Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029149.01.T01 | XP_003616573.1 | 100 | 54 | 0 | 0 | 1 | 54 | 1 | 54 | 4.40E-28 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029149.01.T01 | O04200 | 79.63 | 54 | 11 | 0 | 1 | 54 | 1 | 54 | 1.51E-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029149.01.T01 | G7KBX5 | 100.000 | 54 | 0 | 0 | 1 | 54 | 1 | 54 | 2.10e-28 | 115 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048602.01 | MsG0580029149.01 | 0.811774 | 5.918509e-51 | 3.696183e-48 |
| MsG0080048763.01 | MsG0580029149.01 | 0.807770 | 4.297061e-50 | 2.414143e-47 |
| MsG0080049136.01 | MsG0580029149.01 | 0.800367 | 1.490248e-48 | 6.926629e-46 |
| MsG0180000196.01 | MsG0580029149.01 | 0.833207 | 6.089628e-56 | 6.964774e-53 |
| MsG0180000300.01 | MsG0580029149.01 | 0.845191 | 4.736317e-59 | 7.830386e-56 |
| MsG0180000401.01 | MsG0580029149.01 | 0.831933 | 1.260468e-55 | 1.388193e-52 |
| MsG0180000555.01 | MsG0580029149.01 | 0.821731 | 3.455327e-53 | 2.834311e-50 |
| MsG0180000741.01 | MsG0580029149.01 | 0.820317 | 7.312180e-53 | 5.766257e-50 |
| MsG0180001294.01 | MsG0580029149.01 | 0.801539 | 8.586372e-49 | 4.110969e-46 |
| MsG0180001911.01 | MsG0580029149.01 | 0.803252 | 3.808962e-49 | 1.904969e-46 |
| MsG0180002074.01 | MsG0580029149.01 | 0.848784 | 4.915309e-60 | 9.122574e-57 |
| MsG0180003303.01 | MsG0580029149.01 | 0.801498 | 8.753869e-49 | 4.186944e-46 |
| MsG0180003411.01 | MsG0580029149.01 | 0.811671 | 6.228850e-51 | 3.879237e-48 |
| MsG0180003928.01 | MsG0580029149.01 | 0.858761 | 6.597027e-63 | 1.702197e-59 |
| MsG0180003937.01 | MsG0580029149.01 | 0.876149 | 1.756505e-68 | 8.424845e-65 |
| MsG0180004139.01 | MsG0580029149.01 | 0.859074 | 5.319769e-63 | 1.387242e-59 |
| MsG0180004598.01 | MsG0580029149.01 | 0.818753 | 1.662651e-52 | 1.255430e-49 |
| MsG0180004730.01 | MsG0580029149.01 | 0.810947 | 8.947827e-51 | 5.467949e-48 |
| MsG0180004989.01 | MsG0580029149.01 | 0.828775 | 7.454869e-55 | 7.482192e-52 |
| MsG0180005026.01 | MsG0580029149.01 | 0.803331 | 3.668651e-49 | 1.838480e-46 |
| MsG0180005419.01 | MsG0580029149.01 | 0.817635 | 2.976647e-52 | 2.179448e-49 |
| MsG0180005504.01 | MsG0580029149.01 | 0.826187 | 3.112143e-54 | 2.897941e-51 |
| MsG0180005559.01 | MsG0580029149.01 | 0.844472 | 7.402592e-59 | 1.196362e-55 |
| MsG0180005846.01 | MsG0580029149.01 | 0.852120 | 5.684238e-61 | 1.175814e-57 |
| MsG0180006023.01 | MsG0580029149.01 | 0.828639 | 8.038573e-55 | 8.036782e-52 |
| MsG0180006235.01 | MsG0580029149.01 | 0.822650 | 2.114547e-53 | 1.780663e-50 |
| MsG0180006260.01 | MsG0580029149.01 | 0.823257 | 1.526378e-53 | 1.307552e-50 |
| MsG0280006425.01 | MsG0580029149.01 | 0.833862 | 4.178904e-56 | 4.874446e-53 |
| MsG0280006432.01 | MsG0580029149.01 | 0.817154 | 3.821204e-52 | 2.761245e-49 |
| MsG0280010614.01 | MsG0580029149.01 | 0.812777 | 3.573509e-51 | 2.292377e-48 |
| MsG0280010735.01 | MsG0580029149.01 | 0.850611 | 1.518379e-60 | 2.990930e-57 |
| MsG0280010868.01 | MsG0580029149.01 | 0.801415 | 9.101309e-49 | 4.343933e-46 |
| MsG0280011085.01 | MsG0580029149.01 | 0.858479 | 8.008788e-63 | 2.046961e-59 |
| MsG0280011293.01 | MsG0580029149.01 | 0.805967 | 1.033575e-49 | 5.543158e-47 |
| MsG0280011336.01 | MsG0580029149.01 | 0.844812 | 5.995147e-59 | 9.793695e-56 |
| MsG0380011721.01 | MsG0580029149.01 | 0.840882 | 6.653709e-58 | 9.609460e-55 |
| MsG0380012124.01 | MsG0580029149.01 | 0.805386 | 1.368494e-49 | 7.230348e-47 |
| MsG0480019034.01 | MsG0580029149.01 | 0.805223 | 1.480513e-49 | 7.789420e-47 |
| MsG0480019395.01 | MsG0580029149.01 | 0.891576 | 3.501132e-74 | 3.087395e-70 |
| MsG0480020242.01 | MsG0580029149.01 | 0.802127 | 6.502550e-49 | 3.160022e-46 |
| MsG0480020371.01 | MsG0580029149.01 | 0.826156 | 3.166284e-54 | 2.945633e-51 |
| MsG0480021216.01 | MsG0580029149.01 | 0.815797 | 7.689787e-52 | 5.354453e-49 |
| MsG0480021914.01 | MsG0580029149.01 | 0.833433 | 5.348661e-56 | 6.158736e-53 |
| MsG0480022318.01 | MsG0580029149.01 | 0.815342 | 9.711711e-52 | 6.678186e-49 |
| MsG0480022408.01 | MsG0580029149.01 | 0.820908 | 5.348443e-53 | 4.287753e-50 |
| MsG0480022479.01 | MsG0580029149.01 | 0.843731 | 1.169702e-58 | 1.847088e-55 |
| MsG0480022597.01 | MsG0580029149.01 | 0.815466 | 9.110862e-52 | 6.286753e-49 |
| MsG0480022598.01 | MsG0580029149.01 | 0.822365 | 2.463325e-53 | 2.057659e-50 |
| MsG0480022709.01 | MsG0580029149.01 | 0.804626 | 1.973950e-49 | 1.022690e-46 |
| MsG0480022719.01 | MsG0580029149.01 | 0.848079 | 7.700861e-60 | 1.396705e-56 |
| MsG0480023460.01 | MsG0580029149.01 | 0.842068 | 3.241219e-58 | 4.857310e-55 |
| MsG0480023697.01 | MsG0580029149.01 | 0.816754 | 4.697381e-52 | 3.357443e-49 |
| MsG0480023874.01 | MsG0580029149.01 | 0.813224 | 2.851478e-51 | 1.851233e-48 |
| MsG0580024205.01 | MsG0580029149.01 | 0.840724 | 7.319926e-58 | 1.051969e-54 |
| MsG0580024682.01 | MsG0580029149.01 | 0.841122 | 5.755326e-58 | 8.372874e-55 |
| MsG0580024770.01 | MsG0580029149.01 | 0.821382 | 4.160011e-53 | 3.379034e-50 |
| MsG0580025127.01 | MsG0580029149.01 | 0.824389 | 8.289127e-54 | 7.331452e-51 |
| MsG0580025907.01 | MsG0580029149.01 | 0.800632 | 1.315921e-48 | 6.157596e-46 |
| MsG0380015468.01 | MsG0580029149.01 | 0.812975 | 3.233985e-51 | 2.085503e-48 |
| MsG0380015495.01 | MsG0580029149.01 | 0.879807 | 9.218776e-70 | 5.069793e-66 |
| MsG0380015924.01 | MsG0580029149.01 | 0.813664 | 2.283110e-51 | 1.500144e-48 |
| MsG0380017045.01 | MsG0580029149.01 | 0.833073 | 6.576298e-56 | 7.491778e-53 |
| MsG0380017077.01 | MsG0580029149.01 | 0.803264 | 3.787298e-49 | 1.894712e-46 |
| MsG0380017228.01 | MsG0580029149.01 | 0.816687 | 4.864619e-52 | 3.470405e-49 |
| MsG0380017410.01 | MsG0580029149.01 | 0.851460 | 8.746152e-61 | 1.771477e-57 |
| MsG0380017643.01 | MsG0580029149.01 | 0.827501 | 1.511329e-54 | 1.461685e-51 |
| MsG0380017881.01 | MsG0580029149.01 | 0.810815 | 9.554529e-51 | 5.817672e-48 |
| MsG0380017946.01 | MsG0580029149.01 | 0.850142 | 2.056100e-60 | 3.988488e-57 |
| MsG0480018256.01 | MsG0580029149.01 | 0.850731 | 1.404597e-60 | 2.777844e-57 |
| MsG0580028307.01 | MsG0580029149.01 | 0.808460 | 3.064213e-50 | 1.753111e-47 |
| MsG0580029036.01 | MsG0580029149.01 | 0.805456 | 1.323491e-49 | 7.005317e-47 |
| MsG0580029148.01 | MsG0580029149.01 | 0.805908 | 1.063819e-49 | 5.696501e-47 |
| MsG0580029149.01 | MsG0580029214.01 | 0.808052 | 3.743651e-50 | 2.118825e-47 |
| MsG0580029149.01 | MsG0580029278.01 | 0.800005 | 1.765711e-48 | 8.131555e-46 |
| MsG0580029149.01 | MsG0580030252.01 | 0.810232 | 1.276561e-50 | 7.653168e-48 |
| MsG0580029149.01 | MsG0680030321.01 | 0.803150 | 3.998717e-49 | 1.994655e-46 |
| MsG0580029149.01 | MsG0680030436.01 | 0.823770 | 1.158302e-53 | 1.006867e-50 |
| MsG0580029149.01 | MsG0680035681.01 | 0.860704 | 1.715531e-63 | 4.732759e-60 |
| MsG0580029149.01 | MsG0680035737.01 | 0.821854 | 3.235411e-53 | 2.663443e-50 |
| MsG0580029149.01 | MsG0780036906.01 | 0.824034 | 1.004164e-53 | 8.792395e-51 |
| MsG0580029149.01 | MsG0780037975.01 | 0.806351 | 8.582175e-50 | 4.647736e-47 |
| MsG0580029149.01 | MsG0780039497.01 | 0.827565 | 1.458120e-54 | 1.412804e-51 |
| MsG0580029149.01 | MsG0780039530.01 | 0.813993 | 1.932038e-51 | 1.280796e-48 |
| MsG0580029149.01 | MsG0780039654.01 | 0.842762 | 2.121538e-58 | 3.249073e-55 |
| MsG0580029149.01 | MsG0780039655.01 | 0.811433 | 7.019105e-51 | 4.344333e-48 |
| MsG0580029149.01 | MsG0780039657.01 | 0.808306 | 3.304409e-50 | 1.882883e-47 |
| MsG0580029149.01 | MsG0780039712.01 | 0.841903 | 3.582261e-58 | 5.340438e-55 |
| MsG0580029149.01 | MsG0780040290.01 | 0.809986 | 1.442899e-50 | 8.595549e-48 |
| MsG0580029149.01 | MsG0780040488.01 | 0.837283 | 5.694446e-57 | 7.361454e-54 |
| MsG0580029149.01 | MsG0780040687.01 | 0.819924 | 8.994517e-53 | 7.016397e-50 |
| MsG0580029149.01 | MsG0780041245.01 | 0.809868 | 1.529146e-50 | 9.081006e-48 |
| MsG0580029149.01 | MsG0780041310.01 | 0.862420 | 5.134424e-64 | 1.502826e-60 |
| MsG0580029149.01 | MsG0780041371.01 | 0.800959 | 1.128560e-48 | 5.325021e-46 |
| MsG0580029149.01 | MsG0780041469.01 | 0.829792 | 4.222748e-55 | 4.367347e-52 |
| MsG0580029149.01 | MsG0780041787.01 | 0.800120 | 1.672987e-48 | 7.727168e-46 |
| MsG0580029149.01 | MsG0880042329.01 | 0.836758 | 7.755991e-57 | 9.869284e-54 |
| MsG0580029149.01 | MsG0880042983.01 | 0.817297 | 3.548512e-52 | 2.574154e-49 |
| MsG0580029149.01 | MsG0880043921.01 | 0.875004 | 4.334935e-68 | 1.992568e-64 |
| MsG0580029149.01 | MsG0880044917.01 | 0.836499 | 9.031295e-57 | 1.140167e-53 |
| MsG0580029149.01 | MsG0880045786.01 | 0.812689 | 3.735878e-51 | 2.391156e-48 |
| MsG0580029149.01 | MsG0880046718.01 | 0.803710 | 3.061232e-49 | 1.549064e-46 |
| MsG0580029149.01 | MsG0880046762.01 | 0.806623 | 7.519881e-50 | 4.100646e-47 |
| MsG0580029149.01 | MsG0880047226.01 | 0.805340 | 1.399359e-49 | 7.384681e-47 |
| MsG0580029149.01 | MsG0880047293.01 | 0.880625 | 4.706359e-70 | 2.672719e-66 |
| MsG0280007048.01 | MsG0580029149.01 | 0.812388 | 4.347143e-51 | 2.760378e-48 |
| MsG0280007089.01 | MsG0580029149.01 | 0.806145 | 9.480748e-50 | 5.107639e-47 |
| MsG0280007790.01 | MsG0580029149.01 | 0.820063 | 8.359586e-53 | 6.546727e-50 |
| MsG0280008270.01 | MsG0580029149.01 | 0.803900 | 2.795979e-49 | 1.421877e-46 |
| MsG0280008574.01 | MsG0580029149.01 | 0.806664 | 7.369458e-50 | 4.022901e-47 |
| MsG0280008849.01 | MsG0580029149.01 | 0.804485 | 2.112321e-49 | 1.090403e-46 |
| MsG0280009386.01 | MsG0580029149.01 | 0.837349 | 5.476761e-57 | 7.094247e-54 |
| MsG0280009448.01 | MsG0580029149.01 | 0.804228 | 2.388694e-49 | 1.224948e-46 |
| MsG0280009509.01 | MsG0580029149.01 | 0.806771 | 6.996559e-50 | 3.830040e-47 |
| MsG0280009932.01 | MsG0580029149.01 | 0.840241 | 9.790338e-58 | 1.386110e-54 |
| MsG0280010173.01 | MsG0580029149.01 | 0.826507 | 2.611387e-54 | 2.453858e-51 |
| MsG0280010459.01 | MsG0580029149.01 | 0.806909 | 6.543404e-50 | 3.594754e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029149.01.T01 | MTR_5g081910 | 100.000 | 54 | 0 | 0 | 1 | 54 | 1 | 54 | 5.33e-32 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029149.01.T01 | AT2G39970 | 79.630 | 54 | 11 | 0 | 1 | 54 | 1 | 54 | 1.54e-12 | 63.5 |
Find 34 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACAAATGTGTCAGGTTTA+TGG | 0.125295 | 5:-92910302 | MsG0580029149.01.T01:CDS |
| TTCAGTGTCAACGTTGCGTT+TGG | 0.316611 | 5:+92910731 | None:intergenic |
| ACAAAGATCATGTGATTGTT+TGG | 0.341999 | 5:-92910271 | MsG0580029149.01.T01:CDS |
| GAGGGATGGGAGAGGTTGTA+TGG | 0.373207 | 5:-92909641 | MsG0580029149.01.T01:CDS |
| ATGTCGGACGCTTTGATCAA+TGG | 0.399669 | 5:-92910546 | MsG0580029149.01.T01:CDS |
| AGATTCTTATTGCCCTTCTT+CGG | 0.413495 | 5:+92910335 | None:intergenic |
| TATTGTATGAAGAGAGAAAA+GGG | 0.427241 | 5:+92910647 | None:intergenic |
| GTGATTGTTTGGTTAATGTT+TGG | 0.430938 | 5:-92910260 | MsG0580029149.01.T01:CDS |
| AAGAAGGGCAATAAGAATCT+TGG | 0.440862 | 5:-92910332 | MsG0580029149.01.T01:CDS |
| ATCAATGGATTGGCTGGAGC+TGG | 0.443957 | 5:-92910531 | MsG0580029149.01.T01:CDS |
| GGATTGGCTGGAGCTGGTGG+AGG | 0.464570 | 5:-92910525 | MsG0580029149.01.T01:CDS |
| GCTTTGATCAATGGATTGGC+TGG | 0.469248 | 5:-92910537 | MsG0580029149.01.T01:CDS |
| GGCTTGGCGCCATCACTTGT+CGG | 0.475838 | 5:-92909617 | MsG0580029149.01.T01:CDS |
| GGACGCTTTGATCAATGGAT+TGG | 0.498413 | 5:-92910541 | MsG0580029149.01.T01:CDS |
| AACTGATCGTGATCCGAAGA+AGG | 0.505218 | 5:-92910348 | MsG0580029149.01.T01:CDS |
| GAAAATCATACAGTTTGAAG+AGG | 0.510497 | 5:+92910477 | None:intergenic |
| GGAGAGGTTGTATGGAGGCT+TGG | 0.511587 | 5:-92909633 | MsG0580029149.01.T01:CDS |
| AATGGATTGGCTGGAGCTGG+TGG | 0.518922 | 5:-92910528 | MsG0580029149.01.T01:CDS |
| GGTTGTGAAACAAGAGGGAT+GGG | 0.523770 | 5:-92909654 | MsG0580029149.01.T01:CDS |
| TGTCGGTACAGCTACATCTC+AGG | 0.524615 | 5:-92909600 | MsG0580029149.01.T01:CDS |
| TTTGAAGTAGTTGTTGTACA+TGG | 0.529730 | 5:+92910691 | None:intergenic |
| TCAGTGTCAACGTTGCGTTT+GGG | 0.538749 | 5:+92910732 | None:intergenic |
| AGGTTGTGAAACAAGAGGGA+TGG | 0.541422 | 5:-92909655 | MsG0580029149.01.T01:CDS |
| GTATTGTATGAAGAGAGAAA+AGG | 0.542384 | 5:+92910646 | None:intergenic |
| GGATGGGAGAGGTTGTATGG+AGG | 0.563808 | 5:-92909638 | MsG0580029149.01.T01:CDS |
| TGAAACAAGAGGGATGGGAG+AGG | 0.572625 | 5:-92909649 | MsG0580029149.01.T01:CDS |
| GATTGGCTGGAGCTGGTGGA+GGG | 0.575191 | 5:-92910524 | MsG0580029149.01.T01:CDS |
| AAAATCATACAGTTTGAAGA+GGG | 0.611736 | 5:+92910478 | None:intergenic |
| ACTGATCGTGATCCGAAGAA+GGG | 0.613764 | 5:-92910347 | MsG0580029149.01.T01:CDS |
| TTGGTTAATGTTTGGCCGTG+AGG | 0.638927 | 5:-92910252 | MsG0580029149.01.T01:CDS |
| GTAGCTGTACCGACAAGTGA+TGG | 0.655326 | 5:+92909608 | None:intergenic |
| ATTGTAGGTTGTGAAACAAG+AGG | 0.675879 | 5:-92909660 | MsG0580029149.01.T01:intron |
| AAAACATCCTCAAAACATGT+CGG | 0.676069 | 5:-92910562 | MsG0580029149.01.T01:exon |
| TTGTAGGTTGTGAAACAAGA+GGG | 0.697405 | 5:-92909659 | MsG0580029149.01.T01:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAAAAATCAATTTG+AGG | + | Chr5:92909688-92909707 | None:intergenic | 10.0% |
| !!! | TCTTTTATTTTTGTTATATT+GGG | - | Chr5:92910564-92910583 | MsG0580029149.01.T01:exon | 10.0% |
| !!! | TTCTTTTATTTTTGTTATAT+TGG | - | Chr5:92910563-92910582 | MsG0580029149.01.T01:exon | 10.0% |
| !! | AGTTGAACAATAAATTTAAG+TGG | + | Chr5:92910347-92910366 | None:intergenic | 20.0% |
| !! | GGAAAAAAAAAATCAATTCT+AGG | + | Chr5:92910326-92910345 | None:intergenic | 20.0% |
| !!! | GAAATTTGATAATGGTTTTT+TGG | - | Chr5:92910517-92910536 | MsG0580029149.01.T01:CDS | 20.0% |
| ! | AAAATCATACAGTTTGAAGA+GGG | + | Chr5:92909806-92909825 | None:intergenic | 25.0% |
| ! | AAGGTAAAATGATCTATGTT+TGG | + | Chr5:92910389-92910408 | None:intergenic | 25.0% |
| ! | ACAAAACATACACAGAAAAA+CGG | - | Chr5:92910495-92910514 | MsG0580029149.01.T01:CDS | 25.0% |
| ! | GAAAAACGGAAATTTGATAA+TGG | - | Chr5:92910509-92910528 | MsG0580029149.01.T01:CDS | 25.0% |
| ! | TATTGTATGAAGAGAGAAAA+GGG | + | Chr5:92909637-92909656 | None:intergenic | 25.0% |
| ! | TTAAGTAGAATCAATTCTAG+AGG | - | Chr5:92910184-92910203 | MsG0580029149.01.T01:intron | 25.0% |
| !! | AATTCTGCACATATCAATTT+TGG | - | Chr5:92910455-92910474 | MsG0580029149.01.T01:intron | 25.0% |
| !! | AGTTTCAATCTTTTCTCAAT+TGG | - | Chr5:92909834-92909853 | MsG0580029149.01.T01:intron | 25.0% |
| !! | GTTTCAATCTTTTCTCAATT+GGG | - | Chr5:92909835-92909854 | MsG0580029149.01.T01:intron | 25.0% |
| !! | TCAAAATCAAATTTTCCTCA+CGG | + | Chr5:92910047-92910066 | None:intergenic | 25.0% |
| !!! | TGTATTTTTTGTTCCACTTT+TGG | - | Chr5:92910214-92910233 | MsG0580029149.01.T01:CDS | 25.0% |
| !!! | TTGATTTTGAGTCAATTGTT+TGG | - | Chr5:92910057-92910076 | MsG0580029149.01.T01:intron | 25.0% |
| AAAAACACTGAGCTAAAATG+AGG | + | Chr5:92910710-92910729 | None:intergenic | 30.0% | |
| AAAACATCCTCAAAACATGT+CGG | - | Chr5:92909719-92909738 | MsG0580029149.01.T01:intron | 30.0% | |
| ACAAAGATCATGTGATTGTT+TGG | - | Chr5:92910010-92910029 | MsG0580029149.01.T01:intron | 30.0% | |
| GAAAATCATACAGTTTGAAG+AGG | + | Chr5:92909807-92909826 | None:intergenic | 30.0% | |
| GTATTGTATGAAGAGAGAAA+AGG | + | Chr5:92909638-92909657 | None:intergenic | 30.0% | |
| GTGATTGTTTGGTTAATGTT+TGG | - | Chr5:92910021-92910040 | MsG0580029149.01.T01:intron | 30.0% | |
| TACTTGAAGCTAGAAATCAT+CGG | - | Chr5:92910293-92910312 | MsG0580029149.01.T01:CDS | 30.0% | |
| TCAAGTAGAATCAATTCTAG+TGG | + | Chr5:92910280-92910299 | None:intergenic | 30.0% | |
| ! | AACTTTTCAACAAATGTGTC+AGG | - | Chr5:92909972-92909991 | MsG0580029149.01.T01:intron | 30.0% |
| ! | AAGGGTAGTTTTCAATTACT+TGG | + | Chr5:92909619-92909638 | None:intergenic | 30.0% |
| ! | AGGGTAGTTTTCAATTACTT+GGG | + | Chr5:92909618-92909637 | None:intergenic | 30.0% |
| ! | GATTAGTTGTTTAGTGATTG+TGG | - | Chr5:92910586-92910605 | MsG0580029149.01.T01:five_prime_UTR | 30.0% |
| ! | GTTTTTGTGTTGTGATCTAT+AGG | - | Chr5:92909894-92909913 | MsG0580029149.01.T01:intron | 30.0% |
| ! | TACACCTCAAGAATCAATTT+TGG | + | Chr5:92910245-92910264 | None:intergenic | 30.0% |
| ! | TTTGAAGTAGTTGTTGTACA+TGG | + | Chr5:92909593-92909612 | None:intergenic | 30.0% |
| ! | TTTTTGGACTGAATGAAAGT+TGG | - | Chr5:92910533-92910552 | MsG0580029149.01.T01:CDS | 30.0% |
| !!! | ATTTTTTGTTCCACTTTTGG+AGG | - | Chr5:92910217-92910236 | MsG0580029149.01.T01:CDS | 30.0% |
| !!! | GAGGATGTTTTATTTTTCTC+AGG | + | Chr5:92909669-92909688 | None:intergenic | 30.0% |
| !!! | TCATTTTAGCTCAGTGTTTT+TGG | - | Chr5:92910709-92910728 | MsG0580029149.01.T01:five_prime_UTR | 30.0% |
| AAGAAGGGCAATAAGAATCT+TGG | - | Chr5:92909949-92909968 | MsG0580029149.01.T01:intron | 35.0% | |
| AGATTCTTATTGCCCTTCTT+CGG | + | Chr5:92909949-92909968 | None:intergenic | 35.0% | |
| ATTGTAGGTTGTGAAACAAG+AGG | - | Chr5:92910621-92910640 | MsG0580029149.01.T01:five_prime_UTR | 35.0% | |
| CAACAAATGTGTCAGGTTTA+TGG | - | Chr5:92909979-92909998 | MsG0580029149.01.T01:intron | 35.0% | |
| TGGTTATGTCAATGCATTGT+AGG | - | Chr5:92910606-92910625 | MsG0580029149.01.T01:five_prime_UTR | 35.0% | |
| TTGTAGGTTGTGAAACAAGA+GGG | - | Chr5:92910622-92910641 | MsG0580029149.01.T01:five_prime_UTR | 35.0% | |
| ! | CCTTCAACTCAATTTTAGAC+AGG | - | Chr5:92910405-92910424 | MsG0580029149.01.T01:intron | 35.0% |
| ! | GTATGTTTTGTCTCCACTTT+TGG | + | Chr5:92910486-92910505 | None:intergenic | 35.0% |
| !! | CCTGTCTAAAATTGAGTTGA+AGG | + | Chr5:92910408-92910427 | None:intergenic | 35.0% |
| ! | GGAGCCAAAATTGATTCTTG+AGG | - | Chr5:92910238-92910257 | MsG0580029149.01.T01:CDS | 40.0% |
| !! | TGTTTTGTCTCCACTTTTGG+AGG | + | Chr5:92910483-92910502 | None:intergenic | 40.0% |
| !!! | AATTTTGGCTCCTCCAAAAG+TGG | - | Chr5:92910470-92910489 | MsG0580029149.01.T01:intron | 40.0% |
| !!! | AATTTTGGCTCCTCCAAAAG+TGG | + | Chr5:92910489-92910470 | None:intergenic | 40.0% |
| AACTGATCGTGATCCGAAGA+AGG | - | Chr5:92909933-92909952 | MsG0580029149.01.T01:intron | 45.0% | |
| ACTGATCGTGATCCGAAGAA+GGG | - | Chr5:92909934-92909953 | MsG0580029149.01.T01:intron | 45.0% | |
| AGGTTGTGAAACAAGAGGGA+TGG | - | Chr5:92910626-92910645 | MsG0580029149.01.T01:five_prime_UTR | 45.0% | |
| ATGTCGGACGCTTTGATCAA+TGG | - | Chr5:92909735-92909754 | MsG0580029149.01.T01:intron | 45.0% | |
| GGACGCTTTGATCAATGGAT+TGG | - | Chr5:92909740-92909759 | MsG0580029149.01.T01:intron | 45.0% | |
| GGTTGTGAAACAAGAGGGAT+GGG | - | Chr5:92910627-92910646 | MsG0580029149.01.T01:five_prime_UTR | 45.0% | |
| TTGGTTAATGTTTGGCCGTG+AGG | - | Chr5:92910029-92910048 | MsG0580029149.01.T01:intron | 45.0% | |
| !! | AAAGCGTCCGACATGTTTTG+AGG | + | Chr5:92909729-92909748 | None:intergenic | 45.0% |
| !! | GCTTTGATCAATGGATTGGC+TGG | - | Chr5:92909744-92909763 | MsG0580029149.01.T01:intron | 45.0% |
| TGAAACAAGAGGGATGGGAG+AGG | - | Chr5:92910632-92910651 | MsG0580029149.01.T01:five_prime_UTR | 50.0% | |
| TGTCGGTACAGCTACATCTC+AGG | - | Chr5:92910681-92910700 | MsG0580029149.01.T01:five_prime_UTR | 50.0% | |
| ! | GTAGCTGTACCGACAAGTGA+TGG | + | Chr5:92910676-92910695 | None:intergenic | 50.0% |
| !! | ATCAATGGATTGGCTGGAGC+TGG | - | Chr5:92909750-92909769 | MsG0580029149.01.T01:intron | 50.0% |
| GAGGGATGGGAGAGGTTGTA+TGG | - | Chr5:92910640-92910659 | MsG0580029149.01.T01:five_prime_UTR | 55.0% | |
| GGAGAGGTTGTATGGAGGCT+TGG | - | Chr5:92910648-92910667 | MsG0580029149.01.T01:five_prime_UTR | 55.0% | |
| GGATGGGAGAGGTTGTATGG+AGG | - | Chr5:92910643-92910662 | MsG0580029149.01.T01:five_prime_UTR | 55.0% | |
| !! | AATGGATTGGCTGGAGCTGG+TGG | - | Chr5:92909753-92909772 | MsG0580029149.01.T01:intron | 55.0% |
| GGCTTGGCGCCATCACTTGT+CGG | - | Chr5:92910664-92910683 | MsG0580029149.01.T01:five_prime_UTR | 60.0% | |
| ! | GATTGGCTGGAGCTGGTGGA+GGG | - | Chr5:92909757-92909776 | MsG0580029149.01.T01:intron | 60.0% |
| !! | GGATTGGCTGGAGCTGGTGG+AGG | - | Chr5:92909756-92909775 | MsG0580029149.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 92909551 | 92910752 | 92909551 | ID=MsG0580029149.01;Name=MsG0580029149.01 |
| Chr5 | mRNA | 92909551 | 92910752 | 92909551 | ID=MsG0580029149.01.T01;Parent=MsG0580029149.01;Name=MsG0580029149.01.T01;_AED=0.49;_eAED=0.63;_QI=184|0.5|0.33|1|1|1|3|0|133 |
| Chr5 | exon | 92909551 | 92909675 | 92909551 | ID=MsG0580029149.01.T01:exon:17942;Parent=MsG0580029149.01.T01 |
| Chr5 | exon | 92910192 | 92910387 | 92910192 | ID=MsG0580029149.01.T01:exon:17941;Parent=MsG0580029149.01.T01 |
| Chr5 | exon | 92910488 | 92910752 | 92910488 | ID=MsG0580029149.01.T01:exon:17940;Parent=MsG0580029149.01.T01 |
| Chr5 | five_prime_UTR | 92910569 | 92910752 | 92910569 | ID=MsG0580029149.01.T01:five_prime_utr;Parent=MsG0580029149.01.T01 |
| Chr5 | CDS | 92910488 | 92910568 | 92910488 | ID=MsG0580029149.01.T01:cds;Parent=MsG0580029149.01.T01 |
| Chr5 | CDS | 92910192 | 92910387 | 92910192 | ID=MsG0580029149.01.T01:cds;Parent=MsG0580029149.01.T01 |
| Chr5 | CDS | 92909551 | 92909675 | 92909551 | ID=MsG0580029149.01.T01:cds;Parent=MsG0580029149.01.T01 |
| Gene Sequence |
| Protein sequence |
