AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010103.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010103.01.T01 MTR_2g078030 93.050 259 14 2 3 260 5 260 6.59e-160 448
MsG0280010103.01.T01 MTR_2g078030 92.395 263 14 3 1 260 1 260 1.08e-159 447
MsG0280010103.01.T01 MTR_8g463930 79.752 242 47 1 21 260 25 266 1.32e-141 402
MsG0280010103.01.T01 MTR_3g073370 38.265 196 114 4 61 251 112 305 2.01e-37 136
MsG0280010103.01.T01 MTR_3g073370 38.265 196 114 4 61 251 111 304 2.21e-37 136
MsG0280010103.01.T01 MTR_4g048320 36.842 190 114 3 74 258 77 265 3.77e-36 132
MsG0280010103.01.T01 MTR_4g035490 41.081 185 100 4 76 252 113 296 4.23e-36 132
MsG0280010103.01.T01 MTR_4g048320 36.842 190 114 3 74 258 135 323 7.52e-36 132
MsG0280010103.01.T01 MTR_4g013305 38.251 183 107 3 74 251 106 287 4.36e-35 130
MsG0280010103.01.T01 MTR_5g009700 38.202 178 100 5 76 246 27 201 1.40e-33 123
MsG0280010103.01.T01 MTR_5g009700 38.202 178 100 5 76 246 113 287 7.39e-33 123
MsG0280010103.01.T01 MTR_2g088270 36.842 190 114 3 74 258 131 319 1.83e-32 123
MsG0280010103.01.T01 MTR_3g090600 37.158 183 109 4 69 246 106 287 7.13e-29 112
MsG0280010103.01.T01 MTR_3g090600 37.158 183 109 4 69 246 106 287 8.05e-29 112
MsG0280010103.01.T01 MTR_3g090600 37.158 183 107 4 69 246 106 285 8.37e-29 112
MsG0280010103.01.T01 MTR_3g090600 37.158 183 107 4 69 246 106 285 9.87e-29 112
MsG0280010103.01.T01 MTR_1g012800 38.710 186 102 7 72 250 115 295 2.72e-28 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010103.01.T01 AT1G53290 68.539 267 72 3 4 260 5 269 5.91e-127 365
MsG0280010103.01.T01 AT3G14960 69.084 262 73 4 3 260 10 267 3.48e-124 358
MsG0280010103.01.T01 AT2G26100 72.340 188 52 0 73 260 106 293 1.13e-97 291
MsG0280010103.01.T01 AT2G26100 61.475 244 91 1 20 260 50 293 3.39e-97 290
MsG0280010103.01.T01 AT1G77810 39.891 183 104 3 74 251 112 293 1.03e-38 140
MsG0280010103.01.T01 AT1G77810 39.891 183 104 3 74 251 115 296 1.49e-38 139
MsG0280010103.01.T01 AT1G22015 41.327 196 104 4 61 251 115 304 1.37e-36 134
MsG0280010103.01.T01 AT1G33430 41.436 181 100 3 76 251 123 302 1.58e-36 132
MsG0280010103.01.T01 AT1G32930 39.899 198 109 5 70 258 119 315 1.79e-36 134
MsG0280010103.01.T01 AT1G11730 38.298 188 110 3 72 254 110 296 1.86e-36 134
MsG0280010103.01.T01 AT1G33430 41.209 182 101 3 75 251 122 302 6.93e-36 132
MsG0280010103.01.T01 AT1G05170 37.500 184 109 3 73 251 134 316 7.41e-36 132
MsG0280010103.01.T01 AT1G05170 37.500 184 109 3 73 251 134 316 1.75e-35 131
MsG0280010103.01.T01 AT1G33430 39.683 189 102 4 75 251 122 310 1.93e-33 126
MsG0280010103.01.T01 AT4G32120 36.866 217 122 7 45 250 82 294 7.53e-33 123
MsG0280010103.01.T01 AT4G26940 36.667 210 126 4 74 278 136 343 1.04e-32 124
MsG0280010103.01.T01 AT2G32430 37.158 183 109 3 74 251 137 318 9.37e-31 119
MsG0280010103.01.T01 AT5G53340 37.931 174 102 4 78 246 111 283 3.26e-30 116
MsG0280010103.01.T01 AT5G53340 37.931 174 102 4 78 246 111 283 3.79e-30 116
MsG0280010103.01.T01 AT2G25300 40.449 178 95 6 76 246 40 213 1.68e-28 110
MsG0280010103.01.T01 AT2G25300 40.449 178 95 6 76 246 118 291 5.54e-28 110
MsG0280010103.01.T01 AT4G26940 40.972 144 82 2 74 215 136 278 1.16e-25 103

Find 88 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATAGCATTGTTATTATT+TGG 0.151450 2:+64496368 None:intergenic
CGAAGATGTCTGCGCTTAAA+AGG 0.231312 2:-64494764 MsG0280010103.01.T01:CDS
CTAGATCCGTTCGCGTTGTT+TGG 0.244084 2:-64496128 MsG0280010103.01.T01:CDS
CAAACAACGCGAACGGATCT+AGG 0.247402 2:+64496129 None:intergenic
CTGACGATGACATATATTTA+AGG 0.264057 2:-64494533 MsG0280010103.01.T01:CDS
CCTATCGGCAACAACATTTC+TGG 0.290197 2:+64496077 None:intergenic
GTACATAGGATGCATGAAAA+AGG 0.293304 2:-64494363 MsG0280010103.01.T01:CDS
CAGAATTGTGTTTGGTTGGC+TGG 0.315824 2:-64493462 MsG0280010103.01.T01:CDS
TTTCCAAGCAAATTAGATAA+TGG 0.334739 2:+64493736 None:intergenic
TACACTAACCATTTGAGTTT+CGG 0.341334 2:+64494323 None:intergenic
TAGATCCGTTCGCGTTGTTT+GGG 0.344788 2:-64496127 MsG0280010103.01.T01:CDS
TCATGCATCCTATGTACGTC+TGG 0.353445 2:+64494369 None:intergenic
GTCAGCTTTGACATAAAATT+CGG 0.360133 2:+64494551 None:intergenic
ACCGGAACTGTAAGAAGTTC+CGG 0.363589 2:+64496312 None:intergenic
TGGTTTCCTTCCGATCCTAA+TGG 0.377181 2:-64495979 MsG0280010103.01.T01:CDS
TTCCATTCCTCAACCACAAC+CGG 0.385003 2:-64496331 MsG0280010103.01.T01:five_prime_UTR
TGCCGATAGGCATAAGGTTA+TGG 0.390206 2:-64496064 MsG0280010103.01.T01:CDS
ACCGGAACTTCTTACAGTTC+CGG 0.391811 2:-64496313 MsG0280010103.01.T01:five_prime_UTR
GCATTTGTCGGTATTCAGAC+TGG 0.399480 2:-64496042 MsG0280010103.01.T01:CDS
TGTCAAGCTTGGTCGCTCTT+AGG 0.399911 2:-64493660 MsG0280010103.01.T01:CDS
TAGTACCGTTGAAGTCCATT+AGG 0.400530 2:+64495964 None:intergenic
AGTTTCGGATCAGTGAAAAC+AGG 0.412422 2:+64494338 None:intergenic
TGACTTTAATGCATTGAAGA+TGG 0.422499 2:+64496587 None:intergenic
TTGGAAGGCGTGAATCTTTG+AGG 0.424287 2:-64496008 MsG0280010103.01.T01:CDS
TGCTGATGTTGTGTCAAGCT+TGG 0.426295 2:-64493671 MsG0280010103.01.T01:CDS
TGGTCGCTCTTAGGAATAAC+AGG 0.428844 2:-64493651 MsG0280010103.01.T01:intron
AGAAGTTCCGGTTGTGGTTG+AGG 0.429886 2:+64496324 None:intergenic
GAGCCATTATCTAATTTGCT+TGG 0.431342 2:-64493739 MsG0280010103.01.T01:CDS
GTTCGCGTTGTTTGGGATCA+CGG 0.448653 2:-64496120 MsG0280010103.01.T01:CDS
ATCATTGTCAGAATTGTGTT+TGG 0.452090 2:-64493470 MsG0280010103.01.T01:CDS
GTGGTTGAGGAATGGAATAA+TGG 0.454082 2:+64496337 None:intergenic
CGCTGTAGCTGTCGTAGTAT+AGG 0.462392 2:-64496503 MsG0280010103.01.T01:five_prime_UTR
CATAAGGTTATGGCATTTGT+CGG 0.466732 2:-64496054 MsG0280010103.01.T01:CDS
TGTTGTTGCCGATAGGCATA+AGG 0.472626 2:-64496070 MsG0280010103.01.T01:CDS
TCAGCAGAAAGAGCATATAT+AGG 0.474635 2:+64493688 None:intergenic
CGATGAGGAGTAAAAGGAGG+AGG 0.476875 2:+64496196 None:intergenic
ATTTCTGGCGCCGTTGGTGA+CGG 0.479564 2:+64496092 None:intergenic
TCACTGATCCGAAACTCAAA+TGG 0.480790 2:-64494331 MsG0280010103.01.T01:intron
ATTATCTAATTTGCTTGGAA+AGG 0.483371 2:-64493734 MsG0280010103.01.T01:CDS
TGCAGCTTGGAAGAAGCTAC+TGG 0.486651 2:-64494828 MsG0280010103.01.T01:intron
GGAGGAGGAAGGTGATGAGG+AGG 0.489252 2:+64496211 None:intergenic
CAGACTGGGTTTAGATCTGT+TGG 0.492313 2:-64496027 MsG0280010103.01.T01:CDS
TGAGAATCTGCGAAGGGGAA+TGG 0.496211 2:+64496242 None:intergenic
GTGTGACGTGGGTTGAAGAA+TGG 0.496529 2:+64496264 None:intergenic
ACGTGGGTTGAAGAATGGTT+TGG 0.499262 2:+64496269 None:intergenic
TTCCGGTTGTGGTTGAGGAA+TGG 0.501352 2:+64496329 None:intergenic
AACAACATTTCTGGCGCCGT+TGG 0.510437 2:+64496086 None:intergenic
GAAGATGTCTGCGCTTAAAA+GGG 0.512202 2:-64494763 MsG0280010103.01.T01:CDS
GAGGAGTAAAAGGAGGAGGA+AGG 0.516677 2:+64496200 None:intergenic
CATTTGTCGGTATTCAGACT+GGG 0.517713 2:-64496041 MsG0280010103.01.T01:CDS
AAAGGAGGAGGAAGGTGATG+AGG 0.518968 2:+64496208 None:intergenic
CTTGGAAGAAGCTACTGGAT+TGG 0.520233 2:-64494823 MsG0280010103.01.T01:CDS
AAACAACGCGAACGGATCTA+GGG 0.523178 2:+64496130 None:intergenic
ATGAGAAAGGTGGTGACAGA+GGG 0.525203 2:+64496432 None:intergenic
TTGTCAGAATTGTGTTTGGT+TGG 0.525213 2:-64493466 MsG0280010103.01.T01:CDS
GTGAATCTTTGAGGAAGACT+TGG 0.526407 2:-64495999 MsG0280010103.01.T01:CDS
GTAGCTGTCGTAGTATAGGT+GGG 0.526777 2:-64496499 MsG0280010103.01.T01:five_prime_UTR
CGAAGGGGAATGGTGTGACG+TGG 0.533817 2:+64496252 None:intergenic
TCTCATTCCCAGACGTACAT+AGG 0.534214 2:-64494377 MsG0280010103.01.T01:CDS
CACGGCAACGCCGTCACCAA+CGG 0.537116 2:-64496102 MsG0280010103.01.T01:CDS
CATGCATCCTATGTACGTCT+GGG 0.539002 2:+64494370 None:intergenic
TGCCATAACCTTATGCCTAT+CGG 0.542296 2:+64496062 None:intergenic
TGTAGCTGTCGTAGTATAGG+TGG 0.553558 2:-64496500 MsG0280010103.01.T01:five_prime_UTR
TATTCAATTGGATATTGAAG+AGG 0.563703 2:-64494718 MsG0280010103.01.T01:CDS
GATGAGAAAGGTGGTGACAG+AGG 0.574691 2:+64496431 None:intergenic
GATGACATATATTTAAGGCC+AGG 0.575920 2:-64494528 MsG0280010103.01.T01:intron
AAACGATGAGGAGTAAAAGG+AGG 0.582478 2:+64496193 None:intergenic
ATGGTTTGGAAGGCATTGTG+AGG 0.591827 2:+64496283 None:intergenic
TGAAGAATGAGAATCTGCGA+AGG 0.595531 2:+64496235 None:intergenic
ACACAATTCTGACAATGATG+TGG 0.596035 2:+64493474 None:intergenic
CCAGAAATGTTGTTGCCGAT+AGG 0.597294 2:-64496077 MsG0280010103.01.T01:CDS
ACTGTAAGAAGTTCCGGTTG+TGG 0.600300 2:+64496318 None:intergenic
GGGTTGAAGAATGGTTTGGA+AGG 0.603310 2:+64496273 None:intergenic
TGAAGTCCATTAGGATCGGA+AGG 0.604237 2:+64495973 None:intergenic
CTGGGTTTAGATCTGTTGGA+AGG 0.609512 2:-64496023 MsG0280010103.01.T01:CDS
CCGTTGAAGTCCATTAGGAT+CGG 0.614621 2:+64495969 None:intergenic
CTATACTACGACAGCTACAG+CGG 0.623885 2:+64496504 None:intergenic
ATGAAGAATGAGAGAGACAG+TGG 0.624078 2:+64496401 None:intergenic
TGACAATGATGTGGAACAGA+CGG 0.626130 2:+64493483 None:intergenic
GAAGAATGAGAATCTGCGAA+GGG 0.627764 2:+64496236 None:intergenic
CCGATCCTAATGGACTTCAA+CGG 0.632210 2:-64495969 MsG0280010103.01.T01:intron
GTGATCCCAAACAACGCGAA+CGG 0.639513 2:+64496122 None:intergenic
GTTTCGGATCAGTGAAAACA+GGG 0.647891 2:+64494339 None:intergenic
AGTGGAACTGATGATGAGAA+AGG 0.654373 2:+64496419 None:intergenic
GAAGGGGAATGGTGTGACGT+GGG 0.674684 2:+64496253 None:intergenic
TAGCTGTCGTAGTATAGGTG+GGG 0.674934 2:-64496498 MsG0280010103.01.T01:five_prime_UTR
AAGAATGAGAATCTGCGAAG+GGG 0.692002 2:+64496237 None:intergenic
GGAACTGATGATGAGAAAGG+TGG 0.730968 2:+64496422 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATAACATTAAATTGTTT+TGG - Chr2:64494730-64494749 MsG0280010103.01.T01:CDS 10.0%
!! AATTTATGAATCTTTAATTC+GGG - Chr2:64496057-64496076 MsG0280010103.01.T01:CDS 15.0%
!! ATGTAATTTCCAATATTTAT+GGG - Chr2:64496241-64496260 MsG0280010103.01.T01:CDS 15.0%
!! GAATTTATGAATCTTTAATT+CGG - Chr2:64496056-64496075 MsG0280010103.01.T01:CDS 15.0%
!!! TTTTTCAACAAAAATTCTAT+TGG + Chr2:64493609-64493628 None:intergenic 15.0%
!! AAAATATGGTCATTTATTAC+AGG - Chr2:64495547-64495566 MsG0280010103.01.T01:intron 20.0%
!! AATAGCAATAAATCAATATG+AGG + Chr2:64495307-64495326 None:intergenic 20.0%
!! CATGTAATTTCCAATATTTA+TGG - Chr2:64496240-64496259 MsG0280010103.01.T01:CDS 20.0%
!! GAAAAAATAAAGAATGAAGA+AGG - Chr2:64493623-64493642 MsG0280010103.01.T01:intron 20.0%
!! GTAATAACAACATTAAAACT+GGG + Chr2:64495678-64495697 None:intergenic 20.0%
!! TGTAATAACAACATTAAAAC+TGG + Chr2:64495679-64495698 None:intergenic 20.0%
!! TGTAATTTCCAATATTTATG+GGG - Chr2:64496242-64496261 MsG0280010103.01.T01:CDS 20.0%
!!! ATATGACGATTTTATTCAAT+TGG - Chr2:64495428-64495447 MsG0280010103.01.T01:intron 20.0%
!!! ATCATAGCATTGTTATTATT+TGG + Chr2:64493793-64493812 None:intergenic 20.0%
!!! GTTTTACTTATCATTTTACT+TGG - Chr2:64495178-64495197 MsG0280010103.01.T01:intron 20.0%
!!! TAAATGCAAATCTTTTTCAA+TGG - Chr2:64495156-64495175 MsG0280010103.01.T01:intron 20.0%
!!! TTGTTTTTATTGTAGTATTG+AGG - Chr2:64494600-64494619 MsG0280010103.01.T01:intron 20.0%
! AAACTATCAGAGAAACTATT+AGG - Chr2:64494432-64494451 MsG0280010103.01.T01:intron 25.0%
! ACATGTATAAGGAAGATTTA+TGG - Chr2:64494352-64494371 MsG0280010103.01.T01:CDS 25.0%
! AGAAACTATTAGGAAAGATT+TGG - Chr2:64494442-64494461 MsG0280010103.01.T01:intron 25.0%
! AGATTTGGAAATTAATGAGT+TGG - Chr2:64494457-64494476 MsG0280010103.01.T01:intron 25.0%
! ATATATGTAGCATGCAAATA+AGG + Chr2:64496596-64496615 None:intergenic 25.0%
! CAAATAAGTCAATCCAAATA+GGG - Chr2:64494885-64494904 MsG0280010103.01.T01:intron 25.0%
! GATTTATGGATTCTGTAATA+AGG - Chr2:64494366-64494385 MsG0280010103.01.T01:CDS 25.0%
! TATTCAATTGGATATTGAAG+AGG - Chr2:64495440-64495459 MsG0280010103.01.T01:intron 25.0%
! TCAAATAAGTCAATCCAAAT+AGG - Chr2:64494884-64494903 MsG0280010103.01.T01:intron 25.0%
! TGATGAAGAAGAAAAAACTT+TGG + Chr2:64495086-64495105 None:intergenic 25.0%
! TTCTATCATACACCATATTT+CGG + Chr2:64494484-64494503 None:intergenic 25.0%
! TTGCAAAAATCCTGATTATT+TGG + Chr2:64495716-64495735 None:intergenic 25.0%
! TTTCCAAGCAAATTAGATAA+TGG + Chr2:64496425-64496444 None:intergenic 25.0%
!! ATTTAGAACCCCATAAATAT+TGG + Chr2:64496253-64496272 None:intergenic 25.0%
!! ATTTGATGTACTTTTGTTAC+TGG - Chr2:64495240-64495259 MsG0280010103.01.T01:intron 25.0%
!! GTGTTTCTAAGCTAAAAATA+TGG - Chr2:64495533-64495552 MsG0280010103.01.T01:intron 25.0%
!!! AATGTCGATGTTTTGATTTT+AGG - Chr2:64494563-64494582 MsG0280010103.01.T01:CDS 25.0%
!!! ATTATCTAATTTGCTTGGAA+AGG - Chr2:64496424-64496443 MsG0280010103.01.T01:five_prime_UTR 25.0%
!!! TATGATGGGCATAAAATATT+TGG - Chr2:64495924-64495943 MsG0280010103.01.T01:intron 25.0%
!!! TTTCTCTGATAGTTTTTTCT+TGG + Chr2:64494427-64494446 None:intergenic 25.0%
!!! TTTTTTCACTATCTCACTTT+TGG - Chr2:64496617-64496636 MsG0280010103.01.T01:five_prime_UTR 25.0%
AAACGTCTCAACATAAACTA+GGG - Chr2:64496210-64496229 MsG0280010103.01.T01:CDS 30.0%
AATCAAAACCCACTAACATA+AGG + Chr2:64495034-64495053 None:intergenic 30.0%
AGAAAACGAAAGAAACAAGA+TGG + Chr2:64496167-64496186 None:intergenic 30.0%
ATCATTGTCAGAATTGTGTT+TGG - Chr2:64496688-64496707 MsG0280010103.01.T01:five_prime_UTR 30.0%
CAAGTTGTAGACAAAGAAAA+GGG + Chr2:64496535-64496554 None:intergenic 30.0%
CTGACGATGACATATATTTA+AGG - Chr2:64495625-64495644 MsG0280010103.01.T01:intron 30.0%
CTTAAAAGAGCCAAATAATC+AGG - Chr2:64495703-64495722 MsG0280010103.01.T01:intron 30.0%
GAAAACGAAAGAAACAAGAT+GGG + Chr2:64496166-64496185 None:intergenic 30.0%
GTGTTGTGTATTACAAGAAT+TGG - Chr2:64494916-64494935 MsG0280010103.01.T01:intron 30.0%
GTTACTGGTGCAATTTATTT+GGG - Chr2:64495255-64495274 MsG0280010103.01.T01:intron 30.0%
TACATAGGATGCATGAAAAA+GGG - Chr2:64495796-64495815 MsG0280010103.01.T01:intron 30.0%
TACTTTGCATAGGTAATGAA+TGG + Chr2:64494974-64494993 None:intergenic 30.0%
TGACTTTAATGCATTGAAGA+TGG + Chr2:64493574-64493593 None:intergenic 30.0%
TGGTGTATGATAGAACATTA+TGG - Chr2:64494489-64494508 MsG0280010103.01.T01:intron 30.0%
TGTAATACACAACACAACTT+AGG + Chr2:64494911-64494930 None:intergenic 30.0%
TGTTACTGGTGCAATTTATT+TGG - Chr2:64495254-64495273 MsG0280010103.01.T01:intron 30.0%
TTACTGGTGCAATTTATTTG+GGG - Chr2:64495256-64495275 MsG0280010103.01.T01:intron 30.0%
! AATGATTTTCATTCCCTTTG+AGG + Chr2:64496125-64496144 None:intergenic 30.0%
! GAGTATTTTCTTCATGCTTA+TGG - Chr2:64496446-64496465 MsG0280010103.01.T01:five_prime_UTR 30.0%
! GTACTAATCTCTTTTTGTTG+AGG - Chr2:64494211-64494230 MsG0280010103.01.T01:intron 30.0%
! GTCAGCTTTGACATAAAATT+CGG + Chr2:64495610-64495629 None:intergenic 30.0%
! TACACTAACCATTTGAGTTT+CGG + Chr2:64495838-64495857 None:intergenic 30.0%
! TCATTTTACAACCAGCATAT+TGG - Chr2:64496350-64496369 MsG0280010103.01.T01:five_prime_UTR 30.0%
! TTGATTTGAAGTCTCATGTT+TGG - Chr2:64494624-64494643 MsG0280010103.01.T01:intron 30.0%
!!! ATTGTTATCTGCCTCTTTTT+TGG - Chr2:64496271-64496290 MsG0280010103.01.T01:CDS 30.0%
!!! TTGGCTTTTAGGTTTGTTAT+TGG - Chr2:64495354-64495373 MsG0280010103.01.T01:intron 30.0%
!!! TTGTTATCTGCCTCTTTTTT+GGG - Chr2:64496272-64496291 MsG0280010103.01.T01:CDS 30.0%
AAAGTTCAGGAAATTAAGCC+AGG + Chr2:64495882-64495901 None:intergenic 35.0%
AACGTCTCAACATAAACTAG+GGG - Chr2:64496211-64496230 MsG0280010103.01.T01:CDS 35.0%
ACACAATTCTGACAATGATG+TGG + Chr2:64496687-64496706 None:intergenic 35.0%
ACGGTTTAAGAAAAACGATG+AGG + Chr2:64493980-64493999 None:intergenic 35.0%
ATAAGGAGAGATGGATCAAA+TGG - Chr2:64494383-64494402 MsG0280010103.01.T01:CDS 35.0%
ATCCGTCTGAATCTAACTAT+TGG - Chr2:64495202-64495221 MsG0280010103.01.T01:intron 35.0%
ATGCCCATCATAAAGTGAAA+TGG + Chr2:64495916-64495935 None:intergenic 35.0%
CAAACGTCTCAACATAAACT+AGG - Chr2:64496209-64496228 MsG0280010103.01.T01:CDS 35.0%
CACCCATTTCACTTTATGAT+GGG - Chr2:64495910-64495929 MsG0280010103.01.T01:intron 35.0%
CATAAGGTTATGGCATTTGT+CGG - Chr2:64494104-64494123 MsG0280010103.01.T01:intron 35.0%
CCAAAAACAAGACCACAAAA+GGG + Chr2:64494948-64494967 None:intergenic 35.0%
CTAGTTTATGTTGAGACGTT+TGG + Chr2:64496211-64496230 None:intergenic 35.0%
GAAAAACGATGAGGAGTAAA+AGG + Chr2:64493971-64493990 None:intergenic 35.0%
GAAAACAAGCTTAGGTGATT+TGG - Chr2:64494329-64494348 MsG0280010103.01.T01:intron 35.0%
GATTCTGTAATAAGGAGAGA+TGG - Chr2:64494374-64494393 MsG0280010103.01.T01:CDS 35.0%
GCAAGTTGTAGACAAAGAAA+AGG + Chr2:64496536-64496555 None:intergenic 35.0%
GCATTATGCCTTATGTTAGT+GGG - Chr2:64495023-64495042 MsG0280010103.01.T01:intron 35.0%
GGGTGAAAATTGAAAAGTTC+AGG + Chr2:64495895-64495914 None:intergenic 35.0%
GTACATAGGATGCATGAAAA+AGG - Chr2:64495795-64495814 MsG0280010103.01.T01:intron 35.0%
GTATGGTAGAAAACAAGCTT+AGG - Chr2:64494321-64494340 MsG0280010103.01.T01:intron 35.0%
GTCCAATAGTTAGATTCAGA+CGG + Chr2:64495207-64495226 None:intergenic 35.0%
TACCCTAACTCTCTCTAATA+CGG + Chr2:64494297-64494316 None:intergenic 35.0%
TACCGTATTAGAGAGAGTTA+GGG - Chr2:64494292-64494311 MsG0280010103.01.T01:intron 35.0%
TAGATTACAACTACTGTCTG+TGG - Chr2:64496034-64496053 MsG0280010103.01.T01:CDS 35.0%
TATGGTCATTTATTACAGGC+TGG - Chr2:64495551-64495570 MsG0280010103.01.T01:intron 35.0%
TCACCCATTTCACTTTATGA+TGG - Chr2:64495909-64495928 MsG0280010103.01.T01:intron 35.0%
TCCAAAAACAAGACCACAAA+AGG + Chr2:64494949-64494968 None:intergenic 35.0%
TGCATTATGCCTTATGTTAG+TGG - Chr2:64495022-64495041 MsG0280010103.01.T01:intron 35.0%
TGCCCATCATAAAGTGAAAT+GGG + Chr2:64495915-64495934 None:intergenic 35.0%
TTACCGTATTAGAGAGAGTT+AGG - Chr2:64494291-64494310 MsG0280010103.01.T01:intron 35.0%
TTGTCAGAATTGTGTTTGGT+TGG - Chr2:64496692-64496711 MsG0280010103.01.T01:five_prime_UTR 35.0%
! AGGTGATTTGGACATGTATA+AGG - Chr2:64494341-64494360 MsG0280010103.01.T01:CDS 35.0%
! GATGACATATATTTAAGGCC+AGG - Chr2:64495630-64495649 MsG0280010103.01.T01:intron 35.0%
! TAATGAGTTGGACCGAAATA+TGG - Chr2:64494469-64494488 MsG0280010103.01.T01:intron 35.0%
! TCAGAACACACGTTTTGTAT+GGG + Chr2:64495479-64495498 None:intergenic 35.0%
! TCAGCAGAAAGAGCATATAT+AGG + Chr2:64496473-64496492 None:intergenic 35.0%
! TTTTCATTGTCGCTATAGAG+AGG + Chr2:64496319-64496338 None:intergenic 35.0%
!! GAGCCATTATCTAATTTGCT+TGG - Chr2:64496419-64496438 MsG0280010103.01.T01:five_prime_UTR 35.0%
!!! AGACAGCGATTGTTTTGAAA+CGG + Chr2:64493999-64494018 None:intergenic 35.0%
!!! ATATTGGCTTCTTTGGCTTT+TGG - Chr2:64496366-64496385 MsG0280010103.01.T01:five_prime_UTR 35.0%
!!! GGCTTTTGGAGTAATTTTAC+CGG - Chr2:64496380-64496399 MsG0280010103.01.T01:five_prime_UTR 35.0%
!!! TGTTATCTGCCTCTTTTTTG+GGG - Chr2:64496273-64496292 MsG0280010103.01.T01:CDS 35.0%
AAACGATGAGGAGTAAAAGG+AGG + Chr2:64493968-64493987 None:intergenic 40.0%
AACACAACTTAGGCCCTATT+TGG + Chr2:64494901-64494920 None:intergenic 40.0%
AAGAATGAGAATCTGCGAAG+GGG + Chr2:64493924-64493943 None:intergenic 40.0%
ACTACATGACCCCAAAAAAG+AGG + Chr2:64496285-64496304 None:intergenic 40.0%
AGATGGATCAAATGGAGGAT+AGG - Chr2:64494391-64494410 MsG0280010103.01.T01:CDS 40.0%
AGTTTCGGATCAGTGAAAAC+AGG + Chr2:64495823-64495842 None:intergenic 40.0%
ATCTTTAATTGTGCCCTTCC+TGG - Chr2:64495861-64495880 MsG0280010103.01.T01:intron 40.0%
ATGAAGAATGAGAGAGACAG+TGG + Chr2:64493760-64493779 None:intergenic 40.0%
CATTTGTCGGTATTCAGACT+GGG - Chr2:64494117-64494136 MsG0280010103.01.T01:intron 40.0%
GAAGAATGAGAATCTGCGAA+GGG + Chr2:64493925-64493944 None:intergenic 40.0%
GAAGATGTCTGCGCTTAAAA+GGG - Chr2:64495395-64495414 MsG0280010103.01.T01:intron 40.0%
GTGGTTGAGGAATGGAATAA+TGG + Chr2:64493824-64493843 None:intergenic 40.0%
GTTTATGTTGAGACGTTTGG+AGG + Chr2:64496208-64496227 None:intergenic 40.0%
GTTTCGGATCAGTGAAAACA+GGG + Chr2:64495822-64495841 None:intergenic 40.0%
TAAACTGCATCAGCCTCAAA+GGG - Chr2:64496109-64496128 MsG0280010103.01.T01:CDS 40.0%
TAGTACCGTTGAAGTCCATT+AGG + Chr2:64494197-64494216 None:intergenic 40.0%
TCACTGATCCGAAACTCAAA+TGG - Chr2:64495827-64495846 MsG0280010103.01.T01:intron 40.0%
TCAGGAAATTAAGCCAGGAA+GGG + Chr2:64495877-64495896 None:intergenic 40.0%
TGAAGAATGAGAATCTGCGA+AGG + Chr2:64493926-64493945 None:intergenic 40.0%
TGACAATGATGTGGAACAGA+CGG + Chr2:64496678-64496697 None:intergenic 40.0%
TGCCATAACCTTATGCCTAT+CGG + Chr2:64494099-64494118 None:intergenic 40.0%
TTAAACTGCATCAGCCTCAA+AGG - Chr2:64496108-64496127 MsG0280010103.01.T01:CDS 40.0%
TTCAGGAAATTAAGCCAGGA+AGG + Chr2:64495878-64495897 None:intergenic 40.0%
TTGAGACGTTTGGAGGAAAA+GGG + Chr2:64496201-64496220 None:intergenic 40.0%
! AAAACCTTTTCCCCACTAAG+TGG + Chr2:64494540-64494559 None:intergenic 40.0%
! AAACCTTTTCCCCACTAAGT+GGG + Chr2:64494539-64494558 None:intergenic 40.0%
! AATTGGAAGCTTCCCTTTTG+TGG - Chr2:64494933-64494952 MsG0280010103.01.T01:intron 40.0%
! AGTGGAACTGATGATGAGAA+AGG + Chr2:64493742-64493761 None:intergenic 40.0%
! CTCAGAACACACGTTTTGTA+TGG + Chr2:64495480-64495499 None:intergenic 40.0%
! GTGAATCTTTGAGGAAGACT+TGG - Chr2:64494159-64494178 MsG0280010103.01.T01:intron 40.0%
! TATTGCTATTGCTTGCAGCT+TGG - Chr2:64495317-64495336 MsG0280010103.01.T01:intron 40.0%
!! AACCAGCATATTGGCTTCTT+TGG - Chr2:64496359-64496378 MsG0280010103.01.T01:five_prime_UTR 40.0%
!!! AAGCTACTGGATTGGCTTTT+AGG - Chr2:64495343-64495362 MsG0280010103.01.T01:intron 40.0%
!!! CCCTTTTGTGGTCTTGTTTT+TGG - Chr2:64494945-64494964 MsG0280010103.01.T01:intron 40.0%
AAACAACGCGAACGGATCTA+GGG + Chr2:64494031-64494050 None:intergenic 45.0%
ACCCTGAAAGAAATTGCACC+TGG + Chr2:64495651-64495670 None:intergenic 45.0%
ACCGGAACTGTAAGAAGTTC+CGG + Chr2:64493849-64493868 None:intergenic 45.0%
ACCGGAACTTCTTACAGTTC+CGG - Chr2:64493845-64493864 MsG0280010103.01.T01:intron 45.0%
ACTGTAAGAAGTTCCGGTTG+TGG + Chr2:64493843-64493862 None:intergenic 45.0%
AGCCAAAGAAGCCAATATGC+TGG + Chr2:64496364-64496383 None:intergenic 45.0%
AGGAGAGATGGATCAAATGG+AGG - Chr2:64494386-64494405 MsG0280010103.01.T01:CDS 45.0%
ATCAAATGGAGGATAGGCAG+AGG - Chr2:64494397-64494416 MsG0280010103.01.T01:CDS 45.0%
ATGAGAAAGGTGGTGACAGA+GGG + Chr2:64493729-64493748 None:intergenic 45.0%
CAGAATTGTGTTTGGTTGGC+TGG - Chr2:64496696-64496715 MsG0280010103.01.T01:five_prime_UTR 45.0%
CAGACTGGGTTTAGATCTGT+TGG - Chr2:64494131-64494150 MsG0280010103.01.T01:intron 45.0%
CATGCATCCTATGTACGTCT+GGG + Chr2:64495791-64495810 None:intergenic 45.0%
CCAGAAATGTTGTTGCCGAT+AGG - Chr2:64494081-64494100 MsG0280010103.01.T01:intron 45.0%
CCGTTGAAGTCCATTAGGAT+CGG + Chr2:64494192-64494211 None:intergenic 45.0%
CCTATCGGCAACAACATTTC+TGG + Chr2:64494084-64494103 None:intergenic 45.0%
CGAAGATGTCTGCGCTTAAA+AGG - Chr2:64495394-64495413 MsG0280010103.01.T01:intron 45.0%
CTATACTACGACAGCTACAG+CGG + Chr2:64493657-64493676 None:intergenic 45.0%
CTGGGTTTAGATCTGTTGGA+AGG - Chr2:64494135-64494154 MsG0280010103.01.T01:intron 45.0%
CTTGGAAGAAGCTACTGGAT+TGG - Chr2:64495335-64495354 MsG0280010103.01.T01:intron 45.0%
GCATTTGTCGGTATTCAGAC+TGG - Chr2:64494116-64494135 MsG0280010103.01.T01:intron 45.0%
GCCAGGTGCAATTTCTTTCA+GGG - Chr2:64495647-64495666 MsG0280010103.01.T01:intron 45.0%
GTAGCTGTCGTAGTATAGGT+GGG - Chr2:64493659-64493678 MsG0280010103.01.T01:CDS 45.0%
GTTGAGACGTTTGGAGGAAA+AGG + Chr2:64496202-64496221 None:intergenic 45.0%
TAGATCCGTTCGCGTTGTTT+GGG - Chr2:64494031-64494050 MsG0280010103.01.T01:intron 45.0%
TAGCTGTCGTAGTATAGGTG+GGG - Chr2:64493660-64493679 MsG0280010103.01.T01:CDS 45.0%
TCATGCATCCTATGTACGTC+TGG + Chr2:64495792-64495811 None:intergenic 45.0%
TCTCATTCCCAGACGTACAT+AGG - Chr2:64495781-64495800 MsG0280010103.01.T01:intron 45.0%
TGAAGTCCATTAGGATCGGA+AGG + Chr2:64494188-64494207 None:intergenic 45.0%
TGAGACGTTTGGAGGAAAAG+GGG + Chr2:64496200-64496219 None:intergenic 45.0%
TGCCGATAGGCATAAGGTTA+TGG - Chr2:64494094-64494113 MsG0280010103.01.T01:intron 45.0%
TGCTGATGTTGTGTCAAGCT+TGG - Chr2:64496487-64496506 MsG0280010103.01.T01:five_prime_UTR 45.0%
TGGTCGCTCTTAGGAATAAC+AGG - Chr2:64496507-64496526 MsG0280010103.01.T01:five_prime_UTR 45.0%
TGGTTTCCTTCCGATCCTAA+TGG - Chr2:64494179-64494198 MsG0280010103.01.T01:intron 45.0%
TGTAGCTGTCGTAGTATAGG+TGG - Chr2:64493658-64493677 MsG0280010103.01.T01:CDS 45.0%
TGTTGTTGCCGATAGGCATA+AGG - Chr2:64494088-64494107 MsG0280010103.01.T01:intron 45.0%
TTAGAGAGAGTTAGGGTAGC+AGG - Chr2:64494299-64494318 MsG0280010103.01.T01:intron 45.0%
TTCCATTCCTCAACCACAAC+CGG - Chr2:64493827-64493846 MsG0280010103.01.T01:intron 45.0%
! ACGTGGGTTGAAGAATGGTT+TGG + Chr2:64493892-64493911 None:intergenic 45.0%
! ATTTTACCGGCAACTCTTGC+AGG - Chr2:64496393-64496412 MsG0280010103.01.T01:five_prime_UTR 45.0%
! CACTGCTAGCTACTTTGCAT+AGG + Chr2:64494984-64495003 None:intergenic 45.0%
! GGAACTGATGATGAGAAAGG+TGG + Chr2:64493739-64493758 None:intergenic 45.0%
! GGGTTGAAGAATGGTTTGGA+AGG + Chr2:64493888-64493907 None:intergenic 45.0%
! TTGGAAGGCGTGAATCTTTG+AGG - Chr2:64494150-64494169 MsG0280010103.01.T01:intron 45.0%
!! ATGGTTTGGAAGGCATTGTG+AGG + Chr2:64493878-64493897 None:intergenic 45.0%
!! CCGATCCTAATGGACTTCAA+CGG - Chr2:64494189-64494208 MsG0280010103.01.T01:intron 45.0%
!!! GGCATTGTGAGGTTTTAGAC+CGG + Chr2:64493867-64493886 None:intergenic 45.0%
AAAGGAGGAGGAAGGTGATG+AGG + Chr2:64493953-64493972 None:intergenic 50.0%
AGAAGTTCCGGTTGTGGTTG+AGG + Chr2:64493837-64493856 None:intergenic 50.0%
CAAACAACGCGAACGGATCT+AGG + Chr2:64494032-64494051 None:intergenic 50.0%
CGATGAGGAGTAAAAGGAGG+AGG + Chr2:64493965-64493984 None:intergenic 50.0%
CGCTGTAGCTGTCGTAGTAT+AGG - Chr2:64493655-64493674 MsG0280010103.01.T01:CDS 50.0%
CTAGATCCGTTCGCGTTGTT+TGG - Chr2:64494030-64494049 MsG0280010103.01.T01:intron 50.0%
CTCATACCTGCAAGAGTTGC+CGG + Chr2:64496402-64496421 None:intergenic 50.0%
GAGAGTTAGGGTAGCAGGTA+TGG - Chr2:64494304-64494323 MsG0280010103.01.T01:intron 50.0%
GAGGAGTAAAAGGAGGAGGA+AGG + Chr2:64493961-64493980 None:intergenic 50.0%
GATGAGAAAGGTGGTGACAG+AGG + Chr2:64493730-64493749 None:intergenic 50.0%
GGCCAGGTGCAATTTCTTTC+AGG - Chr2:64495646-64495665 MsG0280010103.01.T01:intron 50.0%
GTGATCCCAAACAACGCGAA+CGG + Chr2:64494039-64494058 None:intergenic 50.0%
TGAGAATCTGCGAAGGGGAA+TGG + Chr2:64493919-64493938 None:intergenic 50.0%
TGCAGCTTGGAAGAAGCTAC+TGG - Chr2:64495330-64495349 MsG0280010103.01.T01:intron 50.0%
TGTCAAGCTTGGTCGCTCTT+AGG - Chr2:64496498-64496517 MsG0280010103.01.T01:five_prime_UTR 50.0%
TTCCGGTTGTGGTTGAGGAA+TGG + Chr2:64493832-64493851 None:intergenic 50.0%
! GTGTGACGTGGGTTGAAGAA+TGG + Chr2:64493897-64493916 None:intergenic 50.0%
! GTTCGCGTTGTTTGGGATCA+CGG - Chr2:64494038-64494057 MsG0280010103.01.T01:intron 50.0%
!! AACAACATTTCTGGCGCCGT+TGG + Chr2:64494075-64494094 None:intergenic 50.0%
!! TTTTCCCCACTAAGTGGGCT+CGG + Chr2:64494534-64494553 None:intergenic 50.0%
ATGTAGCCGAGCCCACTTAG+TGG - Chr2:64494525-64494544 MsG0280010103.01.T01:intron 55.0%
GAAGGGGAATGGTGTGACGT+GGG + Chr2:64493908-64493927 None:intergenic 55.0%
GAGCCCACTTAGTGGGGAAA+AGG - Chr2:64494533-64494552 MsG0280010103.01.T01:CDS 55.0%
TGTAGCCGAGCCCACTTAGT+GGG - Chr2:64494526-64494545 MsG0280010103.01.T01:intron 55.0%
! ACTAAGTGGGCTCGGCTACA+TGG + Chr2:64494526-64494545 None:intergenic 55.0%
!! ATTTCTGGCGCCGTTGGTGA+CGG + Chr2:64494069-64494088 None:intergenic 55.0%
CGAAGGGGAATGGTGTGACG+TGG + Chr2:64493909-64493928 None:intergenic 60.0%
GGAGGAGGAAGGTGATGAGG+AGG + Chr2:64493950-64493969 None:intergenic 60.0%
GTAGCCGAGCCCACTTAGTG+GGG - Chr2:64494527-64494546 MsG0280010103.01.T01:intron 60.0%
CACGGCAACGCCGTCACCAA+CGG - Chr2:64494056-64494075 MsG0280010103.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 64493455 64496725 64493455 ID=MsG0280010103.01;Name=MsG0280010103.01
Chr2 mRNA 64493455 64496725 64493455 ID=MsG0280010103.01.T01;Parent=MsG0280010103.01;Name=MsG0280010103.01.T01;_AED=0.39;_eAED=0.42;_QI=427|0.8|0.83|1|1|1|6|0|278
Chr2 exon 64493455 64493512 64493455 ID=MsG0280010103.01.T01:exon:8211;Parent=MsG0280010103.01.T01
Chr2 exon 64493652 64493765 64493652 ID=MsG0280010103.01.T01:exon:8210;Parent=MsG0280010103.01.T01
Chr2 exon 64494332 64494431 64494332 ID=MsG0280010103.01.T01:exon:8209;Parent=MsG0280010103.01.T01
Chr2 exon 64494529 64494611 64494529 ID=MsG0280010103.01.T01:exon:8208;Parent=MsG0280010103.01.T01
Chr2 exon 64494693 64494845 64494693 ID=MsG0280010103.01.T01:exon:8207;Parent=MsG0280010103.01.T01
Chr2 exon 64495970 64496725 64495970 ID=MsG0280010103.01.T01:exon:8206;Parent=MsG0280010103.01.T01
Chr2 five_prime_UTR 64496299 64496725 64496299 ID=MsG0280010103.01.T01:five_prime_utr;Parent=MsG0280010103.01.T01
Chr2 CDS 64495970 64496298 64495970 ID=MsG0280010103.01.T01:cds;Parent=MsG0280010103.01.T01
Chr2 CDS 64494693 64494845 64494693 ID=MsG0280010103.01.T01:cds;Parent=MsG0280010103.01.T01
Chr2 CDS 64494529 64494611 64494529 ID=MsG0280010103.01.T01:cds;Parent=MsG0280010103.01.T01
Chr2 CDS 64494332 64494431 64494332 ID=MsG0280010103.01.T01:cds;Parent=MsG0280010103.01.T01
Chr2 CDS 64493652 64493765 64493652 ID=MsG0280010103.01.T01:cds;Parent=MsG0280010103.01.T01
Chr2 CDS 64493455 64493512 64493455 ID=MsG0280010103.01.T01:cds;Parent=MsG0280010103.01.T01
Gene Sequence

>MsG0280010103.01.T01

ATGCCTTCCAAACCATTCTTCAACCCACGTCACACCATTCCCCTTCGCAGATTCTCATTCTTCATCCTCCTCATCACCTTCCTCCTCCTTTTACTCCTCATCGTTTTTCTTAAACCGTTTCAAAACAATCGCTGTCTCAACACTAACCCTAGATCCGTTCGCGTTGTTTGGGATCACGGCAACGCCGTCACCAACGGCGCCAGAAATGTTGTTGCCGATAGGCATAAGGTTATGGCATTTGTCGGTATTCAGACTGGGTTTAGATCTGTTGGAAGGCGTGAATCTTTGAGGAAGACTTGGTTTCCTTCCGATCCTAATGGACTTCAACGCTTGGAAGAAGCTACTGGATTGGCTTTTAGGTTTGTTATTGGTAGAACGAGTGATAGATCGAAGATGTCTGCGCTTAAAAGGGAAATATCTGAATATGACGATTTTATTCAATTGGATATTGAAGAGGAGTACAGTAAGCTCCCATACAAAACGCTGGCTTTCTTTAAAGCTGCTTATGCTCTTTTTGAAGCCGAATTTTATGTCAAAGCTGACGATGACATATATTTAAGGCCAGATCGTCTTTCATTACTGCTTGCAAAAGAGAGATCTCATTCCCAGACGTACATAGGATGCATGAAAAAGGGCCCTGTTTTCACTGATCCGAAACTCAAATGGTATGAGCCATTATCTAATTTGCTTGGAAAGGAGTATTTTCTTCATGCTTATGGTCCTATATATGCTCTTTCTGCTGATGTTGTGTCAAGCTTGGTCGCTCTTAGGAATAACAGTCAGATACCGTCTGTTCCACATCATTGTCAGAATTGTGTTTGGTTGGCTGGTCTGTAG
Protein sequence

>MsG0280010103.01.T01

MPSKPFFNPRHTIPLRRFSFFILLITFLLLLLLIVFLKPFQNNRCLNTNPRSVRVVWDHGNAVTNGARNVVADRHKVMAFVGIQTGFRSVGRRESLRKTWFPSDPNGLQRLEEATGLAFRFVIGRTSDRSKMSALKREISEYDDFIQLDIEEEYSKLPYKTLAFFKAAYALFEAEFYVKADDDIYLRPDRLSLLLAKERSHSQTYIGCMKKGPVFTDPKLKWYEPLSNLLGKEYFLHAYGPIYALSADVVSSLVALRNNSQIPSVPHHCQNCVWLAGL*