Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009158.01.T01 | XP_039686514.1 | 89.189 | 407 | 23 | 2 | 1 | 406 | 1 | 387 | 0 | 730 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009158.01.T01 | Q9FG14 | 53.535 | 99 | 46 | 0 | 21 | 119 | 76 | 174 | 2.59E-23 | 105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009158.01.T01 | A0A396JC32 | 89.189 | 407 | 23 | 2 | 1 | 406 | 1 | 387 | 0.0 | 730 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080049076.01 | MsG0280009158.01 | -0.801229 | 9.934596e-49 | 4.719503e-46 |
| MsG0180000930.01 | MsG0280009158.01 | 0.803267 | 3.782255e-49 | 1.892319e-46 |
| MsG0180005959.01 | MsG0280009158.01 | 0.805458 | 1.321876e-49 | 6.997233e-47 |
| MsG0280006403.01 | MsG0280009158.01 | 0.812341 | 4.451374e-51 | 2.822998e-48 |
| MsG0280007759.01 | MsG0280009158.01 | 0.830549 | 2.759144e-55 | 2.916202e-52 |
| MsG0280007760.01 | MsG0280009158.01 | 0.819082 | 1.399976e-52 | 1.066729e-49 |
| MsG0280009158.01 | MsG0380011638.01 | 0.804858 | 1.765698e-49 | 9.203772e-47 |
| MsG0280009158.01 | MsG0380013945.01 | -0.810156 | 1.326198e-50 | 7.935064e-48 |
| MsG0280009158.01 | MsG0380014032.01 | -0.812380 | 4.365711e-51 | 2.771490e-48 |
| MsG0280009158.01 | MsG0480019106.01 | 0.815464 | 9.123036e-52 | 6.294679e-49 |
| MsG0280009158.01 | MsG0680035842.01 | 0.816068 | 6.692057e-52 | 4.694258e-49 |
| MsG0280009158.01 | MsG0780039924.01 | 0.816807 | 4.571563e-52 | 3.272108e-49 |
| MsG0280009158.01 | MsG0780040480.01 | 0.838465 | 2.829992e-57 | 3.793677e-54 |
| MsG0280009158.01 | MsG0880042810.01 | 0.809538 | 1.800528e-50 | 1.059977e-47 |
| MsG0280009158.01 | MsG0880043824.01 | 0.826402 | 2.767320e-54 | 2.592608e-51 |
| MsG0280009158.01 | MsG0880044669.01 | 0.816147 | 6.422367e-52 | 4.514829e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009158.01.T01 | MTR_4g130400 | 48.718 | 468 | 186 | 14 | 12 | 435 | 2 | 459 | 1.04e-111 | 336 |
| MsG0280009158.01.T01 | MTR_1g054835 | 52.525 | 99 | 47 | 0 | 21 | 119 | 67 | 165 | 1.06e-19 | 91.7 |
| MsG0280009158.01.T01 | MTR_7g107000 | 50.485 | 103 | 51 | 0 | 17 | 119 | 68 | 170 | 4.02e-18 | 86.7 |
| MsG0280009158.01.T01 | MTR_4g093150 | 42.683 | 82 | 47 | 0 | 34 | 115 | 91 | 172 | 7.27e-14 | 70.9 |
| MsG0280009158.01.T01 | MTR_1g070350 | 46.512 | 86 | 46 | 0 | 27 | 112 | 541 | 626 | 5.38e-13 | 71.6 |
| MsG0280009158.01.T01 | MTR_0168s0060 | 44.340 | 106 | 59 | 0 | 13 | 118 | 328 | 433 | 9.37e-12 | 67.4 |
| MsG0280009158.01.T01 | MTR_5g078300 | 45.205 | 73 | 40 | 0 | 22 | 94 | 623 | 695 | 4.64e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009158.01.T01 | AT5G57830 | 34.253 | 435 | 204 | 10 | 18 | 435 | 18 | 387 | 3.25e-45 | 161 |
| MsG0280009158.01.T01 | AT4G30830 | 28.000 | 425 | 211 | 14 | 23 | 435 | 22 | 363 | 4.24e-30 | 120 |
| MsG0280009158.01.T01 | AT4G30830 | 28.000 | 425 | 211 | 14 | 23 | 435 | 22 | 363 | 4.24e-30 | 120 |
| MsG0280009158.01.T01 | AT5G06560 | 53.535 | 99 | 46 | 0 | 21 | 119 | 76 | 174 | 2.64e-24 | 105 |
| MsG0280009158.01.T01 | AT2G24140 | 56.667 | 90 | 39 | 0 | 30 | 119 | 30 | 119 | 8.03e-24 | 101 |
| MsG0280009158.01.T01 | AT2G24140 | 56.667 | 90 | 39 | 0 | 30 | 119 | 30 | 119 | 8.03e-24 | 101 |
| MsG0280009158.01.T01 | AT3G54740 | 49.000 | 100 | 51 | 0 | 21 | 120 | 28 | 127 | 1.19e-22 | 99.4 |
| MsG0280009158.01.T01 | AT3G54740 | 49.000 | 100 | 51 | 0 | 21 | 120 | 28 | 127 | 1.19e-22 | 99.4 |
| MsG0280009158.01.T01 | AT3G54740 | 49.000 | 100 | 51 | 0 | 21 | 120 | 28 | 127 | 1.19e-22 | 99.4 |
| MsG0280009158.01.T01 | AT3G54740 | 49.000 | 100 | 51 | 0 | 21 | 120 | 28 | 127 | 1.19e-22 | 99.4 |
| MsG0280009158.01.T01 | AT3G54740 | 49.495 | 99 | 50 | 0 | 21 | 119 | 76 | 174 | 1.82e-22 | 99.8 |
| MsG0280009158.01.T01 | AT3G54740 | 49.495 | 99 | 50 | 0 | 21 | 119 | 76 | 174 | 1.82e-22 | 99.8 |
| MsG0280009158.01.T01 | AT3G54740 | 49.495 | 99 | 50 | 0 | 21 | 119 | 76 | 174 | 1.82e-22 | 99.8 |
| MsG0280009158.01.T01 | AT3G54740 | 49.495 | 99 | 50 | 0 | 21 | 119 | 76 | 174 | 1.82e-22 | 99.8 |
| MsG0280009158.01.T01 | AT2G24140 | 55.882 | 68 | 30 | 0 | 52 | 119 | 1 | 68 | 1.55e-16 | 79.7 |
| MsG0280009158.01.T01 | AT2G24140 | 55.882 | 68 | 30 | 0 | 52 | 119 | 1 | 68 | 1.55e-16 | 79.7 |
| MsG0280009158.01.T01 | AT3G11850 | 40.000 | 100 | 60 | 0 | 21 | 120 | 67 | 166 | 2.68e-16 | 81.3 |
| MsG0280009158.01.T01 | AT3G11850 | 40.000 | 100 | 60 | 0 | 21 | 120 | 67 | 166 | 2.68e-16 | 81.3 |
| MsG0280009158.01.T01 | AT5G16720 | 44.792 | 96 | 53 | 0 | 21 | 116 | 362 | 457 | 4.82e-16 | 80.9 |
| MsG0280009158.01.T01 | AT1G74830 | 43.878 | 98 | 52 | 1 | 23 | 120 | 309 | 403 | 4.26e-13 | 71.6 |
| MsG0280009158.01.T01 | AT1G70750 | 41.935 | 93 | 54 | 0 | 23 | 115 | 420 | 512 | 7.43e-13 | 71.2 |
| MsG0280009158.01.T01 | AT2G30690 | 36.752 | 117 | 70 | 1 | 2 | 114 | 595 | 711 | 5.53e-12 | 68.6 |
| MsG0280009158.01.T01 | AT2G30690 | 36.752 | 117 | 70 | 1 | 2 | 114 | 595 | 711 | 5.53e-12 | 68.6 |
| MsG0280009158.01.T01 | AT1G08800 | 42.045 | 88 | 51 | 0 | 27 | 114 | 901 | 988 | 7.87e-11 | 65.1 |
| MsG0280009158.01.T01 | AT1G08800 | 42.045 | 88 | 51 | 0 | 27 | 114 | 901 | 988 | 7.87e-11 | 65.1 |
| MsG0280009158.01.T01 | AT1G08800 | 42.045 | 88 | 51 | 0 | 27 | 114 | 901 | 988 | 7.87e-11 | 65.1 |
| MsG0280009158.01.T01 | AT1G08800 | 42.045 | 88 | 51 | 0 | 27 | 114 | 901 | 988 | 7.87e-11 | 65.1 |
Find 85 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAACTGAATTCATGCTTTC+CGG | 0.220677 | 2:+46547812 | None:intergenic |
| ATCTCTCAAGTTTCAATTAC+AGG | 0.220907 | 2:-46548366 | MsG0280009158.01.T01:CDS |
| TCGGCTTCAGCTCAAGTTTC+GGG | 0.243418 | 2:-46548158 | MsG0280009158.01.T01:CDS |
| AACAGGCAATGTTGCACTTT+TGG | 0.247496 | 2:-46547158 | MsG0280009158.01.T01:intron |
| GTCGGCTTCAGCTCAAGTTT+CGG | 0.295430 | 2:-46548159 | MsG0280009158.01.T01:CDS |
| TAGAGTTTAATTTGTTTGTT+TGG | 0.305441 | 2:+46547946 | None:intergenic |
| ATCACATGTGGCTTTGAATC+AGG | 0.318662 | 2:-46547546 | MsG0280009158.01.T01:CDS |
| ATTTACTACTTCATATGAAT+TGG | 0.365872 | 2:+46547923 | None:intergenic |
| GGAGCAAACTTGAGAAATAA+AGG | 0.378910 | 2:-46548026 | MsG0280009158.01.T01:CDS |
| GGGATAAGAAAGATTGAGAA+AGG | 0.429965 | 2:-46547783 | MsG0280009158.01.T01:CDS |
| CACACACCAAGCTAGGTTCC+TGG | 0.440723 | 2:+46548132 | None:intergenic |
| AGAGAAGGCCGTGGTGGAGA+TGG | 0.444054 | 2:-46548492 | MsG0280009158.01.T01:CDS |
| GTTTCAATTACAGGCTTACA+AGG | 0.445734 | 2:-46548357 | MsG0280009158.01.T01:CDS |
| AGCTCAAGTTTCGGGTGACC+AGG | 0.450393 | 2:-46548150 | MsG0280009158.01.T01:CDS |
| TCATGCTTTCCGGTGGCTTG+TGG | 0.451364 | 2:+46547822 | None:intergenic |
| CACAGCAGCAAGAGAAGCAA+TGG | 0.454545 | 2:-46548537 | MsG0280009158.01.T01:CDS |
| CATTGCTTCTCTTGCTGCTG+TGG | 0.454872 | 2:+46548538 | None:intergenic |
| CAAATACAAGTGATCAAAAC+GGG | 0.455981 | 2:-46548277 | MsG0280009158.01.T01:CDS |
| CCTAGCTTGGTGTGTGGAAG+TGG | 0.458814 | 2:-46548125 | MsG0280009158.01.T01:CDS |
| AAAGGCAGAGAGCTAGTAGA+AGG | 0.462861 | 2:-46547578 | MsG0280009158.01.T01:CDS |
| AAAAGCTTCGAGGGTGGCTT+CGG | 0.467471 | 2:+46548424 | None:intergenic |
| AAGGACAAACTTGTGAGCTT+AGG | 0.472100 | 2:-46548338 | MsG0280009158.01.T01:CDS |
| AGAAGTGATGTATCAGTAGT+AGG | 0.476141 | 2:-46548641 | MsG0280009158.01.T01:CDS |
| GTGGAACTCTAGATTCATAC+TGG | 0.479508 | 2:-46548106 | MsG0280009158.01.T01:CDS |
| GGCAAGTCAGTTCAAGAGAA+TGG | 0.479526 | 2:-46548468 | MsG0280009158.01.T01:CDS |
| ATGATCAGAAAATGCTGTAC+TGG | 0.490392 | 2:+46547881 | None:intergenic |
| GCAGAAGTTGTATGTGGAGT+TGG | 0.490581 | 2:-46548582 | MsG0280009158.01.T01:CDS |
| CCACTTCCACACACCAAGCT+AGG | 0.505953 | 2:+46548125 | None:intergenic |
| TCAAATACAAGTGATCAAAA+CGG | 0.506951 | 2:-46548278 | MsG0280009158.01.T01:CDS |
| AAGATGATCAGAGAATTGTT+AGG | 0.508161 | 2:-46547605 | MsG0280009158.01.T01:CDS |
| AAAGTTCTTCAAAAGCTTCG+AGG | 0.515841 | 2:+46548414 | None:intergenic |
| AGAGAATTGTTAGGCTTCAA+AGG | 0.519776 | 2:-46547596 | MsG0280009158.01.T01:CDS |
| ATTTCAGATTCGAACAACAT+AGG | 0.531169 | 2:-46548047 | MsG0280009158.01.T01:CDS |
| AAGGGAACGGTGACTATCGC+TGG | 0.532087 | 2:-46547669 | MsG0280009158.01.T01:CDS |
| GAGAGAGTGTTGATCGGAAG+GGG | 0.534648 | 2:-46548190 | MsG0280009158.01.T01:CDS |
| TGTGGAGTTGGATGAGGAAA+GGG | 0.535394 | 2:-46548570 | MsG0280009158.01.T01:CDS |
| GAGAGAGAGTGTTGATCGGA+AGG | 0.543095 | 2:-46548192 | MsG0280009158.01.T01:CDS |
| GGATAAGAAAGATTGAGAAA+GGG | 0.546363 | 2:-46547782 | MsG0280009158.01.T01:CDS |
| AGAATCTGTGTCTGAGGGAA+TGG | 0.546439 | 2:-46547727 | MsG0280009158.01.T01:CDS |
| GTTGTATGTGGAGTTGGATG+AGG | 0.547907 | 2:-46548576 | MsG0280009158.01.T01:CDS |
| AAAACTAGAATCTGTGTCTG+AGG | 0.548604 | 2:-46547733 | MsG0280009158.01.T01:CDS |
| AGAATGGCAGAAGAGAAGAT+AGG | 0.553739 | 2:-46548452 | MsG0280009158.01.T01:CDS |
| AAGTAGTAAATTGTTGTGAA+AGG | 0.554566 | 2:-46547911 | MsG0280009158.01.T01:CDS |
| AAGTTCTTCAAAAGCTTCGA+GGG | 0.555984 | 2:+46548415 | None:intergenic |
| TCACATGTGGCTTTGAATCA+GGG | 0.558091 | 2:-46547545 | MsG0280009158.01.T01:CDS |
| GGGTGACCAGGAACCTAGCT+TGG | 0.562082 | 2:-46548138 | MsG0280009158.01.T01:CDS |
| ACATGATGCAGACAAGGGAA+AGG | 0.564199 | 2:-46547688 | MsG0280009158.01.T01:CDS |
| TTTGAAGTTCCACAAGCCAC+CGG | 0.566411 | 2:-46547831 | MsG0280009158.01.T01:CDS |
| AGAGAGTGTTGATCGGAAGG+GGG | 0.566867 | 2:-46548189 | MsG0280009158.01.T01:CDS |
| GACATGATACTGCGTTTACA+AGG | 0.572241 | 2:-46548515 | MsG0280009158.01.T01:CDS |
| CATGATGCAGACAAGGGAAA+GGG | 0.573658 | 2:-46547687 | MsG0280009158.01.T01:CDS |
| ATGAATTCAGTTATAACGAA+GGG | 0.578647 | 2:-46547803 | MsG0280009158.01.T01:CDS |
| CTTCGAGGGTGGCTTCGGCA+TGG | 0.580049 | 2:+46548429 | None:intergenic |
| TGGCCAGAAGAAAGAAAAGA+TGG | 0.580704 | 2:-46547649 | MsG0280009158.01.T01:CDS |
| CTCTGAGAGAGAGTGTTGAT+CGG | 0.584888 | 2:-46548196 | MsG0280009158.01.T01:CDS |
| GAAGGCCGTGGTGGAGATGG+AGG | 0.588348 | 2:-46548489 | MsG0280009158.01.T01:CDS |
| TTCTTCAAAAGCTTCGAGGG+TGG | 0.594607 | 2:+46548418 | None:intergenic |
| AGAGAGAGTGTTGATCGGAA+GGG | 0.599941 | 2:-46548191 | MsG0280009158.01.T01:CDS |
| CACAACATCATCCACAGCGG+TGG | 0.602686 | 2:+46547431 | None:intergenic |
| AAACTAGAATCTGTGTCTGA+GGG | 0.604202 | 2:-46547732 | MsG0280009158.01.T01:CDS |
| CATGAATTCAGTTATAACGA+AGG | 0.609607 | 2:-46547804 | MsG0280009158.01.T01:CDS |
| ATGTGGAGTTGGATGAGGAA+AGG | 0.609938 | 2:-46548571 | MsG0280009158.01.T01:CDS |
| GGTATGGTGAAGAGCAGTTG+AGG | 0.614053 | 2:-46547524 | MsG0280009158.01.T01:CDS |
| TTTAAACATGATGCAGACAA+GGG | 0.615907 | 2:-46547693 | MsG0280009158.01.T01:CDS |
| TGTGGCTTTGAATCAGGGTA+TGG | 0.617321 | 2:-46547540 | MsG0280009158.01.T01:CDS |
| ACTGCGTTTACAAGGAGAGA+AGG | 0.621148 | 2:-46548507 | MsG0280009158.01.T01:CDS |
| TCAACACTCTCTCTCAGAGT+CGG | 0.622731 | 2:+46548200 | None:intergenic |
| TGCAGACAAGGGAAAGGGAA+CGG | 0.623024 | 2:-46547682 | MsG0280009158.01.T01:CDS |
| ACGGGAGCACGGTTATGAGA+AGG | 0.624797 | 2:-46548259 | MsG0280009158.01.T01:CDS |
| AGTAAGATAAACTCTGAATG+TGG | 0.625640 | 2:-46547969 | MsG0280009158.01.T01:CDS |
| ATCAGAAAATGCTGTACTGG+CGG | 0.628541 | 2:+46547884 | None:intergenic |
| TCAGAAAATGCTGTACTGGC+GGG | 0.628906 | 2:+46547885 | None:intergenic |
| AAGTGATCAAAACGGGAGCA+CGG | 0.633691 | 2:-46548270 | MsG0280009158.01.T01:CDS |
| GCAAACTTGAGAAATAAAGG+AGG | 0.645182 | 2:-46548023 | MsG0280009158.01.T01:CDS |
| ACTGAATTCATGCTTTCCGG+TGG | 0.646451 | 2:+46547815 | None:intergenic |
| GATTGAGAAAGGGAATTCTG+TGG | 0.656309 | 2:-46547772 | MsG0280009158.01.T01:CDS |
| AGGTATCATGACATCACATG+TGG | 0.668252 | 2:-46547558 | MsG0280009158.01.T01:CDS |
| ACAAGGAGAGAAGGCCGTGG+TGG | 0.673361 | 2:-46548498 | MsG0280009158.01.T01:CDS |
| ACTTGAGAAATAAAGGAGGG+AGG | 0.674685 | 2:-46548019 | MsG0280009158.01.T01:CDS |
| TTTACAAGGAGAGAAGGCCG+TGG | 0.679375 | 2:-46548501 | MsG0280009158.01.T01:CDS |
| CAGGAACCTAGCTTGGTGTG+TGG | 0.684270 | 2:-46548131 | MsG0280009158.01.T01:CDS |
| CAAACTTGAGAAATAAAGGA+GGG | 0.690446 | 2:-46548022 | MsG0280009158.01.T01:CDS |
| ACTTGCCTCCATCTCCACCA+CGG | 0.700252 | 2:+46548484 | None:intergenic |
| TGTATCAGTAGTAGGCGCGA+CGG | 0.705304 | 2:-46548633 | MsG0280009158.01.T01:CDS |
| AGACACAACATCATCCACAG+CGG | 0.826275 | 2:+46547428 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAATTAAAAAAAATTCA+TGG | + | Chr2:46548499-46548518 | None:intergenic | 10.0% |
| !! | CAAGAATTCATAAAAAAAAA+GGG | + | Chr2:46548583-46548602 | None:intergenic | 15.0% |
| !! | TCAAGAATTCATAAAAAAAA+AGG | + | Chr2:46548584-46548603 | None:intergenic | 15.0% |
| !!! | ATTAGTTCTTATTATTTCAA+AGG | + | Chr2:46548631-46548650 | None:intergenic | 15.0% |
| !! | AATGACTAATTTATATGAAC+AGG | - | Chr2:46548648-46548667 | MsG0280009158.01.T01:CDS | 20.0% |
| !! | ATTTACTACTTCATATGAAT+TGG | + | Chr2:46547903-46547922 | None:intergenic | 20.0% |
| !! | TTCTTATTATTTCAAAGGAA+AGG | + | Chr2:46548626-46548645 | None:intergenic | 20.0% |
| !! | TTTATGAATTCTTGAATTGT+TGG | - | Chr2:46548589-46548608 | MsG0280009158.01.T01:CDS | 20.0% |
| !!! | TAGAGTTTAATTTGTTTGTT+TGG | + | Chr2:46547880-46547899 | None:intergenic | 20.0% |
| ! | AAGAGGTAATGTATATAATC+TGG | - | Chr2:46548431-46548450 | MsG0280009158.01.T01:CDS | 25.0% |
| ! | AAGTAGTAAATTGTTGTGAA+AGG | - | Chr2:46547912-46547931 | MsG0280009158.01.T01:CDS | 25.0% |
| ! | AGATTATATACATTACCTCT+TGG | + | Chr2:46548432-46548451 | None:intergenic | 25.0% |
| ! | ATGAATTCAGTTATAACGAA+GGG | - | Chr2:46548020-46548039 | MsG0280009158.01.T01:CDS | 25.0% |
| ! | TCAAATACAAGTGATCAAAA+CGG | - | Chr2:46547545-46547564 | MsG0280009158.01.T01:CDS | 25.0% |
| AAAAATTCATGGATGCATGT+AGG | + | Chr2:46548488-46548507 | None:intergenic | 30.0% | |
| AAGATGATCAGAGAATTGTT+AGG | - | Chr2:46548218-46548237 | MsG0280009158.01.T01:CDS | 30.0% | |
| AGTAAGATAAACTCTGAATG+TGG | - | Chr2:46547854-46547873 | MsG0280009158.01.T01:CDS | 30.0% | |
| ATAACTGAATTCATGCTTTC+CGG | + | Chr2:46548014-46548033 | None:intergenic | 30.0% | |
| ATCTCTCAAGTTTCAATTAC+AGG | - | Chr2:46547457-46547476 | MsG0280009158.01.T01:CDS | 30.0% | |
| ATTTCAGATTCGAACAACAT+AGG | - | Chr2:46547776-46547795 | MsG0280009158.01.T01:CDS | 30.0% | |
| CAAACTTGAGAAATAAAGGA+GGG | - | Chr2:46547801-46547820 | MsG0280009158.01.T01:CDS | 30.0% | |
| CAAATACAAGTGATCAAAAC+GGG | - | Chr2:46547546-46547565 | MsG0280009158.01.T01:CDS | 30.0% | |
| CATGAATTCAGTTATAACGA+AGG | - | Chr2:46548019-46548038 | MsG0280009158.01.T01:CDS | 30.0% | |
| GGATAAGAAAGATTGAGAAA+GGG | - | Chr2:46548041-46548060 | MsG0280009158.01.T01:CDS | 30.0% | |
| TTTAAACATGATGCAGACAA+GGG | - | Chr2:46548130-46548149 | MsG0280009158.01.T01:CDS | 30.0% | |
| ! | AATCCATCTTTTCTTTCTTC+TGG | + | Chr2:46548180-46548199 | None:intergenic | 30.0% |
| ! | ACTTTTGTACGAAAAAGAGA+TGG | - | Chr2:46547427-46547446 | MsG0280009158.01.T01:CDS | 30.0% |
| ! | TTTTAAACATGATGCAGACA+AGG | - | Chr2:46548129-46548148 | MsG0280009158.01.T01:CDS | 30.0% |
| !!! | AATCTTTTTAAAGCGAATCG+GGG | + | Chr2:46547603-46547622 | None:intergenic | 30.0% |
| !!! | GAATCTTTTTAAAGCGAATC+GGG | + | Chr2:46547604-46547623 | None:intergenic | 30.0% |
| !!! | GGAATCTTTTTAAAGCGAAT+CGG | + | Chr2:46547605-46547624 | None:intergenic | 30.0% |
| AAAACTAGAATCTGTGTCTG+AGG | - | Chr2:46548090-46548109 | MsG0280009158.01.T01:CDS | 35.0% | |
| AAACTAGAATCTGTGTCTGA+GGG | - | Chr2:46548091-46548110 | MsG0280009158.01.T01:CDS | 35.0% | |
| AAAGTTCTTCAAAAGCTTCG+AGG | + | Chr2:46547412-46547431 | None:intergenic | 35.0% | |
| AAGTTCTTCAAAAGCTTCGA+GGG | + | Chr2:46547411-46547430 | None:intergenic | 35.0% | |
| AGAAGTGATGTATCAGTAGT+AGG | - | Chr2:46547182-46547201 | MsG0280009158.01.T01:intron | 35.0% | |
| AGAGAATTGTTAGGCTTCAA+AGG | - | Chr2:46548227-46548246 | MsG0280009158.01.T01:CDS | 35.0% | |
| ATGATCAGAAAATGCTGTAC+TGG | + | Chr2:46547945-46547964 | None:intergenic | 35.0% | |
| GCAAACTTGAGAAATAAAGG+AGG | - | Chr2:46547800-46547819 | MsG0280009158.01.T01:CDS | 35.0% | |
| GGAGCAAACTTGAGAAATAA+AGG | - | Chr2:46547797-46547816 | MsG0280009158.01.T01:CDS | 35.0% | |
| GGGATAAGAAAGATTGAGAA+AGG | - | Chr2:46548040-46548059 | MsG0280009158.01.T01:CDS | 35.0% | |
| GTTTCAATTACAGGCTTACA+AGG | - | Chr2:46547466-46547485 | MsG0280009158.01.T01:CDS | 35.0% | |
| ! | ACTTTTGCAGAAGTTGTATG+TGG | - | Chr2:46547235-46547254 | MsG0280009158.01.T01:intron | 35.0% |
| ! | GTCTTTTGAATTTCTCCAAG+AGG | - | Chr2:46548414-46548433 | MsG0280009158.01.T01:CDS | 35.0% |
| !!! | ATCTTTTTAAAGCGAATCGG+GGG | + | Chr2:46547602-46547621 | None:intergenic | 35.0% |
| AAGGACAAACTTGTGAGCTT+AGG | - | Chr2:46547485-46547504 | MsG0280009158.01.T01:CDS | 40.0% | |
| ACTTGAGAAATAAAGGAGGG+AGG | - | Chr2:46547804-46547823 | MsG0280009158.01.T01:CDS | 40.0% | |
| AGAATGGCAGAAGAGAAGAT+AGG | - | Chr2:46547371-46547390 | MsG0280009158.01.T01:intron | 40.0% | |
| AGGTATCATGACATCACATG+TGG | - | Chr2:46548265-46548284 | MsG0280009158.01.T01:CDS | 40.0% | |
| ATCAGAAAATGCTGTACTGG+CGG | + | Chr2:46547942-46547961 | None:intergenic | 40.0% | |
| GACATGATACTGCGTTTACA+AGG | - | Chr2:46547308-46547327 | MsG0280009158.01.T01:intron | 40.0% | |
| GATTGAGAAAGGGAATTCTG+TGG | - | Chr2:46548051-46548070 | MsG0280009158.01.T01:CDS | 40.0% | |
| GTGGAACTCTAGATTCATAC+TGG | - | Chr2:46547717-46547736 | MsG0280009158.01.T01:CDS | 40.0% | |
| TGGCCAGAAGAAAGAAAAGA+TGG | - | Chr2:46548174-46548193 | MsG0280009158.01.T01:CDS | 40.0% | |
| ! | AACAGGCAATGTTGCACTTT+TGG | - | Chr2:46548665-46548684 | MsG0280009158.01.T01:CDS | 40.0% |
| !! | ATCACATGTGGCTTTGAATC+AGG | - | Chr2:46548277-46548296 | MsG0280009158.01.T01:CDS | 40.0% |
| !! | TCACATGTGGCTTTGAATCA+GGG | - | Chr2:46548278-46548297 | MsG0280009158.01.T01:CDS | 40.0% |
| AAAGGCAGAGAGCTAGTAGA+AGG | - | Chr2:46548245-46548264 | MsG0280009158.01.T01:CDS | 45.0% | |
| AAGTGATCAAAACGGGAGCA+CGG | - | Chr2:46547553-46547572 | MsG0280009158.01.T01:CDS | 45.0% | |
| ACATGATGCAGACAAGGGAA+AGG | - | Chr2:46548135-46548154 | MsG0280009158.01.T01:CDS | 45.0% | |
| ACTGAATTCATGCTTTCCGG+TGG | + | Chr2:46548011-46548030 | None:intergenic | 45.0% | |
| ACTGCGTTTACAAGGAGAGA+AGG | - | Chr2:46547316-46547335 | MsG0280009158.01.T01:intron | 45.0% | |
| AGAATCTGTGTCTGAGGGAA+TGG | - | Chr2:46548096-46548115 | MsG0280009158.01.T01:CDS | 45.0% | |
| AGACACAACATCATCCACAG+CGG | + | Chr2:46548398-46548417 | None:intergenic | 45.0% | |
| ATGTGGAGTTGGATGAGGAA+AGG | - | Chr2:46547252-46547271 | MsG0280009158.01.T01:intron | 45.0% | |
| CATGATGCAGACAAGGGAAA+GGG | - | Chr2:46548136-46548155 | MsG0280009158.01.T01:CDS | 45.0% | |
| CATGGATGCATGTAGGCAAT+AGG | + | Chr2:46548481-46548500 | None:intergenic | 45.0% | |
| GCAGAAGTTGTATGTGGAGT+TGG | - | Chr2:46547241-46547260 | MsG0280009158.01.T01:intron | 45.0% | |
| GGCAAGTCAGTTCAAGAGAA+TGG | - | Chr2:46547355-46547374 | MsG0280009158.01.T01:intron | 45.0% | |
| GTTGTATGTGGAGTTGGATG+AGG | - | Chr2:46547247-46547266 | MsG0280009158.01.T01:intron | 45.0% | |
| TCAACACTCTCTCTCAGAGT+CGG | + | Chr2:46547626-46547645 | None:intergenic | 45.0% | |
| TGTGGAGTTGGATGAGGAAA+GGG | - | Chr2:46547253-46547272 | MsG0280009158.01.T01:intron | 45.0% | |
| TTCTTCAAAAGCTTCGAGGG+TGG | + | Chr2:46547408-46547427 | None:intergenic | 45.0% | |
| ! | AGAGCAGTTGAGGCTTTTGA+AGG | - | Chr2:46548309-46548328 | MsG0280009158.01.T01:CDS | 45.0% |
| ! | TCAGAAAATGCTGTACTGGC+GGG | + | Chr2:46547941-46547960 | None:intergenic | 45.0% |
| ! | TTTGAAGTTCCACAAGCCAC+CGG | - | Chr2:46547992-46548011 | MsG0280009158.01.T01:CDS | 45.0% |
| !! | AGAGAGAGTGTTGATCGGAA+GGG | - | Chr2:46547632-46547651 | MsG0280009158.01.T01:CDS | 45.0% |
| !! | CTCTGAGAGAGAGTGTTGAT+CGG | - | Chr2:46547627-46547646 | MsG0280009158.01.T01:CDS | 45.0% |
| !! | TGTGGCTTTGAATCAGGGTA+TGG | - | Chr2:46548283-46548302 | MsG0280009158.01.T01:CDS | 45.0% |
| AAAAGCTTCGAGGGTGGCTT+CGG | + | Chr2:46547402-46547421 | None:intergenic | 50.0% | |
| AACCAAAAAGTCCACCGCTG+TGG | - | Chr2:46548381-46548400 | MsG0280009158.01.T01:CDS | 50.0% | |
| ACTAAAGCTCCCGTATACGC+AGG | + | Chr2:46548549-46548568 | None:intergenic | 50.0% | |
| CACAGCAGCAAGAGAAGCAA+TGG | - | Chr2:46547286-46547305 | MsG0280009158.01.T01:intron | 50.0% | |
| CATTGCTTCTCTTGCTGCTG+TGG | + | Chr2:46547288-46547307 | None:intergenic | 50.0% | |
| CTAAAGCTCCCGTATACGCA+GGG | + | Chr2:46548548-46548567 | None:intergenic | 50.0% | |
| GGTATGGTGAAGAGCAGTTG+AGG | - | Chr2:46548299-46548318 | MsG0280009158.01.T01:CDS | 50.0% | |
| TCGGCTTCAGCTCAAGTTTC+GGG | - | Chr2:46547665-46547684 | MsG0280009158.01.T01:CDS | 50.0% | |
| TGCAGACAAGGGAAAGGGAA+CGG | - | Chr2:46548141-46548160 | MsG0280009158.01.T01:CDS | 50.0% | |
| TGTATCAGTAGTAGGCGCGA+CGG | - | Chr2:46547190-46547209 | MsG0280009158.01.T01:intron | 50.0% | |
| TTTACAAGGAGAGAAGGCCG+TGG | - | Chr2:46547322-46547341 | MsG0280009158.01.T01:intron | 50.0% | |
| ! | GTCGGCTTCAGCTCAAGTTT+CGG | - | Chr2:46547664-46547683 | MsG0280009158.01.T01:CDS | 50.0% |
| !! | AGAGAGTGTTGATCGGAAGG+GGG | - | Chr2:46547634-46547653 | MsG0280009158.01.T01:CDS | 50.0% |
| !! | ATCCACAGCGGTGGACTTTT+TGG | + | Chr2:46548386-46548405 | None:intergenic | 50.0% |
| !! | GAGAGAGAGTGTTGATCGGA+AGG | - | Chr2:46547631-46547650 | MsG0280009158.01.T01:CDS | 50.0% |
| !! | GAGAGAGTGTTGATCGGAAG+GGG | - | Chr2:46547633-46547652 | MsG0280009158.01.T01:CDS | 50.0% |
| AAGGGAACGGTGACTATCGC+TGG | - | Chr2:46548154-46548173 | MsG0280009158.01.T01:CDS | 55.0% | |
| ACTTGCCTCCATCTCCACCA+CGG | + | Chr2:46547342-46547361 | None:intergenic | 55.0% | |
| CACAACATCATCCACAGCGG+TGG | + | Chr2:46548395-46548414 | None:intergenic | 55.0% | |
| CACACACCAAGCTAGGTTCC+TGG | + | Chr2:46547694-46547713 | None:intergenic | 55.0% | |
| CCACTTCCACACACCAAGCT+AGG | + | Chr2:46547701-46547720 | None:intergenic | 55.0% | |
| CTTCCCGAACCCTGCGTATA+CGG | - | Chr2:46548536-46548555 | MsG0280009158.01.T01:CDS | 55.0% | |
| GTATACGCAGGGTTCGGGAA+GGG | + | Chr2:46548537-46548556 | None:intergenic | 55.0% | |
| TCATGCTTTCCGGTGGCTTG+TGG | + | Chr2:46548004-46548023 | None:intergenic | 55.0% | |
| TCGGAAGGGGGAAAGATCGT+CGG | - | Chr2:46547646-46547665 | MsG0280009158.01.T01:CDS | 55.0% | |
| TTCCCGAACCCTGCGTATAC+GGG | - | Chr2:46548537-46548556 | MsG0280009158.01.T01:CDS | 55.0% | |
| ! | ACGGGAGCACGGTTATGAGA+AGG | - | Chr2:46547564-46547583 | MsG0280009158.01.T01:CDS | 55.0% |
| ! | AGCTCAAGTTTCGGGTGACC+AGG | - | Chr2:46547673-46547692 | MsG0280009158.01.T01:CDS | 55.0% |
| !! | CAGGAACCTAGCTTGGTGTG+TGG | - | Chr2:46547692-46547711 | MsG0280009158.01.T01:CDS | 55.0% |
| !! | CCTAGCTTGGTGTGTGGAAG+TGG | - | Chr2:46547698-46547717 | MsG0280009158.01.T01:CDS | 55.0% |
| ACAAGGAGAGAAGGCCGTGG+TGG | - | Chr2:46547325-46547344 | MsG0280009158.01.T01:intron | 60.0% | |
| CGTATACGCAGGGTTCGGGA+AGG | + | Chr2:46548538-46548557 | None:intergenic | 60.0% | |
| CTCCCGTATACGCAGGGTTC+GGG | + | Chr2:46548542-46548561 | None:intergenic | 60.0% | |
| GCTCCCGTATACGCAGGGTT+CGG | + | Chr2:46548543-46548562 | None:intergenic | 60.0% | |
| GGGTGACCAGGAACCTAGCT+TGG | - | Chr2:46547685-46547704 | MsG0280009158.01.T01:CDS | 60.0% | |
| ! | AGAGAAGGCCGTGGTGGAGA+TGG | - | Chr2:46547331-46547350 | MsG0280009158.01.T01:intron | 60.0% |
| CTTCGAGGGTGGCTTCGGCA+TGG | + | Chr2:46547397-46547416 | None:intergenic | 65.0% | |
| ! | GAAGGCCGTGGTGGAGATGG+AGG | - | Chr2:46547334-46547353 | MsG0280009158.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 46547152 | 46548693 | 46547152 | ID=MsG0280009158.01;Name=MsG0280009158.01 |
| Chr2 | mRNA | 46547152 | 46548693 | 46547152 | ID=MsG0280009158.01.T01;Parent=MsG0280009158.01;Name=MsG0280009158.01.T01;_AED=0.26;_eAED=0.26;_QI=0|0|0|1|0|0.5|2|0|435 |
| Chr2 | exon | 46547410 | 46548693 | 46547410 | ID=MsG0280009158.01.T01:exon:15810;Parent=MsG0280009158.01.T01 |
| Chr2 | exon | 46547152 | 46547175 | 46547152 | ID=MsG0280009158.01.T01:exon:15811;Parent=MsG0280009158.01.T01 |
| Chr2 | CDS | 46547410 | 46548693 | 46547410 | ID=MsG0280009158.01.T01:cds;Parent=MsG0280009158.01.T01 |
| Chr2 | CDS | 46547152 | 46547175 | 46547152 | ID=MsG0280009158.01.T01:cds;Parent=MsG0280009158.01.T01 |
| Gene Sequence |
| Protein sequence |
