AlfalfaGEDB | MsG0580029149.01

M. sativa cultivar ZhongmuNo.1 / MsG0580029149.01

KEGG: K13354
GO: -
PFAM: PF00153

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029149.01.T01	XP_003616573.1	100	54	0	0	1	54	1	54	4.40E-28	115

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029149.01.T01	O04200	79.63	54	11	0	1	54	1	54	1.51E-11	63.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029149.01.T01	G7KBX5	100.000	54	0	0	1	54	1	54	2.10e-28	115

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048602.01	MsG0580029149.01	0.811774	5.918509e-51	3.696183e-48
MsG0080048763.01	MsG0580029149.01	0.807770	4.297061e-50	2.414143e-47
MsG0080049136.01	MsG0580029149.01	0.800367	1.490248e-48	6.926629e-46
MsG0180000196.01	MsG0580029149.01	0.833207	6.089628e-56	6.964774e-53
MsG0180000300.01	MsG0580029149.01	0.845191	4.736317e-59	7.830386e-56
MsG0180000401.01	MsG0580029149.01	0.831933	1.260468e-55	1.388193e-52
MsG0180000555.01	MsG0580029149.01	0.821731	3.455327e-53	2.834311e-50
MsG0180000741.01	MsG0580029149.01	0.820317	7.312180e-53	5.766257e-50
MsG0180001294.01	MsG0580029149.01	0.801539	8.586372e-49	4.110969e-46
MsG0180001911.01	MsG0580029149.01	0.803252	3.808962e-49	1.904969e-46

Showing 1 to 10 of 116 entries

Previous1 2 3 4 5…12Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029149.01.T01	MTR_5g081910	100.000	54	0	0	1	54	1	54	5.33e-32	115

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029149.01.T01	AT2G39970	79.630	54	11	0	1	54	1	54	1.54e-12	63.5

Showing 1 to 1 of 1 entries

Previous1Next

Find 34 sgRNAs with CRISPR-Local

Find 70 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATCCTCAAAACATGT+CGG	0.676069	5:-92910562	MsG0580029149.01.T01:exon
AAAATCATACAGTTTGAAGA+GGG	0.611736	5:+92910478	None:intergenic
AACTGATCGTGATCCGAAGA+AGG	0.505218	5:-92910348	MsG0580029149.01.T01:CDS
AAGAAGGGCAATAAGAATCT+TGG	0.440862	5:-92910332	MsG0580029149.01.T01:CDS
AATGGATTGGCTGGAGCTGG+TGG	0.518922	5:-92910528	MsG0580029149.01.T01:CDS
ACAAAGATCATGTGATTGTT+TGG	0.341999	5:-92910271	MsG0580029149.01.T01:CDS
ACTGATCGTGATCCGAAGAA+GGG	0.613764	5:-92910347	MsG0580029149.01.T01:CDS
AGATTCTTATTGCCCTTCTT+CGG	0.413495	5:+92910335	None:intergenic
AGGTTGTGAAACAAGAGGGA+TGG	0.541422	5:-92909655	MsG0580029149.01.T01:CDS
ATCAATGGATTGGCTGGAGC+TGG	0.443957	5:-92910531	MsG0580029149.01.T01:CDS

Showing 1 to 10 of 34 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACACTGAGCTAAAATG+AGG	+	Chr5:92910710-92910729	None:intergenic	30.0%
AAAACATCCTCAAAACATGT+CGG	-	Chr5:92909719-92909738	MsG0580029149.01.T01:intron	30.0%
ACAAAGATCATGTGATTGTT+TGG	-	Chr5:92910010-92910029	MsG0580029149.01.T01:intron	30.0%
GAAAATCATACAGTTTGAAG+AGG	+	Chr5:92909807-92909826	None:intergenic	30.0%
GTATTGTATGAAGAGAGAAA+AGG	+	Chr5:92909638-92909657	None:intergenic	30.0%
GTGATTGTTTGGTTAATGTT+TGG	-	Chr5:92910021-92910040	MsG0580029149.01.T01:intron	30.0%
TACTTGAAGCTAGAAATCAT+CGG	-	Chr5:92910293-92910312	MsG0580029149.01.T01:CDS	30.0%
TCAAGTAGAATCAATTCTAG+TGG	+	Chr5:92910280-92910299	None:intergenic	30.0%
AAGAAGGGCAATAAGAATCT+TGG	-	Chr5:92909949-92909968	MsG0580029149.01.T01:intron	35.0%
AGATTCTTATTGCCCTTCTT+CGG	+	Chr5:92909949-92909968	None:intergenic	35.0%

Showing 1 to 10 of 70 entries

Previous1 2 3 4 5 6 7Next

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	92909551	92910752	92909551	ID=MsG0580029149.01;Name=MsG0580029149.01
Chr5	mRNA	92909551	92910752	92909551	ID=MsG0580029149.01.T01;Parent=MsG0580029149.01;Name=MsG0580029149.01.T01;_AED=0.49;_eAED=0.63;_QI=184\|0.5\|0.33\|1\|1\|1\|3\|0\|133
Chr5	exon	92909551	92909675	92909551	ID=MsG0580029149.01.T01:exon:17942;Parent=MsG0580029149.01.T01
Chr5	exon	92910192	92910387	92910192	ID=MsG0580029149.01.T01:exon:17941;Parent=MsG0580029149.01.T01
Chr5	exon	92910488	92910752	92910488	ID=MsG0580029149.01.T01:exon:17940;Parent=MsG0580029149.01.T01
Chr5	five_prime_UTR	92910569	92910752	92910569	ID=MsG0580029149.01.T01:five_prime_utr;Parent=MsG0580029149.01.T01
Chr5	CDS	92910488	92910568	92910488	ID=MsG0580029149.01.T01:cds;Parent=MsG0580029149.01.T01
Chr5	CDS	92910192	92910387	92910192	ID=MsG0580029149.01.T01:cds;Parent=MsG0580029149.01.T01
Chr5	CDS	92909551	92909675	92909551	ID=MsG0580029149.01.T01:cds;Parent=MsG0580029149.01.T01

Gene Sequence

>MsG0580029149.01.T01

ATGTCGGACGCTTTGATCAATGGATTGGCTGGAGCTGGTGGAGGGATCATTGCTCAACTTATTACATACCCTCTTCAAACTGTGAATACTCGTCAACAAACTGATCGTGATCCGAAGAAGGGCAATAAGAATCTTGGAACTTTTCAACAAATGTGTCAGGTTTATGGCTTTTTTAACAAAGATCATGTGATTGTTTGGTTAATGTTTGGCCGTGAGGAAAATTTGATTTTGAGTCAATTGTTTGGTAAAAGTGATTTATGTTTGAATACATTTAAATGTTGTGAAACAAGAGGGATGGGAGAGGTTGTATGGAGGCTTGGCGCCATCACTTGTCGGTACAGCTACATCTCAGGTGACCTCATTTTAGCTCAGTGTTTTTGGAGATATGTGATTTTTGAGTAA

Protein sequence

>MsG0580029149.01.T01

MSDALINGLAGAGGGIIAQLITYPLQTVNTRQQTDRDPKKGNKNLGTFQQMCQVYGFFNKDHVIVWLMFGREENLILSQLFGKSDLCLNTFKCCETRGMGEVVWRLGAITCRYSYISGDLILAQCFWRYVIFE*