AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047338.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047338.01.T01 MTR_4g125300 82.336 351 16 5 43 391 44 350 0.0 569
MsG0880047338.01.T01 MTR_4g047610 35.694 353 162 15 52 389 40 342 6.24e-51 174
MsG0880047338.01.T01 MTR_4g079470 35.735 347 159 15 57 389 48 344 1.43e-49 171
MsG0880047338.01.T01 MTR_4g079770 35.735 347 159 15 57 389 48 344 1.56e-49 171
MsG0880047338.01.T01 MTR_5g022560 34.247 365 171 15 40 389 33 343 2.45e-49 170
MsG0880047338.01.T01 MTR_4g079800 36.311 347 157 17 57 389 48 344 3.67e-49 169
MsG0880047338.01.T01 MTR_4g094918 35.411 353 157 14 56 389 41 341 4.74e-49 170
MsG0880047338.01.T01 MTR_3g075390 34.503 342 158 12 64 389 53 344 1.18e-48 169
MsG0880047338.01.T01 MTR_4g079440 34.770 348 172 10 50 390 46 345 1.90e-48 167
MsG0880047338.01.T01 MTR_1g107550 36.158 354 152 14 56 389 56 355 9.67e-48 169
MsG0880047338.01.T01 MTR_4g080730 31.988 347 178 11 52 389 42 339 5.66e-47 164
MsG0880047338.01.T01 MTR_4g080700 31.700 347 179 11 52 389 42 339 6.98e-47 163
MsG0880047338.01.T01 MTR_1g018840 33.155 374 174 15 38 389 42 361 5.78e-46 164
MsG0880047338.01.T01 MTR_1g018840 33.422 374 173 15 38 389 42 361 8.85e-46 164
MsG0880047338.01.T01 MTR_4g107930 33.994 353 168 14 52 389 42 344 2.68e-45 159
MsG0880047338.01.T01 MTR_3g112430 33.427 356 171 13 50 389 36 341 7.11e-45 160
MsG0880047338.01.T01 MTR_3g116080 32.194 351 177 11 50 389 47 347 8.88e-45 158
MsG0880047338.01.T01 MTR_2g015920 30.028 353 187 10 50 389 53 358 4.17e-44 157
MsG0880047338.01.T01 MTR_3g102220 34.174 357 158 16 56 389 59 361 2.16e-43 157
MsG0880047338.01.T01 MTR_1g023210 33.521 355 160 13 50 381 51 352 2.30e-43 155
MsG0880047338.01.T01 MTR_4g071060 33.607 366 154 14 50 386 48 353 2.89e-43 154
MsG0880047338.01.T01 MTR_4g080360 32.113 355 172 15 52 389 39 341 7.44e-43 153
MsG0880047338.01.T01 MTR_2g075830 33.913 345 168 13 56 389 45 340 3.99e-42 151
MsG0880047338.01.T01 MTR_4g104370 33.236 343 162 13 63 389 52 343 3.06e-41 149
MsG0880047338.01.T01 MTR_2g090890 32.759 348 176 12 50 389 39 336 1.20e-40 147
MsG0880047338.01.T01 MTR_1g094135 31.593 364 176 11 50 391 56 368 2.39e-40 147
MsG0880047338.01.T01 MTR_2g015850 33.602 372 170 17 41 390 48 364 8.66e-40 145
MsG0880047338.01.T01 MTR_2g016270 31.143 350 171 12 50 389 51 340 1.76e-39 147
MsG0880047338.01.T01 MTR_2g016180 30.878 353 183 12 50 389 51 355 5.46e-38 143
MsG0880047338.01.T01 MTR_2g083930 30.055 366 187 14 44 390 29 344 8.60e-38 139
MsG0880047338.01.T01 MTR_2g015930 28.889 360 183 11 50 389 52 358 8.64e-37 137
MsG0880047338.01.T01 MTR_7g078600 31.429 350 178 12 50 390 42 338 1.28e-36 136
MsG0880047338.01.T01 MTR_7g079230 32.277 347 168 14 56 390 45 336 2.29e-36 135
MsG0880047338.01.T01 MTR_4g065077 29.679 374 194 12 33 389 35 356 3.61e-35 133
MsG0880047338.01.T01 MTR_8g086470 28.533 368 190 12 33 389 51 356 1.55e-30 120
MsG0880047338.01.T01 MTR_2g067900 29.288 379 183 16 38 390 8 327 2.11e-29 116
MsG0880047338.01.T01 MTR_2g067560 28.804 368 166 14 50 382 16 322 3.00e-29 120
MsG0880047338.01.T01 MTR_4g072790 29.598 348 156 12 50 386 48 317 5.16e-27 110
MsG0880047338.01.T01 MTR_2g064475 28.040 403 182 17 38 390 8 352 7.49e-26 107
MsG0880047338.01.T01 MTR_4g073660 29.143 350 159 13 50 386 47 320 3.55e-24 102
MsG0880047338.01.T01 MTR_4g072340 29.143 350 159 13 50 386 48 321 3.98e-24 102
MsG0880047338.01.T01 MTR_7g111060 36.279 215 118 7 171 381 131 330 6.45e-24 102
MsG0880047338.01.T01 MTR_7g111050 30.636 346 196 16 48 381 14 327 3.16e-21 94.4
MsG0880047338.01.T01 MTR_1g023810 31.061 264 125 10 130 387 49 261 6.08e-21 92.0
MsG0880047338.01.T01 MTR_7g078630 28.852 305 155 10 43 346 699 942 1.65e-19 91.3
MsG0880047338.01.T01 MTR_7g078580 42.157 102 49 5 293 389 5 101 6.00e-19 82.8
MsG0880047338.01.T01 MTR_2g066980 25.205 365 158 15 57 391 41 320 4.48e-17 81.6
MsG0880047338.01.T01 MTR_7g079130 43.478 92 42 5 304 389 10 97 2.66e-16 74.3
MsG0880047338.01.T01 MTR_2g015840 42.718 103 49 5 293 390 175 272 1.15e-14 73.9
MsG0880047338.01.T01 MTR_2g016380 34.286 105 63 3 289 388 31 134 3.93e-14 72.0
MsG0880047338.01.T01 MTR_7g078310 32.716 162 85 6 78 236 106 246 2.43e-12 67.0
MsG0880047338.01.T01 MTR_8g087510 34.400 125 66 3 186 300 24 142 3.95e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047338.01.T01 AT3G45310 65.812 351 74 5 43 391 52 358 3.24e-164 464
MsG0880047338.01.T01 AT3G45310 65.527 351 74 6 43 391 52 357 1.38e-161 458
MsG0880047338.01.T01 AT5G60360 62.534 371 92 6 24 391 32 358 8.38e-161 456
MsG0880047338.01.T01 AT5G60360 62.264 371 92 7 24 391 32 357 2.74e-158 449
MsG0880047338.01.T01 AT5G60360 61.944 360 90 6 24 380 32 347 2.69e-152 434
MsG0880047338.01.T01 AT1G47128 33.333 372 183 14 32 389 32 352 1.87e-49 173
MsG0880047338.01.T01 AT3G48340 35.362 345 154 13 63 389 50 343 6.04e-49 169
MsG0880047338.01.T01 AT5G43060 37.313 335 148 14 66 389 70 353 2.09e-48 171
MsG0880047338.01.T01 AT4G23520 34.054 370 177 16 36 389 31 349 3.01e-48 167
MsG0880047338.01.T01 AT3G19400 36.416 346 153 15 59 388 53 347 3.09e-48 167
MsG0880047338.01.T01 AT1G06260 34.188 351 169 11 50 389 43 342 1.75e-47 165
MsG0880047338.01.T01 AT3G54940 34.247 365 160 13 41 381 46 354 1.57e-46 163
MsG0880047338.01.T01 AT1G09850 32.764 351 176 11 50 389 32 333 6.05e-46 163
MsG0880047338.01.T01 AT4G36880 34.302 344 155 14 66 389 69 361 1.60e-45 161
MsG0880047338.01.T01 AT5G50260 35.088 342 158 14 63 389 50 342 1.98e-45 160
MsG0880047338.01.T01 AT3G19390 34.239 368 177 16 36 389 29 345 3.59e-45 162
MsG0880047338.01.T01 AT4G35350 33.807 352 171 13 50 389 51 352 3.59e-44 157
MsG0880047338.01.T01 AT5G45890 34.262 359 164 15 52 390 40 346 5.13e-44 156
MsG0880047338.01.T01 AT1G20850 33.333 354 171 15 50 389 51 353 6.46e-44 156
MsG0880047338.01.T01 AT4G11320 31.217 378 180 12 34 389 40 359 2.03e-42 152
MsG0880047338.01.T01 AT4G11320 31.217 378 180 12 34 389 40 359 2.03e-42 152
MsG0880047338.01.T01 AT2G21430 32.123 358 171 12 50 386 48 354 3.04e-41 149
MsG0880047338.01.T01 AT3G48350 34.971 346 148 17 66 389 53 343 8.27e-41 148
MsG0880047338.01.T01 AT1G29090 32.964 361 164 15 52 389 49 354 1.31e-40 147
MsG0880047338.01.T01 AT4G11310 31.492 362 182 12 43 389 42 352 2.43e-40 147
MsG0880047338.01.T01 AT1G29080 33.523 352 165 15 56 389 45 345 4.47e-40 145
MsG0880047338.01.T01 AT3G43960 32.880 368 185 16 36 389 27 346 8.51e-40 145
MsG0880047338.01.T01 AT1G29110 30.812 357 165 14 52 389 40 333 1.18e-39 144
MsG0880047338.01.T01 AT4G39090 32.011 353 168 12 50 381 51 352 4.02e-39 144
MsG0880047338.01.T01 AT2G34080 31.880 367 168 16 45 389 38 344 7.71e-38 140
MsG0880047338.01.T01 AT2G27420 31.728 353 176 15 56 389 41 347 1.36e-36 136
MsG0880047338.01.T01 AT3G49340 30.851 376 186 17 34 389 19 340 1.40e-36 136
MsG0880047338.01.T01 AT4G16190 30.110 362 175 13 50 386 55 363 6.06e-33 127
MsG0880047338.01.T01 AT3G54940 37.447 235 112 8 41 260 46 260 2.82e-31 120
MsG0880047338.01.T01 AT3G19400 33.824 272 125 11 59 320 53 279 1.21e-26 108
MsG0880047338.01.T01 AT4G35350 32.509 283 136 10 50 324 51 286 3.85e-26 107
MsG0880047338.01.T01 AT1G02300 36.937 222 107 10 171 381 151 350 7.57e-24 102
MsG0880047338.01.T01 AT1G02305 33.937 221 115 9 171 381 134 333 6.07e-23 99.4
MsG0880047338.01.T01 AT4G01610 34.884 215 121 7 171 381 131 330 1.09e-21 95.9
MsG0880047338.01.T01 AT4G01610 34.884 215 121 7 171 381 131 330 1.27e-21 95.5
MsG0880047338.01.T01 AT3G48350 32.500 280 121 13 66 328 53 281 5.72e-21 92.4

Find 117 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACAGAGACATTATTTATT+TGG 0.173997 8:+84883979 MsG0880047338.01.T01:three_prime_UTR
CCCTGATATGTAGCAATTAA+AGG 0.185126 8:+84884010 MsG0880047338.01.T01:three_prime_UTR
TCCTTTAATTGCTACATATC+AGG 0.198235 8:-84884011 None:intergenic
ATTCACAGGGGTAGCCTTTC+GGG 0.203237 8:-84883784 None:intergenic
CTATCCTGTTGTGGCCTAAA+TGG 0.240163 8:+84883744 MsG0880047338.01.T01:exon
ATTCTTCTGTAAAATAAGTT+TGG 0.294854 8:+84883883 MsG0880047338.01.T01:three_prime_UTR
CACATCCTTCCGTACCATTT+AGG 0.302586 8:-84883758 None:intergenic
ACTTGGAGAATGTCTGTCTT+AGG 0.320346 8:+84884061 MsG0880047338.01.T01:three_prime_UTR
GCGGATCATGCTGGACATTC+AGG 0.322819 8:+84881903 MsG0880047338.01.T01:CDS
AATTCACAGGGGTAGCCTTT+CGG 0.340417 8:-84883785 None:intergenic
CTCCATTACTTGATAGTTTG+CGG 0.340627 8:+84884245 MsG0880047338.01.T01:three_prime_UTR
CTGCAGCACAACTGGAGCTT+TGG 0.347290 8:+84882428 MsG0880047338.01.T01:CDS
TATCCCTACACTGGACAAAA+TGG 0.356510 8:+84882612 MsG0880047338.01.T01:CDS
GCTCAATCCGGCGGCGGCGG+TGG 0.358129 8:-84880233 None:intergenic
GGTGTGTGTTTCTCATTACT+TGG 0.360547 8:+84884044 MsG0880047338.01.T01:three_prime_UTR
ACTGTCATCTGCAGCACAAC+TGG 0.364159 8:+84882420 MsG0880047338.01.T01:CDS
TGGCTACTTCAAAATGGAAA+TGG 0.373295 8:+84883428 MsG0880047338.01.T01:CDS
TGACCATGGCTACTTCAAAA+TGG 0.374145 8:+84883422 MsG0880047338.01.T01:CDS
GTTATTGTATGCAGAAAGAT+TGG 0.377542 8:+84881838 MsG0880047338.01.T01:intron
CATGGAAAAGCAGCTTCTTC+AGG 0.383850 8:+84880291 MsG0880047338.01.T01:CDS
ACCTCAAATGCCACACTAAC+GGG 0.384523 8:-84883068 None:intergenic
GCTGTTCTTGCTGTTGGGTA+TGG 0.386199 8:+84883342 MsG0880047338.01.T01:CDS
TGCGTGGCCACCGCCGCCGC+CGG 0.394631 8:+84880226 MsG0880047338.01.T01:CDS
GGCTACTTCAAAATGGAAAT+GGG 0.395439 8:+84883429 MsG0880047338.01.T01:CDS
AAACTCATGGGGAGGTGAAT+GGG 0.395979 8:+84883398 MsG0880047338.01.T01:CDS
TTTAATGTATTCAAAGGCTT+GGG 0.400464 8:-84882559 None:intergenic
AATCATGCTGTTCTTGCTGT+TGG 0.406771 8:+84883336 MsG0880047338.01.T01:CDS
AACGTTGCTGTTCAAGTCCT+TGG 0.409619 8:+84882657 MsG0880047338.01.T01:CDS
TTCAATAACTTTGGCTGCAA+TGG 0.411469 8:+84882525 MsG0880047338.01.T01:CDS
CAGTGTCATTGTTACAGATA+TGG 0.414671 8:-84882401 None:intergenic
ATTTAATGTATTCAAAGGCT+TGG 0.415754 8:-84882560 None:intergenic
TTGAAGATGGTGTACCATAT+TGG 0.416176 8:+84883367 MsG0880047338.01.T01:CDS
TAGGCACAGACAAATGAAAA+TGG 0.417508 8:+84884080 MsG0880047338.01.T01:three_prime_UTR
TCCCGTTAGTGTGGCATTTG+AGG 0.421683 8:+84883067 MsG0880047338.01.T01:CDS
ATCATGCTGTTCTTGCTGTT+GGG 0.423797 8:+84883337 MsG0880047338.01.T01:CDS
TCCACGACTCCAATCCTATT+CGG 0.426027 8:+84880257 MsG0880047338.01.T01:CDS
CCTTTAATTGCTACATATCA+GGG 0.430871 8:-84884010 None:intergenic
CGTACCATTTAGGCCACAAC+AGG 0.448204 8:-84883748 None:intergenic
AGCAGCTTCTTCAGGTCATC+GGG 0.454761 8:+84880299 MsG0880047338.01.T01:CDS
AATAACTTTGGCTGCAATGG+TGG 0.455761 8:+84882528 MsG0880047338.01.T01:CDS
TATATGATGAATAGAAGAAA+TGG 0.461121 8:-84883916 None:intergenic
CAGAAAGATTGGAGGAAAGA+AGG 0.463829 8:+84881849 MsG0880047338.01.T01:intron
AAAACTCATGGGGAGGTGAA+TGG 0.463951 8:+84883397 MsG0880047338.01.T01:CDS
CAGCAGCTAGTGGACTGTGC+TGG 0.465005 8:+84882498 MsG0880047338.01.T01:CDS
ATGTCGGAGACCATCCGAAT+AGG 0.466748 8:-84880271 None:intergenic
TCAGCTTACGCACAGGCCTT+CGG 0.468118 8:+84882453 MsG0880047338.01.T01:CDS
ATCTACTAATAAGAAACGTC+TGG 0.469134 8:+84880440 MsG0880047338.01.T01:CDS
GCTGGTGCTTTCAATAACTT+TGG 0.475033 8:+84882516 MsG0880047338.01.T01:CDS
AAGGTATAGTCAGTGAAGTA+AGG 0.477319 8:+84881868 MsG0880047338.01.T01:CDS
ACATGCAAGGTGGAATTCAC+AGG 0.480420 8:-84883798 None:intergenic
GAAGCTCAATCCGGCGGCGG+CGG 0.484936 8:-84880236 None:intergenic
AATTGTTCTGCTACTCTCAA+GGG 0.485400 8:+84880621 MsG0880047338.01.T01:CDS
GCAATTAAAGGATAGCATGC+TGG 0.495677 8:+84884022 MsG0880047338.01.T01:three_prime_UTR
TCTTTCTGAGCAGCAGCTAG+TGG 0.496747 8:+84882488 MsG0880047338.01.T01:CDS
ATTGTATTTAATGTATTCAA+AGG 0.503015 8:-84882565 None:intergenic
TTGTTCATCCTATCCTGTTG+TGG 0.503980 8:+84883735 MsG0880047338.01.T01:CDS
GCTCGCTTTGCTAACAGATA+CGG 0.506701 8:+84880345 MsG0880047338.01.T01:CDS
AAGGCCACTGCGGATCATGC+TGG 0.516867 8:+84881894 MsG0880047338.01.T01:CDS
CACCTCAAATGCCACACTAA+CGG 0.517450 8:-84883069 None:intergenic
GGAGACCATCCGAATAGGAT+TGG 0.519715 8:-84880266 None:intergenic
GACTTCAGATTATACAAGAA+AGG 0.522674 8:+84883098 MsG0880047338.01.T01:CDS
AAGCAGCTTCTTCAGGTCAT+CGG 0.525486 8:+84880298 MsG0880047338.01.T01:CDS
ATTCACATTATGTGCTCGTA+TGG 0.527756 8:+84882885 MsG0880047338.01.T01:CDS
GAACAACATCGGTAATCCTA+TGG 0.528082 8:-84880647 None:intergenic
TGTTGCTGACATACCTCGGC+AGG 0.528653 8:-84880672 None:intergenic
AAATTGTTCTGCTACTCTCA+AGG 0.532831 8:+84880620 MsG0880047338.01.T01:CDS
CAATTAAAGGATAGCATGCT+GGG 0.536280 8:+84884023 MsG0880047338.01.T01:three_prime_UTR
TGTTTGGGTGTAGGGTGCTG+AGG 0.545968 8:+84883013 MsG0880047338.01.T01:intron
GGAGTCGTGGAAGCTCAATC+CGG 0.546963 8:-84880245 None:intergenic
CTACTCTCAAGGGGAACCAT+AGG 0.552146 8:+84880631 MsG0880047338.01.T01:CDS
TATTCGGATGGTCTCCGACA+TGG 0.552839 8:+84880273 MsG0880047338.01.T01:CDS
CGATGTTGTTCTTCCTGCCG+AGG 0.557356 8:+84880659 MsG0880047338.01.T01:CDS
AGTCAGTGAAGTAAGGATCA+AGG 0.557755 8:+84881875 MsG0880047338.01.T01:CDS
ATAACTTTGGCTGCAATGGT+GGG 0.558078 8:+84882529 MsG0880047338.01.T01:CDS
CATTTAGGCCACAACAGGAT+AGG 0.558859 8:-84883743 None:intergenic
GTGGAAGCTCAATCCGGCGG+CGG 0.560054 8:-84880239 None:intergenic
TCCGAATAGGATTGGAGTCG+TGG 0.561061 8:-84880258 None:intergenic
GACCGCAAACTATCAAGTAA+TGG 0.561893 8:-84884247 None:intergenic
AACTCATGGGGAGGTGAATG+GGG 0.564340 8:+84883399 MsG0880047338.01.T01:CDS
ATTGTATGCAGAAAGATTGG+AGG 0.565149 8:+84881841 MsG0880047338.01.T01:intron
TTGAGAGTGAAAGATGGCAC+AGG 0.577311 8:+84880182 None:intergenic
ATGTATTCAAAGGCTTGGGA+TGG 0.579188 8:-84882555 None:intergenic
TAATGGAGAAAGTCTTACAT+AGG 0.581669 8:-84884230 None:intergenic
TCTACGCTTCATTTCATCAA+CGG 0.582909 8:-84880382 None:intergenic
AAGAGAGATATTCTTTCCGA+AGG 0.583318 8:-84882469 None:intergenic
CGTTAGTGTGGCATTTGAGG+TGG 0.585108 8:+84883070 MsG0880047338.01.T01:CDS
CAATGGTGGCCTTGAGACAG+AGG 0.588490 8:+84882584 MsG0880047338.01.T01:CDS
CTGTTGTGGCCTAAATGGTA+CGG 0.589550 8:+84883749 MsG0880047338.01.T01:exon
TTTGAATACATTAAATACAA+TGG 0.591214 8:+84882567 MsG0880047338.01.T01:CDS
TTTGGAGTCAGCTTACGCAC+AGG 0.591422 8:+84882446 MsG0880047338.01.T01:CDS
GATATGCTTCCTCTGTCTCA+AGG 0.591795 8:-84882593 None:intergenic
GTTGGGTATGGAATTGAAGA+TGG 0.599047 8:+84883354 MsG0880047338.01.T01:CDS
GAATACATTAAATACAATGG+TGG 0.602840 8:+84882570 MsG0880047338.01.T01:CDS
GAGGAAGCATATCCCTACAC+TGG 0.603850 8:+84882603 MsG0880047338.01.T01:CDS
GGAAGGATGTGATGCCCGAA+AGG 0.609217 8:+84883770 MsG0880047338.01.T01:three_prime_UTR
CATGCAAGGTGGAATTCACA+GGG 0.609406 8:-84883797 None:intergenic
AACTTGTGGCAACACACCCA+TGG 0.613991 8:+84883136 MsG0880047338.01.T01:CDS
GGAGGTGAATGGGGTGACCA+TGG 0.614058 8:+84883408 MsG0880047338.01.T01:CDS
CGACTCCAATCCTATTCGGA+TGG 0.614891 8:+84880261 MsG0880047338.01.T01:CDS
ATTGTTCTGCTACTCTCAAG+GGG 0.626423 8:+84880622 MsG0880047338.01.T01:CDS
TGGCTCTGTCAATATCACCT+TGG 0.626940 8:+84882677 MsG0880047338.01.T01:CDS
GCTACTTCAAAATGGAAATG+GGG 0.626994 8:+84883430 MsG0880047338.01.T01:CDS
GTCGTGGAAGCTCAATCCGG+CGG 0.638778 8:-84880242 None:intergenic
GTTTACACTAGTACAACTTG+TGG 0.641036 8:+84883122 MsG0880047338.01.T01:CDS
CTTTAATTGCTACATATCAG+GGG 0.642364 8:-84884009 None:intergenic
GAGTTCAGAAGTCATAGACT+TGG 0.649401 8:+84880588 MsG0880047338.01.T01:CDS
ACTACAAAGCATAACATGCA+AGG 0.650497 8:-84883811 None:intergenic
AGCGAGCGAAAGAGACAGCG+TGG 0.659831 8:-84880329 None:intergenic
TGAGAGTGAAAGATGGCACA+GGG 0.660266 8:+84880183 None:intergenic
AGGTGATATTGACAGAGCCA+AGG 0.667399 8:-84882674 None:intergenic
ACAAAGCATAACATGCAAGG+TGG 0.695267 8:-84883808 None:intergenic
TGTGGCCTAAATGGTACGGA+AGG 0.699515 8:+84883753 MsG0880047338.01.T01:exon
CTCGGCAGGAAGAACAACAT+CGG 0.700091 8:-84880658 None:intergenic
ATGTCCAGCATGATCCGCAG+TGG 0.707970 8:-84881898 None:intergenic
GAAATGGGGAAGAATATGTG+CGG 0.730027 8:+84883444 MsG0880047338.01.T01:CDS
ATGCAAGGTGGAATTCACAG+GGG 0.795651 8:-84883796 None:intergenic
AGTAAGGATCAAGGCCACTG+CGG 0.801299 8:+84881884 MsG0880047338.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAATTGTTTATTCAAA+CGG + Chr8:84881559-84881578 MsG0880047338.01.T01:intron 10.0%
!! ATAAAAATTAATAGATATCT+TGG + Chr8:84880911-84880930 MsG0880047338.01.T01:intron 10.0%
!!! ATTTTGTTTTTAATTTTGTT+TGG + Chr8:84882997-84883016 MsG0880047338.01.T01:intron 10.0%
!!! TTTAATTTAACAAATAGTTT+AGG + Chr8:84883239-84883258 MsG0880047338.01.T01:intron 10.0%
!!! TTTTGTTTTTAATTTTGTTT+GGG + Chr8:84882998-84883017 MsG0880047338.01.T01:intron 10.0%
!! AAAAAGAAAATTAAAGTCAA+AGG - Chr8:84880502-84880521 None:intergenic 15.0%
!! ATTGTATTTAATGTATTCAA+AGG - Chr8:84882568-84882587 None:intergenic 15.0%
!! TTTGAATACATTAAATACAA+TGG + Chr8:84882567-84882586 MsG0880047338.01.T01:CDS 15.0%
!!! AAATGCATTTTAAATTGTAA+TGG - Chr8:84881054-84881073 None:intergenic 15.0%
!!! AAATTTTAAAGTATGAGTTT+TGG + Chr8:84881977-84881996 MsG0880047338.01.T01:intron 15.0%
!!! AATCATTTTTGTTTAATTTC+AGG + Chr8:84883703-84883722 MsG0880047338.01.T01:intron 15.0%
!!! AATTTTGATGATAATGATTT+TGG + Chr8:84880534-84880553 MsG0880047338.01.T01:intron 15.0%
!!! GCTATATTAATTTTTTTTTG+AGG - Chr8:84880861-84880880 None:intergenic 15.0%
!! AATAGCTTATAGTAGTTATA+TGG + Chr8:84881478-84881497 MsG0880047338.01.T01:intron 20.0%
!! AATCAAAAATATGATTACCA+AGG - Chr8:84882697-84882716 None:intergenic 20.0%
!! ATTCTTCTGTAAAATAAGTT+TGG + Chr8:84883883-84883902 MsG0880047338.01.T01:three_prime_UTR 20.0%
!! CTGAGTTTATATTATTTAGT+TGG + Chr8:84882804-84882823 MsG0880047338.01.T01:intron 20.0%
!! TATATGATGAATAGAAGAAA+TGG - Chr8:84883919-84883938 None:intergenic 20.0%
!! TTCAAATAAATTAGGACTTA+GGG - Chr8:84882305-84882324 None:intergenic 20.0%
!!! AATTGTGCGTTTTTTTTATT+AGG + Chr8:84881244-84881263 MsG0880047338.01.T01:intron 20.0%
!!! ATTGCTAATTTTAATTTCGA+TGG + Chr8:84881162-84881181 MsG0880047338.01.T01:intron 20.0%
!!! ATTGTGCGTTTTTTTTATTA+GGG + Chr8:84881245-84881264 MsG0880047338.01.T01:intron 20.0%
!!! CTGTTATTCATTTTCTTATT+GGG + Chr8:84881655-84881674 MsG0880047338.01.T01:intron 20.0%
!!! TAAGTTATTTCTATAACTGA+AGG - Chr8:84881525-84881544 None:intergenic 20.0%
!!! TACAATCTTATTTTGTAATG+TGG - Chr8:84883942-84883961 None:intergenic 20.0%
! AATAAGTAAATTGCATTCTG+AGG + Chr8:84881791-84881810 MsG0880047338.01.T01:intron 25.0%
! ACACAGAGACATTATTTATT+TGG + Chr8:84883979-84883998 MsG0880047338.01.T01:three_prime_UTR 25.0%
! ACTATGTTAATTTCTTGTGT+TGG + Chr8:84882770-84882789 MsG0880047338.01.T01:intron 25.0%
! ATATGATTGCACAAAAAAGT+TGG - Chr8:84882048-84882067 None:intergenic 25.0%
! ATTCAAATTTCGTTAACTTC+TGG - Chr8:84883299-84883318 None:intergenic 25.0%
! ATTTAATGTATTCAAAGGCT+TGG - Chr8:84882563-84882582 None:intergenic 25.0%
! CAAAAATGATTAGCAAAAAC+AGG - Chr8:84883694-84883713 None:intergenic 25.0%
! CCAATAAGAAAATGAATAAC+AGG - Chr8:84881657-84881676 None:intergenic 25.0%
! GAAATTAATGCTAACATACA+CGG - Chr8:84881689-84881708 None:intergenic 25.0%
! GAATACATTAAATACAATGG+TGG + Chr8:84882570-84882589 MsG0880047338.01.T01:CDS 25.0%
! GTTCAAATAAATTAGGACTT+AGG - Chr8:84882306-84882325 None:intergenic 25.0%
! TAACGAAATTTGAATTTGTC+TGG + Chr8:84883304-84883323 MsG0880047338.01.T01:intron 25.0%
! TAGTTAACAAATACATCATG+CGG - Chr8:84882729-84882748 None:intergenic 25.0%
! TCAAATAAATTAGGACTTAG+GGG - Chr8:84882304-84882323 None:intergenic 25.0%
! TCACAAACAAATATGAACAA+CGG - Chr8:84881772-84881791 None:intergenic 25.0%
! TTAACAAAAGAGTTAAGATC+CGG - Chr8:84883478-84883497 None:intergenic 25.0%
! TTCAAATTTCGTTAACTTCT+GGG - Chr8:84883298-84883317 None:intergenic 25.0%
! TTCCATTCCATTAAAATTAG+TGG - Chr8:84882224-84882243 None:intergenic 25.0%
! TTCTACATTCATAGATAACT+CGG - Chr8:84881077-84881096 None:intergenic 25.0%
! TTGAATTAAACACTAGATTG+AGG - Chr8:84883192-84883211 None:intergenic 25.0%
! TTTAATGTATTCAAAGGCTT+GGG - Chr8:84882562-84882581 None:intergenic 25.0%
! TTTCTAAACGCAATACTTTA+TGG + Chr8:84882170-84882189 MsG0880047338.01.T01:intron 25.0%
!! AAACTGTCCACTAATTTTAA+TGG + Chr8:84882214-84882233 MsG0880047338.01.T01:intron 25.0%
!! AATATAGCACTCAAAGTATT+AGG + Chr8:84880873-84880892 MsG0880047338.01.T01:intron 25.0%
!! CCTGTTATTCATTTTCTTAT+TGG + Chr8:84881654-84881673 MsG0880047338.01.T01:intron 25.0%
!! CTACTATAAGCTATTTCATA+AGG - Chr8:84881473-84881492 None:intergenic 25.0%
!! GTAACTGAGACTTTTATATT+TGG - Chr8:84881015-84881034 None:intergenic 25.0%
!! TAATCATTTAATCTGAAGTG+CGG - Chr8:84881608-84881627 None:intergenic 25.0%
!! TCTTGATGATTAAATAACTG+TGG + Chr8:84883533-84883552 MsG0880047338.01.T01:intron 25.0%
!! TTTTCAGATGTAAATTTGCA+GGG - Chr8:84882639-84882658 None:intergenic 25.0%
!!! AATAGTTTAGGTTGAATCTA+TGG + Chr8:84883251-84883270 MsG0880047338.01.T01:intron 25.0%
!!! TTGTGCGTTTTTTTTATTAG+GGG + Chr8:84881246-84881265 MsG0880047338.01.T01:intron 25.0%
!!! TTTAATTTTGTTTGGGTGTA+GGG + Chr8:84883005-84883024 MsG0880047338.01.T01:intron 25.0%
!!! TTTTAATTTTGTTTGGGTGT+AGG + Chr8:84883004-84883023 MsG0880047338.01.T01:intron 25.0%
AAAGTGCAACTTCATACAAA+GGG - Chr8:84882380-84882399 None:intergenic 30.0%
AAATTCAGTTGAAGAATGAC+AGG - Chr8:84881711-84881730 None:intergenic 30.0%
AACTATAGCATAGACACTTA+TGG - Chr8:84881374-84881393 None:intergenic 30.0%
AATTAAACACTAGATTGAGG+AGG - Chr8:84883189-84883208 None:intergenic 30.0%
AGACGACATTAACTACAAAA+AGG - Chr8:84882139-84882158 None:intergenic 30.0%
ATCTAATATAGATGAAGTCG+AGG - Chr8:84882971-84882990 None:intergenic 30.0%
ATCTACTAATAAGAAACGTC+TGG + Chr8:84880440-84880459 MsG0880047338.01.T01:CDS 30.0%
ATGATTAAATAACTGTGGCA+AGG + Chr8:84883538-84883557 MsG0880047338.01.T01:intron 30.0%
CAGTTACATACACAAATACT+AGG + Chr8:84881028-84881047 MsG0880047338.01.T01:intron 30.0%
CCTTTAATTGCTACATATCA+GGG - Chr8:84884013-84884032 None:intergenic 30.0%
CTTTAATTGCTACATATCAG+GGG - Chr8:84884012-84884031 None:intergenic 30.0%
GACTTCAGATTATACAAGAA+AGG + Chr8:84883098-84883117 MsG0880047338.01.T01:CDS 30.0%
GCACTTGGTTCAAATAAATT+AGG - Chr8:84882313-84882332 None:intergenic 30.0%
GTGACAGTCTAATATTATTG+TGG - Chr8:84881743-84881762 None:intergenic 30.0%
GTTATTGTATGCAGAAAGAT+TGG + Chr8:84881838-84881857 MsG0880047338.01.T01:intron 30.0%
TAAAGTGCAACTTCATACAA+AGG - Chr8:84882381-84882400 None:intergenic 30.0%
TAACAAAAGAGTTAAGATCC+GGG - Chr8:84883477-84883496 None:intergenic 30.0%
TAATGGAGAAAGTCTTACAT+AGG - Chr8:84884233-84884252 None:intergenic 30.0%
TCAAATTTCGTTAACTTCTG+GGG - Chr8:84883297-84883316 None:intergenic 30.0%
TCCTACATAACACAATCTAA+AGG - Chr8:84883564-84883583 None:intergenic 30.0%
TCCTTTAATTGCTACATATC+AGG - Chr8:84884014-84884033 None:intergenic 30.0%
TGAAAATAACACTCGTGTAA+TGG - Chr8:84881195-84881214 None:intergenic 30.0%
TTCAAATTCACACAAATGCT+CGG - Chr8:84880992-84881011 None:intergenic 30.0%
TTGGCTCATTAAAAACTCAT+GGG + Chr8:84883386-84883405 MsG0880047338.01.T01:CDS 30.0%
TTTGCGTCTTTGTGAAAATA+TGG + Chr8:84883607-84883626 MsG0880047338.01.T01:intron 30.0%
! AAAGTTGGCTTATAAACCAA+AGG - Chr8:84882033-84882052 None:intergenic 30.0%
! AAGGCATTAATTTGAGAAAG+TGG - Chr8:84882347-84882366 None:intergenic 30.0%
! ACTAAAGACATGCTTGTTAA+TGG - Chr8:84881134-84881153 None:intergenic 30.0%
! ATATTTTCACAAAGACGCAA+AGG - Chr8:84883608-84883627 None:intergenic 30.0%
! ATGCTATTAGGATGCTATTT+AGG - Chr8:84881585-84881604 None:intergenic 30.0%
! ATTCATTTTCTTATTGGGTC+TGG + Chr8:84881660-84881679 MsG0880047338.01.T01:intron 30.0%
! ATTGGCTCATTAAAAACTCA+TGG + Chr8:84883385-84883404 MsG0880047338.01.T01:CDS 30.0%
! GAGTTTTTAATGAGCCAATA+TGG - Chr8:84883384-84883403 None:intergenic 30.0%
! GTTTTCAGATGTAAATTTGC+AGG - Chr8:84882640-84882659 None:intergenic 30.0%
!! GTCCACTAATTTTAATGGAA+TGG + Chr8:84882219-84882238 MsG0880047338.01.T01:intron 30.0%
!!! ATTAGGGGCTTATTTTTACT+AGG + Chr8:84881261-84881280 MsG0880047338.01.T01:intron 30.0%
!!! ATTTTTTTTTGAGGCTCCTA+AGG - Chr8:84880852-84880871 None:intergenic 30.0%
AAATTGTTCTGCTACTCTCA+AGG + Chr8:84880620-84880639 MsG0880047338.01.T01:CDS 35.0%
AAGAGAGATATTCTTTCCGA+AGG - Chr8:84882472-84882491 None:intergenic 35.0%
AAGGTATAGTCAGTGAAGTA+AGG + Chr8:84881868-84881887 MsG0880047338.01.T01:CDS 35.0%
AATTGTTCTGCTACTCTCAA+GGG + Chr8:84880621-84880640 MsG0880047338.01.T01:CDS 35.0%
ACTACAAAGCATAACATGCA+AGG - Chr8:84883814-84883833 None:intergenic 35.0%
ATAGAATGCACTTGAGTCAT+CGG + Chr8:84880951-84880970 MsG0880047338.01.T01:intron 35.0%
ATCAAGATCCAAGACAGAAA+AGG - Chr8:84883520-84883539 None:intergenic 35.0%
ATTCACATTATGTGCTCGTA+TGG + Chr8:84882885-84882904 MsG0880047338.01.T01:CDS 35.0%
ATTGTATGCAGAAAGATTGG+AGG + Chr8:84881841-84881860 MsG0880047338.01.T01:intron 35.0%
CAAGACAGAAAAGGACAATT+GGG - Chr8:84883511-84883530 None:intergenic 35.0%
CAATTAAAGGATAGCATGCT+GGG + Chr8:84884023-84884042 MsG0880047338.01.T01:three_prime_UTR 35.0%
CACTTAAGTAGTAATCAAGC+AGG + Chr8:84880778-84880797 MsG0880047338.01.T01:intron 35.0%
CCCTGATATGTAGCAATTAA+AGG + Chr8:84884010-84884029 MsG0880047338.01.T01:three_prime_UTR 35.0%
GAAATTTGAATTTGTCTGGC+AGG + Chr8:84883308-84883327 MsG0880047338.01.T01:intron 35.0%
GCCTTTAGATTGTGTTATGT+AGG + Chr8:84883560-84883579 MsG0880047338.01.T01:intron 35.0%
GCTACTTCAAAATGGAAATG+GGG + Chr8:84883430-84883449 MsG0880047338.01.T01:CDS 35.0%
GGCTACTTCAAAATGGAAAT+GGG + Chr8:84883429-84883448 MsG0880047338.01.T01:CDS 35.0%
GGCTTATAAACCAAAGGATA+GGG - Chr8:84882027-84882046 None:intergenic 35.0%
GTTTACACTAGTACAACTTG+TGG + Chr8:84883122-84883141 MsG0880047338.01.T01:CDS 35.0%
TACAAAGGGTTGAATCTCAA+AGG - Chr8:84882366-84882385 None:intergenic 35.0%
TAGGCACAGACAAATGAAAA+TGG + Chr8:84884080-84884099 MsG0880047338.01.T01:three_prime_UTR 35.0%
TATAGCATAGACACTTATGG+TGG - Chr8:84881371-84881390 None:intergenic 35.0%
TCAAATTCACACAAATGCTC+GGG - Chr8:84880991-84881010 None:intergenic 35.0%
TCTACGCTTCATTTCATCAA+CGG - Chr8:84880385-84880404 None:intergenic 35.0%
TGGCTACTTCAAAATGGAAA+TGG + Chr8:84883428-84883447 MsG0880047338.01.T01:CDS 35.0%
TGGCTCATTAAAAACTCATG+GGG + Chr8:84883387-84883406 MsG0880047338.01.T01:CDS 35.0%
TGGCTTATAAACCAAAGGAT+AGG - Chr8:84882028-84882047 None:intergenic 35.0%
TGTCGTATTATGAGCTAGTT+TGG + Chr8:84880723-84880742 MsG0880047338.01.T01:intron 35.0%
TTCAATAACTTTGGCTGCAA+TGG + Chr8:84882525-84882544 MsG0880047338.01.T01:CDS 35.0%
TTGAAGATGGTGTACCATAT+TGG + Chr8:84883367-84883386 MsG0880047338.01.T01:CDS 35.0%
! CAGTGTCATTGTTACAGATA+TGG - Chr8:84882404-84882423 None:intergenic 35.0%
! CTCCATTACTTGATAGTTTG+CGG + Chr8:84884245-84884264 MsG0880047338.01.T01:three_prime_UTR 35.0%
! TGAGAGTTTTGCAAGAACTT+AGG + Chr8:84881396-84881415 MsG0880047338.01.T01:intron 35.0%
!! AATGAGCATTGTGCTCTTTT+TGG - Chr8:84882842-84882861 None:intergenic 35.0%
!! AGATTTTGCTGATTGGACTT+GGG + Chr8:84880563-84880582 MsG0880047338.01.T01:intron 35.0%
!!! ACTTAAGTGTTGTTTTCGTC+AGG - Chr8:84880767-84880786 None:intergenic 35.0%
!!! TTTCCATTTTGAAGTAGCCA+TGG - Chr8:84883428-84883447 None:intergenic 35.0%
AATAACTTTGGCTGCAATGG+TGG + Chr8:84882528-84882547 MsG0880047338.01.T01:CDS 40.0%
ACAAAGCATAACATGCAAGG+TGG - Chr8:84883811-84883830 None:intergenic 40.0%
ACTTGGAGAATGTCTGTCTT+AGG + Chr8:84884061-84884080 MsG0880047338.01.T01:three_prime_UTR 40.0%
AGGGTTTCAAGAGGTTAAGA+TGG - Chr8:84882008-84882027 None:intergenic 40.0%
AGTCAGTGAAGTAAGGATCA+AGG + Chr8:84881875-84881894 MsG0880047338.01.T01:CDS 40.0%
ATAACTTTGGCTGCAATGGT+GGG + Chr8:84882529-84882548 MsG0880047338.01.T01:CDS 40.0%
ATGTATTCAAAGGCTTGGGA+TGG - Chr8:84882558-84882577 None:intergenic 40.0%
ATTGTTCTGCTACTCTCAAG+GGG + Chr8:84880622-84880641 MsG0880047338.01.T01:CDS 40.0%
CACCAACACACTTGATTACA+TGG - Chr8:84881317-84881336 None:intergenic 40.0%
CAGAAAGATTGGAGGAAAGA+AGG + Chr8:84881849-84881868 MsG0880047338.01.T01:intron 40.0%
CCAAGACAGAAAAGGACAAT+TGG - Chr8:84883512-84883531 None:intergenic 40.0%
CTCATTAAAAACTCATGGGG+AGG + Chr8:84883390-84883409 MsG0880047338.01.T01:CDS 40.0%
GAAATGGGGAAGAATATGTG+CGG + Chr8:84883444-84883463 MsG0880047338.01.T01:CDS 40.0%
GAACAACATCGGTAATCCTA+TGG - Chr8:84880650-84880669 None:intergenic 40.0%
GACCGCAAACTATCAAGTAA+TGG - Chr8:84884250-84884269 None:intergenic 40.0%
GAGTTCAGAAGTCATAGACT+TGG + Chr8:84880588-84880607 MsG0880047338.01.T01:CDS 40.0%
GCAATTAAAGGATAGCATGC+TGG + Chr8:84884022-84884041 MsG0880047338.01.T01:three_prime_UTR 40.0%
GCTGGTGCTTTCAATAACTT+TGG + Chr8:84882516-84882535 MsG0880047338.01.T01:CDS 40.0%
GGTGTGTGTTTCTCATTACT+TGG + Chr8:84884044-84884063 MsG0880047338.01.T01:three_prime_UTR 40.0%
GTTGGGTATGGAATTGAAGA+TGG + Chr8:84883354-84883373 MsG0880047338.01.T01:CDS 40.0%
TATCCCTACACTGGACAAAA+TGG + Chr8:84882612-84882631 MsG0880047338.01.T01:CDS 40.0%
TATTGCAGAACACTCACCAT+GGG - Chr8:84883155-84883174 None:intergenic 40.0%
TGACCATGGCTACTTCAAAA+TGG + Chr8:84883422-84883441 MsG0880047338.01.T01:CDS 40.0%
TTGTTCATCCTATCCTGTTG+TGG + Chr8:84883735-84883754 MsG0880047338.01.T01:CDS 40.0%
! AACTAACAACAGCTCTAGCA+AGG - Chr8:84883633-84883652 None:intergenic 40.0%
! AATCATGCTGTTCTTGCTGT+TGG + Chr8:84883336-84883355 MsG0880047338.01.T01:CDS 40.0%
! CCAATTGTCCTTTTCTGTCT+TGG + Chr8:84883509-84883528 MsG0880047338.01.T01:intron 40.0%
! GAGTTGCAGATTTTGCTGAT+TGG + Chr8:84880556-84880575 MsG0880047338.01.T01:intron 40.0%
! GTGGTGAACATTTTTGCACT+TGG - Chr8:84882328-84882347 None:intergenic 40.0%
! TCTTATCGTTTTCTTCTGCG+TGG + Chr8:84880210-84880229 MsG0880047338.01.T01:CDS 40.0%
!! ATCATGCTGTTCTTGCTGTT+GGG + Chr8:84883337-84883356 MsG0880047338.01.T01:CDS 40.0%
!! CAGATTTTGCTGATTGGACT+TGG + Chr8:84880562-84880581 MsG0880047338.01.T01:intron 40.0%
!!! AAGAAGCTGCTTTTCCATGT+CGG - Chr8:84880290-84880309 None:intergenic 40.0%
AAAACTCATGGGGAGGTGAA+TGG + Chr8:84883397-84883416 MsG0880047338.01.T01:CDS 45.0%
AAACTCATGGGGAGGTGAAT+GGG + Chr8:84883398-84883417 MsG0880047338.01.T01:CDS 45.0%
AAGCAGCTTCTTCAGGTCAT+CGG + Chr8:84880298-84880317 MsG0880047338.01.T01:CDS 45.0%
AAGTAGTAATCAAGCAGGCC+CGG + Chr8:84880783-84880802 MsG0880047338.01.T01:intron 45.0%
AATATGTGCGGTAAGGATCC+CGG + Chr8:84883456-84883475 MsG0880047338.01.T01:intron 45.0%
AATTCACAGGGGTAGCCTTT+CGG - Chr8:84883788-84883807 None:intergenic 45.0%
ACATGCAAGGTGGAATTCAC+AGG - Chr8:84883801-84883820 None:intergenic 45.0%
ACCTCAAATGCCACACTAAC+GGG - Chr8:84883071-84883090 None:intergenic 45.0%
AGGTGATATTGACAGAGCCA+AGG - Chr8:84882677-84882696 None:intergenic 45.0%
ATGCAAGGTGGAATTCACAG+GGG - Chr8:84883799-84883818 None:intergenic 45.0%
CACATCCTTCCGTACCATTT+AGG - Chr8:84883761-84883780 None:intergenic 45.0%
CACCTCAAATGCCACACTAA+CGG - Chr8:84883072-84883091 None:intergenic 45.0%
CAGAAAAGGACAATTGGGTG+AGG - Chr8:84883506-84883525 None:intergenic 45.0%
CAGTTGTTGCTGACATACCT+CGG - Chr8:84880679-84880698 None:intergenic 45.0%
CATGCAAGGTGGAATTCACA+GGG - Chr8:84883800-84883819 None:intergenic 45.0%
CATGGAAAAGCAGCTTCTTC+AGG + Chr8:84880291-84880310 MsG0880047338.01.T01:CDS 45.0%
CATTTAGGCCACAACAGGAT+AGG - Chr8:84883746-84883765 None:intergenic 45.0%
CCAAAGGATAGGGTTTCAAG+AGG - Chr8:84882017-84882036 None:intergenic 45.0%
CCTCTTGAAACCCTATCCTT+TGG + Chr8:84882014-84882033 MsG0880047338.01.T01:intron 45.0%
CTATCCTGTTGTGGCCTAAA+TGG + Chr8:84883744-84883763 MsG0880047338.01.T01:exon 45.0%
CTATTGCAGAACACTCACCA+TGG - Chr8:84883156-84883175 None:intergenic 45.0%
CTGTTGTGGCCTAAATGGTA+CGG + Chr8:84883749-84883768 MsG0880047338.01.T01:exon 45.0%
GATATGCTTCCTCTGTCTCA+AGG - Chr8:84882596-84882615 None:intergenic 45.0%
GCTCGCTTTGCTAACAGATA+CGG + Chr8:84880345-84880364 MsG0880047338.01.T01:CDS 45.0%
GGCCATGTAATCAAGTGTGT+TGG + Chr8:84881312-84881331 MsG0880047338.01.T01:intron 45.0%
GTAGTTGCTCTGTAGAGACA+TGG + Chr8:84882926-84882945 MsG0880047338.01.T01:intron 45.0%
GTCTCTACAGAGCAACTACA+AGG - Chr8:84882925-84882944 None:intergenic 45.0%
TCCACGACTCCAATCCTATT+CGG + Chr8:84880257-84880276 MsG0880047338.01.T01:CDS 45.0%
TCCCTATAAAACTGGAGGCT+CGG - Chr8:84881291-84881310 None:intergenic 45.0%
! AACGTTGCTGTTCAAGTCCT+TGG + Chr8:84882657-84882676 MsG0880047338.01.T01:CDS 45.0%
! CTGACTGTGAGGAGCTATTT+TGG + Chr8:84881932-84881951 MsG0880047338.01.T01:intron 45.0%
! GCATAGACACTTATGGTGGA+AGG - Chr8:84881367-84881386 None:intergenic 45.0%
! GGACCATTTTGTCCAGTGTA+GGG - Chr8:84882618-84882637 None:intergenic 45.0%
! TCTGAAGTGCGGATGCTATT+AGG - Chr8:84881597-84881616 None:intergenic 45.0%
! TCTGGGGAAGCATATCATGA+TGG - Chr8:84883281-84883300 None:intergenic 45.0%
! TCTGGTGTCTAAAACCGAGA+TGG - Chr8:84881340-84881359 None:intergenic 45.0%
! TGGCTCTGTCAATATCACCT+TGG + Chr8:84882677-84882696 MsG0880047338.01.T01:CDS 45.0%
!! AGCCTCCAGTTTTATAGGGA+CGG + Chr8:84881291-84881310 MsG0880047338.01.T01:intron 45.0%
!! TTTTGCTGATTGGACTTGGG+AGG + Chr8:84880566-84880585 MsG0880047338.01.T01:CDS 45.0%
AACTCATGGGGAGGTGAATG+GGG + Chr8:84883399-84883418 MsG0880047338.01.T01:CDS 50.0%
AACTTGTGGCAACACACCCA+TGG + Chr8:84883136-84883155 MsG0880047338.01.T01:CDS 50.0%
ACCTTGCATATGCCAATGGC+CGG - Chr8:84880805-84880824 None:intergenic 50.0%
ACTGTCATCTGCAGCACAAC+TGG + Chr8:84882420-84882439 MsG0880047338.01.T01:CDS 50.0%
AGCAGCTTCTTCAGGTCATC+GGG + Chr8:84880299-84880318 MsG0880047338.01.T01:CDS 50.0%
AGTAAGGATCAAGGCCACTG+CGG + Chr8:84881884-84881903 MsG0880047338.01.T01:CDS 50.0%
ATGTCGGAGACCATCCGAAT+AGG - Chr8:84880274-84880293 None:intergenic 50.0%
ATTCACAGGGGTAGCCTTTC+GGG - Chr8:84883787-84883806 None:intergenic 50.0%
CACTTGAGTCATCGGTCTTG+AGG + Chr8:84880959-84880978 MsG0880047338.01.T01:intron 50.0%
CATGGCCGTCCCTATAAAAC+TGG - Chr8:84881299-84881318 None:intergenic 50.0%
CGACTCCAATCCTATTCGGA+TGG + Chr8:84880261-84880280 MsG0880047338.01.T01:CDS 50.0%
CGTACCATTTAGGCCACAAC+AGG - Chr8:84883751-84883770 None:intergenic 50.0%
CGTTAGTGTGGCATTTGAGG+TGG + Chr8:84883070-84883089 MsG0880047338.01.T01:CDS 50.0%
CTACTCTCAAGGGGAACCAT+AGG + Chr8:84880631-84880650 MsG0880047338.01.T01:CDS 50.0%
CTCGGCAGGAAGAACAACAT+CGG - Chr8:84880661-84880680 None:intergenic 50.0%
GCTCACCTTGCATATGCCAA+TGG - Chr8:84880809-84880828 None:intergenic 50.0%
GGAGACCATCCGAATAGGAT+TGG - Chr8:84880269-84880288 None:intergenic 50.0%
GGCATATGCAAGGTGAGCTA+TGG + Chr8:84880811-84880830 MsG0880047338.01.T01:intron 50.0%
GGGGAAGAATATGTGCGGTA+AGG + Chr8:84883449-84883468 MsG0880047338.01.T01:intron 50.0%
TATTCGGATGGTCTCCGACA+TGG + Chr8:84880273-84880292 MsG0880047338.01.T01:CDS 50.0%
TCCCGTTAGTGTGGCATTTG+AGG + Chr8:84883067-84883086 MsG0880047338.01.T01:CDS 50.0%
TCCGAATAGGATTGGAGTCG+TGG - Chr8:84880261-84880280 None:intergenic 50.0%
TCTTTCTGAGCAGCAGCTAG+TGG + Chr8:84882488-84882507 MsG0880047338.01.T01:CDS 50.0%
TGTGGCCTAAATGGTACGGA+AGG + Chr8:84883753-84883772 MsG0880047338.01.T01:exon 50.0%
! CTTATGGTGGAAGGTGTGTC+TGG - Chr8:84881358-84881377 None:intergenic 50.0%
! GAGGAAGCATATCCCTACAC+TGG + Chr8:84882603-84882622 MsG0880047338.01.T01:CDS 50.0%
! GGGACCATTTTGTCCAGTGT+AGG - Chr8:84882619-84882638 None:intergenic 50.0%
! TCAGGTTGCTTCTGACTGTG+AGG + Chr8:84881921-84881940 MsG0880047338.01.T01:intron 50.0%
! TTTGGAGTCAGCTTACGCAC+AGG + Chr8:84882446-84882465 MsG0880047338.01.T01:CDS 50.0%
! TTTTGCTCGTCCCGTTAGTG+TGG + Chr8:84883058-84883077 MsG0880047338.01.T01:CDS 50.0%
!! AGCCGAGCCTCCAGTTTTAT+AGG + Chr8:84881286-84881305 MsG0880047338.01.T01:intron 50.0%
!! CAAGTGTGTTGGTGCCATCT+CGG + Chr8:84881323-84881342 MsG0880047338.01.T01:intron 50.0%
!! GCCGAGCCTCCAGTTTTATA+GGG + Chr8:84881287-84881306 MsG0880047338.01.T01:intron 50.0%
!! GCTGTTCTTGCTGTTGGGTA+TGG + Chr8:84883342-84883361 MsG0880047338.01.T01:CDS 50.0%
ATGTCCAGCATGATCCGCAG+TGG - Chr8:84881901-84881920 None:intergenic 55.0%
CCTTGCATATGCCAATGGCC+GGG - Chr8:84880804-84880823 None:intergenic 55.0%
CGATGTTGTTCTTCCTGCCG+AGG + Chr8:84880659-84880678 MsG0880047338.01.T01:CDS 55.0%
CTGCAGCACAACTGGAGCTT+TGG + Chr8:84882428-84882447 MsG0880047338.01.T01:CDS 55.0%
GCGGATCATGCTGGACATTC+AGG + Chr8:84881903-84881922 MsG0880047338.01.T01:CDS 55.0%
GGAAGGATGTGATGCCCGAA+AGG + Chr8:84883770-84883789 MsG0880047338.01.T01:three_prime_UTR 55.0%
GGAGTCGTGGAAGCTCAATC+CGG - Chr8:84880248-84880267 None:intergenic 55.0%
GGCCGTCCCTATAAAACTGG+AGG - Chr8:84881296-84881315 None:intergenic 55.0%
TCAGCTTACGCACAGGCCTT+CGG + Chr8:84882453-84882472 MsG0880047338.01.T01:CDS 55.0%
TGCAAGGTGAGCTATGGTGC+CGG + Chr8:84880817-84880836 MsG0880047338.01.T01:intron 55.0%
TGTTGCTGACATACCTCGGC+AGG - Chr8:84880675-84880694 None:intergenic 55.0%
! CAATGGTGGCCTTGAGACAG+AGG + Chr8:84882584-84882603 MsG0880047338.01.T01:CDS 55.0%
!! TGTTTGGGTGTAGGGTGCTG+AGG + Chr8:84883013-84883032 MsG0880047338.01.T01:intron 55.0%
AAGGCCACTGCGGATCATGC+TGG + Chr8:84881894-84881913 MsG0880047338.01.T01:CDS 60.0%
AATCAAGCAGGCCCGGCCAT+TGG + Chr8:84880790-84880809 MsG0880047338.01.T01:intron 60.0%
AGCGAGCGAAAGAGACAGCG+TGG - Chr8:84880332-84880351 None:intergenic 60.0%
CCCGGCCATTGGCATATGCA+AGG + Chr8:84880801-84880820 MsG0880047338.01.T01:intron 60.0%
GCAAGGTGAGCTATGGTGCC+GGG + Chr8:84880818-84880837 MsG0880047338.01.T01:intron 60.0%
GGAGGTGAATGGGGTGACCA+TGG + Chr8:84883408-84883427 MsG0880047338.01.T01:CDS 60.0%
GTCGTGGAAGCTCAATCCGG+CGG - Chr8:84880245-84880264 None:intergenic 60.0%
TTGAGGCTCCTAAGGCTGCG+AGG - Chr8:84880844-84880863 None:intergenic 60.0%
!! CAGCAGCTAGTGGACTGTGC+TGG + Chr8:84882498-84882517 MsG0880047338.01.T01:CDS 60.0%
GTGGAAGCTCAATCCGGCGG+CGG - Chr8:84880242-84880261 None:intergenic 65.0%
GAAGCTCAATCCGGCGGCGG+CGG - Chr8:84880239-84880258 None:intergenic 70.0%
GCTCCTAAGGCTGCGAGGCC+CGG - Chr8:84880839-84880858 None:intergenic 70.0%
GTGCCGGGCCTCGCAGCCTT+AGG + Chr8:84880833-84880852 MsG0880047338.01.T01:intron 75.0%
! GCTCAATCCGGCGGCGGCGG+TGG - Chr8:84880236-84880255 None:intergenic 80.0%
! TGCGTGGCCACCGCCGCCGC+CGG + Chr8:84880226-84880245 MsG0880047338.01.T01:CDS 85.0%
Chromosome Type Strat End Strand Name
Chr8 gene 84880195 84884289 84880195 ID=MsG0880047338.01;Name=MsG0880047338.01
Chr8 mRNA 84880195 84884289 84880195 ID=MsG0880047338.01.T01;Parent=MsG0880047338.01;Name=MsG0880047338.01.T01;_AED=0.30;_eAED=0.40;_QI=0|0.42|0.62|1|1|1|8|527|391
Chr8 exon 84880195 84880477 84880195 ID=MsG0880047338.01.T01:exon:19505;Parent=MsG0880047338.01.T01
Chr8 exon 84880565 84880680 84880565 ID=MsG0880047338.01.T01:exon:19506;Parent=MsG0880047338.01.T01
Chr8 exon 84881852 84881924 84881852 ID=MsG0880047338.01.T01:exon:19507;Parent=MsG0880047338.01.T01
Chr8 exon 84882391 84882698 84882391 ID=MsG0880047338.01.T01:exon:19508;Parent=MsG0880047338.01.T01
Chr8 exon 84882823 84882912 84882823 ID=MsG0880047338.01.T01:exon:19509;Parent=MsG0880047338.01.T01
Chr8 exon 84883026 84883157 84883026 ID=MsG0880047338.01.T01:exon:19510;Parent=MsG0880047338.01.T01
Chr8 exon 84883330 84883465 84883330 ID=MsG0880047338.01.T01:exon:19511;Parent=MsG0880047338.01.T01
Chr8 exon 84883725 84884289 84883725 ID=MsG0880047338.01.T01:exon:19512;Parent=MsG0880047338.01.T01
Chr8 CDS 84880195 84880477 84880195 ID=MsG0880047338.01.T01:cds;Parent=MsG0880047338.01.T01
Chr8 CDS 84880565 84880680 84880565 ID=MsG0880047338.01.T01:cds;Parent=MsG0880047338.01.T01
Chr8 CDS 84881852 84881924 84881852 ID=MsG0880047338.01.T01:cds;Parent=MsG0880047338.01.T01
Chr8 CDS 84882391 84882698 84882391 ID=MsG0880047338.01.T01:cds;Parent=MsG0880047338.01.T01
Chr8 CDS 84882823 84882912 84882823 ID=MsG0880047338.01.T01:cds;Parent=MsG0880047338.01.T01
Chr8 CDS 84883026 84883157 84883026 ID=MsG0880047338.01.T01:cds;Parent=MsG0880047338.01.T01
Chr8 CDS 84883330 84883465 84883330 ID=MsG0880047338.01.T01:cds;Parent=MsG0880047338.01.T01
Chr8 CDS 84883725 84883762 84883725 ID=MsG0880047338.01.T01:cds;Parent=MsG0880047338.01.T01
Chr8 three_prime_UTR 84883763 84884289 84883763 ID=MsG0880047338.01.T01:three_prime_utr;Parent=MsG0880047338.01.T01
Gene Sequence

>MsG0880047338.01.T01

ATGGCACAGGGACGCTCTTATCGTTTTCTTCTGCGTGGCCACCGCCGCCGCCGGATTGAGCTTCCACGACTCCAATCCTATTCGGATGGTCTCCGACATGGAAAAGCAGCTTCTTCAGGTCATCGGGAATCTCGCCACGCTGTCTCTTTCGCTCGCTTTGCTAACAGATACGGCAAAAGATACGATACCGTTGATGAAATGAAGCGTAGATTTAAGATCTTCTCTGAGAATCTTCAACTTATCAAATCTACTAATAAGAAACGTCTGGTTACACTCTCAAATCATTTTGCTGATTGGACTTGGGAGGAGTTCAGAAGTCATAGACTTGGTGCTGCTCAAAATTGTTCTGCTACTCTCAAGGGGAACCATAGGATTACCGATGTTGTTCTTCCTGCCGAGAAAGATTGGAGGAAAGAAGGTATAGTCAGTGAAGTAAGGATCAAGGCCACTGCGGATCATGCTGGACATTCAGTTGCACTTTACCATATCTGTAACAATGACACTGTCATCTGCAGCACAACTGGAGCTTTGGAGTCAGCTTACGCACAGGCCTTCGGAAAGAATATCTCTCTTTCTGAGCAGCAGCTAGTGGACTGTGCTGGTGCTTTCAATAACTTTGGCTGCAATGGTGGGCTGCCATCCCAAGCCTTTGAATACATTAAATACAATGGTGGCCTTGAGACAGAGGAAGCATATCCCTACACTGGACAAAATGGTCCCTGCAAATTTACATCTGAAAACGTTGCTGTTCAAGTCCTTGGCTCTGTCAATATCACCTTGTTGGTTGAAAGCGATTCCAAAAAGAGCACAATGCTCATTTACAGATTCTCTCTGCTTTCTCTATTCACATTATGTGCTCGTATGGATATTGGTGCTGAGGATGAATTGAAACATGCAGTTGCTTTTGCTCGTCCCGTTAGTGTGGCATTTGAGGTGGTTGATGACTTCAGATTATACAAGAAAGGAGTTTACACTAGTACAACTTGTGGCAACACACCCATGGATGTGAATCATGCTGTTCTTGCTGTTGGGTATGGAATTGAAGATGGTGTACCATATTGGCTCATTAAAAACTCATGGGGAGGTGAATGGGGTGACCATGGCTACTTCAAAATGGAAATGGGGAAGAATATGTGCGGTGTTGCAACTTGTTCATCCTATCCTGTTGTGGCCTAA
Protein sequence

>MsG0880047338.01.T01

MAQGRSYRFLLRGHRRRRIELPRLQSYSDGLRHGKAASSGHRESRHAVSFARFANRYGKRYDTVDEMKRRFKIFSENLQLIKSTNKKRLVTLSNHFADWTWEEFRSHRLGAAQNCSATLKGNHRITDVVLPAEKDWRKEGIVSEVRIKATADHAGHSVALYHICNNDTVICSTTGALESAYAQAFGKNISLSEQQLVDCAGAFNNFGCNGGLPSQAFEYIKYNGGLETEEAYPYTGQNGPCKFTSENVAVQVLGSVNITLLVESDSKKSTMLIYRFSLLSLFTLCARMDIGAEDELKHAVAFARPVSVAFEVVDDFRLYKKGVYTSTTCGNTPMDVNHAVLAVGYGIEDGVPYWLIKNSWGGEWGDHGYFKMEMGKNMCGVATCSSYPVVA*