%
GACTTGATGGGGAGATAGAG+GGG + Chr3:4201540-4201559 MsG0380011729.01.T01:intron 50.0%
GATGTAGATCAGATGGGGGA+TGG + Chr3:4201901-4201920 MsG0380011729.01.T01:intron 50.0%
GGATTTGGGAAGTGAATCGG+TGG + Chr3:4199622-4199641 MsG0380011729.01.T01:CDS 50.0%
GTTCTGCATCACCTTAGCGA+TGG - Chr3:4202731-4202750 None:intergenic 50.0%
TCGGCTCAAAAGGTTCAGCA+AGG + Chr3:4200190-4200209 MsG0380011729.01.T01:intron 50.0%
! CCTCCAGCTTGCTTTCCAAA+AGG - Chr3:4202534-4202553 None:intergenic 50.0%
! TTCTGATGGGCATGCAATCC+GGG + Chr3:4199997-4200016 MsG0380011729.01.T01:CDS 50.0%
!! CCTTTTGGAAAGCAAGCTGG+AGG + Chr3:4202531-4202550 MsG0380011729.01.T01:CDS 50.0%
!! GAGTGCTGATGAATCCGGTA+AGG + Chr3:4199865-4199884 MsG0380011729.01.T01:CDS 50.0%
!! GTCCAGGAAGCACTTGAAGA+AGG + Chr3:4200590-4200609 MsG0380011729.01.T01:CDS 50.0%
AGCAAGCTGGAGGAGTTGCA+AGG + Chr3:4202541-4202560 MsG0380011729.01.T01:CDS 55.0%
ATGGGTCTTCGAGCGCGTTT+GGG + Chr3:4199963-4199982 MsG0380011729.01.T01:CDS 55.0%
CCGAAGGTGAGGCATGAGAA+AGG + Chr3:4200127-4200146 MsG0380011729.01.T01:CDS 55.0%
CGAGTCTATCAGGAGCCTTC+AGG + Chr3:4200565-4200584 MsG0380011729.01.T01:CDS 55.0%
GCATCACCTTAGCGATGGCT+AGG - Chr3:4202726-4202745 None:intergenic 55.0%
TTGACTCTTCCACCACCTCC+AGG - Chr3:4200244-4200263 None:intergenic 55.0%
! TCTGATGGGCATGCAATCCG+GGG + Chr3:4199998-4200017 MsG0380011729.01.T01:CDS 55.0%
AGCTCTGCGAAACCTGGAGG+TGG + Chr3:4200229-4200248 MsG0380011729.01.T01:intron 60.0%
CACTGCAGCTAGTGAGCCGA+AGG + Chr3:4200111-4200130 MsG0380011729.01.T01:CDS 60.0%
CAGCTAGTGAGCCGAAGGTG+AGG + Chr3:4200116-4200135 MsG0380011729.01.T01:CDS 60.0%
CTTCGGCTCACTAGCTGCAG+TGG - Chr3:4200113-4200132 None:intergenic 60.0%
GAGAGCTCTGCGAAACCTGG+AGG + Chr3:4200226-4200245 MsG0380011729.01.T01:intron 60.0%
GATGGGTCTTCGAGCGCGTT+TGG + Chr3:4199962-4199981 MsG0380011729.01.T01:CDS 60.0%
GTGAGGCATGAGAAAGGCCG+TGG + Chr3:4200133-4200152 MsG0380011729.01.T01:CDS 60.0%
GTGCTTCCTGGACAGCCTGA+AGG - Chr3:4200583-4200602 None:intergenic 60.0%
TCTGCGAAACCTGGAGGTGG+TGG + Chr3:4200232-4200251 MsG0380011729.01.T01:intron 60.0%
! GCAAGGCGTGCTTGCTACGA+AGG + Chr3:4202558-4202577 MsG0380011729.01.T01:CDS 60.0%
! GGGGCACCAAGAAAAGGGGT+TGG + Chr3:4199791-4199810 MsG0380011729.01.T01:CDS 60.0%
CAGGAGCCTTCAGGCTGTCC+AGG + Chr3:4200574-4200593 MsG0380011729.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 4199620 4203319 4199620 ID=MsG0380011729.01;Name=MsG0380011729.01
Chr3 mRNA 4199620 4203319 4199620 ID=MsG0380011729.01.T01;Parent=MsG0380011729.01;Name=MsG0380011729.01.T01;_AED=0.27;_eAED=0.27;_QI=0|0.5|0.33|1|1|1|3|263|541
Chr3 exon 4199620 4200201 4199620 ID=MsG0380011729.01.T01:exon:1060;Parent=MsG0380011729.01.T01
Chr3 exon 4200302 4200611 4200302 ID=MsG0380011729.01.T01:exon:1061;Parent=MsG0380011729.01.T01
Chr3 exon 4202323 4203319 4202323 ID=MsG0380011729.01.T01:exon:1062;Parent=MsG0380011729.01.T01
Chr3 CDS 4199620 4200201 4199620 ID=MsG0380011729.01.T01:cds;Parent=MsG0380011729.01.T01
Chr3 CDS 4200302 4200611 4200302 ID=MsG0380011729.01.T01:cds;Parent=MsG0380011729.01.T01
Chr3 CDS 4202323 4203056 4202323 ID=MsG0380011729.01.T01:cds;Parent=MsG0380011729.01.T01
Chr3 three_prime_UTR 4203057 4203319 4203057 ID=MsG0380011729.01.T01:three_prime_utr;Parent=MsG0380011729.01.T01
Gene Sequence

>MsG0380011729.01.T01

ATGGATTTGGGAAGTGAATCGGTGGAAGAGAATGAAGTGAATCACGATGAAAATGGAATCAAGGGTTCTGATGAGAAATTAGGGTTTCAATTTGATGGCAATTTTGGTGTAAAACCAGATCAAGAAGGAATTGTTGCTGAATTGGGTAGTGAGGAAGCTGTGAATTCTAAAGGGGCACCAAGAAAAGGGGTTGGATTGAAGAAATGGAAGAGAATTAGGAGGAATGTTGTTAGGGATCATAATTCGAGTGCTGATGAATCCGGTAAGGTTTTGAAGAGGGGTTTATCTGGGTCTGGGAATGCGAATTTGAGTGAAAATCTGCGGGGTGTTAAGGAAAAAAACGATGGGTCTTCGAGCGCGTTTGGGAATGTAGTGTTTTCTGATGGGCATGCAATCCGGGGTTCTAGTACAGATTCTAGATATGCAGTTGGATCTGGTTTTGTTGTTGGGACTGATTCGGAGAATAGTGAGGATCGGAGTAGTAAGTCTTCCACTGCAGCTAGTGAGCCGAAGGTGAGGCATGAGAAAGGCCGTGGTAGTAGGAATACAAATTCGAAGAATTTAGTGAACTCGGCTCAAAAGATTCGAGATCCAACTATAGGCAAGGTGTCTTTAGTACAGTTACTAGTAATGGAAAACATAGTGGTAACCCCCATGTTTATGATGGAGGTAACGATGGTGAAGCTCATACTAATGAACATTTCACCAAGGAATGAAGCTGGTTATGGCAACGAAAATGGTGAAGATGAAGATCTACAGGAGAATTCTGCGGCAAATCAGTCTTGGGATGCTCCTGAAGAAAAAAGTGAGAACAACCAGTCTACAAGTGCTGAAGATCCTTTGATCGAGTCTATCAGGAGCCTTCAGGCTGTCCAGGAAGCACTTGAAGAAGAAGTCCAGAAATTCAGGGAGATTGATACTGAAGTTGTCTCACCAGAAGACGACTCAGTTAAGTGTAGCAGTGCATCTGCTGGTATCACTGCTGTTGATCTTGGACTTCACAAGTCATTCTTATCTAGTCATTCTAGTGCAGATGAAACCAATCAAGCTGCTTCAAGTTCCTTGGAGTTTCAGATATCGAGTTTGAAACAACATGTAAACCTTTTGGAAAGCAAGCTGGAGGAGTTGCAAGGCGTGCTTGCTACGAAGGATTCTAGGATAGTTGAACTTGAAACAGCCTTGACTACTGGTAAGTTTCCTAAAGAAGAATCTGCCAACACCCTAGGTTATAAAGAAGTAGAGTACGAGATCGAGGATCTTTTTAGGCAAAAGGTTGAAGCTGAGGTTGAATACCTAGCCATCGCTAAGGTGATGCAGAACTTGAAGGTTGGGGCAGATTTACAATTTACATTATTGGAAGAACAAGAGAAACTGTCCGAAAATCAAGCACAGGTTCTCAACAAGATCATAGATGCGGAGAGTAAGGCTTCAGTGCTGAAGAACAAAGCAGAAGAGTTGGAAAAATACTGTGGTGATAGTTTAGTAATTGAGGAATCTTTTTTGCTGCAGAAAAGAGTATGTAAGGTGTCATTTTATCTTTTCCTACAGTTCATGATGTTAATCTTGTTCTTTTGGTTTCTTGTGTCACAGTTATCCCAAAATTCTGGGGTTGTTGTGCCGACTTAA

Protein sequence

>MsG0380011729.01.T01

MDLGSESVEENEVNHDENGIKGSDEKLGFQFDGNFGVKPDQEGIVAELGSEEAVNSKGAPRKGVGLKKWKRIRRNVVRDHNSSADESGKVLKRGLSGSGNANLSENLRGVKEKNDGSSSAFGNVVFSDGHAIRGSSTDSRYAVGSGFVVGTDSENSEDRSSKSSTAASEPKVRHEKGRGSRNTNSKNLVNSAQKIRDPTIGKVSLVQLLVMENIVVTPMFMMEVTMVKLILMNISPRNEAGYGNENGEDEDLQENSAANQSWDAPEEKSENNQSTSAEDPLIESIRSLQAVQEALEEEVQKFREIDTEVVSPEDDSVKCSSASAGITAVDLGLHKSFLSSHSSADETNQAASSSLEFQISSLKQHVNLLESKLEELQGVLATKDSRIVELETALTTGKFPKEESANTLGYKEVEYEIEDLFRQKVEAEVEYLAIAKVMQNLKVGADLQFTLLEEQEKLSENQAQVLNKIIDAESKASVLKNKAEELEKYCGDSLVIEESFLLQKRVCKVSFYLFLQFMMLILFFWFLVSQLSQNSGVVVPT*