AlfalfaGEDB | MsG0880045841.01

M. sativa cultivar ZhongmuNo.1 / MsG0880045841.01

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045841.01.T01	MCH88508.1	93.793	145	9	0	69	213	24	168	3.90E-94	282

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045841.01.T01	A0A392MPD7	93.793	145	9	0	69	213	24	168	1.86e-94	282

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047793.01	MsG0880045841.01	0.849238	3.675830e-60	6.924893e-57
MsG0080048374.01	MsG0880045841.01	0.900315	8.282366e-78	1.065147e-73
MsG0080048602.01	MsG0880045841.01	0.862928	3.579020e-64	1.066212e-60
MsG0080048763.01	MsG0880045841.01	0.813899	2.026400e-51	1.339969e-48
MsG0180000146.01	MsG0880045841.01	0.839031	2.020132e-57	2.755074e-54
MsG0180000741.01	MsG0880045841.01	0.811359	7.284656e-51	4.499518e-48
MsG0180002072.01	MsG0880045841.01	0.814400	1.570614e-51	1.052829e-48
MsG0180003303.01	MsG0880045841.01	0.823623	1.253645e-53	1.085132e-50
MsG0180003928.01	MsG0880045841.01	0.852309	5.025375e-61	1.045816e-57
MsG0180003937.01	MsG0880045841.01	0.852916	3.372759e-61	7.158896e-58

Showing 1 to 10 of 85 entries

Previous1 2 3 4 5…9Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045841.01.T01	MTR_8g079820	98.601	143	2	0	71	213	545	687	1.79e-90	290
MsG0880045841.01.T01	MTR_8g079820	98.077	52	1	0	20	71	401	452	2.52e-29	115
MsG0880045841.01.T01	MTR_5g017810	77.703	148	29	1	70	213	544	691	6.79e-68	221
MsG0880045841.01.T01	MTR_5g017810	78.846	52	11	0	20	71	401	452	1.42e-20	89.7

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045841.01.T01	AT3G50590	62.857	140	50	1	74	213	547	684	3.06e-52	181
MsG0880045841.01.T01	AT3G50590	80.769	52	10	0	20	71	400	451	3.67e-22	94.4
MsG0880045841.01.T01	AT3G50590	62.590	139	50	1	74	212	547	683	1.28e-51	179
MsG0880045841.01.T01	AT3G50590	80.769	52	10	0	20	71	400	451	4.24e-22	94.4

Showing 1 to 4 of 4 entries

Previous1Next

Find 47 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCCTTCAGATGATGCT+TGG	0.557008	8:-65241210	None:intergenic
AAGAAACGAGATTGTACTTC+AGG	0.358950	8:+65242354	MsG0880045841.01.T01:CDS
AATATCAGACATTGCAAGGA+AGG	0.526271	8:+65240171	MsG0880045841.01.T01:CDS
AATATTGTTAAAAGTTTCTG+GGG	0.556053	8:+65239908	MsG0880045841.01.T01:CDS
ACAATATTGTTAAAAGTTTC+TGG	0.188443	8:+65239906	MsG0880045841.01.T01:CDS
ACTAATGTTGGTTCAATTCG+TGG	0.505333	8:+65242008	MsG0880045841.01.T01:CDS
ACTTCAGTTTCAAACATAAA+TGG	0.253441	8:-65242038	None:intergenic
ACTTCTTGGGAGGTCCCTCC+TGG	0.363491	8:-65241942	None:intergenic
ACTTTGATGTTTGCTTCTCA+TGG	0.368063	8:+65242220	MsG0880045841.01.T01:CDS
AGATACCAAGCATCATCTGA+AGG	0.589155	8:+65241205	MsG0880045841.01.T01:CDS

Showing 1 to 10 of 47 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAAGTTGTGCTTTACT+GGG	+	Chr8:65241699-65241718	MsG0880045841.01.T01:intron	30.0%
AAATTGAATGAAGTGCAGTA+AGG	-	Chr8:65240311-65240330	None:intergenic	30.0%
AATGGCTCAATATGACTATT+TGG	-	Chr8:65240733-65240752	None:intergenic	30.0%
ACAATAATACACAGTTGAGT+TGG	-	Chr8:65241571-65241590	None:intergenic	30.0%
AGTAAAAGCAGTACAGTAAA+AGG	+	Chr8:65241748-65241767	MsG0880045841.01.T01:CDS	30.0%
ATGTCAGATAAAAGAAGCAA+TGG	+	Chr8:65240277-65240296	MsG0880045841.01.T01:intron	30.0%
CTAGAAAATTCGCAAGAAAA+GGG	+	Chr8:65240454-65240473	MsG0880045841.01.T01:intron	30.0%
GAAACAGATAAATGCATTAC+GGG	-	Chr8:65241782-65241801	None:intergenic	30.0%
GTACTGAAAATAGTAAAGTG+CGG	-	Chr8:65240071-65240090	None:intergenic	30.0%
GTTTCAAACATAAATGGTGT+CGG	-	Chr8:65242035-65242054	None:intergenic	30.0%

Showing 1 to 10 of 146 entries

Previous1 2 3 4 5…15Next

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	65239888	65242381	65239888	ID=MsG0880045841.01;Name=MsG0880045841.01
Chr8	mRNA	65239888	65242381	65239888	ID=MsG0880045841.01.T01;Parent=MsG0880045841.01;Name=MsG0880045841.01.T01;_AED=0.48;_eAED=0.53;_QI=0\|0.6\|0.5\|1\|0.2\|0.33\|6\|0\|213
Chr8	exon	65239888	65239946	65239888	ID=MsG0880045841.01.T01:exon:24805;Parent=MsG0880045841.01.T01
Chr8	exon	65240156	65240207	65240156	ID=MsG0880045841.01.T01:exon:24806;Parent=MsG0880045841.01.T01
Chr8	exon	65241143	65241244	65241143	ID=MsG0880045841.01.T01:exon:24807;Parent=MsG0880045841.01.T01
Chr8	exon	65241739	65241769	65241739	ID=MsG0880045841.01.T01:exon:24808;Parent=MsG0880045841.01.T01
Chr8	exon	65241856	65242086	65241856	ID=MsG0880045841.01.T01:exon:24809;Parent=MsG0880045841.01.T01
Chr8	exon	65242215	65242381	65242215	ID=MsG0880045841.01.T01:exon:24810;Parent=MsG0880045841.01.T01
Chr8	CDS	65239888	65239946	65239888	ID=MsG0880045841.01.T01:cds;Parent=MsG0880045841.01.T01
Chr8	CDS	65240156	65240207	65240156	ID=MsG0880045841.01.T01:cds;Parent=MsG0880045841.01.T01
Chr8	CDS	65241143	65241244	65241143	ID=MsG0880045841.01.T01:cds;Parent=MsG0880045841.01.T01
Chr8	CDS	65241739	65241769	65241739	ID=MsG0880045841.01.T01:cds;Parent=MsG0880045841.01.T01
Chr8	CDS	65241856	65242086	65241856	ID=MsG0880045841.01.T01:cds;Parent=MsG0880045841.01.T01
Chr8	CDS	65242215	65242381	65242215	ID=MsG0880045841.01.T01:cds;Parent=MsG0880045841.01.T01

Gene Sequence

>MsG0880045841.01.T01

ATGGGGTTTATTTGCAACACAATATTGTTAAAAGTTTCTGGGGCTGCATCTAATCCTGGCCATAGTAATCTTACAATATCAGACATTGCAAGGAAGGCATTTCTTTACAGTCATTTTATGGAAGGCCATATGAAAATCTCTCCAATATCACGCTTGCCCCTCATCACTGTTTTAGATACCAAGCATCATCTGAAGGACTTTCCAGTTTGTGAGACAGGAAACAGTAAAAGCAGTACAGTAAAAGGTCGAGATGCAGCATTTATTGGTTCCAATGAAAATCAGTTTGCTATACTTGATGAGGACAGGACAGGGTTAGCTCTATATACTCTGCCAGGAGGGACCTCCCAAGAAGTCAAGGACAATGATAAAGTTCTTGAAGAAAATCAACCTACAGAGACTAATGTTGGTTCAATTCGTGGCCCGACACCATTTATGTTTGAAACTGAAGTTGATCGTATCTTTTCTACGCCATTAGATTCTACTTTGATGTTTGCTTCTCATGGGAACCAAATTGGACTAGTAAAGCTCATTGAAGGGTACCGCTTATCAACTTCAACTGCCAATGGCCATTATATTTCCACCAAAAGTGATGGAAAAAAGTCAATTAAGTTAAAAAGAAACGAGATTGTACTTCAGGTATGA

Protein sequence

>MsG0880045841.01.T01

MGFICNTILLKVSGAASNPGHSNLTISDIARKAFLYSHFMEGHMKISPISRLPLITVLDTKHHLKDFPVCETGNSKSSTVKGRDAAFIGSNENQFAILDEDRTGLALYTLPGGTSQEVKDNDKVLEENQPTETNVGSIRGPTPFMFETEVDRIFSTPLDSTLMFASHGNQIGLVKLIEGYRLSTSTANGHYISTKSDGKKSIKLKRNEIVLQV*