Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045841.01.T01 | MCH88508.1 | 93.793 | 145 | 9 | 0 | 69 | 213 | 24 | 168 | 3.90E-94 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045841.01.T01 | A0A392MPD7 | 93.793 | 145 | 9 | 0 | 69 | 213 | 24 | 168 | 1.86e-94 | 282 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047793.01 | MsG0880045841.01 | 0.849238 | 3.675830e-60 | 6.924893e-57 |
| MsG0080048374.01 | MsG0880045841.01 | 0.900315 | 8.282366e-78 | 1.065147e-73 |
| MsG0080048602.01 | MsG0880045841.01 | 0.862928 | 3.579020e-64 | 1.066212e-60 |
| MsG0080048763.01 | MsG0880045841.01 | 0.813899 | 2.026400e-51 | 1.339969e-48 |
| MsG0180000146.01 | MsG0880045841.01 | 0.839031 | 2.020132e-57 | 2.755074e-54 |
| MsG0180000741.01 | MsG0880045841.01 | 0.811359 | 7.284656e-51 | 4.499518e-48 |
| MsG0180002072.01 | MsG0880045841.01 | 0.814400 | 1.570614e-51 | 1.052829e-48 |
| MsG0880045841.01 | MsG0880046100.01 | 0.817381 | 3.397054e-52 | 2.470128e-49 |
| MsG0880045841.01 | MsG0880046556.01 | 0.804099 | 2.541853e-49 | 1.299222e-46 |
| MsG0880045841.01 | MsG0880046990.01 | 0.803515 | 3.360767e-49 | 1.692240e-46 |
| MsG0880045841.01 | MsG0880047289.01 | 0.813483 | 2.501620e-51 | 1.635746e-48 |
| MsG0880045841.01 | MsG0880047293.01 | 0.838313 | 3.096432e-57 | 4.131077e-54 |
| MsG0180003303.01 | MsG0880045841.01 | 0.823623 | 1.253645e-53 | 1.085132e-50 |
| MsG0180003928.01 | MsG0880045841.01 | 0.852309 | 5.025375e-61 | 1.045816e-57 |
| MsG0180003937.01 | MsG0880045841.01 | 0.852916 | 3.372759e-61 | 7.158896e-58 |
| MsG0180004139.01 | MsG0880045841.01 | 0.806953 | 6.403602e-50 | 3.521972e-47 |
| MsG0180004383.01 | MsG0880045841.01 | 0.880705 | 4.402716e-70 | 2.508118e-66 |
| MsG0180004872.01 | MsG0880045841.01 | 0.836931 | 7.006624e-57 | 8.961868e-54 |
| MsG0180004989.01 | MsG0880045841.01 | 0.805093 | 1.576717e-49 | 8.267947e-47 |
| MsG0180005246.01 | MsG0880045841.01 | 0.812604 | 3.899396e-51 | 2.490133e-48 |
| MsG0180005985.01 | MsG0880045841.01 | 0.884575 | 1.705974e-71 | 1.131536e-67 |
| MsG0280006304.01 | MsG0880045841.01 | 0.877024 | 8.752311e-69 | 4.334726e-65 |
| MsG0280006432.01 | MsG0880045841.01 | 0.800356 | 1.497761e-48 | 6.959588e-46 |
| MsG0780040687.01 | MsG0880045841.01 | 0.840842 | 6.816768e-58 | 9.832629e-55 |
| MsG0780041278.01 | MsG0880045841.01 | 0.807939 | 3.955838e-50 | 2.232252e-47 |
| MsG0780041310.01 | MsG0880045841.01 | 0.803491 | 3.399378e-49 | 1.710603e-46 |
| MsG0780041371.01 | MsG0880045841.01 | 0.837644 | 4.603553e-57 | 6.018735e-54 |
| MsG0780041598.01 | MsG0880045841.01 | 0.828011 | 1.139270e-54 | 1.118480e-51 |
| MsG0880042329.01 | MsG0880045841.01 | 0.800740 | 1.250664e-48 | 5.868180e-46 |
| MsG0880042783.01 | MsG0880045841.01 | 0.811427 | 7.041122e-51 | 4.357297e-48 |
| MsG0880042838.01 | MsG0880045841.01 | 0.867883 | 9.853116e-66 | 3.494457e-62 |
| MsG0880042983.01 | MsG0880045841.01 | 0.837981 | 3.771044e-57 | 4.981501e-54 |
| MsG0880043145.01 | MsG0880045841.01 | 0.802855 | 4.602654e-49 | 2.278683e-46 |
| MsG0280010563.01 | MsG0880045841.01 | 0.830773 | 2.431285e-55 | 2.586931e-52 |
| MsG0280010735.01 | MsG0880045841.01 | 0.845939 | 2.968919e-59 | 5.028761e-56 |
| MsG0280010866.01 | MsG0880045841.01 | 0.818554 | 1.845154e-52 | 1.385583e-49 |
| MsG0280010932.01 | MsG0880045841.01 | 0.848228 | 7.006398e-60 | 1.276985e-56 |
| MsG0280011056.01 | MsG0880045841.01 | 0.823917 | 1.069894e-53 | 9.338022e-51 |
| MsG0280011075.01 | MsG0880045841.01 | 0.877330 | 6.849894e-69 | 3.431218e-65 |
| MsG0280011085.01 | MsG0880045841.01 | 0.868430 | 6.570389e-66 | 2.375567e-62 |
| MsG0280011336.01 | MsG0880045841.01 | 0.804484 | 2.112559e-49 | 1.090511e-46 |
| MsG0380011647.01 | MsG0880045841.01 | 0.805566 | 1.254685e-49 | 6.659660e-47 |
| MsG0380011721.01 | MsG0880045841.01 | 0.814866 | 1.238504e-51 | 8.406442e-49 |
| MsG0380014138.01 | MsG0880045841.01 | 0.806459 | 8.141383e-50 | 4.421450e-47 |
| MsG0480018643.01 | MsG0880045841.01 | 0.813180 | 2.916733e-51 | 1.891273e-48 |
| MsG0480019395.01 | MsG0880045841.01 | 0.831966 | 1.237052e-55 | 1.363621e-52 |
| MsG0480019884.01 | MsG0880045841.01 | 0.802478 | 5.504728e-49 | 2.699189e-46 |
| MsG0480021216.01 | MsG0880045841.01 | 0.852062 | 5.907035e-61 | 1.219593e-57 |
| MsG0480022317.01 | MsG0880045841.01 | 0.859210 | 4.841964e-63 | 1.268806e-59 |
| MsG0480022398.01 | MsG0880045841.01 | 0.820454 | 6.800086e-53 | 5.383191e-50 |
| MsG0480022552.01 | MsG0880045841.01 | 0.825123 | 5.564999e-54 | 5.027273e-51 |
| MsG0480022710.01 | MsG0880045841.01 | 0.817954 | 2.521858e-52 | 1.862706e-49 |
| MsG0480022719.01 | MsG0880045841.01 | 0.843710 | 1.185054e-58 | 1.870000e-55 |
| MsG0480022819.01 | MsG0880045841.01 | 0.849135 | 3.927634e-60 | 7.374476e-57 |
| MsG0480023609.01 | MsG0880045841.01 | 0.846771 | 1.761972e-59 | 3.065686e-56 |
| MsG0580024770.01 | MsG0880045841.01 | 0.864076 | 1.577466e-64 | 4.889969e-61 |
| MsG0580024959.01 | MsG0880045841.01 | 0.861173 | 1.235981e-63 | 3.465207e-60 |
| MsG0580025128.01 | MsG0880045841.01 | 0.896270 | 4.334190e-76 | 4.655482e-72 |
| MsG0380015495.01 | MsG0880045841.01 | 0.851169 | 1.057419e-60 | 2.121540e-57 |
| MsG0380015639.01 | MsG0880045841.01 | 0.821124 | 4.769281e-53 | 3.846505e-50 |
| MsG0380016589.01 | MsG0880045841.01 | 0.891391 | 4.147372e-74 | 3.629398e-70 |
| MsG0380017045.01 | MsG0880045841.01 | 0.872346 | 3.411765e-67 | 1.422786e-63 |
| MsG0380017077.01 | MsG0880045841.01 | 0.816768 | 4.664475e-52 | 3.335119e-49 |
| MsG0380017410.01 | MsG0880045841.01 | 0.846718 | 1.821625e-59 | 3.164133e-56 |
| MsG0480018086.01 | MsG0880045841.01 | 0.801880 | 7.307872e-49 | 3.529385e-46 |
| MsG0480018256.01 | MsG0880045841.01 | 0.829162 | 6.005403e-55 | 6.097056e-52 |
| MsG0480018311.01 | MsG0880045841.01 | 0.812697 | 3.721258e-51 | 2.382277e-48 |
| MsG0580029007.01 | MsG0880045841.01 | 0.828204 | 1.023896e-54 | 1.010808e-51 |
| MsG0580029036.01 | MsG0880045841.01 | 0.861804 | 7.932694e-64 | 2.271942e-60 |
| MsG0280007726.01 | MsG0880045841.01 | 0.854411 | 1.253572e-61 | 2.796910e-58 |
| MsG0280007819.01 | MsG0880045841.01 | 0.824551 | 7.590653e-54 | 6.745800e-51 |
| MsG0280008574.01 | MsG0880045841.01 | 0.816665 | 4.919937e-52 | 3.507896e-49 |
| MsG0280008849.01 | MsG0880045841.01 | 0.808592 | 2.871989e-50 | 1.648684e-47 |
| MsG0280009386.01 | MsG0880045841.01 | 0.822099 | 2.838942e-53 | 2.353168e-50 |
| MsG0680035681.01 | MsG0880045841.01 | 0.835176 | 1.954011e-56 | 2.370728e-53 |
| MsG0680035737.01 | MsG0880045841.01 | 0.835376 | 1.739254e-56 | 2.123017e-53 |
| MsG0680035874.01 | MsG0880045841.01 | 0.819918 | 9.023777e-53 | 7.037971e-50 |
| MsG0780035936.01 | MsG0880045841.01 | 0.871627 | 5.915501e-67 | 2.402715e-63 |
| MsG0780037301.01 | MsG0880045841.01 | 0.802401 | 5.708673e-49 | 2.793869e-46 |
| MsG0780037876.01 | MsG0880045841.01 | 0.842471 | 2.534393e-58 | 3.846969e-55 |
| MsG0780037920.01 | MsG0880045841.01 | 0.807493 | 4.919973e-50 | 2.744329e-47 |
| MsG0780038422.01 | MsG0880045841.01 | 0.810030 | 1.411625e-50 | 8.418986e-48 |
| MsG0780039497.01 | MsG0880045841.01 | 0.847418 | 1.171092e-59 | 2.080180e-56 |
| MsG0780039530.01 | MsG0880045841.01 | 0.905820 | 2.863734e-80 | 4.714253e-76 |
| MsG0780039587.01 | MsG0880045841.01 | 0.809561 | 1.780278e-50 | 1.048702e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045841.01.T01 | MTR_8g079820 | 98.601 | 143 | 2 | 0 | 71 | 213 | 545 | 687 | 1.79e-90 | 290 |
| MsG0880045841.01.T01 | MTR_8g079820 | 98.077 | 52 | 1 | 0 | 20 | 71 | 401 | 452 | 2.52e-29 | 115 |
| MsG0880045841.01.T01 | MTR_5g017810 | 77.703 | 148 | 29 | 1 | 70 | 213 | 544 | 691 | 6.79e-68 | 221 |
| MsG0880045841.01.T01 | MTR_5g017810 | 78.846 | 52 | 11 | 0 | 20 | 71 | 401 | 452 | 1.42e-20 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045841.01.T01 | AT3G50590 | 62.857 | 140 | 50 | 1 | 74 | 213 | 547 | 684 | 3.06e-52 | 181 |
| MsG0880045841.01.T01 | AT3G50590 | 80.769 | 52 | 10 | 0 | 20 | 71 | 400 | 451 | 3.67e-22 | 94.4 |
| MsG0880045841.01.T01 | AT3G50590 | 62.590 | 139 | 50 | 1 | 74 | 212 | 547 | 683 | 1.28e-51 | 179 |
| MsG0880045841.01.T01 | AT3G50590 | 80.769 | 52 | 10 | 0 | 20 | 71 | 400 | 451 | 4.24e-22 | 94.4 |
Find 47 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATATTGTTAAAAGTTTC+TGG | 0.188443 | 8:+65239906 | MsG0880045841.01.T01:CDS |
| TATCATTGTCCTTGACTTCT+TGG | 0.238251 | 8:-65241956 | None:intergenic |
| ACTTCAGTTTCAAACATAAA+TGG | 0.253441 | 8:-65242038 | None:intergenic |
| GCTTCTCATGGGAACCAAAT+TGG | 0.260613 | 8:+65242232 | MsG0880045841.01.T01:CDS |
| GGTCGAGATGCAGCATTTAT+TGG | 0.287223 | 8:+65241855 | MsG0880045841.01.T01:intron |
| AGTAAAAGCAGTACAGTAAA+AGG | 0.304054 | 8:+65241748 | MsG0880045841.01.T01:CDS |
| TGAGCTTTACTAGTCCAATT+TGG | 0.312070 | 8:-65242246 | None:intergenic |
| ATCATTGTCCTTGACTTCTT+GGG | 0.318559 | 8:-65241955 | None:intergenic |
| ATGAGGGGCAAGCGTGATAT+TGG | 0.330898 | 8:-65241173 | None:intergenic |
| TCTGGGGCTGCATCTAATCC+TGG | 0.351361 | 8:+65239924 | MsG0880045841.01.T01:CDS |
| AAGAAACGAGATTGTACTTC+AGG | 0.358950 | 8:+65242354 | MsG0880045841.01.T01:CDS |
| ACTTCTTGGGAGGTCCCTCC+TGG | 0.363491 | 8:-65241942 | None:intergenic |
| ACTTTGATGTTTGCTTCTCA+TGG | 0.368063 | 8:+65242220 | MsG0880045841.01.T01:CDS |
| CAATATTGTTAAAAGTTTCT+GGG | 0.375634 | 8:+65239907 | MsG0880045841.01.T01:CDS |
| CACGATCATACCTCACAAAC+TGG | 0.383863 | 8:-65241233 | None:intergenic |
| CTGATATTGTAAGATTACTA+TGG | 0.435020 | 8:-65240156 | None:intergenic |
| CTTTGATGTTTGCTTCTCAT+GGG | 0.453671 | 8:+65242221 | MsG0880045841.01.T01:CDS |
| GGACTAGTAAAGCTCATTGA+AGG | 0.475014 | 8:+65242253 | MsG0880045841.01.T01:CDS |
| TTGCTATACTTGATGAGGAC+AGG | 0.489776 | 8:+65241895 | MsG0880045841.01.T01:CDS |
| ACTAATGTTGGTTCAATTCG+TGG | 0.505333 | 8:+65242008 | MsG0880045841.01.T01:CDS |
| TATATTTCCACCAAAAGTGA+TGG | 0.507272 | 8:+65242310 | MsG0880045841.01.T01:CDS |
| CTGGGGCTGCATCTAATCCT+GGG | 0.510408 | 8:+65239925 | MsG0880045841.01.T01:CDS |
| ATACTTGATGAGGACAGGAC+AGG | 0.522421 | 8:+65241900 | MsG0880045841.01.T01:CDS |
| GGTGGAAATATAATGGCCAT+TGG | 0.522867 | 8:-65242299 | None:intergenic |
| AATATCAGACATTGCAAGGA+AGG | 0.526271 | 8:+65240171 | MsG0880045841.01.T01:CDS |
| TTTCAAACATAAATGGTGTC+GGG | 0.531448 | 8:-65242031 | None:intergenic |
| GTTTCAAACATAAATGGTGT+CGG | 0.534121 | 8:-65242032 | None:intergenic |
| CTCTATATACTCTGCCAGGA+GGG | 0.554032 | 8:+65241928 | MsG0880045841.01.T01:CDS |
| AATATTGTTAAAAGTTTCTG+GGG | 0.556053 | 8:+65239908 | MsG0880045841.01.T01:CDS |
| AAAGTCCTTCAGATGATGCT+TGG | 0.557008 | 8:-65241210 | None:intergenic |
| GGTATCTAAAACAGTGATGA+GGG | 0.560286 | 8:-65241189 | None:intergenic |
| ATTGTCCTTGACTTCTTGGG+AGG | 0.560978 | 8:-65241952 | None:intergenic |
| TTAGCTCTATATACTCTGCC+AGG | 0.562614 | 8:+65241924 | MsG0880045841.01.T01:CDS |
| TTACAATATCAGACATTGCA+AGG | 0.569839 | 8:+65240167 | MsG0880045841.01.T01:CDS |
| TCAGTTTGCTATACTTGATG+AGG | 0.575071 | 8:+65241890 | MsG0880045841.01.T01:CDS |
| TTATCAACTTCAACTGCCAA+TGG | 0.576102 | 8:+65242283 | MsG0880045841.01.T01:CDS |
| GAAGGACTTTCCAGTTTGTG+AGG | 0.579026 | 8:+65241223 | MsG0880045841.01.T01:CDS |
| AGATACCAAGCATCATCTGA+AGG | 0.589155 | 8:+65241205 | MsG0880045841.01.T01:CDS |
| CAACCTACAGAGACTAATGT+TGG | 0.592805 | 8:+65241996 | MsG0880045841.01.T01:CDS |
| AGGGACCTCCCAAGAAGTCA+AGG | 0.602326 | 8:+65241947 | MsG0880045841.01.T01:CDS |
| TGGTATCTAAAACAGTGATG+AGG | 0.610167 | 8:-65241190 | None:intergenic |
| TACTTGATGAGGACAGGACA+GGG | 0.610973 | 8:+65241901 | MsG0880045841.01.T01:CDS |
| GAACCAACATTAGTCTCTGT+AGG | 0.616533 | 8:-65241999 | None:intergenic |
| GACTAGTAAAGCTCATTGAA+GGG | 0.623189 | 8:+65242254 | MsG0880045841.01.T01:CDS |
| TGGCAGTTGAAGTTGATAAG+CGG | 0.676495 | 8:-65242279 | None:intergenic |
| GTATCTAAAACAGTGATGAG+GGG | 0.695546 | 8:-65241188 | None:intergenic |
| GCTCTATATACTCTGCCAGG+AGG | 0.726430 | 8:+65241927 | MsG0880045841.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGTAAAATGAAAATTTGA+TGG | - | Chr8:65241526-65241545 | None:intergenic | 15.0% |
| !!! | TCTATTCAGATTTTTTTAAA+AGG | - | Chr8:65240401-65240420 | None:intergenic | 15.0% |
| !! | AATATTGTTAAAAGTTTCTG+GGG | + | Chr8:65239908-65239927 | MsG0880045841.01.T01:CDS | 20.0% |
| !! | ACAATATTGTTAAAAGTTTC+TGG | + | Chr8:65239906-65239925 | MsG0880045841.01.T01:CDS | 20.0% |
| !! | CAATATTGTTAAAAGTTTCT+GGG | + | Chr8:65239907-65239926 | MsG0880045841.01.T01:CDS | 20.0% |
| !!! | ATTAATTTTCTATAGATACC+TGG | + | Chr8:65241593-65241612 | MsG0880045841.01.T01:intron | 20.0% |
| !!! | TAGAGAAAATAATTTTGTGA+CGG | + | Chr8:65240417-65240436 | MsG0880045841.01.T01:intron | 20.0% |
| ! | AACATCTTCTCAAAGTAAAT+AGG | - | Chr8:65240480-65240499 | None:intergenic | 25.0% |
| ! | AATTCAAGTAACTATCTTGT+AGG | + | Chr8:65241834-65241853 | MsG0880045841.01.T01:intron | 25.0% |
| ! | ACTTCAGTTTCAAACATAAA+TGG | - | Chr8:65242041-65242060 | None:intergenic | 25.0% |
| ! | AGAAACAGATAAATGCATTA+CGG | - | Chr8:65241783-65241802 | None:intergenic | 25.0% |
| ! | ATACATATTTAAGCACCTAA+TGG | - | Chr8:65242083-65242102 | None:intergenic | 25.0% |
| ! | CAGCACAAAACATATAAATA+TGG | + | Chr8:65241043-65241062 | MsG0880045841.01.T01:intron | 25.0% |
| ! | CTGATATTGTAAGATTACTA+TGG | - | Chr8:65240159-65240178 | None:intergenic | 25.0% |
| ! | CTTGTAGTTTATGAATTTAG+TGG | + | Chr8:65241670-65241689 | MsG0880045841.01.T01:intron | 25.0% |
| ! | GTGAAAATAGATAGATAGAT+AGG | - | Chr8:65242145-65242164 | None:intergenic | 25.0% |
| ! | TGTGAATCAAATATTTAGCT+CGG | - | Chr8:65241631-65241650 | None:intergenic | 25.0% |
| ! | TTTCTCCTTGAAAAAATTAG+AGG | - | Chr8:65240914-65240933 | None:intergenic | 25.0% |
| !! | AAAACAAAGTGACATTTTTG+TGG | - | Chr8:65240532-65240551 | None:intergenic | 25.0% |
| !! | AAATTTAGCTCCAAATGATA+TGG | - | Chr8:65241331-65241350 | None:intergenic | 25.0% |
| !! | ATATTGGAGAGATTTTCATA+TGG | - | Chr8:65241160-65241179 | None:intergenic | 25.0% |
| !! | ATGAATCTTGTAGCATTTTA+TGG | + | Chr8:65241130-65241149 | MsG0880045841.01.T01:intron | 25.0% |
| !! | CTTGAAAAAATTAGAGGTTT+TGG | - | Chr8:65240908-65240927 | None:intergenic | 25.0% |
| !! | GTTTGAGAAAATGTTTTTCT+TGG | - | Chr8:65240657-65240676 | None:intergenic | 25.0% |
| !! | TTCTCATATACACTTTGAAA+AGG | + | Chr8:65240605-65240624 | MsG0880045841.01.T01:intron | 25.0% |
| !! | TTTTCAGTACATATGATTTG+TGG | + | Chr8:65240081-65240100 | MsG0880045841.01.T01:intron | 25.0% |
| !!! | CAAAACCTCTAATTTTTTCA+AGG | + | Chr8:65240906-65240925 | MsG0880045841.01.T01:intron | 25.0% |
| !!! | GTTTTTCAATTGTTTCTGAA+TGG | + | Chr8:65241098-65241117 | MsG0880045841.01.T01:intron | 25.0% |
| !!! | TATAGCAAACTGATTTTCAT+TGG | - | Chr8:65241883-65241902 | None:intergenic | 25.0% |
| !!! | TTCTCTGGAATAAATTGTAA+GGG | - | Chr8:65240972-65240991 | None:intergenic | 25.0% |
| AAATGAAGTTGTGCTTTACT+GGG | + | Chr8:65241699-65241718 | MsG0880045841.01.T01:intron | 30.0% | |
| AAATTGAATGAAGTGCAGTA+AGG | - | Chr8:65240311-65240330 | None:intergenic | 30.0% | |
| AATGGCTCAATATGACTATT+TGG | - | Chr8:65240733-65240752 | None:intergenic | 30.0% | |
| ACAATAATACACAGTTGAGT+TGG | - | Chr8:65241571-65241590 | None:intergenic | 30.0% | |
| AGTAAAAGCAGTACAGTAAA+AGG | + | Chr8:65241748-65241767 | MsG0880045841.01.T01:CDS | 30.0% | |
| ATGTCAGATAAAAGAAGCAA+TGG | + | Chr8:65240277-65240296 | MsG0880045841.01.T01:intron | 30.0% | |
| CTAGAAAATTCGCAAGAAAA+GGG | + | Chr8:65240454-65240473 | MsG0880045841.01.T01:intron | 30.0% | |
| GAAACAGATAAATGCATTAC+GGG | - | Chr8:65241782-65241801 | None:intergenic | 30.0% | |
| GTACTGAAAATAGTAAAGTG+CGG | - | Chr8:65240071-65240090 | None:intergenic | 30.0% | |
| GTTTCAAACATAAATGGTGT+CGG | - | Chr8:65242035-65242054 | None:intergenic | 30.0% | |
| TACTGAAAATAGTAAAGTGC+GGG | - | Chr8:65240070-65240089 | None:intergenic | 30.0% | |
| TATATTTCCACCAAAAGTGA+TGG | + | Chr8:65242310-65242329 | MsG0880045841.01.T01:CDS | 30.0% | |
| TTACAATATCAGACATTGCA+AGG | + | Chr8:65240167-65240186 | MsG0880045841.01.T01:CDS | 30.0% | |
| TTTCAAACATAAATGGTGTC+GGG | - | Chr8:65242034-65242053 | None:intergenic | 30.0% | |
| ! | AACTTCTCAAAAGCTTTTCT+AGG | - | Chr8:65240334-65240353 | None:intergenic | 30.0% |
| ! | AGTATTGAAAATGCTTTCTC+TGG | + | Chr8:65242186-65242205 | MsG0880045841.01.T01:intron | 30.0% |
| ! | ATATGATTTGTGGCATAAAG+TGG | + | Chr8:65240091-65240110 | MsG0880045841.01.T01:intron | 30.0% |
| ! | ATCTTGTAGCATTTTATGGA+AGG | + | Chr8:65241134-65241153 | MsG0880045841.01.T01:intron | 30.0% |
| ! | CACTTTTGGTGGAAATATAA+TGG | - | Chr8:65242309-65242328 | None:intergenic | 30.0% |
| !! | CTTCTCTGGAATAAATTGTA+AGG | - | Chr8:65240973-65240992 | None:intergenic | 30.0% |
| !!! | TGACTTTTTTCCATCACTTT+TGG | - | Chr8:65242323-65242342 | None:intergenic | 30.0% |
| AAGAAACGAGATTGTACTTC+AGG | + | Chr8:65242354-65242373 | MsG0880045841.01.T01:CDS | 35.0% | |
| AATATCAGACATTGCAAGGA+AGG | + | Chr8:65240171-65240190 | MsG0880045841.01.T01:CDS | 35.0% | |
| ACTTTGATGTTTGCTTCTCA+TGG | + | Chr8:65242220-65242239 | MsG0880045841.01.T01:CDS | 35.0% | |
| AGAAACCAATTCAAGTCCTT+TGG | + | Chr8:65240929-65240948 | MsG0880045841.01.T01:intron | 35.0% | |
| AGTTCTTCATTATCCATCCA+GGG | + | Chr8:65241369-65241388 | MsG0880045841.01.T01:intron | 35.0% | |
| ATCATTGTCCTTGACTTCTT+GGG | - | Chr8:65241958-65241977 | None:intergenic | 35.0% | |
| CAAATGAAGTTGTGCTTTAC+TGG | + | Chr8:65241698-65241717 | MsG0880045841.01.T01:intron | 35.0% | |
| CCTAGAAAATTCGCAAGAAA+AGG | + | Chr8:65240453-65240472 | MsG0880045841.01.T01:intron | 35.0% | |
| CTACAGGAAGCTCTATAATT+CGG | + | Chr8:65241453-65241472 | MsG0880045841.01.T01:intron | 35.0% | |
| CTTTGATGTTTGCTTCTCAT+GGG | + | Chr8:65242221-65242240 | MsG0880045841.01.T01:CDS | 35.0% | |
| GAAAATACTGATGTACAGAC+AGG | + | Chr8:65241721-65241740 | MsG0880045841.01.T01:intron | 35.0% | |
| GAAACCAATTCAAGTCCTTT+GGG | + | Chr8:65240930-65240949 | MsG0880045841.01.T01:intron | 35.0% | |
| GACTAGTAAAGCTCATTGAA+GGG | + | Chr8:65242254-65242273 | MsG0880045841.01.T01:CDS | 35.0% | |
| TAATTGAGCACAAGTTACAG+AGG | - | Chr8:65240041-65240060 | None:intergenic | 35.0% | |
| TAGAATGCTAAACTAGCTCA+AGG | - | Chr8:65240368-65240387 | None:intergenic | 35.0% | |
| TATCATTGTCCTTGACTTCT+TGG | - | Chr8:65241959-65241978 | None:intergenic | 35.0% | |
| TCTATAGATACCTGGAAATG+TGG | + | Chr8:65241601-65241620 | MsG0880045841.01.T01:intron | 35.0% | |
| TGAGCTTTACTAGTCCAATT+TGG | - | Chr8:65242249-65242268 | None:intergenic | 35.0% | |
| TGGATGGATAATGAAGAACT+CGG | - | Chr8:65241369-65241388 | None:intergenic | 35.0% | |
| TTATCAACTTCAACTGCCAA+TGG | + | Chr8:65242283-65242302 | MsG0880045841.01.T01:CDS | 35.0% | |
| ! | AAGGAAAGCTTGGATTTTCA+AGG | - | Chr8:65240817-65240836 | None:intergenic | 35.0% |
| ! | AGGAAAGCTTGGATTTTCAA+GGG | - | Chr8:65240816-65240835 | None:intergenic | 35.0% |
| ! | CCTTTTCTTGCGAATTTTCT+AGG | - | Chr8:65240456-65240475 | None:intergenic | 35.0% |
| ! | GCTTCTTTTATCTGACATTC+CGG | - | Chr8:65240275-65240294 | None:intergenic | 35.0% |
| ! | GGTATCTAAAACAGTGATGA+GGG | - | Chr8:65241192-65241211 | None:intergenic | 35.0% |
| ! | GTATCTAAAACAGTGATGAG+GGG | - | Chr8:65241191-65241210 | None:intergenic | 35.0% |
| ! | TGGTATCTAAAACAGTGATG+AGG | - | Chr8:65241193-65241212 | None:intergenic | 35.0% |
| !! | ACTAATGTTGGTTCAATTCG+TGG | + | Chr8:65242008-65242027 | MsG0880045841.01.T01:CDS | 35.0% |
| !! | TATGGATGGATTGAACCTTA+TGG | + | Chr8:65241399-65241418 | MsG0880045841.01.T01:intron | 35.0% |
| !! | TCAGTTTGCTATACTTGATG+AGG | + | Chr8:65241890-65241909 | MsG0880045841.01.T01:CDS | 35.0% |
| !!! | CTTTTTTCCATCACTTTTGG+TGG | - | Chr8:65242320-65242339 | None:intergenic | 35.0% |
| AAAATGAAATGCAGACCCCT+TGG | - | Chr8:65239969-65239988 | None:intergenic | 40.0% | |
| AAAGTCCTTCAGATGATGCT+TGG | - | Chr8:65241213-65241232 | None:intergenic | 40.0% | |
| AAATGAAATGCAGACCCCTT+GGG | - | Chr8:65239968-65239987 | None:intergenic | 40.0% | |
| AACTAATGATCCTAGTACCC+AGG | - | Chr8:65239945-65239964 | None:intergenic | 40.0% | |
| ACTAGGATCATTAGTTCCCA+AGG | + | Chr8:65239949-65239968 | MsG0880045841.01.T01:intron | 40.0% | |
| AGATACCAAGCATCATCTGA+AGG | + | Chr8:65241205-65241224 | MsG0880045841.01.T01:CDS | 40.0% | |
| ATTCCGGTTTATACTAGCAC+AGG | - | Chr8:65240259-65240278 | None:intergenic | 40.0% | |
| CAACCTACAGAGACTAATGT+TGG | + | Chr8:65241996-65242015 | MsG0880045841.01.T01:CDS | 40.0% | |
| CATCCTGTGCTAGTATAAAC+CGG | + | Chr8:65240253-65240272 | MsG0880045841.01.T01:intron | 40.0% | |
| CTAGGATCATTAGTTCCCAA+GGG | + | Chr8:65239950-65239969 | MsG0880045841.01.T01:intron | 40.0% | |
| CTGGGTCAGATATTATCTAC+AGG | + | Chr8:65241437-65241456 | MsG0880045841.01.T01:intron | 40.0% | |
| GAGTTCTTCATTATCCATCC+AGG | + | Chr8:65241368-65241387 | MsG0880045841.01.T01:intron | 40.0% | |
| GCCATCTCTATACTACATGT+GGG | - | Chr8:65240787-65240806 | None:intergenic | 40.0% | |
| GGCTCAATATGACTATTTGG+AGG | - | Chr8:65240730-65240749 | None:intergenic | 40.0% | |
| GGTGGAAATATAATGGCCAT+TGG | - | Chr8:65242302-65242321 | None:intergenic | 40.0% | |
| TAATATCTGACCCAGACGAA+AGG | - | Chr8:65241432-65241451 | None:intergenic | 40.0% | |
| TAGGATCATTAGTTCCCAAG+GGG | + | Chr8:65239951-65239970 | MsG0880045841.01.T01:intron | 40.0% | |
| TATGGTAGAAAACAGAGCAG+TGG | + | Chr8:65241061-65241080 | MsG0880045841.01.T01:intron | 40.0% | |
| TCCCACATGTAGTATAGAGA+TGG | + | Chr8:65240783-65240802 | MsG0880045841.01.T01:intron | 40.0% | |
| TGCCATCTCTATACTACATG+TGG | - | Chr8:65240788-65240807 | None:intergenic | 40.0% | |
| TTAGCTCCAAATGATATGGC+TGG | - | Chr8:65241327-65241346 | None:intergenic | 40.0% | |
| TTGCTATACTTGATGAGGAC+AGG | + | Chr8:65241895-65241914 | MsG0880045841.01.T01:CDS | 40.0% | |
| TTGTTCTACTGCAACTTCTC+TGG | - | Chr8:65240987-65241006 | None:intergenic | 40.0% | |
| ! | AGAGAATTTTGTCTGCCCAA+AGG | - | Chr8:65240948-65240967 | None:intergenic | 40.0% |
| ! | CGTATCTTTTCTACGCCATT+AGG | + | Chr8:65242065-65242084 | MsG0880045841.01.T01:CDS | 40.0% |
| ! | GAACCAACATTAGTCTCTGT+AGG | - | Chr8:65242002-65242021 | None:intergenic | 40.0% |
| ! | GGACTAGTAAAGCTCATTGA+AGG | + | Chr8:65242253-65242272 | MsG0880045841.01.T01:CDS | 40.0% |
| ! | TGATTCTGGAAAGGAAAGCT+TGG | - | Chr8:65240827-65240846 | None:intergenic | 40.0% |
| !! | TGGCAGTTGAAGTTGATAAG+CGG | - | Chr8:65242282-65242301 | None:intergenic | 40.0% |
| !! | TTAGCTCTATATACTCTGCC+AGG | + | Chr8:65241924-65241943 | MsG0880045841.01.T01:CDS | 40.0% |
| ACGAAAGGCTATGTGCCATA+AGG | - | Chr8:65241417-65241436 | None:intergenic | 45.0% | |
| ATACTTGATGAGGACAGGAC+AGG | + | Chr8:65241900-65241919 | MsG0880045841.01.T01:CDS | 45.0% | |
| ATTGTCCTTGACTTCTTGGG+AGG | - | Chr8:65241955-65241974 | None:intergenic | 45.0% | |
| CACGATCATACCTCACAAAC+TGG | - | Chr8:65241236-65241255 | None:intergenic | 45.0% | |
| CAGTTTGTGAGGTATGATCG+TGG | + | Chr8:65241234-65241253 | MsG0880045841.01.T01:intron | 45.0% | |
| CCAAATGATATGGCTGGCAT+AGG | - | Chr8:65241321-65241340 | None:intergenic | 45.0% | |
| CCTATGCCAGCCATATCATT+TGG | + | Chr8:65241318-65241337 | MsG0880045841.01.T01:intron | 45.0% | |
| CTCAGATTGTCTGCTGTGAA+TGG | - | Chr8:65240751-65240770 | None:intergenic | 45.0% | |
| CTCTATATACTCTGCCAGGA+GGG | + | Chr8:65241928-65241947 | MsG0880045841.01.T01:CDS | 45.0% | |
| GAAGGACTTTCCAGTTTGTG+AGG | + | Chr8:65241223-65241242 | MsG0880045841.01.T01:CDS | 45.0% | |
| GCTTCTCATGGGAACCAAAT+TGG | + | Chr8:65242232-65242251 | MsG0880045841.01.T01:CDS | 45.0% | |
| GGTCGAGATGCAGCATTTAT+TGG | + | Chr8:65241855-65241874 | MsG0880045841.01.T01:intron | 45.0% | |
| TACTTGATGAGGACAGGACA+GGG | + | Chr8:65241901-65241920 | MsG0880045841.01.T01:CDS | 45.0% | |
| TCCATATAGAATGCCCTGGA+TGG | - | Chr8:65241385-65241404 | None:intergenic | 45.0% | |
| TCCATCCATATAGAATGCCC+TGG | - | Chr8:65241389-65241408 | None:intergenic | 45.0% | |
| TCTGCCCAAAGGACTTGAAT+TGG | - | Chr8:65240937-65240956 | None:intergenic | 45.0% | |
| TGATCTCTGGTGTCTGATTC+TGG | - | Chr8:65240841-65240860 | None:intergenic | 45.0% | |
| TGCATCTAATCCTGGGTACT+AGG | + | Chr8:65239932-65239951 | MsG0880045841.01.T01:intron | 45.0% | |
| ! | TCCAGGGCATTCTATATGGA+TGG | + | Chr8:65241385-65241404 | MsG0880045841.01.T01:intron | 45.0% |
| ! | TCCATCCAGGGCATTCTATA+TGG | + | Chr8:65241381-65241400 | MsG0880045841.01.T01:intron | 45.0% |
| ! | TCTGGTGTCTGATTCTGGAA+AGG | - | Chr8:65240836-65240855 | None:intergenic | 45.0% |
| !!! | TTTATTTTTAAATTTTTTAC+AGG | + | Chr8:65240551-65240570 | MsG0880045841.01.T01:intron | 5.0% |
| AAACAGAGCAGTGGAGTGAG+AGG | + | Chr8:65241070-65241089 | MsG0880045841.01.T01:intron | 50.0% | |
| ATGAGGGGCAAGCGTGATAT+TGG | - | Chr8:65241176-65241195 | None:intergenic | 50.0% | |
| ATGGCACATAGCCTTTCGTC+TGG | + | Chr8:65241418-65241437 | MsG0880045841.01.T01:intron | 50.0% | |
| GCTCTATATACTCTGCCAGG+AGG | + | Chr8:65241927-65241946 | MsG0880045841.01.T01:CDS | 50.0% | |
| GCTCTGTCTTTGCTGATCTC+TGG | - | Chr8:65240854-65240873 | None:intergenic | 50.0% | |
| GGCATAGGATATGCAGTGTC+AGG | - | Chr8:65241306-65241325 | None:intergenic | 50.0% | |
| TGGCACATAGCCTTTCGTCT+GGG | + | Chr8:65241419-65241438 | MsG0880045841.01.T01:intron | 50.0% | |
| AGGGACCTCCCAAGAAGTCA+AGG | + | Chr8:65241947-65241966 | MsG0880045841.01.T01:CDS | 55.0% | |
| CTGGGGCTGCATCTAATCCT+GGG | + | Chr8:65239925-65239944 | MsG0880045841.01.T01:CDS | 55.0% | |
| GCTCGGTACTCCACATTTCC+AGG | - | Chr8:65241614-65241633 | None:intergenic | 55.0% | |
| ! | TCTGGGGCTGCATCTAATCC+TGG | + | Chr8:65239924-65239943 | MsG0880045841.01.T01:CDS | 55.0% |
| ACTTCTTGGGAGGTCCCTCC+TGG | - | Chr8:65241945-65241964 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 65239888 | 65242381 | 65239888 | ID=MsG0880045841.01;Name=MsG0880045841.01 |
| Chr8 | mRNA | 65239888 | 65242381 | 65239888 | ID=MsG0880045841.01.T01;Parent=MsG0880045841.01;Name=MsG0880045841.01.T01;_AED=0.48;_eAED=0.53;_QI=0|0.6|0.5|1|0.2|0.33|6|0|213 |
| Chr8 | exon | 65239888 | 65239946 | 65239888 | ID=MsG0880045841.01.T01:exon:24805;Parent=MsG0880045841.01.T01 |
| Chr8 | exon | 65240156 | 65240207 | 65240156 | ID=MsG0880045841.01.T01:exon:24806;Parent=MsG0880045841.01.T01 |
| Chr8 | exon | 65241143 | 65241244 | 65241143 | ID=MsG0880045841.01.T01:exon:24807;Parent=MsG0880045841.01.T01 |
| Chr8 | exon | 65241739 | 65241769 | 65241739 | ID=MsG0880045841.01.T01:exon:24808;Parent=MsG0880045841.01.T01 |
| Chr8 | exon | 65241856 | 65242086 | 65241856 | ID=MsG0880045841.01.T01:exon:24809;Parent=MsG0880045841.01.T01 |
| Chr8 | exon | 65242215 | 65242381 | 65242215 | ID=MsG0880045841.01.T01:exon:24810;Parent=MsG0880045841.01.T01 |
| Chr8 | CDS | 65239888 | 65239946 | 65239888 | ID=MsG0880045841.01.T01:cds;Parent=MsG0880045841.01.T01 |
| Chr8 | CDS | 65240156 | 65240207 | 65240156 | ID=MsG0880045841.01.T01:cds;Parent=MsG0880045841.01.T01 |
| Chr8 | CDS | 65241143 | 65241244 | 65241143 | ID=MsG0880045841.01.T01:cds;Parent=MsG0880045841.01.T01 |
| Chr8 | CDS | 65241739 | 65241769 | 65241739 | ID=MsG0880045841.01.T01:cds;Parent=MsG0880045841.01.T01 |
| Chr8 | CDS | 65241856 | 65242086 | 65241856 | ID=MsG0880045841.01.T01:cds;Parent=MsG0880045841.01.T01 |
| Chr8 | CDS | 65242215 | 65242381 | 65242215 | ID=MsG0880045841.01.T01:cds;Parent=MsG0880045841.01.T01 |
| Gene Sequence |
| Protein sequence |
