AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005142.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005142.01.T01 MTR_1g094135 97.113 381 11 0 1 381 1 381 0.0 781
MsG0180005142.01.T01 MTR_1g023210 52.151 372 168 4 1 370 1 364 1.77e-140 404
MsG0180005142.01.T01 MTR_4g071060 53.482 359 156 6 15 370 10 360 3.83e-140 403
MsG0180005142.01.T01 MTR_4g073660 43.288 365 162 7 8 370 6 327 5.13e-100 300
MsG0180005142.01.T01 MTR_4g072790 43.443 366 156 9 8 370 7 324 3.43e-99 298
MsG0180005142.01.T01 MTR_4g072340 43.380 355 157 6 17 370 17 328 1.89e-98 296
MsG0180005142.01.T01 MTR_3g116080 36.857 350 191 8 22 363 17 344 1.36e-62 204
MsG0180005142.01.T01 MTR_4g079440 34.626 361 205 10 15 367 8 345 1.65e-61 201
MsG0180005142.01.T01 MTR_4g107930 35.112 356 196 10 20 363 9 341 4.11e-59 195
MsG0180005142.01.T01 MTR_5g022560 34.734 357 198 10 19 363 7 340 8.45e-59 194
MsG0180005142.01.T01 MTR_4g047610 36.025 322 176 8 54 363 36 339 8.58e-59 194
MsG0180005142.01.T01 MTR_4g079470 36.499 337 177 11 35 358 24 336 1.42e-57 191
MsG0180005142.01.T01 MTR_4g079770 36.585 328 173 11 44 358 31 336 1.51e-57 191
MsG0180005142.01.T01 MTR_4g080730 35.207 338 176 9 37 358 21 331 3.03e-57 190
MsG0180005142.01.T01 MTR_4g094918 32.718 379 198 11 1 363 1 338 9.58e-57 189
MsG0180005142.01.T01 MTR_4g125300 37.812 320 172 9 56 368 51 350 2.44e-56 188
MsG0180005142.01.T01 MTR_2g016180 36.449 321 172 12 56 363 51 352 5.37e-56 191
MsG0180005142.01.T01 MTR_4g065077 33.422 374 209 11 2 362 6 352 5.48e-56 187
MsG0180005142.01.T01 MTR_4g080700 35.168 327 169 9 48 358 32 331 5.61e-56 187
MsG0180005142.01.T01 MTR_4g079800 34.535 333 183 11 44 363 31 341 2.39e-55 186
MsG0180005142.01.T01 MTR_1g107550 35.988 339 181 12 35 358 30 347 2.82e-55 189
MsG0180005142.01.T01 MTR_4g104370 34.320 338 192 10 34 358 15 335 3.07e-55 186
MsG0180005142.01.T01 MTR_2g090890 35.443 316 171 9 53 358 36 328 5.77e-55 184
MsG0180005142.01.T01 MTR_2g016270 35.826 321 159 12 56 363 51 337 1.33e-54 187
MsG0180005142.01.T01 MTR_1g018840 33.602 372 203 10 5 358 8 353 5.10e-54 185
MsG0180005142.01.T01 MTR_1g018840 33.602 372 203 10 5 358 8 353 5.90e-54 185
MsG0180005142.01.T01 MTR_8g086470 32.703 370 201 11 2 362 22 352 1.61e-53 181
MsG0180005142.01.T01 MTR_2g015850 38.768 276 143 10 100 367 107 364 1.22e-52 179
MsG0180005142.01.T01 MTR_3g075390 32.544 338 199 10 34 358 15 336 1.97e-52 178
MsG0180005142.01.T01 MTR_3g112430 34.769 325 181 11 52 363 32 338 3.04e-51 177
MsG0180005142.01.T01 MTR_3g102220 35.667 300 155 10 76 358 75 353 9.35e-51 177
MsG0180005142.01.T01 MTR_2g083930 34.036 332 181 10 54 367 33 344 1.52e-49 170
MsG0180005142.01.T01 MTR_2g075830 35.016 317 163 12 59 358 42 332 7.25e-49 168
MsG0180005142.01.T01 MTR_4g080360 34.891 321 173 12 55 360 36 335 1.09e-48 168
MsG0180005142.01.T01 MTR_2g015920 29.211 380 202 13 12 360 9 352 1.12e-46 164
MsG0180005142.01.T01 MTR_2g067900 33.735 332 183 12 50 363 10 322 8.63e-46 160
MsG0180005142.01.T01 MTR_7g078600 37.131 237 126 7 137 367 119 338 3.24e-44 156
MsG0180005142.01.T01 MTR_2g015930 30.163 368 213 12 12 359 8 351 9.99e-44 155
MsG0180005142.01.T01 MTR_7g079230 31.288 326 186 11 45 358 28 327 1.78e-43 154
MsG0180005142.01.T01 MTR_2g067560 33.429 350 185 16 50 373 10 337 2.07e-40 152
MsG0180005142.01.T01 MTR_8g087510 47.015 134 62 1 182 315 23 147 4.14e-40 140
MsG0180005142.01.T01 MTR_1g023810 39.286 224 114 8 138 357 46 251 5.29e-39 140
MsG0180005142.01.T01 MTR_2g066980 31.642 335 152 14 54 363 32 314 2.05e-33 127
MsG0180005142.01.T01 MTR_2g064475 28.962 366 192 13 50 372 10 350 2.98e-33 127
MsG0180005142.01.T01 MTR_7g078630 34.715 193 99 6 137 315 762 941 1.72e-24 105
MsG0180005142.01.T01 MTR_1g025450 39.655 116 58 3 136 248 50 156 2.69e-19 89.7
MsG0180005142.01.T01 MTR_2g015840 35.862 145 83 5 59 194 36 179 8.91e-17 80.1
MsG0180005142.01.T01 MTR_7g078310 40.741 108 55 2 137 242 148 248 2.19e-16 79.0
MsG0180005142.01.T01 MTR_7g111050 26.420 352 204 15 49 366 5 335 9.78e-16 78.2
MsG0180005142.01.T01 MTR_2g047960 43.478 92 44 1 145 236 2 85 3.63e-15 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005142.01.T01 AT3G54940 70.118 338 93 2 35 364 23 360 0.0 511
MsG0180005142.01.T01 AT2G21430 56.495 331 138 4 34 363 29 354 2.83e-139 401
MsG0180005142.01.T01 AT4G39090 57.362 326 134 4 48 370 43 366 6.40e-138 398
MsG0180005142.01.T01 AT4G16190 56.418 335 137 6 43 372 42 372 2.94e-131 381
MsG0180005142.01.T01 AT3G54940 66.142 254 78 2 35 280 23 276 4.96e-123 357
MsG0180005142.01.T01 AT1G20850 38.750 320 164 8 56 363 51 350 1.91e-66 214
MsG0180005142.01.T01 AT4G35350 34.341 364 210 8 8 363 7 349 1.39e-62 204
MsG0180005142.01.T01 AT5G60360 38.109 349 178 10 34 368 34 358 3.20e-62 204
MsG0180005142.01.T01 AT5G60360 38.166 338 171 10 34 357 34 347 4.75e-60 198
MsG0180005142.01.T01 AT3G45310 35.979 378 204 14 7 368 3 358 9.75e-60 197
MsG0180005142.01.T01 AT5G60360 37.822 349 178 11 34 368 34 357 1.07e-59 197
MsG0180005142.01.T01 AT1G29090 38.924 316 158 12 59 358 50 346 1.52e-59 197
MsG0180005142.01.T01 AT5G45890 37.576 330 168 11 46 358 29 337 1.66e-59 196
MsG0180005142.01.T01 AT1G06260 36.471 340 181 11 38 363 21 339 7.04e-58 192
MsG0180005142.01.T01 AT3G45310 35.792 366 197 14 7 356 3 346 2.36e-57 191
MsG0180005142.01.T01 AT5G43060 33.424 368 201 13 5 358 8 345 1.04e-56 192
MsG0180005142.01.T01 AT3G19400 35.777 341 182 12 38 363 27 345 1.68e-55 186
MsG0180005142.01.T01 AT4G36880 34.568 324 172 10 76 380 73 375 2.25e-55 186
MsG0180005142.01.T01 AT1G47128 37.584 298 146 9 76 358 72 344 5.25e-55 188
MsG0180005142.01.T01 AT3G19390 36.228 334 163 13 51 363 38 342 3.18e-54 186
MsG0180005142.01.T01 AT2G34080 35.583 326 161 12 55 358 38 336 8.90e-54 181
MsG0180005142.01.T01 AT5G50260 37.124 299 161 7 71 358 52 334 3.09e-53 181
MsG0180005142.01.T01 AT1G29080 36.991 319 169 12 59 363 42 342 5.48e-53 179
MsG0180005142.01.T01 AT1G09850 35.647 317 177 9 56 363 32 330 7.05e-53 181
MsG0180005142.01.T01 AT4G23520 33.746 323 186 9 51 363 42 346 1.09e-52 179
MsG0180005142.01.T01 AT3G48340 35.224 335 172 12 46 358 24 335 1.45e-52 179
MsG0180005142.01.T01 AT4G11320 35.556 315 172 9 56 358 56 351 4.64e-50 172
MsG0180005142.01.T01 AT4G11320 35.556 315 172 9 56 358 56 351 4.64e-50 172
MsG0180005142.01.T01 AT3G49340 33.333 327 175 12 54 361 33 335 8.53e-50 171
MsG0180005142.01.T01 AT3G43960 36.424 302 171 8 56 351 41 327 1.81e-49 171
MsG0180005142.01.T01 AT4G11310 35.312 320 166 10 56 358 49 344 1.87e-49 171
MsG0180005142.01.T01 AT3G48350 31.680 363 209 12 33 377 13 354 2.32e-48 168
MsG0180005142.01.T01 AT2G27420 32.229 332 173 10 54 358 33 339 5.14e-48 166
MsG0180005142.01.T01 AT4G35350 33.571 280 172 4 8 285 7 274 1.13e-47 164
MsG0180005142.01.T01 AT1G29110 33.016 315 166 11 59 358 41 325 3.40e-41 148
MsG0180005142.01.T01 AT3G19400 35.433 254 148 7 38 285 27 270 6.36e-41 146
MsG0180005142.01.T01 AT3G48350 31.321 265 157 8 33 285 13 264 9.94e-34 127
MsG0180005142.01.T01 AT1G02305 27.148 291 167 13 103 366 69 341 7.11e-15 75.9
MsG0180005142.01.T01 AT4G01610 25.532 282 167 12 103 358 66 330 4.47e-14 73.2
MsG0180005142.01.T01 AT4G01610 25.177 282 168 12 103 358 66 330 4.97e-13 70.1
MsG0180005142.01.T01 AT1G02300 26.068 234 135 9 158 369 144 361 8.97e-12 66.2

Find 91 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACTAAATAAGCAGCAATT+TGG 0.276229 1:+87506304 None:intergenic
CACAAGGTTTCTCGATTCTT+AGG 0.295720 1:-87505936 MsG0180005142.01.T01:CDS
GCTTGAGGCTGGTGGATTAG+AGG 0.315848 1:-87506433 MsG0180005142.01.T01:CDS
TTCCCTTGTAGAGTAAGTTT+TGG 0.331460 1:+87507545 None:intergenic
GAATTCTTGATGATCCAATA+TGG 0.338546 1:+87505901 None:intergenic
AGCCTCAAGCAAATAATTAT+AGG 0.341198 1:+87506446 None:intergenic
CCGCCATGAAAACTTGATTC+AGG 0.341418 1:-87507649 MsG0180005142.01.T01:CDS
AACAGAACTAGGTAGCTAAT+AGG 0.375008 1:+87505747 None:intergenic
TGGCGAGGTTGCACCGCCCT+TGG 0.393236 1:-87507349 MsG0180005142.01.T01:CDS
GATAAGACATCATGTGATAA+TGG 0.394339 1:-87506495 MsG0180005142.01.T01:CDS
GGCGGTGAAACGCAGTTGAT+AGG 0.395575 1:+87507667 None:intergenic
GGCTTCGCAAGAAACCATAT+TGG 0.397056 1:-87505915 MsG0180005142.01.T01:CDS
CTTGATCCAACCGCAATTCA+TGG 0.398823 1:-87507459 MsG0180005142.01.T01:CDS
TATAATTATTTGCTTGAGGC+TGG 0.400349 1:-87506444 MsG0180005142.01.T01:CDS
GTTCTCATCCACAGGTAGAT+TGG 0.415931 1:+87506326 None:intergenic
AGGGTAAATGTGGATCTTGC+TGG 0.419704 1:-87506858 MsG0180005142.01.T01:CDS
ATTCTCTTGCTACATATAAG+AGG 0.422987 1:+87505994 None:intergenic
GGTTGCACCGCCCTTGGATG+TGG 0.428740 1:-87507343 MsG0180005142.01.T01:CDS
CGGTTCTATACCGGTGTTAG+AGG 0.429375 1:-87507396 MsG0180005142.01.T01:CDS
CTTGGATGTGGAAGGATTGC+CGG 0.431739 1:-87507331 MsG0180005142.01.T01:CDS
AAGAGTATTTACTACGCCTT+GGG 0.438150 1:-87507524 MsG0180005142.01.T01:CDS
TGCTGGGCTTTCAGCACTAC+AGG 0.442971 1:-87506841 MsG0180005142.01.T01:CDS
ATACCCGTACACTGGTGGTA+AGG 0.455502 1:-87506400 MsG0180005142.01.T01:CDS
AGCACTACAGGATCTATAGA+AGG 0.470148 1:-87506829 MsG0180005142.01.T01:CDS
GAGTTTGAGCGGTTCTATAC+CGG 0.478459 1:-87507405 MsG0180005142.01.T01:CDS
GAAGAGTATTTACTACGCCT+TGG 0.482670 1:-87507525 MsG0180005142.01.T01:CDS
GAATTTCGATTGGAGGGAGA+AGG 0.483095 1:-87507307 MsG0180005142.01.T01:CDS
AATTTCGATTGGAGGGAGAA+GGG 0.491914 1:-87507306 MsG0180005142.01.T01:CDS
TCATGTGATAATGGTTGTAA+TGG 0.500611 1:-87506486 MsG0180005142.01.T01:CDS
TGCCGGAGAATTTCGATTGG+AGG 0.504986 1:-87507314 MsG0180005142.01.T01:CDS
TCCCTCCAATCGAAATTCTC+CGG 0.505325 1:+87507312 None:intergenic
GCCGGAGAATTTCGATTGGA+GGG 0.506193 1:-87507313 MsG0180005142.01.T01:CDS
CGGCAATCCTTCCACATCCA+AGG 0.507533 1:+87507332 None:intergenic
ACTCCAAAACTTACTCTACA+AGG 0.509081 1:-87507548 MsG0180005142.01.T01:CDS
AACCACGGTGTATTGCTTGT+GGG 0.510752 1:-87505967 MsG0180005142.01.T01:CDS
TACAAGCTTTGCAGAGGGCA+TGG 0.513945 1:-87505847 MsG0180005142.01.T01:CDS
AATTATTTGCTTGAGGCTGG+TGG 0.514952 1:-87506441 MsG0180005142.01.T01:CDS
GCAATTTGGTTCTCATCCAC+AGG 0.515183 1:+87506318 None:intergenic
TTCTATACCGGTGTTAGAGG+TGG 0.515332 1:-87507393 MsG0180005142.01.T01:CDS
TGCCTATAATTATTTGCTTG+AGG 0.515816 1:-87506448 MsG0180005142.01.T01:CDS
GGTGGATTCCCCTCGAGAAA+CGG 0.519839 1:-87507375 MsG0180005142.01.T01:CDS
GATTGCCGGAGAATTTCGAT+TGG 0.521822 1:-87507317 MsG0180005142.01.T01:CDS
TTCATGCAAACTTACATTGG+TGG 0.523262 1:-87506027 MsG0180005142.01.T01:CDS
TCACCCTTACCACCAGTGTA+CGG 0.527618 1:+87506396 None:intergenic
CACCCTTACCACCAGTGTAC+GGG 0.533213 1:+87506397 None:intergenic
GCTGCTTATTTAGTTAATCA+CGG 0.543083 1:-87506297 MsG0180005142.01.T01:CDS
GCGGTGAAACGCAGTTGATA+GGG 0.543444 1:+87507668 None:intergenic
GGCAATCCTTCCACATCCAA+GGG 0.544410 1:+87507333 None:intergenic
CACAATGGTTTCTGCTGCAA+TGG 0.544762 1:-87505809 MsG0180005142.01.T01:CDS
AATGGTTTCTGCTGCAATGG+TGG 0.547337 1:-87505806 MsG0180005142.01.T01:CDS
GAACCACGGTGTATTGCTTG+TGG 0.550119 1:-87505968 MsG0180005142.01.T01:CDS
CTTGTGGGTTATAATGCACA+AGG 0.551826 1:-87505952 MsG0180005142.01.T01:CDS
ATTTCGATTGGAGGGAGAAG+GGG 0.553540 1:-87507305 MsG0180005142.01.T01:CDS
GCACCGCCCTTGGATGTGGA+AGG 0.555789 1:-87507339 MsG0180005142.01.T01:CDS
GGGTAAATGTGGATCTTGCT+GGG 0.557750 1:-87506857 MsG0180005142.01.T01:CDS
TTGCGGTTGGATCAAGTGCT+TGG 0.562169 1:+87507466 None:intergenic
CGCCAACTCCGTTTCTCGAG+GGG 0.564041 1:+87507367 None:intergenic
TTTCGATTGGAGGGAGAAGG+GGG 0.564832 1:-87507304 MsG0180005142.01.T01:CDS
AAACACGTGAGAGATATGAT+TGG 0.566506 1:+87507723 None:intergenic
TAAGGGGACTTACTTGCAAG+TGG 0.568709 1:+87506273 None:intergenic
CTCGCCAACTCCGTTTCTCG+AGG 0.568856 1:+87507365 None:intergenic
TTGGATCATCAAGAATTCGT+GGG 0.578311 1:-87505896 MsG0180005142.01.T01:CDS
TACCCGTACACTGGTGGTAA+GGG 0.579815 1:-87506399 MsG0180005142.01.T01:CDS
TTCCCCTCGAGAAACGGAGT+TGG 0.586466 1:-87507369 MsG0180005142.01.T01:CDS
TTCTCTTGCTACATATAAGA+GGG 0.587349 1:+87505995 None:intergenic
TCGCCAACTCCGTTTCTCGA+GGG 0.588026 1:+87507366 None:intergenic
CTCGAGAAACGGAGTTGGCG+AGG 0.594223 1:-87507364 MsG0180005142.01.T01:CDS
GTAACACCATGAATTGCGGT+TGG 0.604723 1:+87507453 None:intergenic
ATTGGATCATCAAGAATTCG+TGG 0.604812 1:-87505897 MsG0180005142.01.T01:CDS
TGTTACTGGAGTCAAGATGC+AGG 0.607732 1:-87507280 MsG0180005142.01.T01:intron
GGGGAATCCACCTCTAACAC+CGG 0.613162 1:+87507386 None:intergenic
TGCAGAGGGCATGGTATGTG+TGG 0.615133 1:-87505838 MsG0180005142.01.T01:CDS
TCTTAGTGAACAACAGCTTG+TGG 0.616431 1:-87506773 MsG0180005142.01.T01:CDS
GGGTATTACAAGCTTTGCAG+AGG 0.620670 1:-87505853 MsG0180005142.01.T01:CDS
GCTTGTGGACTGTGACAGCA+AGG 0.622428 1:-87506758 MsG0180005142.01.T01:intron
CTCCAAAACTTACTCTACAA+GGG 0.624411 1:-87507547 MsG0180005142.01.T01:CDS
GAAACTTCATACCCGTACAC+TGG 0.628584 1:-87506408 MsG0180005142.01.T01:CDS
GGTATTACAAGCTTTGCAGA+GGG 0.636304 1:-87505852 MsG0180005142.01.T01:CDS
CTGAGTAACACCATGAATTG+CGG 0.643000 1:+87507449 None:intergenic
TGTGATAATGGTTGTAATGG+AGG 0.643668 1:-87506483 MsG0180005142.01.T01:CDS
GTTCTCTGATCTCTCTGACG+AGG 0.654499 1:-87507427 MsG0180005142.01.T01:CDS
TGAGGCTGGTGGATTAGAGG+AGG 0.654720 1:-87506430 MsG0180005142.01.T01:CDS
ACTTCATACCCGTACACTGG+TGG 0.657388 1:-87506405 MsG0180005142.01.T01:CDS
AATCCTTCCACATCCAAGGG+CGG 0.664048 1:+87507336 None:intergenic
TTGATAGGGTTAGAGCGTAG+AGG 0.669135 1:+87507682 None:intergenic
TGGATCATCAAGAATTCGTG+GGG 0.675621 1:-87505895 MsG0180005142.01.T01:CDS
AAATTTCACCAATCTACCTG+TGG 0.676633 1:-87506334 MsG0180005142.01.T01:CDS
TCTCTGACGAGGAGTTTGAG+CGG 0.687292 1:-87507416 MsG0180005142.01.T01:CDS
AGCAAGAGAATGCTGAACCA+CGG 0.698635 1:-87505982 MsG0180005142.01.T01:CDS
AACCCACAAGCAATACACCG+TGG 0.800815 1:+87505965 None:intergenic
TATGTGTGGAATGAACACAA+TGG 0.864374 1:-87505824 MsG0180005142.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAATAAATAAAAAAA+TGG - Chr1:87506570-87506589 MsG0180005142.01.T01:intron 0.0%
!!! AAATTAAACAGTTTTTATTT+AGG + Chr1:87506613-87506632 None:intergenic 10.0%
!! AATGTGATATTTATAGTAAT+AGG - Chr1:87506362-87506381 MsG0180005142.01.T01:CDS 15.0%
!! AGAACTTTGTAATTAATTAA+GGG + Chr1:87507244-87507263 None:intergenic 15.0%
!! TAGAACTTTGTAATTAATTA+AGG + Chr1:87507245-87507264 None:intergenic 15.0%
!!! TATTTATGTTTCTAATGATT+AGG - Chr1:87506493-87506512 MsG0180005142.01.T01:CDS 15.0%
!!! TTGTTTTTTTATTTACAATG+AGG - Chr1:87506405-87506424 MsG0180005142.01.T01:CDS 15.0%
!! AACTTAAATAAATTACATCC+CGG + Chr1:87506519-87506538 None:intergenic 20.0%
!! AAGTATAGAACATAGTTAAT+TGG + Chr1:87506817-87506836 None:intergenic 20.0%
!! GAACTTTGTAATTAATTAAG+GGG + Chr1:87507243-87507262 None:intergenic 20.0%
!!! AAACTGTTTAATTTTGAAAC+AGG - Chr1:87506619-87506638 MsG0180005142.01.T01:intron 20.0%
!!! AACTGTTTAATTTTGAAACA+GGG - Chr1:87506620-87506639 MsG0180005142.01.T01:intron 20.0%
!!! ATTTTAACTGCAATTTTCTT+TGG + Chr1:87507140-87507159 None:intergenic 20.0%
!!! TAATCTTCTGTTTTATTAAC+TGG - Chr1:87506933-87506952 MsG0180005142.01.T01:intron 20.0%
!!! TTATTTAGGATAATGTTTCA+TGG + Chr1:87506599-87506618 None:intergenic 20.0%
! CAAACTAGAAATTTCAAACA+TGG + Chr1:87506291-87506310 None:intergenic 25.0%
! TAACTAAATAAGCAGCAATT+TGG + Chr1:87507196-87507215 None:intergenic 25.0%
!!! CATGTTTGAAATTTCTAGTT+TGG - Chr1:87506289-87506308 MsG0180005142.01.T01:CDS 25.0%
AGCCTCAAGCAAATAATTAT+AGG + Chr1:87507054-87507073 None:intergenic 30.0%
ATTCTCTTGCTACATATAAG+AGG + Chr1:87507506-87507525 None:intergenic 30.0%
GATAAGACATCATGTGATAA+TGG - Chr1:87507002-87507021 MsG0180005142.01.T01:intron 30.0%
GCTGCTTATTTAGTTAATCA+CGG - Chr1:87507200-87507219 MsG0180005142.01.T01:intron 30.0%
TATAATTATTTGCTTGAGGC+TGG - Chr1:87507053-87507072 MsG0180005142.01.T01:intron 30.0%
TGCCTATAATTATTTGCTTG+AGG - Chr1:87507049-87507068 MsG0180005142.01.T01:intron 30.0%
TTCTCTTGCTACATATAAGA+GGG + Chr1:87507505-87507524 None:intergenic 30.0%
! GAATTCTTGATGATCCAATA+TGG + Chr1:87507599-87507618 None:intergenic 30.0%
! GTTTTCATGCAAACTTACAT+TGG - Chr1:87507467-87507486 MsG0180005142.01.T01:CDS 30.0%
! TATGTTTCTAATGATTAGGC+CGG - Chr1:87506497-87506516 MsG0180005142.01.T01:CDS 30.0%
!! TCATGTGATAATGGTTGTAA+TGG - Chr1:87507011-87507030 MsG0180005142.01.T01:intron 30.0%
!!! ATTTTGAAACAGGGTAAATG+TGG - Chr1:87506629-87506648 MsG0180005142.01.T01:intron 30.0%
AAACACGTGAGAGATATGAT+TGG + Chr1:87505777-87505796 None:intergenic 35.0%
AAATTTCACCAATCTACCTG+TGG - Chr1:87507163-87507182 MsG0180005142.01.T01:intron 35.0%
ACTCCAAAACTTACTCTACA+AGG - Chr1:87505949-87505968 MsG0180005142.01.T01:CDS 35.0%
ATTGGATCATCAAGAATTCG+TGG - Chr1:87507600-87507619 MsG0180005142.01.T01:CDS 35.0%
CTCCAAAACTTACTCTACAA+GGG - Chr1:87505950-87505969 MsG0180005142.01.T01:CDS 35.0%
GAGAAAAATGGGGAGAAAAA+GGG - Chr1:87507624-87507643 MsG0180005142.01.T01:CDS 35.0%
GATGAATTGCGAAACTTAGA+CGG - Chr1:87507281-87507300 MsG0180005142.01.T01:CDS 35.0%
TATGTGTGGAATGAACACAA+TGG - Chr1:87507673-87507692 MsG0180005142.01.T01:CDS 35.0%
TGTTATGTCACACTTGACAA+AGG + Chr1:87506982-87507001 None:intergenic 35.0%
TTCATGCAAACTTACATTGG+TGG - Chr1:87507470-87507489 MsG0180005142.01.T01:CDS 35.0%
TTGGATCATCAAGAATTCGT+GGG - Chr1:87507601-87507620 MsG0180005142.01.T01:CDS 35.0%
! AAGATTAGCAAGAGCATAGT+TGG + Chr1:87506920-87506939 None:intergenic 35.0%
! ATGTTTCTAATGATTAGGCC+GGG - Chr1:87506498-87506517 MsG0180005142.01.T01:CDS 35.0%
! CATCCTGAATCAAGTTTTCA+TGG + Chr1:87505854-87505873 None:intergenic 35.0%
! TGGGATTTTTGCCAAAAACT+TGG - Chr1:87505992-87506011 MsG0180005142.01.T01:CDS 35.0%
! TTCCCTTGTAGAGTAAGTTT+TGG + Chr1:87505955-87505974 None:intergenic 35.0%
! TTTTCCTGTGGCAAGAAAAT+TGG + Chr1:87506696-87506715 None:intergenic 35.0%
!! AAGAGTATTTACTACGCCTT+GGG - Chr1:87505973-87505992 MsG0180005142.01.T01:CDS 35.0%
!! TGTGATAATGGTTGTAATGG+AGG - Chr1:87507014-87507033 MsG0180005142.01.T01:intron 35.0%
!!! AGTTTTTGGCAAAAATCCCA+AGG + Chr1:87505992-87506011 None:intergenic 35.0%
!!! GCATATGATTTGTTTTCAGC+AGG + Chr1:87507728-87507747 None:intergenic 35.0%
AACTCTAATCATGTGCAGTG+GGG - Chr1:87507435-87507454 MsG0180005142.01.T01:CDS 40.0%
AATTATTTGCTTGAGGCTGG+TGG - Chr1:87507056-87507075 MsG0180005142.01.T01:intron 40.0%
AATTCGTGGGGAGAAAAATG+GGG - Chr1:87507614-87507633 MsG0180005142.01.T01:CDS 40.0%
AATTTCGATTGGAGGGAGAA+GGG - Chr1:87506191-87506210 MsG0180005142.01.T01:intron 40.0%
AGAATTCGTGGGGAGAAAAA+TGG - Chr1:87507612-87507631 MsG0180005142.01.T01:CDS 40.0%
AGCACTACAGGATCTATAGA+AGG - Chr1:87506668-87506687 MsG0180005142.01.T01:intron 40.0%
CAAAAACTTGGTCAAAGCTG+TGG - Chr1:87506004-87506023 MsG0180005142.01.T01:CDS 40.0%
CACAAGGTTTCTCGATTCTT+AGG - Chr1:87507561-87507580 MsG0180005142.01.T01:CDS 40.0%
CTGAGTAACACCATGAATTG+CGG + Chr1:87506051-87506070 None:intergenic 40.0%
GAACTCTAATCATGTGCAGT+GGG - Chr1:87507434-87507453 MsG0180005142.01.T01:CDS 40.0%
GAATTCGTGGGGAGAAAAAT+GGG - Chr1:87507613-87507632 MsG0180005142.01.T01:CDS 40.0%
GGAGAAAAATGGGGAGAAAA+AGG - Chr1:87507623-87507642 MsG0180005142.01.T01:CDS 40.0%
GGTATTACAAGCTTTGCAGA+GGG - Chr1:87507645-87507664 MsG0180005142.01.T01:CDS 40.0%
TCTTAGTGAACAACAGCTTG+TGG - Chr1:87506724-87506743 MsG0180005142.01.T01:intron 40.0%
TGAACTCTAATCATGTGCAG+TGG - Chr1:87507433-87507452 MsG0180005142.01.T01:CDS 40.0%
TGGATCATCAAGAATTCGTG+GGG - Chr1:87507602-87507621 MsG0180005142.01.T01:CDS 40.0%
! AAGACTGAGTAGTTTTCCTG+TGG + Chr1:87506708-87506727 None:intergenic 40.0%
! CCTGAATCAAGTTTTCATGG+CGG + Chr1:87505851-87505870 None:intergenic 40.0%
! CTTGTGGGTTATAATGCACA+AGG - Chr1:87507545-87507564 MsG0180005142.01.T01:CDS 40.0%
!! CACAGCTTTGACCAAGTTTT+TGG + Chr1:87506006-87506025 None:intergenic 40.0%
!! GAAGAGTATTTACTACGCCT+TGG - Chr1:87505972-87505991 MsG0180005142.01.T01:CDS 40.0%
AACCACGGTGTATTGCTTGT+GGG - Chr1:87507530-87507549 MsG0180005142.01.T01:CDS 45.0%
AATGGTTTCTGCTGCAATGG+TGG - Chr1:87507691-87507710 MsG0180005142.01.T01:CDS 45.0%
ACTCTAATCATGTGCAGTGG+GGG - Chr1:87507436-87507455 MsG0180005142.01.T01:CDS 45.0%
AGCAAGAGAATGCTGAACCA+CGG - Chr1:87507515-87507534 MsG0180005142.01.T01:CDS 45.0%
AGGGTAAATGTGGATCTTGC+TGG - Chr1:87506639-87506658 MsG0180005142.01.T01:intron 45.0%
ATTTCGATTGGAGGGAGAAG+GGG - Chr1:87506192-87506211 MsG0180005142.01.T01:intron 45.0%
CACAATGGTTTCTGCTGCAA+TGG - Chr1:87507688-87507707 MsG0180005142.01.T01:CDS 45.0%
CCGCCATGAAAACTTGATTC+AGG - Chr1:87505848-87505867 MsG0180005142.01.T01:CDS 45.0%
CTATGTAACACCGACACTTC+AGG + Chr1:87507359-87507378 None:intergenic 45.0%
CTTGATCCAACCGCAATTCA+TGG - Chr1:87506038-87506057 MsG0180005142.01.T01:CDS 45.0%
GAAACTTCATACCCGTACAC+TGG - Chr1:87507089-87507108 MsG0180005142.01.T01:intron 45.0%
GAATTTCGATTGGAGGGAGA+AGG - Chr1:87506190-87506209 MsG0180005142.01.T01:intron 45.0%
GAGTTTGAGCGGTTCTATAC+CGG - Chr1:87506092-87506111 MsG0180005142.01.T01:intron 45.0%
GATTGCCGGAGAATTTCGAT+TGG - Chr1:87506180-87506199 MsG0180005142.01.T01:intron 45.0%
GGCTTCGCAAGAAACCATAT+TGG - Chr1:87507582-87507601 MsG0180005142.01.T01:CDS 45.0%
GGGTAAATGTGGATCTTGCT+GGG - Chr1:87506640-87506659 MsG0180005142.01.T01:intron 45.0%
GGGTATTACAAGCTTTGCAG+AGG - Chr1:87507644-87507663 MsG0180005142.01.T01:CDS 45.0%
GTAACACCATGAATTGCGGT+TGG + Chr1:87506047-87506066 None:intergenic 45.0%
GTTCTCATCCACAGGTAGAT+TGG + Chr1:87507174-87507193 None:intergenic 45.0%
TAAGGGGACTTACTTGCAAG+TGG + Chr1:87507227-87507246 None:intergenic 45.0%
TCCCTCCAATCGAAATTCTC+CGG + Chr1:87506188-87506207 None:intergenic 45.0%
TGTTACTGGAGTCAAGATGC+AGG - Chr1:87506217-87506236 MsG0180005142.01.T01:intron 45.0%
TTGATAGGGTTAGAGCGTAG+AGG + Chr1:87505818-87505837 None:intergenic 45.0%
! TTCTATACCGGTGTTAGAGG+TGG - Chr1:87506104-87506123 MsG0180005142.01.T01:intron 45.0%
!! GCAATTTGGTTCTCATCCAC+AGG + Chr1:87507182-87507201 None:intergenic 45.0%
AACCCACAAGCAATACACCG+TGG + Chr1:87507535-87507554 None:intergenic 50.0%
AATCCTTCCACATCCAAGGG+CGG + Chr1:87506164-87506183 None:intergenic 50.0%
ACTTCATACCCGTACACTGG+TGG - Chr1:87507092-87507111 MsG0180005142.01.T01:intron 50.0%
ATACCCGTACACTGGTGGTA+AGG - Chr1:87507097-87507116 MsG0180005142.01.T01:intron 50.0%
ATGTGCAGTGGGGGTAAATG+CGG - Chr1:87507445-87507464 MsG0180005142.01.T01:CDS 50.0%
CTCCGACAAACCTGAAGTGT+CGG - Chr1:87507346-87507365 MsG0180005142.01.T01:CDS 50.0%
CTTGGATGTGGAAGGATTGC+CGG - Chr1:87506166-87506185 MsG0180005142.01.T01:intron 50.0%
GAACCACGGTGTATTGCTTG+TGG - Chr1:87507529-87507548 MsG0180005142.01.T01:CDS 50.0%
GCCGGAGAATTTCGATTGGA+GGG - Chr1:87506184-87506203 MsG0180005142.01.T01:intron 50.0%
GGCAATCCTTCCACATCCAA+GGG + Chr1:87506167-87506186 None:intergenic 50.0%
GTTCTCTGATCTCTCTGACG+AGG - Chr1:87506070-87506089 MsG0180005142.01.T01:intron 50.0%
TACAAGCTTTGCAGAGGGCA+TGG - Chr1:87507650-87507669 MsG0180005142.01.T01:CDS 50.0%
TACCCGTACACTGGTGGTAA+GGG - Chr1:87507098-87507117 MsG0180005142.01.T01:intron 50.0%
TCACCCTTACCACCAGTGTA+CGG + Chr1:87507104-87507123 None:intergenic 50.0%
TCTCTGACGAGGAGTTTGAG+CGG - Chr1:87506081-87506100 MsG0180005142.01.T01:intron 50.0%
TGCCGGAGAATTTCGATTGG+AGG - Chr1:87506183-87506202 MsG0180005142.01.T01:intron 50.0%
TTGCGGTTGGATCAAGTGCT+TGG + Chr1:87506034-87506053 None:intergenic 50.0%
TTTCGATTGGAGGGAGAAGG+GGG - Chr1:87506193-87506212 MsG0180005142.01.T01:intron 50.0%
! CACCGACACTTCAGGTTTGT+CGG + Chr1:87507351-87507370 None:intergenic 50.0%
! CGGTTCTATACCGGTGTTAG+AGG - Chr1:87506101-87506120 MsG0180005142.01.T01:intron 50.0%
! GCGGTGAAACGCAGTTGATA+GGG + Chr1:87505832-87505851 None:intergenic 50.0%
! GGAGCCAATTTTCTTGCCAC+AGG - Chr1:87506689-87506708 MsG0180005142.01.T01:intron 50.0%
CACCCTTACCACCAGTGTAC+GGG + Chr1:87507103-87507122 None:intergenic 55.0%
CGGCAATCCTTCCACATCCA+AGG + Chr1:87506168-87506187 None:intergenic 55.0%
GGCGGTGAAACGCAGTTGAT+AGG + Chr1:87505833-87505852 None:intergenic 55.0%
GGGGAATCCACCTCTAACAC+CGG + Chr1:87506114-87506133 None:intergenic 55.0%
TCGCCAACTCCGTTTCTCGA+GGG + Chr1:87506134-87506153 None:intergenic 55.0%
TGCTGGGCTTTCAGCACTAC+AGG - Chr1:87506656-87506675 MsG0180005142.01.T01:intron 55.0%
TTCCCCTCGAGAAACGGAGT+TGG - Chr1:87506128-87506147 MsG0180005142.01.T01:intron 55.0%
! GCTTGTGGACTGTGACAGCA+AGG - Chr1:87506739-87506758 MsG0180005142.01.T01:intron 55.0%
! GGTGGATTCCCCTCGAGAAA+CGG - Chr1:87506122-87506141 MsG0180005142.01.T01:intron 55.0%
! TGCAGAGGGCATGGTATGTG+TGG - Chr1:87507659-87507678 MsG0180005142.01.T01:CDS 55.0%
!! GCTTGAGGCTGGTGGATTAG+AGG - Chr1:87507064-87507083 MsG0180005142.01.T01:intron 55.0%
!! TGAGGCTGGTGGATTAGAGG+AGG - Chr1:87507067-87507086 MsG0180005142.01.T01:intron 55.0%
AGGGAGAAGGGGGCTGTTAC+TGG - Chr1:87506203-87506222 MsG0180005142.01.T01:intron 60.0%
CGCCAACTCCGTTTCTCGAG+GGG + Chr1:87506133-87506152 None:intergenic 60.0%
CTCGAGAAACGGAGTTGGCG+AGG - Chr1:87506133-87506152 MsG0180005142.01.T01:intron 60.0%
CTCGCCAACTCCGTTTCTCG+AGG + Chr1:87506135-87506154 None:intergenic 60.0%
GCACCGCCCTTGGATGTGGA+AGG - Chr1:87506158-87506177 MsG0180005142.01.T01:intron 65.0%
GGTTGCACCGCCCTTGGATG+TGG - Chr1:87506154-87506173 MsG0180005142.01.T01:intron 65.0%
TGGCGAGGTTGCACCGCCCT+TGG - Chr1:87506148-87506167 MsG0180005142.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 87505762 87507757 87505762 ID=MsG0180005142.01;Name=MsG0180005142.01
Chr1 mRNA 87505762 87507757 87505762 ID=MsG0180005142.01.T01;Parent=MsG0180005142.01;Name=MsG0180005142.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|4|0|381
Chr1 exon 87507281 87507757 87507281 ID=MsG0180005142.01.T01:exon:47689;Parent=MsG0180005142.01.T01
Chr1 exon 87506759 87506878 87506759 ID=MsG0180005142.01.T01:exon:47688;Parent=MsG0180005142.01.T01
Chr1 exon 87506286 87506529 87506286 ID=MsG0180005142.01.T01:exon:47687;Parent=MsG0180005142.01.T01
Chr1 exon 87505762 87506066 87505762 ID=MsG0180005142.01.T01:exon:47686;Parent=MsG0180005142.01.T01
Chr1 CDS 87507281 87507757 87507281 ID=MsG0180005142.01.T01:cds;Parent=MsG0180005142.01.T01
Chr1 CDS 87506759 87506878 87506759 ID=MsG0180005142.01.T01:cds;Parent=MsG0180005142.01.T01
Chr1 CDS 87506286 87506529 87506286 ID=MsG0180005142.01.T01:cds;Parent=MsG0180005142.01.T01
Chr1 CDS 87505762 87506066 87505762 ID=MsG0180005142.01.T01:cds;Parent=MsG0180005142.01.T01
Gene Sequence

>MsG0180005142.01.T01

ATGGTAACAAAACCAATCATATCTCTCACGTGTTTTGCACGTGTTACAATCTTCCTCTACGCTCTAACCCTATCAACTGCGTTTCACCGCCATGAAAACTTGATTCAGGATGTAGCTAAAAAGCTTGAACTCAAAGACAACGAGCTTCTGAAAACTGAGAAGAAGTTCAAAGTTTTCATGCAAGATTACTCCAAAACTTACTCTACAAGGGAAGAGTATTTACTACGCCTTGGGATTTTTGCCAAAAACTTGGTCAAAGCTGTGGAACACCAAGCACTTGATCCAACCGCAATTCATGGTGTTACTCAGTTCTCTGATCTCTCTGACGAGGAGTTTGAGCGGTTCTATACCGGTGTTAGAGGTGGATTCCCCTCGAGAAACGGAGTTGGCGAGGTTGCACCGCCCTTGGATGTGGAAGGATTGCCGGAGAATTTCGATTGGAGGGAGAAGGGGGCTGTTACTGGAGTCAAGATGCAGGGTAAATGTGGATCTTGCTGGGCTTTCAGCACTACAGGATCTATAGAAGGAGCCAATTTTCTTGCCACAGGAAAACTACTCAGTCTTAGTGAACAACAGCTTGTGGACTGTGACAGCAAGTGTGACATAACAGATAAGACATCATGTGATAATGGTTGTAATGGAGGTCTTATGACAAATGCCTATAATTATTTGCTTGAGGCTGGTGGATTAGAGGAGGAAACTTCATACCCGTACACTGGTGGTAAGGGTGAATGCAAGTTTGATCCAAAGAAAATTGCAGTTAAAATCACAAATTTCACCAATCTACCTGTGGATGAGAACCAAATTGCTGCTTATTTAGTTAATCACGGTCCACTTGCAATGGGGGTAAATGCGGTTTTCATGCAAACTTACATTGGTGGTGTATCATGCCCTCTTATATGTAGCAAGAGAATGCTGAACCACGGTGTATTGCTTGTGGGTTATAATGCACAAGGTTTCTCGATTCTTAGGCTTCGCAAGAAACCATATTGGATCATCAAGAATTCGTGGGGAGAAAAATGGGGAGAAAAAGGGTATTACAAGCTTTGCAGAGGGCATGGTATGTGTGGAATGAACACAATGGTTTCTGCTGCAATGGTGGCTCAAACACAACCTGCTGAAAACAAATCATATGCTTCCTATTAG
Protein sequence

>MsG0180005142.01.T01

MVTKPIISLTCFARVTIFLYALTLSTAFHRHENLIQDVAKKLELKDNELLKTEKKFKVFMQDYSKTYSTREEYLLRLGIFAKNLVKAVEHQALDPTAIHGVTQFSDLSDEEFERFYTGVRGGFPSRNGVGEVAPPLDVEGLPENFDWREKGAVTGVKMQGKCGSCWAFSTTGSIEGANFLATGKLLSLSEQQLVDCDSKCDITDKTSCDNGCNGGLMTNAYNYLLEAGGLEEETSYPYTGGKGECKFDPKKIAVKITNFTNLPVDENQIAAYLVNHGPLAMGVNAVFMQTYIGGVSCPLICSKRMLNHGVLLVGYNAQGFSILRLRKKPYWIIKNSWGEKWGEKGYYKLCRGHGMCGMNTMVSAAMVAQTQPAENKSYASY*