AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009997.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009997.01.T01 MTR_2g075830 95.015 341 17 0 1 341 1 341 0.0 662
MsG0280009997.01.T01 MTR_5g022560 75.581 344 81 2 1 341 1 344 0.0 546
MsG0280009997.01.T01 MTR_4g079770 76.369 347 74 6 1 341 1 345 0.0 543
MsG0280009997.01.T01 MTR_4g107930 75.072 345 82 3 1 341 1 345 0.0 541
MsG0280009997.01.T01 MTR_4g047610 75.362 345 79 4 1 341 1 343 0.0 522
MsG0280009997.01.T01 MTR_4g079470 76.994 326 68 5 21 341 22 345 0.0 520
MsG0280009997.01.T01 MTR_4g079800 75.460 326 73 5 21 341 22 345 0.0 513
MsG0280009997.01.T01 MTR_4g080700 63.924 316 111 3 27 341 27 340 2.07e-153 434
MsG0280009997.01.T01 MTR_4g080730 63.291 316 113 3 27 341 27 340 4.21e-151 429
MsG0280009997.01.T01 MTR_4g080360 54.599 337 145 4 10 341 9 342 5.74e-134 385
MsG0280009997.01.T01 MTR_2g083930 52.450 347 147 5 3 339 4 342 8.30e-128 369
MsG0280009997.01.T01 MTR_4g104370 53.779 344 143 8 6 339 5 342 5.63e-126 365
MsG0280009997.01.T01 MTR_7g078600 55.911 313 127 5 31 339 31 336 1.09e-124 362
MsG0280009997.01.T01 MTR_3g075390 52.616 344 148 7 5 339 6 343 1.87e-123 359
MsG0280009997.01.T01 MTR_1g107550 54.103 329 142 6 18 339 28 354 9.45e-122 359
MsG0280009997.01.T01 MTR_4g079440 56.026 307 132 3 33 339 40 343 2.57e-121 353
MsG0280009997.01.T01 MTR_7g079230 54.313 313 130 4 31 339 31 334 1.26e-119 348
MsG0280009997.01.T01 MTR_3g116080 55.096 314 128 6 33 340 41 347 1.67e-117 343
MsG0280009997.01.T01 MTR_2g090890 49.412 340 166 4 1 339 1 335 5.82e-117 342
MsG0280009997.01.T01 MTR_1g018840 49.860 357 155 8 1 339 10 360 4.74e-116 343
MsG0280009997.01.T01 MTR_1g018840 50.000 354 159 8 1 339 10 360 7.27e-116 344
MsG0280009997.01.T01 MTR_4g094918 49.853 339 159 6 10 340 6 341 1.69e-115 339
MsG0280009997.01.T01 MTR_3g102220 50.143 349 152 11 10 339 15 360 7.08e-110 328
MsG0280009997.01.T01 MTR_3g112430 51.447 311 135 4 40 340 37 341 1.22e-107 322
MsG0280009997.01.T01 MTR_2g015850 52.249 289 130 5 55 339 78 362 1.34e-93 283
MsG0280009997.01.T01 MTR_2g016270 42.982 342 168 9 9 340 16 340 3.23e-86 268
MsG0280009997.01.T01 MTR_2g016180 42.651 347 177 9 9 340 16 355 4.69e-86 268
MsG0280009997.01.T01 MTR_2g067900 47.152 316 145 10 38 338 15 323 5.19e-84 257
MsG0280009997.01.T01 MTR_2g064475 41.667 348 147 14 38 340 15 351 3.08e-75 236
MsG0280009997.01.T01 MTR_2g067560 45.342 322 140 14 38 335 15 324 3.53e-74 246
MsG0280009997.01.T01 MTR_2g015920 38.483 356 180 13 4 332 7 350 5.17e-72 228
MsG0280009997.01.T01 MTR_7g078630 46.237 279 111 6 33 300 700 950 1.05e-69 234
MsG0280009997.01.T01 MTR_4g065077 36.538 364 198 10 1 340 2 356 1.18e-68 219
MsG0280009997.01.T01 MTR_2g066980 35.593 354 166 11 10 340 4 318 2.92e-68 217
MsG0280009997.01.T01 MTR_4g125300 42.244 303 157 9 45 340 57 348 5.89e-68 217
MsG0280009997.01.T01 MTR_4g071060 36.620 355 189 9 7 332 1 348 3.13e-65 210
MsG0280009997.01.T01 MTR_2g015930 37.119 361 185 15 1 332 3 350 4.07e-65 210
MsG0280009997.01.T01 MTR_1g023810 44.828 232 119 6 110 338 36 261 4.51e-62 199
MsG0280009997.01.T01 MTR_8g086470 34.903 361 192 10 1 340 18 356 7.59e-62 201
MsG0280009997.01.T01 MTR_1g023210 39.088 307 151 10 48 332 60 352 1.00e-61 201
MsG0280009997.01.T01 MTR_1g094135 35.647 317 171 10 37 332 54 358 2.76e-52 177
MsG0280009997.01.T01 MTR_4g072790 36.364 297 142 11 45 332 54 312 8.21e-47 161
MsG0280009997.01.T01 MTR_4g072340 35.880 301 142 11 45 332 54 316 3.96e-45 157
MsG0280009997.01.T01 MTR_4g073660 35.880 301 142 11 45 332 53 315 4.25e-45 157
MsG0280009997.01.T01 MTR_2g015840 46.835 158 73 3 8 158 3 156 1.77e-43 151
MsG0280009997.01.T01 MTR_2g015840 56.250 112 48 1 229 340 161 271 2.85e-36 132
MsG0280009997.01.T01 MTR_7g078580 64.286 98 34 1 242 339 4 100 2.51e-42 143
MsG0280009997.01.T01 MTR_7g079130 64.835 91 32 0 249 339 6 96 8.70e-38 130
MsG0280009997.01.T01 MTR_1g025450 38.624 189 89 7 110 293 42 208 1.50e-33 130
MsG0280009997.01.T01 MTR_7g078310 43.571 140 72 3 79 216 113 247 1.36e-30 117
MsG0280009997.01.T01 MTR_2g016380 43.590 117 61 3 227 340 21 135 6.30e-26 104
MsG0280009997.01.T01 MTR_3g029560 29.108 213 121 6 134 340 49 237 9.71e-23 95.5
MsG0280009997.01.T01 MTR_8g087510 44.275 131 66 5 164 292 23 148 8.97e-22 91.3
MsG0280009997.01.T01 MTR_7g111060 29.515 227 128 7 129 332 113 330 6.58e-21 92.8
MsG0280009997.01.T01 MTR_7g111050 30.508 236 136 8 118 332 99 327 3.34e-20 90.5
MsG0280009997.01.T01 MTR_7g079260 52.778 72 18 1 266 337 7 62 3.03e-19 82.4
MsG0280009997.01.T01 MTR_2g047960 47.059 85 44 1 132 216 7 90 7.50e-17 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009997.01.T01 AT5G45890 53.529 340 143 7 14 340 8 345 1.05e-128 372
MsG0280009997.01.T01 AT5G50260 53.235 340 142 5 14 339 5 341 1.96e-124 362
MsG0280009997.01.T01 AT3G48340 51.156 346 156 6 3 339 1 342 1.45e-120 352
MsG0280009997.01.T01 AT2G34080 50.000 342 157 6 10 341 8 345 9.62e-119 347
MsG0280009997.01.T01 AT2G27420 50.435 345 157 4 10 341 5 348 2.18e-117 343
MsG0280009997.01.T01 AT3G19390 49.563 343 167 5 2 340 5 345 7.46e-117 345
MsG0280009997.01.T01 AT3G48350 51.156 346 156 8 5 340 1 343 9.15e-117 342
MsG0280009997.01.T01 AT4G35350 51.039 337 151 6 13 340 21 352 2.57e-116 341
MsG0280009997.01.T01 AT1G06260 51.917 339 147 8 10 339 10 341 6.78e-115 337
MsG0280009997.01.T01 AT3G49340 49.133 346 154 5 11 341 3 341 1.19e-114 336
MsG0280009997.01.T01 AT5G43060 50.000 352 155 11 1 339 9 352 7.66e-114 338
MsG0280009997.01.T01 AT1G29090 48.588 354 163 8 3 341 6 355 2.04e-113 333
MsG0280009997.01.T01 AT3G19400 51.623 308 140 5 39 340 44 348 4.41e-112 330
MsG0280009997.01.T01 AT1G47128 52.273 308 134 8 39 339 50 351 5.88e-111 331
MsG0280009997.01.T01 AT1G20850 51.757 313 144 4 32 340 44 353 4.41e-110 325
MsG0280009997.01.T01 AT1G29080 48.159 353 155 10 10 341 1 346 4.96e-110 324
MsG0280009997.01.T01 AT4G36880 53.333 315 126 7 41 339 51 360 1.62e-109 324
MsG0280009997.01.T01 AT4G11310 50.809 309 136 7 40 339 50 351 2.05e-105 313
MsG0280009997.01.T01 AT1G09850 50.323 310 148 4 33 339 26 332 9.48e-105 314
MsG0280009997.01.T01 AT4G23520 46.418 349 170 10 1 339 7 348 3.42e-103 307
MsG0280009997.01.T01 AT4G11320 49.020 306 146 5 40 339 57 358 7.90e-103 307
MsG0280009997.01.T01 AT4G11320 49.020 306 146 5 40 339 57 358 7.90e-103 307
MsG0280009997.01.T01 AT3G43960 44.578 332 170 8 16 339 20 345 2.27e-92 280
MsG0280009997.01.T01 AT1G29110 42.274 343 168 8 13 340 6 333 2.99e-88 268
MsG0280009997.01.T01 AT4G35350 49.077 271 124 6 13 274 21 286 6.67e-84 256
MsG0280009997.01.T01 AT3G48350 48.214 280 132 8 5 274 1 277 7.67e-79 243
MsG0280009997.01.T01 AT3G19400 48.750 240 119 3 39 274 44 283 4.11e-77 238
MsG0280009997.01.T01 AT3G45310 43.046 302 156 10 45 340 65 356 2.42e-70 223
MsG0280009997.01.T01 AT5G60360 43.377 302 155 10 45 340 65 356 2.61e-70 223
MsG0280009997.01.T01 AT3G45310 42.384 302 157 10 45 340 65 355 8.19e-68 217
MsG0280009997.01.T01 AT5G60360 43.046 302 155 11 45 340 65 355 9.21e-68 217
MsG0280009997.01.T01 AT5G60360 42.282 298 160 9 45 336 65 356 1.96e-67 216
MsG0280009997.01.T01 AT2G21430 39.216 306 158 8 45 332 54 349 7.18e-63 204
MsG0280009997.01.T01 AT4G39090 39.542 306 157 8 45 332 57 352 1.13e-62 204
MsG0280009997.01.T01 AT4G16190 39.088 307 159 8 45 332 61 358 7.00e-61 199
MsG0280009997.01.T01 AT3G54940 36.859 312 165 9 42 332 54 354 2.20e-54 182
MsG0280009997.01.T01 AT3G54940 36.000 225 132 4 42 256 54 276 5.08e-38 137
MsG0280009997.01.T01 AT1G02305 27.841 352 195 13 11 332 11 333 2.78e-25 105
MsG0280009997.01.T01 AT4G01610 27.797 295 177 10 70 336 48 334 7.13e-23 98.2
MsG0280009997.01.T01 AT4G01610 27.458 295 178 10 70 336 48 334 1.03e-21 95.1
MsG0280009997.01.T01 AT1G02300 30.000 210 123 7 142 332 146 350 1.66e-18 85.9
MsG0280009997.01.T01 AT2G22160 40.659 91 51 2 54 142 9 98 4.77e-15 70.9

Find 81 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATAAATCTTATAAATT+AGG 0.157228 2:+62595192 MsG0280009997.01.T01:CDS
TCTCATACATAGGGTCATTT+TGG 0.232576 2:-62595053 None:intergenic
ATTTGCATTGTTTCTTTGCT+TGG 0.237282 2:+62594996 MsG0280009997.01.T01:CDS
AGTTCTGCTGCTACCATTTC+CGG 0.245073 2:+62595735 MsG0280009997.01.T01:CDS
TACAAAAGTGGTGTCTTTAC+TGG 0.255221 2:+62595861 MsG0280009997.01.T01:CDS
TAAGTTGAGTACAGGAAATT+TGG 0.276268 2:+62595536 MsG0280009997.01.T01:CDS
TTTGCATTGTTTCTTTGCTT+GGG 0.324853 2:+62594997 MsG0280009997.01.T01:CDS
CGTAGCAAATCAACCGGTTT+CGG 0.341741 2:+62595803 MsG0280009997.01.T01:CDS
AATGCCTGCTCATCATTTGC+GGG 0.355488 2:-62595771 None:intergenic
ACAACATGGCAAAGTCTATA+AGG 0.357194 2:+62595095 MsG0280009997.01.T01:CDS
GACATTCTCGTACCCGGAAA+TGG 0.380302 2:-62595748 None:intergenic
CAATGCCTGCTCATCATTTG+CGG 0.390262 2:-62595772 None:intergenic
AATTATGCAGTTGGATAAGA+TGG 0.402093 2:-62596062 None:intergenic
ATTGAATCTTTCAATAATGT+TGG 0.404766 2:+62595171 MsG0280009997.01.T01:CDS
GATCATGGTGTAGCAGTTGT+AGG 0.405902 2:+62595903 MsG0280009997.01.T01:CDS
AATATTTGTAGGATGTTGTT+GGG 0.406693 2:+62595479 MsG0280009997.01.T01:intron
ATTGGTTGGTGAAGAATTCA+TGG 0.407682 2:+62595955 MsG0280009997.01.T01:CDS
GTTCTGCTGCTACCATTTCC+GGG 0.411095 2:+62595736 MsG0280009997.01.T01:CDS
TACCCTTATCAAGGTGTTGA+TGG 0.417342 2:+62595687 MsG0280009997.01.T01:CDS
GCATCAATGGCTACCGAAAC+CGG 0.418768 2:-62595816 None:intergenic
TAATATTTGTAGGATGTTGT+TGG 0.420839 2:+62595478 MsG0280009997.01.T01:intron
GAATTCATGGGGAACTCAAT+GGG 0.434741 2:+62595968 MsG0280009997.01.T01:CDS
GGGGTGAAGAAGGGTACATT+AGG 0.434781 2:+62595988 MsG0280009997.01.T01:CDS
AGGTTGTGAAGGTGGCCTTA+TGG 0.437220 2:+62595611 MsG0280009997.01.T01:CDS
TTCCATCAACACCTTGATAA+GGG 0.450919 2:-62595689 None:intergenic
GTCAGAGCCACTAGCATCAA+TGG 0.460761 2:-62595829 None:intergenic
GGAACTCAATGGGGTGAAGA+AGG 0.462980 2:+62595978 MsG0280009997.01.T01:CDS
GTTCCATCAACACCTTGATA+AGG 0.464383 2:-62595690 None:intergenic
TGCTCATGCCTCTCATACAT+AGG 0.466056 2:-62595063 None:intergenic
AAATCTTATAATTATGCAGT+TGG 0.468251 2:-62596071 None:intergenic
GCAACTAGAAACAAATTCAA+TGG 0.478900 2:+62595255 MsG0280009997.01.T01:CDS
ACTCAACTTATGAATTCCTT+CGG 0.492619 2:-62595523 None:intergenic
CATTAGGATGCAAAGGGGTG+TGG 0.492848 2:+62596004 MsG0280009997.01.T01:CDS
AGAATTCATGGGGAACTCAA+TGG 0.494609 2:+62595967 MsG0280009997.01.T01:CDS
ATTCGAAAGCATCATCCATA+AGG 0.507986 2:-62595626 None:intergenic
TACCATCTGCAGTGGATTGG+AGG 0.508009 2:+62595331 MsG0280009997.01.T01:CDS
CGAAACCGGTTGATTTGCTA+CGG 0.509364 2:-62595802 None:intergenic
GGAATTCATAAGTTGAGTAC+AGG 0.513328 2:+62595528 MsG0280009997.01.T01:CDS
ACATGCAATAAAACTGAAGT+AGG 0.516912 2:+62595711 MsG0280009997.01.T01:CDS
GGTGTAGCAGTTGTAGGTTA+TGG 0.517031 2:+62595909 MsG0280009997.01.T01:CDS
ATCTGCAGTGGATTGGAGGC+AGG 0.519791 2:+62595335 MsG0280009997.01.T01:CDS
TGCGGGGACATTCTCGTACC+CGG 0.524526 2:-62595754 None:intergenic
AGGGTACATTAGGATGCAAA+GGG 0.524704 2:+62595998 MsG0280009997.01.T01:CDS
AAAAGCCGTAGCAAATCAAC+CGG 0.525968 2:+62595797 MsG0280009997.01.T01:CDS
TGTCCCCGCAAATGATGAGC+AGG 0.529226 2:+62595767 MsG0280009997.01.T01:CDS
TTCTAGTTGCTACAAACTCA+TGG 0.534672 2:-62595242 None:intergenic
AAATTCAATGGATATTTGCA+TGG 0.546885 2:+62595267 MsG0280009997.01.T01:CDS
AAGGGTACATTAGGATGCAA+AGG 0.551462 2:+62595997 MsG0280009997.01.T01:CDS
GCAGTTGTAGGTTATGGTGT+TGG 0.552026 2:+62595915 MsG0280009997.01.T01:CDS
TAATGGACTTAGCACTGAAG+TGG 0.556033 2:+62595662 MsG0280009997.01.T01:CDS
TTGGTTGGTGAAGAATTCAT+GGG 0.557529 2:+62595956 MsG0280009997.01.T01:CDS
TCGGCTGTTGCATCAACCGA+AGG 0.561296 2:+62595507 MsG0280009997.01.T01:CDS
TGTGGAACTGAGTTGGATCA+TGG 0.564256 2:+62595888 MsG0280009997.01.T01:CDS
GAACTCAATGGGGTGAAGAA+GGG 0.565034 2:+62595979 MsG0280009997.01.T01:CDS
GAAGTGGAATACCCTTATCA+AGG 0.568429 2:+62595678 MsG0280009997.01.T01:CDS
GCTCATGCCTCTCATACATA+GGG 0.569140 2:-62595062 None:intergenic
ATGTACCATCTGCAGTGGAT+TGG 0.570020 2:+62595328 MsG0280009997.01.T01:CDS
TCGGTAGCCATTGATGCTAG+TGG 0.574292 2:+62595822 MsG0280009997.01.T01:CDS
TGCCTCCAATCCACTGCAGA+TGG 0.579586 2:-62595333 None:intergenic
TAAGGCCACCTTCACAACCT+TGG 0.583050 2:-62595608 None:intergenic
TCTATAAGGATGCACATGAA+AGG 0.584380 2:+62595109 MsG0280009997.01.T01:CDS
TGGTTCATGTGGAACTGAGT+TGG 0.588339 2:+62595881 MsG0280009997.01.T01:CDS
AGGGGTGTGGATGCTTCAGA+AGG 0.605030 2:+62596017 MsG0280009997.01.T01:CDS
GTGAAGATGAGACTAAGTAT+TGG 0.606328 2:+62595937 MsG0280009997.01.T01:CDS
TGTATGAGAGGCATGAGCAA+TGG 0.614507 2:+62595067 MsG0280009997.01.T01:CDS
GCAGTGGATTGGAGGCAGGA+AGG 0.619784 2:+62595339 MsG0280009997.01.T01:CDS
GAAGACCAAGGTTGTGAAGG+TGG 0.628652 2:+62595603 MsG0280009997.01.T01:CDS
AAAATGACCCTATGTATGAG+AGG 0.630864 2:+62595055 MsG0280009997.01.T01:CDS
GGTGTCTTTACTGGTTCATG+TGG 0.637602 2:+62595870 MsG0280009997.01.T01:CDS
GGTGAAGACCAAGGTTGTGA+AGG 0.642150 2:+62595600 MsG0280009997.01.T01:CDS
GATGCTTCAGAAGGAATATG+TGG 0.650231 2:+62596026 MsG0280009997.01.T01:CDS
AGATGAGACTAAGTATTGGT+TGG 0.653723 2:+62595941 MsG0280009997.01.T01:CDS
ATGCCTGCTCATCATTTGCG+GGG 0.658912 2:-62595770 None:intergenic
CTTGTTGATTGTGACACAAG+TGG 0.664457 2:+62595579 MsG0280009997.01.T01:CDS
AATTCATGGGGAACTCAATG+GGG 0.670782 2:+62595969 MsG0280009997.01.T01:CDS
TAGTGATGTACCATCTGCAG+TGG 0.678103 2:+62595323 MsG0280009997.01.T01:CDS
TGAGAGGCATGAGCAATGGA+TGG 0.686001 2:+62595071 MsG0280009997.01.T01:CDS
TGGTTGGTGAAGAATTCATG+GGG 0.692894 2:+62595957 MsG0280009997.01.T01:CDS
GAGCAATGGATGGTACAACA+TGG 0.707448 2:+62595081 MsG0280009997.01.T01:CDS
GACACAAGTGGTGAAGACCA+AGG 0.761833 2:+62595591 MsG0280009997.01.T01:CDS
GGGTACATTAGGATGCAAAG+GGG 0.770853 2:+62595999 MsG0280009997.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATTTATATAACAATGA+AGG + Chr2:62595407-62595426 MsG0280009997.01.T01:intron 10.0%
!! GAATTCATTATAAAAAATAA+TGG + Chr2:62595645-62595664 MsG0280009997.01.T01:CDS 10.0%
!! GGAAATAAATCTTATAAATT+AGG + Chr2:62595192-62595211 MsG0280009997.01.T01:CDS 15.0%
!!! AACTAAATTTTACTATTACA+AGG - Chr2:62595452-62595471 None:intergenic 15.0%
!! AGTTGTGATTTAATATTTGT+AGG + Chr2:62595468-62595487 MsG0280009997.01.T01:intron 20.0%
!! ATTGAATCTTTCAATAATGT+TGG + Chr2:62595171-62595190 MsG0280009997.01.T01:CDS 20.0%
! AAATTCAATGGATATTTGCA+TGG + Chr2:62595267-62595286 MsG0280009997.01.T01:CDS 25.0%
! AATATTTGTAGGATGTTGTT+GGG + Chr2:62595479-62595498 MsG0280009997.01.T01:intron 25.0%
! TAATATTTGTAGGATGTTGT+TGG + Chr2:62595478-62595497 MsG0280009997.01.T01:intron 25.0%
! TTTATATAACAATGAAGGTG+TGG + Chr2:62595412-62595431 MsG0280009997.01.T01:intron 25.0%
!! GACTTTCAATTTTACAAAAG+TGG + Chr2:62595849-62595868 MsG0280009997.01.T01:CDS 25.0%
ACATGCAATAAAACTGAAGT+AGG + Chr2:62595711-62595730 MsG0280009997.01.T01:CDS 30.0%
ACTCAACTTATGAATTCCTT+CGG - Chr2:62595526-62595545 None:intergenic 30.0%
GCAACTAGAAACAAATTCAA+TGG + Chr2:62595255-62595274 MsG0280009997.01.T01:CDS 30.0%
! ATGAAAGGCAAAAACGTTTT+GGG + Chr2:62595124-62595143 MsG0280009997.01.T01:CDS 30.0%
! ATTTGCATTGTTTCTTTGCT+TGG + Chr2:62594996-62595015 MsG0280009997.01.T01:CDS 30.0%
! TAAGTTGAGTACAGGAAATT+TGG + Chr2:62595536-62595555 MsG0280009997.01.T01:CDS 30.0%
! TTTGCATTGTTTCTTTGCTT+GGG + Chr2:62594997-62595016 MsG0280009997.01.T01:CDS 30.0%
AAAATGACCCTATGTATGAG+AGG + Chr2:62595055-62595074 MsG0280009997.01.T01:CDS 35.0%
ACAACATGGCAAAGTCTATA+AGG + Chr2:62595095-62595114 MsG0280009997.01.T01:CDS 35.0%
GTGAAAAATCAAGGTCAATG+TGG + Chr2:62595375-62595394 MsG0280009997.01.T01:CDS 35.0%
GTGAAGATGAGACTAAGTAT+TGG + Chr2:62595937-62595956 MsG0280009997.01.T01:CDS 35.0%
TACAAAAGTGGTGTCTTTAC+TGG + Chr2:62595861-62595880 MsG0280009997.01.T01:CDS 35.0%
TCTATAAGGATGCACATGAA+AGG + Chr2:62595109-62595128 MsG0280009997.01.T01:CDS 35.0%
TTCCATCAACACCTTGATAA+GGG - Chr2:62595692-62595711 None:intergenic 35.0%
! CATGAAAGGCAAAAACGTTT+TGG + Chr2:62595123-62595142 MsG0280009997.01.T01:CDS 35.0%
! CATTGACCTTGATTTTTCAC+AGG - Chr2:62595375-62595394 None:intergenic 35.0%
! GGAATTCATAAGTTGAGTAC+AGG + Chr2:62595528-62595547 MsG0280009997.01.T01:CDS 35.0%
! TCTCATACATAGGGTCATTT+TGG - Chr2:62595056-62595075 None:intergenic 35.0%
! TTCTAGTTGCTACAAACTCA+TGG - Chr2:62595245-62595264 None:intergenic 35.0%
!! AGATGAGACTAAGTATTGGT+TGG + Chr2:62595941-62595960 MsG0280009997.01.T01:CDS 35.0%
!! ATTCGAAAGCATCATCCATA+AGG - Chr2:62595629-62595648 None:intergenic 35.0%
!! ATTGGTTGGTGAAGAATTCA+TGG + Chr2:62595955-62595974 MsG0280009997.01.T01:CDS 35.0%
!! TTGGTTGGTGAAGAATTCAT+GGG + Chr2:62595956-62595975 MsG0280009997.01.T01:CDS 35.0%
AAAAGCCGTAGCAAATCAAC+CGG + Chr2:62595797-62595816 MsG0280009997.01.T01:CDS 40.0%
AATTCATGGGGAACTCAATG+GGG + Chr2:62595969-62595988 MsG0280009997.01.T01:CDS 40.0%
AGAATTCATGGGGAACTCAA+TGG + Chr2:62595967-62595986 MsG0280009997.01.T01:CDS 40.0%
AGGGTACATTAGGATGCAAA+GGG + Chr2:62595998-62596017 MsG0280009997.01.T01:CDS 40.0%
GAAGTGGAATACCCTTATCA+AGG + Chr2:62595678-62595697 MsG0280009997.01.T01:CDS 40.0%
GAATTCATGGGGAACTCAAT+GGG + Chr2:62595968-62595987 MsG0280009997.01.T01:CDS 40.0%
GATGCTTCAGAAGGAATATG+TGG + Chr2:62596026-62596045 MsG0280009997.01.T01:CDS 40.0%
GTCACACCTGTGAAAAATCA+AGG + Chr2:62595366-62595385 MsG0280009997.01.T01:CDS 40.0%
GTTCCATCAACACCTTGATA+AGG - Chr2:62595693-62595712 None:intergenic 40.0%
! AAGGGTACATTAGGATGCAA+AGG + Chr2:62595997-62596016 MsG0280009997.01.T01:CDS 40.0%
! CTTGTTGATTGTGACACAAG+TGG + Chr2:62595579-62595598 MsG0280009997.01.T01:CDS 40.0%
!! TAATGGACTTAGCACTGAAG+TGG + Chr2:62595662-62595681 MsG0280009997.01.T01:CDS 40.0%
!! TACCCTTATCAAGGTGTTGA+TGG + Chr2:62595687-62595706 MsG0280009997.01.T01:CDS 40.0%
!! TGGTTGGTGAAGAATTCATG+GGG + Chr2:62595957-62595976 MsG0280009997.01.T01:CDS 40.0%
AATGCCTGCTCATCATTTGC+GGG - Chr2:62595774-62595793 None:intergenic 45.0%
AGTTCTGCTGCTACCATTTC+CGG + Chr2:62595735-62595754 MsG0280009997.01.T01:CDS 45.0%
ATGTACCATCTGCAGTGGAT+TGG + Chr2:62595328-62595347 MsG0280009997.01.T01:CDS 45.0%
CAATGCCTGCTCATCATTTG+CGG - Chr2:62595775-62595794 None:intergenic 45.0%
GAACTCAATGGGGTGAAGAA+GGG + Chr2:62595979-62595998 MsG0280009997.01.T01:CDS 45.0%
GAGCAATGGATGGTACAACA+TGG + Chr2:62595081-62595100 MsG0280009997.01.T01:CDS 45.0%
GATCATGGTGTAGCAGTTGT+AGG + Chr2:62595903-62595922 MsG0280009997.01.T01:CDS 45.0%
GCAGTTGTAGGTTATGGTGT+TGG + Chr2:62595915-62595934 MsG0280009997.01.T01:CDS 45.0%
GCTCATGCCTCTCATACATA+GGG - Chr2:62595065-62595084 None:intergenic 45.0%
GGGTACATTAGGATGCAAAG+GGG + Chr2:62595999-62596018 MsG0280009997.01.T01:CDS 45.0%
GGTGTAGCAGTTGTAGGTTA+TGG + Chr2:62595909-62595928 MsG0280009997.01.T01:CDS 45.0%
TAGTGATGTACCATCTGCAG+TGG + Chr2:62595323-62595342 MsG0280009997.01.T01:CDS 45.0%
TGCTCATGCCTCTCATACAT+AGG - Chr2:62595066-62595085 None:intergenic 45.0%
TGGTTCATGTGGAACTGAGT+TGG + Chr2:62595881-62595900 MsG0280009997.01.T01:CDS 45.0%
! AGGATGTTGTTGGGCGTTTT+CGG + Chr2:62595488-62595507 MsG0280009997.01.T01:intron 45.0%
! CGTAGCAAATCAACCGGTTT+CGG + Chr2:62595803-62595822 MsG0280009997.01.T01:CDS 45.0%
! TGTATGAGAGGCATGAGCAA+TGG + Chr2:62595067-62595086 MsG0280009997.01.T01:CDS 45.0%
! TGTGGAACTGAGTTGGATCA+TGG + Chr2:62595888-62595907 MsG0280009997.01.T01:CDS 45.0%
!! CGAAACCGGTTGATTTGCTA+CGG - Chr2:62595805-62595824 None:intergenic 45.0%
!! GGTGTCTTTACTGGTTCATG+TGG + Chr2:62595870-62595889 MsG0280009997.01.T01:CDS 45.0%
ATGCCTGCTCATCATTTGCG+GGG - Chr2:62595773-62595792 None:intergenic 50.0%
CATTAGGATGCAAAGGGGTG+TGG + Chr2:62596004-62596023 MsG0280009997.01.T01:CDS 50.0%
GAAGACCAAGGTTGTGAAGG+TGG + Chr2:62595603-62595622 MsG0280009997.01.T01:CDS 50.0%
GACACAAGTGGTGAAGACCA+AGG + Chr2:62595591-62595610 MsG0280009997.01.T01:CDS 50.0%
GACATTCTCGTACCCGGAAA+TGG - Chr2:62595751-62595770 None:intergenic 50.0%
GCATCAATGGCTACCGAAAC+CGG - Chr2:62595819-62595838 None:intergenic 50.0%
GGAACTCAATGGGGTGAAGA+AGG + Chr2:62595978-62595997 MsG0280009997.01.T01:CDS 50.0%
GGTGAAGACCAAGGTTGTGA+AGG + Chr2:62595600-62595619 MsG0280009997.01.T01:CDS 50.0%
GTCAGAGCCACTAGCATCAA+TGG - Chr2:62595832-62595851 None:intergenic 50.0%
GTTCTGCTGCTACCATTTCC+GGG + Chr2:62595736-62595755 MsG0280009997.01.T01:CDS 50.0%
TAAGGCCACCTTCACAACCT+TGG - Chr2:62595611-62595630 None:intergenic 50.0%
TCGGTAGCCATTGATGCTAG+TGG + Chr2:62595822-62595841 MsG0280009997.01.T01:CDS 50.0%
! AGGTTGTGAAGGTGGCCTTA+TGG + Chr2:62595611-62595630 MsG0280009997.01.T01:CDS 50.0%
! GGGGTGAAGAAGGGTACATT+AGG + Chr2:62595988-62596007 MsG0280009997.01.T01:CDS 50.0%
! TGAGAGGCATGAGCAATGGA+TGG + Chr2:62595071-62595090 MsG0280009997.01.T01:CDS 50.0%
!! TACCATCTGCAGTGGATTGG+AGG + Chr2:62595331-62595350 MsG0280009997.01.T01:CDS 50.0%
TCGGCTGTTGCATCAACCGA+AGG + Chr2:62595507-62595526 MsG0280009997.01.T01:CDS 55.0%
TGCCTCCAATCCACTGCAGA+TGG - Chr2:62595336-62595355 None:intergenic 55.0%
TGTCCCCGCAAATGATGAGC+AGG + Chr2:62595767-62595786 MsG0280009997.01.T01:CDS 55.0%
! AGGGGTGTGGATGCTTCAGA+AGG + Chr2:62596017-62596036 MsG0280009997.01.T01:CDS 55.0%
!! ATCTGCAGTGGATTGGAGGC+AGG + Chr2:62595335-62595354 MsG0280009997.01.T01:CDS 55.0%
TGCGGGGACATTCTCGTACC+CGG - Chr2:62595757-62595776 None:intergenic 60.0%
!! GCAGTGGATTGGAGGCAGGA+AGG + Chr2:62595339-62595358 MsG0280009997.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 62594964 62596082 62594964 ID=MsG0280009997.01;Name=MsG0280009997.01
Chr2 mRNA 62594964 62596082 62594964 ID=MsG0280009997.01.T01;Parent=MsG0280009997.01;Name=MsG0280009997.01.T01;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|1|1|2|0|341
Chr2 exon 62594964 62595396 62594964 ID=MsG0280009997.01.T01:exon:17801;Parent=MsG0280009997.01.T01
Chr2 exon 62595490 62596082 62595490 ID=MsG0280009997.01.T01:exon:17802;Parent=MsG0280009997.01.T01
Chr2 CDS 62594964 62595396 62594964 ID=MsG0280009997.01.T01:cds;Parent=MsG0280009997.01.T01
Chr2 CDS 62595490 62596082 62595490 ID=MsG0280009997.01.T01:cds;Parent=MsG0280009997.01.T01
Gene Sequence

>MsG0280009997.01.T01

ATGGTTATGAATATTCAATTACATTATATTTCATTTGCATTGTTTCTTTGCTTGGGATTGTTGAGTTTTCAAGCTACATCTCGAACTCTCCAAAATGACCCTATGTATGAGAGGCATGAGCAATGGATGGTACAACATGGCAAAGTCTATAAGGATGCACATGAAAGGCAAAAACGTTTTGGGATATTCAAAGAAAATGTGAATTACATTGAATCTTTCAATAATGTTGGAAATAAATCTTATAAATTAGGACTTAATCATTTTGCTGATCTTAGTAACCATGAGTTTGTAGCAACTAGAAACAAATTCAATGGATATTTGCATGGCTCAAGCATAACTACTTTTAAGTACAAAAATGTTAGTGATGTACCATCTGCAGTGGATTGGAGGCAGGAAGGAGCAGTCACACCTGTGAAAAATCAAGGTCAATGTGGATGTTGTTGGGCGTTTTCGGCTGTTGCATCAACCGAAGGAATTCATAAGTTGAGTACAGGAAATTTGGTCTCTTTATCAGAACAAGAACTTGTTGATTGTGACACAAGTGGTGAAGACCAAGGTTGTGAAGGTGGCCTTATGGATGATGCTTTCGAATTCATTATAAAAAATAATGGACTTAGCACTGAAGTGGAATACCCTTATCAAGGTGTTGATGGAACATGCAATAAAACTGAAGTAGGCAGTTCTGCTGCTACCATTTCCGGGTACGAGAATGTCCCCGCAAATGATGAGCAGGCATTGCAAAAAGCCGTAGCAAATCAACCGGTTTCGGTAGCCATTGATGCTAGTGGCTCTGACTTTCAATTTTACAAAAGTGGTGTCTTTACTGGTTCATGTGGAACTGAGTTGGATCATGGTGTAGCAGTTGTAGGTTATGGTGTTGGTGAAGATGAGACTAAGTATTGGTTGGTGAAGAATTCATGGGGAACTCAATGGGGTGAAGAAGGGTACATTAGGATGCAAAGGGGTGTGGATGCTTCAGAAGGAATATGTGGTATTGCAATGCAACCATCTTATCCAACTGCATAA
Protein sequence

>MsG0280009997.01.T01

MVMNIQLHYISFALFLCLGLLSFQATSRTLQNDPMYERHEQWMVQHGKVYKDAHERQKRFGIFKENVNYIESFNNVGNKSYKLGLNHFADLSNHEFVATRNKFNGYLHGSSITTFKYKNVSDVPSAVDWRQEGAVTPVKNQGQCGCCWAFSAVASTEGIHKLSTGNLVSLSEQELVDCDTSGEDQGCEGGLMDDAFEFIIKNNGLSTEVEYPYQGVDGTCNKTEVGSSAATISGYENVPANDEQALQKAVANQPVSVAIDASGSDFQFYKSGVFTGSCGTELDHGVAVVGYGVGEDETKYWLVKNSWGTQWGEEGYIRMQRGVDASEGICGIAMQPSYPTA*