AlfalfaGEDB | MsG0280006826.01

M. sativa cultivar ZhongmuNo.1 / MsG0280006826.01

KEGG: -
GO: GO:0006508 GO:0008234
PFAM: PF00112 PF08246

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006826.01.T01	PNY18001.1	80.357	336	65	1	1	336	1	335	0	560

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006826.01.T01	Q9FJ47	46.939	343	173	6	1	336	6	346	5.79E-108	322

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006826.01.T01	A0A2K3PRV5	80.357	336	65	1	1	336	1	335	0.0	560

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000649.01	MsG0280006826.01	0.813903	2.022616e-51	1.337597e-48
MsG0180001752.01	MsG0280006826.01	0.831262	1.843999e-55	1.990481e-52
MsG0280006826.01	MsG0280006873.01	0.872440	3.175473e-67	1.329040e-63
MsG0280006826.01	MsG0280006875.01	0.901854	1.758274e-78	2.421741e-74
MsG0280006826.01	MsG0480020574.01	0.801189	1.012675e-48	4.805913e-46
MsG0280006826.01	MsG0680034013.01	0.808994	2.355187e-50	1.366476e-47
MsG0280006826.01	MsG0780041475.01	0.816680	4.881443e-52	3.481779e-49
MsG0280006826.01	MsG0880042656.01	0.805373	1.377472e-49	7.275353e-47

PPI

Gene1	Gene2	Type
MsG0280006826.01	MsG0480021964.01	PPI
MsG0180005131.01	MsG0280006826.01	PPI
MsG0280006826.01	MsG0280009997.01	PPI
MsG0480021298.01	MsG0280006826.01	PPI
MsG0880046427.01	MsG0280006826.01	PPI
MsG0280006826.01	MsG0480022005.01	PPI
MsG0180005142.01	MsG0280006826.01	PPI
MsG0280006826.01	MsG0480021298.01	PPI
MsG0280006826.01	MsG0080048321.01	PPI
MsG0280006826.01	MsG0480021298.01	PPI
MsG0280006826.01	MsG0080048038.01	PPI
MsG0280010797.01	MsG0280006826.01	PPI
MsG0380017975.01	MsG0280006826.01	PPI
MsG0480020317.01	MsG0280006826.01	PPI
MsG0480021950.01	MsG0280006826.01	PPI
MsG0480021961.01	MsG0280006826.01	PPI
MsG0280006872.01	MsG0280006826.01	PPI
MsG0880047338.01	MsG0280006826.01	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006826.01.T01	MTR_2g015850	92.388	289	21	1	48	336	77	364	0.0	536
MsG0280006826.01.T01	MTR_4g107930	52.941	340	153	5	1	335	7	344	2.82e-122	355
MsG0280006826.01.T01	MTR_5g022560	52.647	340	150	6	3	335	8	343	9.98e-122	354
MsG0280006826.01.T01	MTR_4g079770	54.769	325	139	6	16	335	23	344	3.17e-121	353
MsG0280006826.01.T01	MTR_4g079470	54.769	325	139	6	16	335	23	344	1.37e-120	351
MsG0280006826.01.T01	MTR_4g079800	53.846	325	142	6	16	335	23	344	1.68e-120	351
MsG0280006826.01.T01	MTR_4g047610	53.086	324	145	5	16	335	22	342	1.32e-115	338
MsG0280006826.01.T01	MTR_2g075830	49.560	341	156	5	1	335	10	340	1.63e-109	323
MsG0280006826.01.T01	MTR_4g080360	47.321	336	171	6	3	334	7	340	1.00e-108	321
MsG0280006826.01.T01	MTR_4g080730	49.844	321	151	6	19	335	25	339	4.81e-104	309
MsG0280006826.01.T01	MTR_4g080700	48.910	321	154	6	19	335	25	339	2.90e-103	307
MsG0280006826.01.T01	MTR_1g107550	48.734	316	153	6	25	334	42	354	1.32e-96	294
MsG0280006826.01.T01	MTR_2g015840	82.278	158	28	0	1	158	1	158	4.77e-96	286
MsG0280006826.01.T01	MTR_2g015840	54.839	155	65	1	187	336	118	272	4.75e-53	176
MsG0280006826.01.T01	MTR_3g102220	45.646	333	171	7	10	334	30	360	1.94e-95	291
MsG0280006826.01.T01	MTR_4g079440	46.562	320	153	7	26	336	35	345	3.28e-95	286
MsG0280006826.01.T01	MTR_7g078600	46.474	312	154	4	28	336	37	338	4.18e-94	283
MsG0280006826.01.T01	MTR_2g090890	44.023	343	175	9	1	334	1	335	5.04e-94	283
MsG0280006826.01.T01	MTR_2g083930	44.479	317	168	4	27	336	29	344	7.34e-94	283
MsG0280006826.01.T01	MTR_3g116080	45.860	314	162	6	25	335	39	347	5.80e-93	281
MsG0280006826.01.T01	MTR_1g018840	46.154	312	160	6	29	334	51	360	1.25e-92	283
MsG0280006826.01.T01	MTR_1g018840	44.578	332	175	7	10	334	31	360	1.89e-92	284
MsG0280006826.01.T01	MTR_3g075390	42.687	335	185	6	5	334	11	343	5.00e-92	279
MsG0280006826.01.T01	MTR_4g094918	44.937	316	166	6	25	334	27	340	5.60e-92	279
MsG0280006826.01.T01	MTR_3g112430	46.405	306	159	4	34	335	37	341	2.09e-91	280
MsG0280006826.01.T01	MTR_2g067900	47.706	327	154	8	20	333	1	323	7.85e-91	275
MsG0280006826.01.T01	MTR_4g104370	44.048	336	178	8	5	334	11	342	2.46e-90	275
MsG0280006826.01.T01	MTR_7g079230	43.114	334	173	7	9	336	14	336	1.18e-88	270
MsG0280006826.01.T01	MTR_2g066980	43.662	355	145	10	1	336	1	319	1.33e-88	269
MsG0280006826.01.T01	MTR_2g067560	49.240	329	140	11	20	328	1	322	1.56e-88	284
MsG0280006826.01.T01	MTR_2g064475	44.290	359	149	13	20	335	1	351	5.92e-87	266
MsG0280006826.01.T01	MTR_2g016180	41.231	325	175	7	20	335	38	355	2.13e-74	238
MsG0280006826.01.T01	MTR_2g016270	41.304	322	164	7	20	335	38	340	1.56e-72	232
MsG0280006826.01.T01	MTR_1g023810	48.954	239	115	6	99	333	26	261	8.43e-72	224
MsG0280006826.01.T01	MTR_2g015920	37.538	325	190	7	18	334	38	357	2.11e-68	219
MsG0280006826.01.T01	MTR_4g125300	40.673	327	169	12	20	336	38	349	1.31e-66	213
MsG0280006826.01.T01	MTR_4g065077	39.093	353	190	12	1	335	11	356	1.53e-66	214
MsG0280006826.01.T01	MTR_4g071060	38.438	320	169	9	18	316	29	341	7.24e-63	204
MsG0280006826.01.T01	MTR_1g023210	39.322	295	156	8	39	316	57	345	5.09e-62	202
MsG0280006826.01.T01	MTR_1g094135	39.297	313	164	11	36	329	59	364	5.77e-61	199
MsG0280006826.01.T01	MTR_8g086470	37.216	352	182	12	1	335	27	356	1.44e-60	198
MsG0280006826.01.T01	MTR_2g015930	35.671	328	193	10	18	334	37	357	1.44e-57	190
MsG0280006826.01.T01	MTR_7g078630	39.373	287	130	6	22	295	695	950	2.37e-53	188
MsG0280006826.01.T01	MTR_4g072790	34.323	303	165	9	18	316	33	305	4.83e-46	159
MsG0280006826.01.T01	MTR_4g072340	32.573	307	169	9	18	316	33	309	1.86e-43	152
MsG0280006826.01.T01	MTR_4g073660	32.573	307	169	9	18	316	32	308	1.93e-43	152
MsG0280006826.01.T01	MTR_1g025450	41.538	195	91	7	99	288	32	208	3.07e-38	143
MsG0280006826.01.T01	MTR_7g078580	53.608	97	45	0	238	334	4	100	3.82e-31	114
MsG0280006826.01.T01	MTR_7g111060	29.180	305	179	13	50	327	36	330	6.16e-27	109
MsG0280006826.01.T01	MTR_7g079130	53.846	91	41	1	245	334	6	96	6.90e-27	102
MsG0280006826.01.T01	MTR_1g042480	53.061	98	42	2	1	94	1	98	9.93e-27	102
MsG0280006826.01.T01	MTR_1g042360	53.061	98	42	2	1	94	1	98	9.93e-27	102
MsG0280006826.01.T01	MTR_7g111050	27.844	334	189	14	38	335	20	337	2.80e-26	107
MsG0280006826.01.T01	MTR_3g029560	31.579	209	120	3	132	336	49	238	2.40e-25	102
MsG0280006826.01.T01	MTR_1g054590	51.685	89	38	3	4	88	3	90	4.13e-22	89.7
MsG0280006826.01.T01	MTR_7g078310	38.732	142	74	5	73	210	113	245	4.31e-21	91.3
MsG0280006826.01.T01	MTR_4g023770	49.438	89	36	3	4	88	3	86	8.09e-20	83.6
MsG0280006826.01.T01	MTR_1g009480	50.000	90	40	3	5	90	6	94	1.11e-19	84.3
MsG0280006826.01.T01	MTR_2g016380	39.024	123	68	5	217	335	16	135	3.75e-18	82.8
MsG0280006826.01.T01	MTR_8g087510	35.433	127	80	2	162	287	23	148	5.08e-17	78.2
MsG0280006826.01.T01	MTR_7g111050	26.502	283	163	11	48	297	26	296	5.58e-17	80.5
MsG0280006826.01.T01	MTR_2g047960	45.455	88	47	1	125	211	2	89	1.12e-16	75.1
MsG0280006826.01.T01	MTR_1g025370	38.462	91	42	2	7	84	8	97	9.55e-16	72.4
MsG0280006826.01.T01	MTR_7g079260	48.611	72	21	2	261	332	7	62	5.11e-14	67.8
MsG0280006826.01.T01	MTR_3g082370	27.143	210	126	9	125	314	4	206	5.92e-12	65.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006826.01.T01	AT2G34080	51.754	342	153	6	3	334	4	343	3.96e-121	352
MsG0280006826.01.T01	AT2G27420	52.795	322	142	5	23	334	25	346	1.39e-114	336
MsG0280006826.01.T01	AT3G49340	50.296	338	153	5	10	334	4	339	9.10e-114	333
MsG0280006826.01.T01	AT1G29090	52.188	320	144	6	23	335	37	354	2.60e-110	325
MsG0280006826.01.T01	AT1G29080	52.063	315	143	5	27	335	33	345	2.96e-110	325
MsG0280006826.01.T01	AT5G45890	46.939	343	173	6	1	336	6	346	5.91e-109	322
MsG0280006826.01.T01	AT3G19390	44.606	343	170	6	3	335	13	345	1.01e-96	294
MsG0280006826.01.T01	AT1G29110	48.137	322	144	9	23	336	28	334	1.53e-96	290
MsG0280006826.01.T01	AT1G20850	47.452	314	159	6	25	335	43	353	6.97e-96	288
MsG0280006826.01.T01	AT5G43060	47.468	316	155	6	25	334	42	352	7.92e-96	292
MsG0280006826.01.T01	AT3G48340	45.133	339	176	8	3	334	7	342	1.26e-94	285
MsG0280006826.01.T01	AT4G35350	44.638	345	174	8	3	335	13	352	1.59e-94	285
MsG0280006826.01.T01	AT5G50260	44.767	344	177	8	1	334	1	341	3.68e-94	284
MsG0280006826.01.T01	AT4G23520	45.609	353	168	9	1	334	1	348	5.54e-94	284
MsG0280006826.01.T01	AT1G09850	46.429	308	160	4	29	334	28	332	4.57e-92	281
MsG0280006826.01.T01	AT1G47128	44.164	317	163	8	25	334	42	351	1.21e-90	279
MsG0280006826.01.T01	AT4G36880	43.598	328	173	7	18	334	34	360	4.75e-90	274
MsG0280006826.01.T01	AT4G11310	41.176	357	172	9	3	334	8	351	8.91e-90	273
MsG0280006826.01.T01	AT3G19400	45.426	317	163	6	25	335	36	348	9.44e-90	273
MsG0280006826.01.T01	AT4G11320	43.810	315	150	7	34	334	57	358	1.26e-88	270
MsG0280006826.01.T01	AT4G11320	43.810	315	150	7	34	334	57	358	1.26e-88	270
MsG0280006826.01.T01	AT3G48350	42.609	345	186	8	1	335	1	343	2.76e-86	264
MsG0280006826.01.T01	AT1G06260	44.109	331	168	8	15	334	17	341	4.67e-82	253
MsG0280006826.01.T01	AT3G43960	43.849	317	167	8	25	334	33	345	5.81e-80	248
MsG0280006826.01.T01	AT5G60360	42.593	324	167	11	20	336	46	357	2.97e-70	223
MsG0280006826.01.T01	AT5G60360	41.975	324	168	10	20	336	46	356	1.24e-68	219
MsG0280006826.01.T01	AT5G60360	42.384	302	159	9	20	314	46	339	6.27e-66	212
MsG0280006826.01.T01	AT4G35350	46.694	242	121	5	29	266	47	284	4.46e-65	207
MsG0280006826.01.T01	AT4G39090	38.644	295	158	8	39	316	57	345	2.30e-64	208
MsG0280006826.01.T01	AT3G45310	40.432	324	170	11	22	336	48	357	5.49e-63	204
MsG0280006826.01.T01	AT3G45310	39.815	324	171	10	22	336	48	356	2.70e-61	200
MsG0280006826.01.T01	AT2G21430	37.500	312	169	10	25	316	37	342	5.66e-61	199
MsG0280006826.01.T01	AT3G19400	43.089	246	131	5	25	264	36	278	2.35e-59	192
MsG0280006826.01.T01	AT3G54940	40.066	302	152	12	36	316	54	347	1.72e-58	193
MsG0280006826.01.T01	AT4G16190	38.889	306	162	8	39	327	61	358	3.18e-58	192
MsG0280006826.01.T01	AT3G48350	42.449	245	134	6	25	264	30	272	2.62e-54	180
MsG0280006826.01.T01	AT3G54940	38.428	229	123	7	36	252	54	276	1.98e-42	149
MsG0280006826.01.T01	AT4G01610	28.378	296	171	11	62	327	46	330	3.42e-28	112
MsG0280006826.01.T01	AT1G02305	27.609	297	180	9	62	329	49	339	5.42e-28	112
MsG0280006826.01.T01	AT4G01610	27.703	296	173	11	62	327	46	330	2.94e-26	107
MsG0280006826.01.T01	AT1G02300	30.476	210	119	7	140	327	146	350	3.06e-20	90.9
MsG0280006826.01.T01	AT2G22160	40.625	96	46	4	49	140	10	98	5.41e-13	65.1

Find 66 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATTTCATTTGATCATTTAAT+TGG	0.195265	2:-6801614	None:intergenic
TTGTTGGAATATCATCATTC+AGG	0.284103	2:-6800562	None:intergenic
TACATGGGAGATGTTTATTC+AGG	0.305565	2:+6801756	MsG0280006826.01.T01:CDS
ATTGGTTGATTAAGAATTCT+TGG	0.312011	2:+6801850	MsG0280006826.01.T01:CDS
TTAAATCAGAGTATGGATTT+AGG	0.312768	2:-6800448	None:intergenic
CAGCAATGGATGATAAAATA+TGG	0.313356	2:+6800314	MsG0280006826.01.T01:CDS
TCACTAGTTAAATCAGAGTA+TGG	0.325666	2:-6800455	None:intergenic
GAGTTTATTGCTTCACATAC+TGG	0.326687	2:+6800479	MsG0280006826.01.T01:CDS
AGAATTCTTGGGGTAAAGAT+TGG	0.334902	2:+6801862	MsG0280006826.01.T01:CDS
GTCTGACTACCTTCTTGATA+TGG	0.336745	2:-6801588	None:intergenic
GACAGTGTTCTTGACATGAT+TGG	0.347406	2:-6800266	None:intergenic
TTGGTTGATTAAGAATTCTT+GGG	0.374775	2:+6801851	MsG0280006826.01.T01:CDS
GAATTCTTGGGGTAAAGATT+GGG	0.376941	2:+6801863	MsG0280006826.01.T01:CDS
CTCATTATCTGAGCAACAAT+TGG	0.401955	2:+6801464	MsG0280006826.01.T01:CDS
ACTGCAATGCCAACTGATAC+TGG	0.406208	2:-6801714	None:intergenic
TCAGTCGTGGCTGCTGTAGA+AGG	0.411115	2:+6801411	MsG0280006826.01.T01:CDS
TAGCAGTTGTTGTTCATCAT+TGG	0.413217	2:-6801673	None:intergenic
TGTTTGCATGATTATCTTGT+GGG	0.419752	2:+6800232	MsG0280006826.01.T01:CDS
TGCCTCCAATCAAAATTTGT+TGG	0.420797	2:-6800578	None:intergenic
TGGGTGTGATGGAGGTAATA+TGG	0.436333	2:+6801509	MsG0280006826.01.T01:CDS
GGTTTGTATTATATATTTGA+AGG	0.448659	2:-6801538	None:intergenic
ACAGTGTTCTTGACATGATT+GGG	0.450300	2:-6800265	None:intergenic
GGTAAAGATTGGGGTGAAGA+AGG	0.460104	2:+6801873	MsG0280006826.01.T01:CDS
TGATGAATTTCAACATTACA+TGG	0.464191	2:+6801740	MsG0280006826.01.T01:CDS
TGTCTCACTAACAATACCTT+GGG	0.465163	2:-6801559	None:intergenic
AATATCATCATTCAGGTTGA+AGG	0.470988	2:-6800555	None:intergenic
GCAGTTACTGCAGTTGGTTA+CGG	0.478465	2:+6801804	MsG0280006826.01.T01:CDS
TACTGCAACTGACCTCATCT+TGG	0.480728	2:-6800531	None:intergenic
CTGTCTCACTAACAATACCT+TGG	0.493668	2:-6801560	None:intergenic
AGTTGTTGTTCATCATTGGC+AGG	0.496843	2:-6801669	None:intergenic
AACCATGCAGTTACTGCAGT+TGG	0.506721	2:+6801798	MsG0280006826.01.T01:CDS
AGGTTACATGAAGTTGTTGA+GGG	0.508816	2:+6801893	MsG0280006826.01.T01:CDS
CTGTTTGCATGATTATCTTG+TGG	0.513337	2:+6800231	MsG0280006826.01.T01:CDS
GCAATGCCACATTGACCTCC+TGG	0.513337	2:-6801927	None:intergenic
ATAGAGAATTTCAACAATGC+TGG	0.520071	2:+6800404	MsG0280006826.01.T01:CDS
TTGAGGGAAAGTGGTGAACC+AGG	0.520538	2:+6801909	MsG0280006826.01.T01:CDS
AATTCTTGGGGTAAAGATTG+GGG	0.530447	2:+6801864	MsG0280006826.01.T01:CDS
GGTTACGGTGTAAGTGAAGA+TGG	0.532156	2:+6801819	MsG0280006826.01.T01:CDS
GTGAAGATGGAACTAAGTAT+TGG	0.533019	2:+6801832	MsG0280006826.01.T01:CDS
AAGACATACCACAACTGCCT+TGG	0.539526	2:-6800628	None:intergenic
ATGAAGTTGTTGAGGGAAAG+TGG	0.542145	2:+6801900	MsG0280006826.01.T01:CDS
TGCAACTGACCTCATCTTGG+AGG	0.547643	2:-6800528	None:intergenic
GTTAAAGACCAAGGCAGTTG+TGG	0.558254	2:+6800620	MsG0280006826.01.T01:CDS
ACTGCCTTGGTCTTTAACAT+CGG	0.570004	2:-6800615	None:intergenic
GAACAGAACAATGGGTGTGA+TGG	0.572310	2:+6801498	MsG0280006826.01.T01:CDS
AAGGTTACATGAAGTTGTTG+AGG	0.582698	2:+6801892	MsG0280006826.01.T01:CDS
ACTGCGATGAACAGAACAAT+GGG	0.582764	2:+6801490	MsG0280006826.01.T01:CDS
ATATCATCATTCAGGTTGAA+GGG	0.586071	2:-6800554	None:intergenic
TGGTTGATTAAGAATTCTTG+GGG	0.586376	2:+6801852	MsG0280006826.01.T01:CDS
ACAGATTATCCATATCAAGA+AGG	0.601748	2:+6801579	MsG0280006826.01.T01:CDS
GATGTTTATTCAGGAACATG+TGG	0.602261	2:+6801765	MsG0280006826.01.T01:CDS
AACCAACTGCAGTAACTGCA+TGG	0.607601	2:-6801800	None:intergenic
GGTAACAAGAGTTACAAGCT+TGG	0.620609	2:+6800425	MsG0280006826.01.T01:CDS
GTATCAGTTGGCATTGCAGT+CGG	0.623362	2:+6801717	MsG0280006826.01.T01:CDS
GATGAATTTCAACATTACAT+GGG	0.623570	2:+6801741	MsG0280006826.01.T01:CDS
TTGTTGAAGCACATCAGCAA+TGG	0.625595	2:+6800300	MsG0280006826.01.T01:CDS
GACTTTCATCCTCCAAGATG+AGG	0.628604	2:+6800519	MsG0280006826.01.T01:CDS
GCACAACAACCAGTATCAGT+TGG	0.635741	2:+6801705	MsG0280006826.01.T01:CDS
GGTGCTGTGAAAATCAAGAC+TGG	0.639937	2:+6801432	MsG0280006826.01.T01:CDS
CAGAACAATGGGTGTGATGG+AGG	0.644692	2:+6801501	MsG0280006826.01.T01:CDS
AAATATATAATACAAACCCA+AGG	0.655643	2:+6801543	MsG0280006826.01.T01:CDS
TCATCTTGGAGGATGAAAGT+CGG	0.661178	2:-6800517	None:intergenic
GGTGAACCAGGAGGTCAATG+TGG	0.664219	2:+6801921	MsG0280006826.01.T01:CDS
GACTGCGATGAACAGAACAA+TGG	0.669619	2:+6801489	MsG0280006826.01.T01:CDS
GTTACCGATGTTAAAGACCA+AGG	0.675798	2:+6800611	MsG0280006826.01.T01:CDS
AGGGAAAGTGGTGAACCAGG+AGG	0.728920	2:+6801912	MsG0280006826.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAAGTTACATTTTAATATTA+AGG	+	Chr2:6801225-6801244	MsG0280006826.01.T01:intron	10.0%
!!!	TTTTGTGATATAAAATAAAA+TGG	-	Chr2:6800835-6800854	None:intergenic	10.0%
!!	AAATATCGAAAAGTTATTTA+AGG	+	Chr2:6801114-6801133	MsG0280006826.01.T01:intron	15.0%
!!	ATTTCATTTGATCATTTAAT+TGG	-	Chr2:6801617-6801636	None:intergenic	15.0%
!!	TGATATAAAATAAAATGGAA+TGG	-	Chr2:6800830-6800849	None:intergenic	15.0%
!!!	TATTTTTTAATTAGTCATCT+TGG	+	Chr2:6800668-6800687	MsG0280006826.01.T01:intron	15.0%
!!!	TTTAGATTTTTCTTTTTTGA+TGG	-	Chr2:6801058-6801077	None:intergenic	15.0%
!!	AAATATATAATACAAACCCA+AGG	+	Chr2:6801543-6801562	MsG0280006826.01.T01:CDS	20.0%
!!	GGTTTGTATTATATATTTGA+AGG	-	Chr2:6801541-6801560	None:intergenic	20.0%
!!!	AATAACTTTTCGATATTTGA+TGG	-	Chr2:6801112-6801131	None:intergenic	20.0%
!!!	ATATTCCAACAAATTTTGAT+TGG	+	Chr2:6800573-6800592	MsG0280006826.01.T01:CDS	20.0%
!!!	TATCATTCAATATGTTTTGT+AGG	+	Chr2:6801372-6801391	MsG0280006826.01.T01:intron	20.0%
!	ACAATGCATAAAAATATGCA+AGG	+	Chr2:6801010-6801029	MsG0280006826.01.T01:intron	25.0%
!	ATTGGTTGATTAAGAATTCT+TGG	+	Chr2:6801850-6801869	MsG0280006826.01.T01:CDS	25.0%
!	GATGAATTTCAACATTACAT+GGG	+	Chr2:6801741-6801760	MsG0280006826.01.T01:CDS	25.0%
!	GCATTATTGATGTGTTTATA+TGG	-	Chr2:6800909-6800928	None:intergenic	25.0%
!	TATGCTTCATTAAAAGTTCT+CGG	-	Chr2:6800870-6800889	None:intergenic	25.0%
!	TGATGAATTTCAACATTACA+TGG	+	Chr2:6801740-6801759	MsG0280006826.01.T01:CDS	25.0%
!	TGATGTGTTTATATGGTATT+TGG	-	Chr2:6800902-6800921	None:intergenic	25.0%
!	TTAAATCAGAGTATGGATTT+AGG	-	Chr2:6800451-6800470	None:intergenic	25.0%
!	TTGGTTGATTAAGAATTCTT+GGG	+	Chr2:6801851-6801870	MsG0280006826.01.T01:CDS	25.0%
!!!	AGATTTTTCTTTTTTGATGG+TGG	-	Chr2:6801055-6801074	None:intergenic	25.0%
	AACAAAGTCTCCAATATGTT+TGG	+	Chr2:6800731-6800750	MsG0280006826.01.T01:intron	30.0%
	ACAGATTATCCATATCAAGA+AGG	+	Chr2:6801579-6801598	MsG0280006826.01.T01:CDS	30.0%
	ATAAAAATATGCAAGGTCTG+GGG	+	Chr2:6801017-6801036	MsG0280006826.01.T01:intron	30.0%
	ATAGAGAATTTCAACAATGC+TGG	+	Chr2:6800404-6800423	MsG0280006826.01.T01:CDS	30.0%
	CAGCAATGGATGATAAAATA+TGG	+	Chr2:6800314-6800333	MsG0280006826.01.T01:CDS	30.0%
	CATAAAAATATGCAAGGTCT+GGG	+	Chr2:6801016-6801035	MsG0280006826.01.T01:intron	30.0%
	TACCGAAAATCCAAACATAT+TGG	-	Chr2:6800744-6800763	None:intergenic	30.0%
	TATTGGAGACTTTGTTAGTT+TGG	-	Chr2:6800727-6800746	None:intergenic	30.0%
	TCACTAGTTAAATCAGAGTA+TGG	-	Chr2:6800458-6800477	None:intergenic	30.0%
	TGGTTGATTAAGAATTCTTG+GGG	+	Chr2:6801852-6801871	MsG0280006826.01.T01:CDS	30.0%
	TGTTTGCATGATTATCTTGT+GGG	+	Chr2:6800232-6800251	MsG0280006826.01.T01:CDS	30.0%
	TTGTTGGAATATCATCATTC+AGG	-	Chr2:6800565-6800584	None:intergenic	30.0%
!	ATGTTTTGTAGGATGTTGTT+GGG	+	Chr2:6801383-6801402	MsG0280006826.01.T01:intron	30.0%
!	CTCCAATATGTTTGGATTTT+CGG	+	Chr2:6800739-6800758	MsG0280006826.01.T01:intron	30.0%
!	TATGTTTTGTAGGATGTTGT+TGG	+	Chr2:6801382-6801401	MsG0280006826.01.T01:intron	30.0%
!	TGTTTGGATTTTCGGTATAA+AGG	+	Chr2:6800747-6800766	MsG0280006826.01.T01:intron	30.0%
!!	AATATCATCATTCAGGTTGA+AGG	-	Chr2:6800558-6800577	None:intergenic	30.0%
!!	ATATCATCATTCAGGTTGAA+GGG	-	Chr2:6800557-6800576	None:intergenic	30.0%
!!	TGTAATTTCTAGCCTTAGAT+AGG	-	Chr2:6801256-6801275	None:intergenic	30.0%
!!!	TTCCAACAAATTTTGATTGG+AGG	+	Chr2:6800576-6800595	MsG0280006826.01.T01:CDS	30.0%
	AAAAGTTCTCGGAGGATATT+TGG	-	Chr2:6800859-6800878	None:intergenic	35.0%
	AAGGTTACATGAAGTTGTTG+AGG	+	Chr2:6801892-6801911	MsG0280006826.01.T01:CDS	35.0%
	AATTCTTGGGGTAAAGATTG+GGG	+	Chr2:6801864-6801883	MsG0280006826.01.T01:CDS	35.0%
	ACAGTGTTCTTGACATGATT+GGG	-	Chr2:6800268-6800287	None:intergenic	35.0%
	AGAATTCTTGGGGTAAAGAT+TGG	+	Chr2:6801862-6801881	MsG0280006826.01.T01:CDS	35.0%
	AGGTTACATGAAGTTGTTGA+GGG	+	Chr2:6801893-6801912	MsG0280006826.01.T01:CDS	35.0%
	ATTAAGGAACCACCTATCTA+AGG	+	Chr2:6801241-6801260	MsG0280006826.01.T01:intron	35.0%
	CTCATTATCTGAGCAACAAT+TGG	+	Chr2:6801464-6801483	MsG0280006826.01.T01:CDS	35.0%
	CTGTTTGCATGATTATCTTG+TGG	+	Chr2:6800231-6800250	MsG0280006826.01.T01:CDS	35.0%
	GAATTCTTGGGGTAAAGATT+GGG	+	Chr2:6801863-6801882	MsG0280006826.01.T01:CDS	35.0%
	GAGTTTATTGCTTCACATAC+TGG	+	Chr2:6800479-6800498	MsG0280006826.01.T01:CDS	35.0%
	GATGTTTATTCAGGAACATG+TGG	+	Chr2:6801765-6801784	MsG0280006826.01.T01:CDS	35.0%
	GCATAAAAATATGCAAGGTC+TGG	+	Chr2:6801015-6801034	MsG0280006826.01.T01:intron	35.0%
	GGTATAAAGGTTGAATGACA+TGG	+	Chr2:6800760-6800779	MsG0280006826.01.T01:intron	35.0%
	GTGAAGATGGAACTAAGTAT+TGG	+	Chr2:6801832-6801851	MsG0280006826.01.T01:CDS	35.0%
	TAATTAGTCATCTTGGAGCA+TGG	+	Chr2:6800675-6800694	MsG0280006826.01.T01:intron	35.0%
	TACATGGGAGATGTTTATTC+AGG	+	Chr2:6801756-6801775	MsG0280006826.01.T01:CDS	35.0%
	TGCCTCCAATCAAAATTTGT+TGG	-	Chr2:6800581-6800600	None:intergenic	35.0%
	TGTCTCACTAACAATACCTT+GGG	-	Chr2:6801562-6801581	None:intergenic	35.0%
!	CTTTTTGCGTTTCTCTAACT+CGG	-	Chr2:6800360-6800379	None:intergenic	35.0%
!	TAGCAGTTGTTGTTCATCAT+TGG	-	Chr2:6801676-6801695	None:intergenic	35.0%
!!	AATTTCTAGCCTTAGATAGG+TGG	-	Chr2:6801253-6801272	None:intergenic	35.0%
!!!	AATTTTGATTGGAGGCAACA+AGG	+	Chr2:6800584-6800603	MsG0280006826.01.T01:CDS	35.0%
!!!	TTTTCTTTTTTGATGGTGGC+CGG	-	Chr2:6801051-6801070	None:intergenic	35.0%
	ACTGCGATGAACAGAACAAT+GGG	+	Chr2:6801490-6801509	MsG0280006826.01.T01:CDS	40.0%
	ATGAAGTTGTTGAGGGAAAG+TGG	+	Chr2:6801900-6801919	MsG0280006826.01.T01:CDS	40.0%
	CTGTCTCACTAACAATACCT+TGG	-	Chr2:6801563-6801582	None:intergenic	40.0%
	GACAGTGTTCTTGACATGAT+TGG	-	Chr2:6800269-6800288	None:intergenic	40.0%
	GCACAAACACTGATCGAATT+AGG	-	Chr2:6801168-6801187	None:intergenic	40.0%
	GCTTCATTAAAAGTTCTCGG+AGG	-	Chr2:6800867-6800886	None:intergenic	40.0%
	GGTAACAAGAGTTACAAGCT+TGG	+	Chr2:6800425-6800444	MsG0280006826.01.T01:CDS	40.0%
	GTCTGACTACCTTCTTGATA+TGG	-	Chr2:6801591-6801610	None:intergenic	40.0%
	GTTACCGATGTTAAAGACCA+AGG	+	Chr2:6800611-6800630	MsG0280006826.01.T01:CDS	40.0%
	TCATCTTGGAGGATGAAAGT+CGG	-	Chr2:6800520-6800539	None:intergenic	40.0%
	TTGTTGAAGCACATCAGCAA+TGG	+	Chr2:6800300-6800319	MsG0280006826.01.T01:CDS	40.0%
!	ACTGCCTTGGTCTTTAACAT+CGG	-	Chr2:6800618-6800637	None:intergenic	40.0%
!	AGTTGTTGTTCATCATTGGC+AGG	-	Chr2:6801672-6801691	None:intergenic	40.0%
!!!	TTTCTTTTTTGATGGTGGCC+GGG	-	Chr2:6801050-6801069	None:intergenic	40.0%
	AACCAACTGCAGTAACTGCA+TGG	-	Chr2:6801803-6801822	None:intergenic	45.0%
	AACCATGCAGTTACTGCAGT+TGG	+	Chr2:6801798-6801817	MsG0280006826.01.T01:CDS	45.0%
	AAGACATACCACAACTGCCT+TGG	-	Chr2:6800631-6800650	None:intergenic	45.0%
	ACTGCAATGCCAACTGATAC+TGG	-	Chr2:6801717-6801736	None:intergenic	45.0%
	GAACAGAACAATGGGTGTGA+TGG	+	Chr2:6801498-6801517	MsG0280006826.01.T01:CDS	45.0%
	GACTGCGATGAACAGAACAA+TGG	+	Chr2:6801489-6801508	MsG0280006826.01.T01:CDS	45.0%
	GACTTTCATCCTCCAAGATG+AGG	+	Chr2:6800519-6800538	MsG0280006826.01.T01:CDS	45.0%
	GCACAACAACCAGTATCAGT+TGG	+	Chr2:6801705-6801724	MsG0280006826.01.T01:CDS	45.0%
	GCAGTTACTGCAGTTGGTTA+CGG	+	Chr2:6801804-6801823	MsG0280006826.01.T01:CDS	45.0%
	GGTAAAGATTGGGGTGAAGA+AGG	+	Chr2:6801873-6801892	MsG0280006826.01.T01:CDS	45.0%
	GGTTACGGTGTAAGTGAAGA+TGG	+	Chr2:6801819-6801838	MsG0280006826.01.T01:CDS	45.0%
	GTATCAGTTGGCATTGCAGT+CGG	+	Chr2:6801717-6801736	MsG0280006826.01.T01:CDS	45.0%
	GTTAAAGACCAAGGCAGTTG+TGG	+	Chr2:6800620-6800639	MsG0280006826.01.T01:CDS	45.0%
	TACTGCAACTGACCTCATCT+TGG	-	Chr2:6800534-6800553	None:intergenic	45.0%
!	GGTGCTGTGAAAATCAAGAC+TGG	+	Chr2:6801432-6801451	MsG0280006826.01.T01:CDS	45.0%
!	TGGGTGTGATGGAGGTAATA+TGG	+	Chr2:6801509-6801528	MsG0280006826.01.T01:CDS	45.0%
!	TTGTTGGGCATTTTCAGTCG+TGG	+	Chr2:6801398-6801417	MsG0280006826.01.T01:CDS	45.0%
!!!	TTCTTTTTTGATGGTGGCCG+GGG	-	Chr2:6801049-6801068	None:intergenic	45.0%
!!	AATAATAAATATAAACATAA+TGG	+	Chr2:6800987-6801006	MsG0280006826.01.T01:intron	5.0%
	CAGAACAATGGGTGTGATGG+AGG	+	Chr2:6801501-6801520	MsG0280006826.01.T01:CDS	50.0%
	TGCAACTGACCTCATCTTGG+AGG	-	Chr2:6800531-6800550	None:intergenic	50.0%
	TTGAGGGAAAGTGGTGAACC+AGG	+	Chr2:6801909-6801928	MsG0280006826.01.T01:CDS	50.0%
	AGGGAAAGTGGTGAACCAGG+AGG	+	Chr2:6801912-6801931	MsG0280006826.01.T01:CDS	55.0%
	GCAATGCCACATTGACCTCC+TGG	-	Chr2:6801930-6801949	None:intergenic	55.0%
	GGTGAACCAGGAGGTCAATG+TGG	+	Chr2:6801921-6801940	MsG0280006826.01.T01:CDS	55.0%
	TCAGTCGTGGCTGCTGTAGA+AGG	+	Chr2:6801411-6801430	MsG0280006826.01.T01:CDS	55.0%
!	AAGGTCTGGGGTTCGAACCC+CGG	+	Chr2:6801029-6801048	MsG0280006826.01.T01:intron	60.0%

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	6800215	6801977	6800215	ID=MsG0280006826.01;Name=MsG0280006826.01
Chr2	mRNA	6800215	6801977	6800215	ID=MsG0280006826.01.T01;Parent=MsG0280006826.01;Name=MsG0280006826.01.T01;_AED=0.26;_eAED=0.26;_QI=0\|0\|0\|1\|1\|1\|2\|0\|336
Chr2	exon	6800215	6800641	6800215	ID=MsG0280006826.01.T01:exon:2848;Parent=MsG0280006826.01.T01
Chr2	exon	6801394	6801977	6801394	ID=MsG0280006826.01.T01:exon:2849;Parent=MsG0280006826.01.T01
Chr2	CDS	6800215	6800641	6800215	ID=MsG0280006826.01.T01:cds;Parent=MsG0280006826.01.T01
Chr2	CDS	6801394	6801977	6801394	ID=MsG0280006826.01.T01:cds;Parent=MsG0280006826.01.T01

Gene Sequence

>MsG0280006826.01.T01

ATGAAGTTTTTTATTGCTGTTTGCATGATTATCTTGTGGGCATGTGCATACCCAATCATGTCAAGAACACTGTCTGAATCATCTGTTGTTGAAGCACATCAGCAATGGATGATAAAATATGGACGCACATACACAAATAGTTCCGAGTTAGAGAAACGCAAAAAGATATTTAAAGAGAATTTAGAATACATAGAGAATTTCAACAATGCTGGTAACAAGAGTTACAAGCTTGGCCTAAATCCATACTCTGATTTAACTAGTGAAGAGTTTATTGCTTCACATACTGGACTCAAAGTTTCTGACCGACTTTCATCCTCCAAGATGAGGTCAGTTGCAGTACCCTTCAACCTGAATGATGATATTCCAACAAATTTTGATTGGAGGCAACAAGGAGCTGTTACCGATGTTAAAGACCAAGGCAGTTGTGGATGTTGTTGGGCATTTTCAGTCGTGGCTGCTGTAGAAGGTGCTGTGAAAATCAAGACTGGTGAGTTGATCTCATTATCTGAGCAACAATTGGTTGACTGCGATGAACAGAACAATGGGTGTGATGGAGGTAATATGGATATTGCCTTCAAATATATAATACAAACCCAAGGTATTGTTAGTGAGACAGATTATCCATATCAAGAAGGTAGTCAGACATGCCAATTAAATGATCAAATGAAATTCGCAGCTCAAATAACAAATTTTGTAGACGTACCTGCCAATGATGAACAACAACTGCTACAAGCTGTAGCACAACAACCAGTATCAGTTGGCATTGCAGTCGGTGATGAATTTCAACATTACATGGGAGATGTTTATTCAGGAACATGTGGACAATCAATGAACCATGCAGTTACTGCAGTTGGTTACGGTGTAAGTGAAGATGGAACTAAGTATTGGTTGATTAAGAATTCTTGGGGTAAAGATTGGGGTGAAGAAGGTTACATGAAGTTGTTGAGGGAAAGTGGTGAACCAGGAGGTCAATGTGGCATTGCTGCACATGCTTCTTATCCCACCATATAA

Protein sequence

>MsG0280006826.01.T01

MKFFIAVCMIILWACAYPIMSRTLSESSVVEAHQQWMIKYGRTYTNSSELEKRKKIFKENLEYIENFNNAGNKSYKLGLNPYSDLTSEEFIASHTGLKVSDRLSSSKMRSVAVPFNLNDDIPTNFDWRQQGAVTDVKDQGSCGCCWAFSVVAAVEGAVKIKTGELISLSEQQLVDCDEQNNGCDGGNMDIAFKYIIQTQGIVSETDYPYQEGSQTCQLNDQMKFAAQITNFVDVPANDEQQLLQAVAQQPVSVGIAVGDEFQHYMGDVYSGTCGQSMNHAVTAVGYGVSEDGTKYWLIKNSWGKDWGEEGYMKLLRESGEPGGQCGIAAHASYPTI*