AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006116.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006116.01.T01 MTR_1g115135 97.844 371 6 1 1 371 1 369 0.0 740
MsG0180006116.01.T01 MTR_1g115135 93.429 350 19 2 1 350 1 346 0.0 665
MsG0180006116.01.T01 MTR_8g020310 64.822 253 86 1 107 359 36 285 2.10e-119 347
MsG0180006116.01.T01 MTR_1g007830 31.593 383 225 10 3 370 61 421 3.42e-50 174
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006116.01.T01 AT5G08580 59.296 398 128 5 1 371 1 391 8.53e-171 482
MsG0180006116.01.T01 AT5G08580 59.296 398 128 5 1 371 1 391 8.53e-171 482
MsG0180006116.01.T01 AT4G27790 33.875 369 213 10 3 368 1 341 3.63e-60 197
MsG0180006116.01.T01 AT4G27790 31.845 336 199 9 3 335 1 309 2.84e-50 171

Find 122 sgRNAs with CRISPR-Local

Find 528 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAGGATCCACATCGATTT+TGG 0.116408 1:-100307129 None:intergenic
ATTGAACTACTGCCTATAAT+TGG 0.178697 1:+100309722 MsG0180006116.01.T01:CDS
CTGAGACTAGCAACCTAATA+AGG 0.225455 1:-100313094 None:intergenic
TTCATGAAGTCTTCCCATTC+AGG 0.251226 1:-100307041 None:intergenic
CTATTCTTTCAATTTGAATC+TGG 0.285986 1:+100306735 MsG0180006116.01.T01:five_prime_UTR
TTTCCATGGGCTCTTTGATT+TGG 0.307800 1:+100309475 MsG0180006116.01.T01:CDS
TCTGGAAATGCAATGGGTTT+AGG 0.309864 1:+100306753 MsG0180006116.01.T01:exon
ATTCATATTTATTTGCTGAT+AGG 0.327533 1:+100313162 MsG0180006116.01.T01:three_prime_UTR
TTGATGTTTCGGCCCTTATT+AGG 0.328140 1:+100313081 MsG0180006116.01.T01:three_prime_UTR
TGGATCATCTGGAGGGTAAT+AGG 0.343782 1:+100313205 MsG0180006116.01.T01:three_prime_UTR
TTGACCATCACGTTCCTAGA+TGG 0.354686 1:+100313360 MsG0180006116.01.T01:three_prime_UTR
AATTGGTCAATATAGTTATA+TGG 0.374054 1:-100313338 None:intergenic
GGATGGAGTTTCCCAATTAT+AGG 0.374598 1:-100309734 None:intergenic
TTCGCGGTGGCGTTCGAGTT+CGG 0.388491 1:-100306964 None:intergenic
TCATCGTTCTCAAAGAGAAA+TGG 0.388892 1:+100307217 MsG0180006116.01.T01:CDS
GGAGTTGCACCTGGATCATC+TGG 0.389552 1:+100313194 MsG0180006116.01.T01:three_prime_UTR
CCATCATTCGGATAATTCAT+TGG 0.390327 1:+100309532 MsG0180006116.01.T01:CDS
AGCTTCAACAATGGTTGTGC+AGG 0.394291 1:+100308189 MsG0180006116.01.T01:CDS
CTTACAAAGCATTTATAAGA+AGG 0.394446 1:+100313424 MsG0180006116.01.T01:three_prime_UTR
TTTGTGCTGTTGCTATCAGC+TGG 0.406330 1:-100308167 None:intergenic
CTGAGTATGATCCTCCTAGT+TGG 0.406429 1:+100307279 MsG0180006116.01.T01:CDS
GGAAGAGTGGTGGTTGTTGA+AGG 0.407476 1:-100306838 None:intergenic
GTGTTACTCTTAGTTCTCAT+TGG 0.409060 1:+100313303 MsG0180006116.01.T01:three_prime_UTR
AGTTCCGATAAATTCATGTT+AGG 0.409707 1:+100312904 MsG0180006116.01.T01:exon
GGTTGTGCAGGGAGGAAATC+AGG 0.412000 1:+100308201 MsG0180006116.01.T01:CDS
CTCACCTAACATGAATTTAT+CGG 0.418264 1:-100312908 None:intergenic
TAGGAACGTGATGGTCAAAT+TGG 0.424381 1:-100313355 None:intergenic
GGACAGGTTGGTGAGAAGAA+TGG 0.437950 1:-100306923 None:intergenic
GACAGGTTGGTGAGAAGAAT+GGG 0.438518 1:-100306922 None:intergenic
TTTGAATCTGGAAATGCAAT+GGG 0.442858 1:+100306747 MsG0180006116.01.T01:exon
GAAGTCTTCCCATTCAGGTT+GGG 0.442930 1:-100307036 None:intergenic
TTGCTAGTCTCAGTCATGGT+GGG 0.448293 1:+100313104 MsG0180006116.01.T01:three_prime_UTR
CTCACGAATCCCAACCTGAA+TGG 0.450548 1:+100307027 MsG0180006116.01.T01:CDS
TCAGGTTGGGATTCGTGAGC+GGG 0.450871 1:-100307023 None:intergenic
TTGAACTACTGCCTATAATT+GGG 0.454087 1:+100309723 MsG0180006116.01.T01:CDS
CCAATGAATTATCCGAATGA+TGG 0.460938 1:-100309532 None:intergenic
ATTCGTGAGCGGGAGCGTGC+TGG 0.465111 1:-100307013 None:intergenic
ATAAATCTTATAATCCATCT+AGG 0.466777 1:-100313374 None:intergenic
GTTTGAGGCGGCGGTGACGG+TGG 0.468489 1:-100306860 None:intergenic
TCACGAATCCCAACCTGAAT+GGG 0.471276 1:+100307028 MsG0180006116.01.T01:CDS
ACGAGAGGGTCGAAGGGGAC+AGG 0.472150 1:-100306939 None:intergenic
GGAGTTTGAGGCGGCGGTGA+CGG 0.475675 1:-100306863 None:intergenic
TGAGTATGATCCTCCTAGTT+GGG 0.475881 1:+100307280 MsG0180006116.01.T01:CDS
ATTTGAATCTGGAAATGCAA+TGG 0.480736 1:+100306746 MsG0180006116.01.T01:exon
TATCAGCAAATAAATATGAA+TGG 0.482165 1:-100313160 None:intergenic
AGAAGGTTCGAGAGTGAAGT+TGG 0.486483 1:-100306889 None:intergenic
GAAAATACCCGTCACCATCT+TGG 0.486734 1:-100309589 None:intergenic
TAAATACACACTATGATTGA+AGG 0.493061 1:+100306655 None:intergenic
CCTAGTTGGGTTAAATCTGC+TGG 0.493560 1:+100307293 MsG0180006116.01.T01:CDS
TCACAATGACTCCCATCATT+CGG 0.500757 1:+100309520 MsG0180006116.01.T01:CDS
TGAGACTAGCAACCTAATAA+GGG 0.501886 1:-100313093 None:intergenic
TTCGGCAACGAGAGGGTCGA+AGG 0.503862 1:-100306946 None:intergenic
TTTGAGGCGGCGGTGACGGT+GGG 0.504991 1:-100306859 None:intergenic
TGAAGTTGGAACGGAGTTTG+AGG 0.509710 1:-100306875 None:intergenic
GAATTTATCGGAACTCATCA+TGG 0.509978 1:-100312896 None:intergenic
CATAGTAATGCTCGGACGGA+TGG 0.511236 1:-100309751 None:intergenic
TTTGCTGATAGGATCCATCA+TGG 0.513333 1:+100313173 MsG0180006116.01.T01:three_prime_UTR
TGAAGGGAGAGTGTGAAGAG+AGG 0.513770 1:-100306821 None:intergenic
ATCCATCATGGAGTTGCACC+TGG 0.514538 1:+100313185 MsG0180006116.01.T01:three_prime_UTR
TAAGGATTCTCAATCATCTC+AGG 0.514900 1:-100312822 None:intergenic
CTTCATGATAAGAATCATGA+TGG 0.518005 1:+100307242 MsG0180006116.01.T01:CDS
TGGAACGGAGTTTGAGGCGG+CGG 0.518813 1:-100306869 None:intergenic
ATAGCACTATAAAATACATA+AGG 0.521974 1:-100312840 None:intergenic
GAGTAACACTTAATTAATGA+TGG 0.522334 1:-100313289 None:intergenic
TGCTAGTCTCAGTCATGGTG+GGG 0.522402 1:+100313105 MsG0180006116.01.T01:three_prime_UTR
CCAGCAGATTTAACCCAACT+AGG 0.523932 1:-100307293 None:intergenic
GTTCCCATTGTTTGTCTTCG+CGG 0.528890 1:-100306980 None:intergenic
GGCGGTGACGGTGGGAAGAG+TGG 0.529859 1:-100306851 None:intergenic
CCACCGCGAAGACAAACAAT+GGG 0.530716 1:+100306977 MsG0180006116.01.T01:CDS
TGAAGTCTTCCCATTCAGGT+TGG 0.530720 1:-100307037 None:intergenic
TTGCTTTGCATAGTAATGCT+CGG 0.531273 1:-100309759 None:intergenic
AAAGAGACTCAGACAGAGAT+GGG 0.535960 1:+100309432 MsG0180006116.01.T01:CDS
CAATGAATTATCCGAATGAT+GGG 0.540410 1:-100309531 None:intergenic
TTGGTGAGAAGAATGGGAAC+GGG 0.541327 1:-100306916 None:intergenic
TTTAATGCATCTGATGCAGA+TGG 0.543757 1:+100307988 MsG0180006116.01.T01:CDS
GAAAGAGACTCAGACAGAGA+TGG 0.546286 1:+100309431 MsG0180006116.01.T01:CDS
AGATCAACAAAATCATCAGC+AGG 0.550144 1:-100307146 None:intergenic
GACAAGGAGTCTGAATTTGA+AGG 0.553959 1:+100313040 MsG0180006116.01.T01:three_prime_UTR
AGCTTGACCAAGATGGTGAC+GGG 0.555638 1:+100309582 MsG0180006116.01.T01:CDS
TTACCAAATCAAAGAGCCCA+TGG 0.557051 1:-100309478 None:intergenic
ATCAGAATATATCATTTCAC+AGG 0.557494 1:+100309784 MsG0180006116.01.T01:CDS
TAGGTTGCTAGTCTCAGTCA+TGG 0.561221 1:+100313100 MsG0180006116.01.T01:three_prime_UTR
GTTCGAGTTCGGCAACGAGA+GGG 0.561637 1:-100306953 None:intergenic
TGAATTTGAAGGTTATGAGA+TGG 0.562166 1:+100313051 MsG0180006116.01.T01:three_prime_UTR
AGACTCAGACAGAGATGGGA+AGG 0.562489 1:+100309436 MsG0180006116.01.T01:CDS
ATCCAGGTGCAACTCCATGA+TGG 0.562634 1:-100313187 None:intergenic
TTGTGCTGTTGCTATCAGCT+GGG 0.563487 1:-100308166 None:intergenic
TATTACCCTCCAGATGATCC+AGG 0.565032 1:-100313203 None:intergenic
TTGGCTATGATATGGGTTGG+TGG 0.566373 1:+100307953 MsG0180006116.01.T01:CDS
TTCAGGTTGGGATTCGTGAG+CGG 0.568927 1:-100307024 None:intergenic
GCCACCGCGAAGACAAACAA+TGG 0.573423 1:+100306976 MsG0180006116.01.T01:CDS
TAAGCAAAATGAGTGTGACT+TGG 0.577158 1:-100313405 None:intergenic
CGTTCGAGTTCGGCAACGAG+AGG 0.583240 1:-100306954 None:intergenic
CAGCTTGACCAAGATGGTGA+CGG 0.583818 1:+100309581 MsG0180006116.01.T01:CDS
GAAGAGTGGTGGTTGTTGAA+GGG 0.587523 1:-100306837 None:intergenic
GTTGCTAGTCTCAGTCATGG+TGG 0.588895 1:+100313103 MsG0180006116.01.T01:three_prime_UTR
TTTGCTCAGCTTGACCAAGA+TGG 0.591931 1:+100309575 MsG0180006116.01.T01:CDS
ATCTTCATGAGTTGACTATG+TGG 0.597497 1:+100307165 MsG0180006116.01.T01:CDS
TGAAGGTGAGTTGAATTGAA+AGG 0.598470 1:+100306672 MsG0180006116.01.T01:five_prime_UTR
TCGGCAACGAGAGGGTCGAA+GGG 0.600852 1:-100306945 None:intergenic
GTTGGTGAGAAGAATGGGAA+CGG 0.602731 1:-100306917 None:intergenic
TTTGCATAGTAATGCTCGGA+CGG 0.602855 1:-100309755 None:intergenic
GAGGGTCGAAGGGGACAGGT+TGG 0.604316 1:-100306935 None:intergenic
TAATCCATCTAGGAACGTGA+TGG 0.609715 1:-100313364 None:intergenic
CCCATTGTTTGTCTTCGCGG+TGG 0.609991 1:-100306977 None:intergenic
GTTCGAGAGTGAAGTTGGAA+CGG 0.611091 1:-100306884 None:intergenic
AAATGCAATGGGTTTAGGAT+CGG 0.611955 1:+100306758 MsG0180006116.01.T01:exon
GAATGGGAACGGGAATGAGA+AGG 0.615322 1:-100306906 None:intergenic
GGTGACGGTGGGAAGAGTGG+TGG 0.620742 1:-100306848 None:intergenic
GCTTCAACAATGGTTGTGCA+GGG 0.627087 1:+100308190 MsG0180006116.01.T01:CDS
AAGCAAAATGAGTGTGACTT+GGG 0.628858 1:-100313404 None:intergenic
ACAGCACAAAGCTTCAACAA+TGG 0.631286 1:+100308180 MsG0180006116.01.T01:CDS
CAATCATCTCAGGCAAAGTG+AGG 0.632579 1:-100312812 None:intergenic
GTTGCACCTGGATCATCTGG+AGG 0.641210 1:+100313197 MsG0180006116.01.T01:three_prime_UTR
AGTTGGAACGGAGTTTGAGG+CGG 0.642114 1:-100306872 None:intergenic
GCATCTGATGCAGATGGAGA+TGG 0.642234 1:+100307994 MsG0180006116.01.T01:CDS
CGGCAACGAGAGGGTCGAAG+GGG 0.666729 1:-100306944 None:intergenic
TTGCACCTGGATCATCTGGA+GGG 0.671751 1:+100313198 MsG0180006116.01.T01:three_prime_UTR
GCAGATTTAACCCAACTAGG+AGG 0.674034 1:-100307290 None:intergenic
TCTTCAACAAGCTCATAGAG+AGG 0.679859 1:+100307190 MsG0180006116.01.T01:CDS
TTGAAACAATATCAGTGACA+AGG 0.683430 1:+100313024 MsG0180006116.01.T01:three_prime_UTR
TCAACAATGGTTGTGCAGGG+AGG 0.695959 1:+100308193 MsG0180006116.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAGAAAAGT+AGG + Chr1:100312000-100312019 MsG0180006116.01.T01:intron 10.0%
!!! AATATTGAAATAAATTTTGT+AGG + Chr1:100309246-100309265 MsG0180006116.01.T01:intron 10.0%
!! AACTGAAATGTATAATATAA+AGG + Chr1:100310003-100310022 MsG0180006116.01.T01:intron 15.0%
!! AAGTTAGAAAATTTATTCTT+TGG + Chr1:100309022-100309041 MsG0180006116.01.T01:intron 15.0%
!! ATATGTATTACAAATAAATG+GGG + Chr1:100308859-100308878 MsG0180006116.01.T01:intron 15.0%
!! CAAATTATTTAGACTAATTT+GGG - Chr1:100311043-100311062 None:intergenic 15.0%
!! CATATGTATTACAAATAAAT+GGG + Chr1:100308858-100308877 MsG0180006116.01.T01:intron 15.0%
!! CTTATAAGAAAAAAATATCT+GGG - Chr1:100313456-100313475 None:intergenic 15.0%
!! TAGATAAATAAATAGATGAA+TGG + Chr1:100310440-100310459 MsG0180006116.01.T01:intron 15.0%
!! TCAAATTATTTAGACTAATT+TGG - Chr1:100311044-100311063 None:intergenic 15.0%
!! TCATATGTATTACAAATAAA+TGG + Chr1:100308857-100308876 MsG0180006116.01.T01:intron 15.0%
!! TCTTATAAGAAAAAAATATC+TGG - Chr1:100313457-100313476 None:intergenic 15.0%
!! TTATAAGAAAAAAATATCTG+GGG - Chr1:100313455-100313474 None:intergenic 15.0%
!! TTTAATTGTTATAACTTCTT+GGG + Chr1:100312170-100312189 MsG0180006116.01.T01:intron 15.0%
!! TTTCTCTATAAAGAAATAAA+AGG - Chr1:100309415-100309434 None:intergenic 15.0%
!!! TTTCCTTTTATAATATCTTA+GGG + Chr1:100312491-100312510 MsG0180006116.01.T01:intron 15.0%
!!! TTTTAATTGTTATAACTTCT+TGG + Chr1:100312169-100312188 MsG0180006116.01.T01:intron 15.0%
!!! TTTTTAAGAATATGATATAC+TGG + Chr1:100312386-100312405 MsG0180006116.01.T01:intron 15.0%
!! AAATAAAAACAGAGTAAAAG+TGG + Chr1:100310244-100310263 MsG0180006116.01.T01:intron 20.0%
!! AAATAAATAGATGAATGGTA+GGG + Chr1:100310445-100310464 MsG0180006116.01.T01:intron 20.0%
!! AACTAATAAATGTACTATAC+AGG - Chr1:100308333-100308352 None:intergenic 20.0%
!! AAGAAAAATAGATTAGATAG+AGG + Chr1:100307616-100307635 MsG0180006116.01.T01:intron 20.0%
!! AATTGGAGAAAAAGAATATA+TGG - Chr1:100312221-100312240 None:intergenic 20.0%
!! AATTGGTCAATATAGTTATA+TGG - Chr1:100313341-100313360 None:intergenic 20.0%
!! ACTAATAAATGTACTATACA+GGG - Chr1:100308332-100308351 None:intergenic 20.0%
!! AGTACATTAATGATGAAAAA+AGG - Chr1:100309614-100309633 None:intergenic 20.0%
!! AGTCTAAATAATTTGATTCA+CGG + Chr1:100311048-100311067 MsG0180006116.01.T01:intron 20.0%
!! ATAAATCTTATAATCCATCT+AGG - Chr1:100313377-100313396 None:intergenic 20.0%
!! ATAGCACTATAAAATACATA+AGG - Chr1:100312843-100312862 None:intergenic 20.0%
!! ATGAATTACCATTTCATATT+TGG + Chr1:100308508-100308527 MsG0180006116.01.T01:intron 20.0%
!! ATGTATTCACAATCTTAAAT+AGG + Chr1:100308596-100308615 MsG0180006116.01.T01:intron 20.0%
!! CCTGTTATAAAATTATACAA+TGG - Chr1:100312770-100312789 None:intergenic 20.0%
!! GATATTATAAAAGGAAACAT+TGG - Chr1:100312488-100312507 None:intergenic 20.0%
!! GATGATAAAATCAATTTACA+AGG - Chr1:100312199-100312218 None:intergenic 20.0%
!! TAAATAAATAGATGAATGGT+AGG + Chr1:100310444-100310463 MsG0180006116.01.T01:intron 20.0%
!! TAATTGACAATATAGTTGTT+CGG + Chr1:100308830-100308849 MsG0180006116.01.T01:intron 20.0%
!! TATCAGCAAATAAATATGAA+TGG - Chr1:100313163-100313182 None:intergenic 20.0%
!! TATGAATTGCTAAATATTGT+AGG + Chr1:100312525-100312544 MsG0180006116.01.T01:intron 20.0%
!! TATTAGATCTTAGAAAAAGT+AGG + Chr1:100310478-100310497 MsG0180006116.01.T01:intron 20.0%
!! TGACTATTTCAAATTAGAAA+TGG + Chr1:100310184-100310203 MsG0180006116.01.T01:intron 20.0%
!! TTAATTGTTATAACTTCTTG+GGG + Chr1:100312171-100312190 MsG0180006116.01.T01:intron 20.0%
!! TTCTTAAAAACAATTTCTCT+AGG - Chr1:100312376-100312395 None:intergenic 20.0%
!! TTTCTTAATAGTTTCTCTTA+TGG - Chr1:100307680-100307699 None:intergenic 20.0%
!!! ACTATCAACAGTAATTATTT+TGG - Chr1:100310393-100310412 None:intergenic 20.0%
!!! ATTCATATTTATTTGCTGAT+AGG + Chr1:100313162-100313181 MsG0180006116.01.T01:three_prime_UTR 20.0%
!!! ATTCTGAAATAATTCAGAAT+GGG - Chr1:100312098-100312117 None:intergenic 20.0%
!!! ATTTCCCATATTTCTAATAT+TGG - Chr1:100309281-100309300 None:intergenic 20.0%
!!! CCATTGTATAATTTTATAAC+AGG + Chr1:100312767-100312786 MsG0180006116.01.T01:intron 20.0%
!!! CTTTTACTCTGTTTTTATTT+TGG - Chr1:100310244-100310263 None:intergenic 20.0%
!!! GTTTCCTTTTATAATATCTT+AGG + Chr1:100312490-100312509 MsG0180006116.01.T01:intron 20.0%
!!! TATTCTTTTTCTCCAATTTA+CGG + Chr1:100312223-100312242 MsG0180006116.01.T01:intron 20.0%
!!! TATTTTATTGGAAGGATAAA+GGG + Chr1:100310360-100310379 MsG0180006116.01.T01:intron 20.0%
!!! TTTATTTTACTGAAGTGAAT+GGG + Chr1:100309324-100309343 MsG0180006116.01.T01:intron 20.0%
!!! TTTCCCATATTTCTAATATT+GGG - Chr1:100309280-100309299 None:intergenic 20.0%
!!! TTTTATTTTACTGAAGTGAA+TGG + Chr1:100309323-100309342 MsG0180006116.01.T01:intron 20.0%
!!! TTTTCAGATAAAGAATCTTT+TGG + Chr1:100307934-100307953 MsG0180006116.01.T01:intron 20.0%
! AAAATTAGTTCAATGCATCT+AGG - Chr1:100312618-100312637 None:intergenic 25.0%
! AAGAATAAGTGATTTCTGTT+TGG + Chr1:100308277-100308296 MsG0180006116.01.T01:intron 25.0%
! ACCAACTTATTTGTAATAGT+GGG - Chr1:100309153-100309172 None:intergenic 25.0%
! AGATCTAGATATTATTGAGT+TGG + Chr1:100307699-100307718 MsG0180006116.01.T01:intron 25.0%
! ATATATCATTTCACAGGTAT+TGG + Chr1:100309790-100309809 MsG0180006116.01.T01:intron 25.0%
! ATATGCATTACAAAATACGT+GGG + Chr1:100308637-100308656 MsG0180006116.01.T01:intron 25.0%
! ATCAGAATATATCATTTCAC+AGG + Chr1:100309784-100309803 MsG0180006116.01.T01:CDS 25.0%
! ATCTTAGAAAAAGTAGGATT+AGG + Chr1:100310484-100310503 MsG0180006116.01.T01:intron 25.0%
! ATGTGAAGTCATATGAATAT+AGG + Chr1:100309869-100309888 MsG0180006116.01.T01:intron 25.0%
! ATTCAATTACTTGCTCAAAA+AGG - Chr1:100310315-100310334 None:intergenic 25.0%
! ATTTATTGCTTATACCATAC+TGG + Chr1:100311942-100311961 MsG0180006116.01.T01:intron 25.0%
! CTAATAAATGTACTATACAG+GGG - Chr1:100308331-100308350 None:intergenic 25.0%
! CTATCAAATCACAATTCAAA+CGG + Chr1:100309911-100309930 MsG0180006116.01.T01:intron 25.0%
! CTATTCTTTCAATTTGAATC+TGG + Chr1:100306735-100306754 MsG0180006116.01.T01:five_prime_UTR 25.0%
! GAGTAACACTTAATTAATGA+TGG - Chr1:100313292-100313311 None:intergenic 25.0%
! GCAGTATATAAATAACAAGT+GGG - Chr1:100308782-100308801 None:intergenic 25.0%
! TAAATATCATAAAGTACAGC+TGG - Chr1:100311927-100311946 None:intergenic 25.0%
! TAATTGTTATAACTTCTTGG+GGG + Chr1:100312172-100312191 MsG0180006116.01.T01:intron 25.0%
! TACCAACTTATTTGTAATAG+TGG - Chr1:100309154-100309173 None:intergenic 25.0%
! TCTTAGAAAAAGTAGGATTA+GGG + Chr1:100310485-100310504 MsG0180006116.01.T01:intron 25.0%
! TCTTCAAAATATGAATCTGT+CGG + Chr1:100312063-100312082 MsG0180006116.01.T01:intron 25.0%
! TGAAATGGTAATTCATTATC+AGG - Chr1:100308504-100308523 None:intergenic 25.0%
! TGGTTTATGATAGAACATTA+TGG + Chr1:100307731-100307750 MsG0180006116.01.T01:intron 25.0%
! TTCAATTACTTGCTCAAAAA+GGG - Chr1:100310314-100310333 None:intergenic 25.0%
! TTCTTGTCATTCAATAAACT+CGG - Chr1:100311503-100311522 None:intergenic 25.0%
!! AACTTCAAAGAATTTTTCCA+TGG + Chr1:100309461-100309480 MsG0180006116.01.T01:CDS 25.0%
!! ACTTCAAAGAATTTTTCCAT+GGG + Chr1:100309462-100309481 MsG0180006116.01.T01:CDS 25.0%
!! AGATCTTGGAAATCATTTTA+AGG + Chr1:100310548-100310567 MsG0180006116.01.T01:intron 25.0%
!! ATTGTCAATTAGTTGCTATT+TGG - Chr1:100308821-100308840 None:intergenic 25.0%
!! ATTTGATAGCTATAGAACTA+TGG - Chr1:100309900-100309919 None:intergenic 25.0%
!! CTTACAAAGCATTTATAAGA+AGG + Chr1:100313424-100313443 MsG0180006116.01.T01:three_prime_UTR 25.0%
!! GTATTTTATTGGAAGGATAA+AGG + Chr1:100310359-100310378 MsG0180006116.01.T01:intron 25.0%
!! TTTGATAGCTATAGAACTAT+GGG - Chr1:100309899-100309918 None:intergenic 25.0%
!!! AGTTTCTCTTATGGTTTTTT+AGG - Chr1:100307671-100307690 None:intergenic 25.0%
!!! ATTACTGTTGATAGTTACAA+TGG + Chr1:100310398-100310417 MsG0180006116.01.T01:intron 25.0%
!!! CATATTTTGAAGAGATCAAA+GGG - Chr1:100312056-100312075 None:intergenic 25.0%
!!! CATTCTGAAATAATTCAGAA+TGG - Chr1:100312099-100312118 None:intergenic 25.0%
!!! GAAATCATTTTAAGGAATAG+GGG + Chr1:100310556-100310575 MsG0180006116.01.T01:intron 25.0%
!!! GGAAATCATTTTAAGGAATA+GGG + Chr1:100310555-100310574 MsG0180006116.01.T01:intron 25.0%
!!! TAAGAGTGTAAAGTATTGTA+TGG - Chr1:100309822-100309841 None:intergenic 25.0%
!!! TAGATATGATGATGTTTTGT+TGG + Chr1:100307440-100307459 MsG0180006116.01.T01:intron 25.0%
!!! TATTGAGTTGGATCAAAATA+TGG + Chr1:100307711-100307730 MsG0180006116.01.T01:intron 25.0%
!!! TCATATTTTGAAGAGATCAA+AGG - Chr1:100312057-100312076 None:intergenic 25.0%
!!! TGGAAATCATTTTAAGGAAT+AGG + Chr1:100310554-100310573 MsG0180006116.01.T01:intron 25.0%
!!! TGGCTTCTGAAATATAATTA+TGG - Chr1:100310224-100310243 None:intergenic 25.0%
!!! TTGTCAATTAGTTGCTATTT+GGG - Chr1:100308820-100308839 None:intergenic 25.0%
!!! TTTTAAGAACTTTTGTCTCA+AGG - Chr1:100311428-100311447 None:intergenic 25.0%
AAAAAAAGTAGCAACCAGTA+TGG - Chr1:100311959-100311978 None:intergenic 30.0%
AAATCAAGATTTACGACGAA+GGG + Chr1:100310799-100310818 MsG0180006116.01.T01:intron 30.0%
AACCCCATATCTTCAATTTA+GGG - Chr1:100308673-100308692 None:intergenic 30.0%
AACTATAGTAGAAAAGATGG+TGG + Chr1:100307533-100307552 MsG0180006116.01.T01:intron 30.0%
ACACACTAACTACTAACATT+TGG - Chr1:100310057-100310076 None:intergenic 30.0%
ACTTTGTTACAGCTCAATAT+TGG + Chr1:100308247-100308266 MsG0180006116.01.T01:intron 30.0%
AGAGAATGGAATTATAAGGT+GGG - Chr1:100311650-100311669 None:intergenic 30.0%
AGAGGAAAAAGAGAACAATT+AGG - Chr1:100306806-100306825 None:intergenic 30.0%
AGATGCAAGAACTATATACA+GGG + Chr1:100310713-100310732 MsG0180006116.01.T01:intron 30.0%
AGTTCCGATAAATTCATGTT+AGG + Chr1:100312904-100312923 MsG0180006116.01.T01:exon 30.0%
ATAAACCATTCTCTTATGTG+GGG + Chr1:100311156-100311175 MsG0180006116.01.T01:intron 30.0%
ATCTCCCTAAATTGAAGATA+TGG + Chr1:100308666-100308685 MsG0180006116.01.T01:intron 30.0%
ATGTTTATGGTAGTTACTGA+TGG + Chr1:100312276-100312295 MsG0180006116.01.T01:intron 30.0%
ATTGAACTACTGCCTATAAT+TGG + Chr1:100309722-100309741 MsG0180006116.01.T01:CDS 30.0%
ATTGTAGTTTCTCCTAAACT+AGG - Chr1:100309229-100309248 None:intergenic 30.0%
ATTTGAATCTGGAAATGCAA+TGG + Chr1:100306746-100306765 MsG0180006116.01.T01:exon 30.0%
CAATGAATTATCCGAATGAT+GGG - Chr1:100309534-100309553 None:intergenic 30.0%
CATAAACCATTCTCTTATGT+GGG + Chr1:100311155-100311174 MsG0180006116.01.T01:intron 30.0%
CCAACTTATTTGTAATAGTG+GGG - Chr1:100309152-100309171 None:intergenic 30.0%
CTAAATAATTTGATTCACGG+AGG + Chr1:100311051-100311070 MsG0180006116.01.T01:intron 30.0%
CTCACCTAACATGAATTTAT+CGG - Chr1:100312911-100312930 None:intergenic 30.0%
CTTCATGATAAGAATCATGA+TGG + Chr1:100307242-100307261 MsG0180006116.01.T01:CDS 30.0%
GAACATAATTCTGACCTATT+TGG + Chr1:100311012-100311031 MsG0180006116.01.T01:intron 30.0%
GAGGAAAAAGAGAACAATTA+GGG - Chr1:100306805-100306824 None:intergenic 30.0%
GAGTTTATTGAATGACAAGA+AGG + Chr1:100311502-100311521 MsG0180006116.01.T01:intron 30.0%
GATATGCATTACAAAATACG+TGG + Chr1:100308636-100308655 MsG0180006116.01.T01:intron 30.0%
GCACCCTAAGATATTATAAA+AGG - Chr1:100312497-100312516 None:intergenic 30.0%
GGCAGTATATAAATAACAAG+TGG - Chr1:100308783-100308802 None:intergenic 30.0%
GTAAAAGTGGTAGCTAATTA+AGG + Chr1:100310257-100310276 MsG0180006116.01.T01:intron 30.0%
GTGCCCAATATTAGAAATAT+GGG + Chr1:100309274-100309293 MsG0180006116.01.T01:intron 30.0%
TAGAGAATGGAATTATAAGG+TGG - Chr1:100311651-100311670 None:intergenic 30.0%
TAGATGCAAGAACTATATAC+AGG + Chr1:100310712-100310731 MsG0180006116.01.T01:intron 30.0%
TAGTTAGTGTGTTATGTTAG+TGG + Chr1:100310065-100310084 MsG0180006116.01.T01:intron 30.0%
TATAGTTCTTGCATCTATGA+AGG - Chr1:100310709-100310728 None:intergenic 30.0%
TATGCATTACAAAATACGTG+GGG + Chr1:100308638-100308657 MsG0180006116.01.T01:intron 30.0%
TCGTGCTTAATTTACATGTT+AGG + Chr1:100312584-100312603 MsG0180006116.01.T01:intron 30.0%
TCTCCCTAAATTGAAGATAT+GGG + Chr1:100308667-100308686 MsG0180006116.01.T01:intron 30.0%
TCTTAAATAGGAAAGCTGTT+AGG + Chr1:100308608-100308627 MsG0180006116.01.T01:intron 30.0%
TGAATTTGAAGGTTATGAGA+TGG + Chr1:100313051-100313070 MsG0180006116.01.T01:three_prime_UTR 30.0%
TGATGCAATTCAATAGATGT+TGG - Chr1:100312725-100312744 None:intergenic 30.0%
TGGTAGAGAATGGAATTATA+AGG - Chr1:100311654-100311673 None:intergenic 30.0%
TGTGCCCAATATTAGAAATA+TGG + Chr1:100309273-100309292 MsG0180006116.01.T01:intron 30.0%
TTGAAACAATATCAGTGACA+AGG + Chr1:100313024-100313043 MsG0180006116.01.T01:three_prime_UTR 30.0%
TTGAACTACTGCCTATAATT+GGG + Chr1:100309723-100309742 MsG0180006116.01.T01:CDS 30.0%
TTTGAATCTGGAAATGCAAT+GGG + Chr1:100306747-100306766 MsG0180006116.01.T01:exon 30.0%
! AATTGTTGCTTCTGATATGT+TGG - Chr1:100311847-100311866 None:intergenic 30.0%
! CGTATTTTGTAATGCATATC+AGG - Chr1:100308636-100308655 None:intergenic 30.0%
! GAACTAATTTTTCCTGACTA+TGG + Chr1:100312627-100312646 MsG0180006116.01.T01:intron 30.0%
! TAGAGATTTTCAAATCACAC+TGG + Chr1:100313261-100313280 MsG0180006116.01.T01:three_prime_UTR 30.0%
! TCCAAAAAATGTGGATTATG+TGG + Chr1:100310845-100310864 MsG0180006116.01.T01:intron 30.0%
!! AGAATCTTTTGGCTATGATA+TGG + Chr1:100307945-100307964 MsG0180006116.01.T01:CDS 30.0%
!! GAATCTTTTGGCTATGATAT+GGG + Chr1:100307946-100307965 MsG0180006116.01.T01:CDS 30.0%
!! GTACTTTCTTTGAAACACTA+TGG + Chr1:100309629-100309648 MsG0180006116.01.T01:intron 30.0%
!! TCATACATTTGCTATTGAGT+TGG - Chr1:100311602-100311621 None:intergenic 30.0%
!! TTCCAATGTTTTTATTGCCA+AGG + Chr1:100309080-100309099 MsG0180006116.01.T01:intron 30.0%
!!! TCCACATAATCCACATTTTT+TGG - Chr1:100310849-100310868 None:intergenic 30.0%
!!! TTTTCTAAGATCTAATACCC+TGG - Chr1:100310475-100310494 None:intergenic 30.0%
AAACTAGGCTTATGTGGTTT+GGG + Chr1:100307556-100307575 MsG0180006116.01.T01:intron 35.0%
AAATAACAAGTGGGATTGAG+AGG - Chr1:100308773-100308792 None:intergenic 35.0%
AAGCAAAATGAGTGTGACTT+GGG - Chr1:100313407-100313426 None:intergenic 35.0%
AATAACAAGTGGGATTGAGA+GGG - Chr1:100308772-100308791 None:intergenic 35.0%
AATCAAGATTTACGACGAAG+GGG + Chr1:100310800-100310819 MsG0180006116.01.T01:intron 35.0%
AATGATTTCCAAGATCTGCT+TGG - Chr1:100310545-100310564 None:intergenic 35.0%
ACAATTCAAACGGTGAAACA+TGG + Chr1:100309921-100309940 MsG0180006116.01.T01:intron 35.0%
ACACTCTTATTGCTTGAGAA+AGG + Chr1:100309833-100309852 MsG0180006116.01.T01:intron 35.0%
ACTCGATATTCCTTGTCATT+GGG - Chr1:100311134-100311153 None:intergenic 35.0%
AGATCAACAAAATCATCAGC+AGG - Chr1:100307149-100307168 None:intergenic 35.0%
AGCCTTGGCAATAAAAACAT+TGG - Chr1:100309085-100309104 None:intergenic 35.0%
ATAAGAGTTTCCACCTTCAT+GGG - Chr1:100309128-100309147 None:intergenic 35.0%
ATATGCAAGTGTAAACAACG+AGG - Chr1:100308078-100308097 None:intergenic 35.0%
CAACCCCATATCTTCAATTT+AGG - Chr1:100308674-100308693 None:intergenic 35.0%
CAATGTGGAGGTTCAAAATT+TGG + Chr1:100308981-100309000 MsG0180006116.01.T01:intron 35.0%
CACATCAACCATTTAACTGA+GGG - Chr1:100310166-100310185 None:intergenic 35.0%
CCAATGAATTATCCGAATGA+TGG - Chr1:100309535-100309554 None:intergenic 35.0%
CCATCATTCGGATAATTCAT+TGG + Chr1:100309532-100309551 MsG0180006116.01.T01:CDS 35.0%
CCATTTAACTGAGGGTTATA+AGG - Chr1:100310158-100310177 None:intergenic 35.0%
CCCCACTATTACAAATAAGT+TGG + Chr1:100309149-100309168 MsG0180006116.01.T01:intron 35.0%
CCTTATAACCCTCAGTTAAA+TGG + Chr1:100310155-100310174 MsG0180006116.01.T01:intron 35.0%
CGATAAATTCATGTTAGGTG+AGG + Chr1:100312909-100312928 MsG0180006116.01.T01:intron 35.0%
CGCAACTATAGTAGAAAAGA+TGG + Chr1:100307530-100307549 MsG0180006116.01.T01:intron 35.0%
CTCCCTAAATTGAAGATATG+GGG + Chr1:100308668-100308687 MsG0180006116.01.T01:intron 35.0%
GAAAATTATTCCCAGCAATG+TGG + Chr1:100308966-100308985 MsG0180006116.01.T01:intron 35.0%
GAAATCAAGATTTACGACGA+AGG + Chr1:100310798-100310817 MsG0180006116.01.T01:intron 35.0%
GAATAAAAAGGTTCCCATGA+AGG + Chr1:100309112-100309131 MsG0180006116.01.T01:intron 35.0%
GAATTTATCGGAACTCATCA+TGG - Chr1:100312899-100312918 None:intergenic 35.0%
GATCCTCAATCGAATTAGAA+GGG + Chr1:100311790-100311809 MsG0180006116.01.T01:intron 35.0%
GATTTCATTAGAGAGAGAGT+TGG + Chr1:100307499-100307518 MsG0180006116.01.T01:intron 35.0%
GCATAAACCATTCTCTTATG+TGG + Chr1:100311154-100311173 MsG0180006116.01.T01:intron 35.0%
GTAGAAGGCCAAATATGAAA+TGG - Chr1:100308519-100308538 None:intergenic 35.0%
GTTACACAACAGATGTTGAA+GGG - Chr1:100312663-100312682 None:intergenic 35.0%
TAAGCAAAATGAGTGTGACT+TGG - Chr1:100313408-100313427 None:intergenic 35.0%
TAAGGATTCTCAATCATCTC+AGG - Chr1:100312825-100312844 None:intergenic 35.0%
TATAAGAGTTTCCACCTTCA+TGG - Chr1:100309129-100309148 None:intergenic 35.0%
TATAGTGATTACTGTCTCTG+TGG + Chr1:100307875-100307894 MsG0180006116.01.T01:intron 35.0%
TATTTAGACTAATTTGGGCC+TGG - Chr1:100311038-100311057 None:intergenic 35.0%
TCACATACATAGTGAGAGAA+TGG - Chr1:100311287-100311306 None:intergenic 35.0%
TCACATCAACCATTTAACTG+AGG - Chr1:100310167-100310186 None:intergenic 35.0%
TCATCGTTCTCAAAGAGAAA+TGG + Chr1:100307217-100307236 MsG0180006116.01.T01:CDS 35.0%
TCATTATCAGGAGAATGCAA+TGG - Chr1:100308492-100308511 None:intergenic 35.0%
TCTACGACTAAACCGTAAAT+TGG - Chr1:100312238-100312257 None:intergenic 35.0%
TCTACTGTATACCCTAGTAA+TGG + Chr1:100311342-100311361 MsG0180006116.01.T01:intron 35.0%
TGAGACTAGCAACCTAATAA+GGG - Chr1:100313096-100313115 None:intergenic 35.0%
TGAGCAAGTAATTGAATGAG+TGG + Chr1:100310318-100310337 MsG0180006116.01.T01:intron 35.0%
TGTTACACAACAGATGTTGA+AGG - Chr1:100312664-100312683 None:intergenic 35.0%
TTACCAATCTTCATGGTTGT+AGG - Chr1:100311902-100311921 None:intergenic 35.0%
TTAGCTGCTGCCATTAAAAT+GGG + Chr1:100311218-100311237 MsG0180006116.01.T01:intron 35.0%
TTAGTGTGTTATGTTAGTGG+CGG + Chr1:100310068-100310087 MsG0180006116.01.T01:intron 35.0%
TTCTAACTTCGTAACATACG+TGG - Chr1:100309011-100309030 None:intergenic 35.0%
TTCTAATTCGATTGAGGATC+CGG - Chr1:100311790-100311809 None:intergenic 35.0%
TTGACCGGTATTTATGCTTT+AGG + Chr1:100312548-100312567 MsG0180006116.01.T01:intron 35.0%
TTGCTTTGCATAGTAATGCT+CGG - Chr1:100309762-100309781 None:intergenic 35.0%
TTGTGAATACATGAAGCTAG+AGG - Chr1:100308588-100308607 None:intergenic 35.0%
TTTAATGCATCTGATGCAGA+TGG + Chr1:100307988-100308007 MsG0180006116.01.T01:CDS 35.0%
! AAATGCAATGGGTTTAGGAT+CGG + Chr1:100306758-100306777 MsG0180006116.01.T01:exon 35.0%
! ATCTTCATGAGTTGACTATG+TGG + Chr1:100307165-100307184 MsG0180006116.01.T01:CDS 35.0%
! ATTTTCATCTCTATCTGCAC+AGG + Chr1:100309687-100309706 MsG0180006116.01.T01:intron 35.0%
! CGTATGCTATCATTCACTTT+TGG + Chr1:100309664-100309683 MsG0180006116.01.T01:intron 35.0%
! GCTAAATATTGTAGGTTGAC+CGG + Chr1:100312533-100312552 MsG0180006116.01.T01:intron 35.0%
! GTGTTACTCTTAGTTCTCAT+TGG + Chr1:100313303-100313322 MsG0180006116.01.T01:three_prime_UTR 35.0%
! TCTAGAATAAACCTGCCATA+TGG + Chr1:100311737-100311756 MsG0180006116.01.T01:intron 35.0%
! TCTTTTTCCCAAAATCGATG+TGG + Chr1:100307121-100307140 MsG0180006116.01.T01:CDS 35.0%
! TGAAGGTGAGTTGAATTGAA+AGG + Chr1:100306672-100306691 MsG0180006116.01.T01:five_prime_UTR 35.0%
!! AATGTTTTTATTGCCAAGGC+TGG + Chr1:100309084-100309103 MsG0180006116.01.T01:intron 35.0%
!! ATGATGTTTTGTTGGATGTG+TGG + Chr1:100307448-100307467 MsG0180006116.01.T01:intron 35.0%
!! ATGGCAGAGTTTTGATGTTT+CGG + Chr1:100313070-100313089 MsG0180006116.01.T01:three_prime_UTR 35.0%
!! CATTTGCTATTGAGTTGGTT+AGG - Chr1:100311597-100311616 None:intergenic 35.0%
!! CTTATTTCTATCACTGCCTT+GGG + Chr1:100309371-100309390 MsG0180006116.01.T01:intron 35.0%
!! TAGAAAAGATGGTGGAAACT+AGG + Chr1:100307541-100307560 MsG0180006116.01.T01:intron 35.0%
!! TGAGCAAACAATTTTCTAGC+TGG - Chr1:100309563-100309582 None:intergenic 35.0%
!! TGTCGTTCTGAGAGATAATT+GGG - Chr1:100308740-100308759 None:intergenic 35.0%
!! TTATTTCTATCACTGCCTTG+GGG + Chr1:100309372-100309391 MsG0180006116.01.T01:intron 35.0%
!! TTGTCGATTCTCTACTATGA+AGG + Chr1:100311314-100311333 MsG0180006116.01.T01:intron 35.0%
!! TTGTCGTTCTGAGAGATAAT+TGG - Chr1:100308741-100308760 None:intergenic 35.0%
!! TTTTCCTTTCATTGCTGTTG+TGG - Chr1:100311540-100311559 None:intergenic 35.0%
AAACAATTTCTCTAGGCAGC+CGG - Chr1:100312369-100312388 None:intergenic 40.0%
AAAGAGACTCAGACAGAGAT+GGG + Chr1:100309432-100309451 MsG0180006116.01.T01:CDS 40.0%
AAATAAGCACCCAGTAGAGA+AGG - Chr1:100308937-100308956 None:intergenic 40.0%
AAGGAATAGGGGTTATGACA+GGG + Chr1:100310567-100310586 MsG0180006116.01.T01:intron 40.0%
AATAAGCACCCAGTAGAGAA+GGG - Chr1:100308936-100308955 None:intergenic 40.0%
AATTATTCCCAGCAATGTGG+AGG + Chr1:100308969-100308988 MsG0180006116.01.T01:intron 40.0%
AATTTCTTTATGCCTGCCCT+AGG + Chr1:100308712-100308731 MsG0180006116.01.T01:intron 40.0%
ACAGCAATGAAAGGAAAACC+AGG + Chr1:100311542-100311561 MsG0180006116.01.T01:intron 40.0%
ACAGCACAAAGCTTCAACAA+TGG + Chr1:100308180-100308199 MsG0180006116.01.T01:CDS 40.0%
AGAGAATGGAGAGTCAGAAA+GGG - Chr1:100311273-100311292 None:intergenic 40.0%
AGAGGAAGTAAATACTCTGG+TGG + Chr1:100312417-100312436 MsG0180006116.01.T01:intron 40.0%
AGGCAGACGTTGACAAAAAT+GGG + Chr1:100312787-100312806 MsG0180006116.01.T01:intron 40.0%
ATAGTAAGTGTGATCGACAC+TGG - Chr1:100311368-100311387 None:intergenic 40.0%
ATCGACACTGTCCATTACTA+GGG - Chr1:100311356-100311375 None:intergenic 40.0%
ATGAATGGTAGGGAAAACCA+GGG + Chr1:100310455-100310474 MsG0180006116.01.T01:intron 40.0%
ATGGGGTTGCAGAAATATGA+GGG + Chr1:100308685-100308704 MsG0180006116.01.T01:intron 40.0%
ATTAAAATGGGCCTTTGAGC+AGG + Chr1:100311230-100311249 MsG0180006116.01.T01:intron 40.0%
ATTGAATGAGTGGCTGTGTT+AGG + Chr1:100310328-100310347 MsG0180006116.01.T01:intron 40.0%
ATTTCTTTATGCCTGCCCTA+GGG + Chr1:100308713-100308732 MsG0180006116.01.T01:intron 40.0%
ATTTGGGAGTAGTTAGGATG+AGG - Chr1:100308804-100308823 None:intergenic 40.0%
CAAGTGATTCTGGTAGAGAA+TGG - Chr1:100311664-100311683 None:intergenic 40.0%
CAATTCAAGACATGACCAAG+TGG + Chr1:100310743-100310762 MsG0180006116.01.T01:intron 40.0%
CACTCGATATTCCTTGTCAT+TGG - Chr1:100311135-100311154 None:intergenic 40.0%
CAGCAACGTATCTGTGATTA+GGG - Chr1:100308894-100308913 None:intergenic 40.0%
CAGCAATGAAAGGAAAACCA+GGG + Chr1:100311543-100311562 MsG0180006116.01.T01:intron 40.0%
CATTCTCTACCAGAATCACT+TGG + Chr1:100311662-100311681 MsG0180006116.01.T01:intron 40.0%
CCCTCCTAAAGCATAAATAC+CGG - Chr1:100312555-100312574 None:intergenic 40.0%
CTGAGACTAGCAACCTAATA+AGG - Chr1:100313097-100313116 None:intergenic 40.0%
CTTAGCTGCTGCCATTAAAA+TGG + Chr1:100311217-100311236 MsG0180006116.01.T01:intron 40.0%
CTTCCTACAACCATGAAGAT+TGG + Chr1:100311896-100311915 MsG0180006116.01.T01:intron 40.0%
GAAACTAGGCTTATGTGGTT+TGG + Chr1:100307555-100307574 MsG0180006116.01.T01:intron 40.0%
GAAGAGATCAAAGGGAAAGT+AGG - Chr1:100312048-100312067 None:intergenic 40.0%
GACAAGGAGTCTGAATTTGA+AGG + Chr1:100313040-100313059 MsG0180006116.01.T01:three_prime_UTR 40.0%
GAGAGAGGAAGTAAATACTC+TGG + Chr1:100312414-100312433 MsG0180006116.01.T01:intron 40.0%
GAGGAAGTAAATACTCTGGT+GGG + Chr1:100312418-100312437 MsG0180006116.01.T01:intron 40.0%
GATGTGTGGTAAGATTAGAC+GGG + Chr1:100307462-100307481 MsG0180006116.01.T01:intron 40.0%
GCACACTGCACATATGTTTA+TGG + Chr1:100312263-100312282 MsG0180006116.01.T01:intron 40.0%
GCTGGTATTACCAATCTTCA+TGG - Chr1:100311909-100311928 None:intergenic 40.0%
GGAATTATAAGGTGGGTAGT+AGG - Chr1:100311643-100311662 None:intergenic 40.0%
GGATCCTCAATCGAATTAGA+AGG + Chr1:100311789-100311808 MsG0180006116.01.T01:intron 40.0%
GGATGGAGTTTCCCAATTAT+AGG - Chr1:100309737-100309756 None:intergenic 40.0%
GGATGTGTGGTAAGATTAGA+CGG + Chr1:100307461-100307480 MsG0180006116.01.T01:intron 40.0%
GGCTTAGGAAAAGAAGAAAG+AGG + Chr1:100310990-100311009 MsG0180006116.01.T01:intron 40.0%
GGGTTATAAGGTAGATGAGT+TGG - Chr1:100310146-100310165 None:intergenic 40.0%
GTTGGAGAAAAGATGGTCAT+AGG - Chr1:100310102-100310121 None:intergenic 40.0%
TAAAAAGGTTCCCATGAAGG+TGG + Chr1:100309115-100309134 MsG0180006116.01.T01:intron 40.0%
TAAGGAATAGGGGTTATGAC+AGG + Chr1:100310566-100310585 MsG0180006116.01.T01:intron 40.0%
TAATCCATCTAGGAACGTGA+TGG - Chr1:100313367-100313386 None:intergenic 40.0%
TAATTCTGACCTATTTGGCC+AGG + Chr1:100311017-100311036 MsG0180006116.01.T01:intron 40.0%
TAGGAACGTGATGGTCAAAT+TGG - Chr1:100313358-100313377 None:intergenic 40.0%
TAGGAGAGAATATCTCTCGT+AGG - Chr1:100311578-100311597 None:intergenic 40.0%
TAGTAAGTGTGATCGACACT+GGG - Chr1:100311367-100311386 None:intergenic 40.0%
TATAGTATGTGTCCGAGAGT+GGG + Chr1:100307384-100307403 MsG0180006116.01.T01:intron 40.0%
TATGGGGTTGCAGAAATATG+AGG + Chr1:100308684-100308703 MsG0180006116.01.T01:intron 40.0%
TCACAATGACTCCCATCATT+CGG + Chr1:100309520-100309539 MsG0180006116.01.T01:CDS 40.0%
TCTACTGGGTGCTTATTTCA+TGG + Chr1:100308939-100308958 MsG0180006116.01.T01:intron 40.0%
TCTTCAACAAGCTCATAGAG+AGG + Chr1:100307190-100307209 MsG0180006116.01.T01:CDS 40.0%
TGAAGTAAAGCCCAATGACA+AGG + Chr1:100311121-100311140 MsG0180006116.01.T01:intron 40.0%
TGACGTATTCCAAGTGATTC+TGG - Chr1:100311674-100311693 None:intergenic 40.0%
TGAGTATGATCCTCCTAGTT+GGG + Chr1:100307280-100307299 MsG0180006116.01.T01:CDS 40.0%
TTACCAAATCAAAGAGCCCA+TGG - Chr1:100309481-100309500 None:intergenic 40.0%
TTATAGTATGTGTCCGAGAG+TGG + Chr1:100307383-100307402 MsG0180006116.01.T01:intron 40.0%
TTCACGGAGGTGATGTAAAT+TGG + Chr1:100311064-100311083 MsG0180006116.01.T01:intron 40.0%
TTCATGAAGTCTTCCCATTC+AGG - Chr1:100307044-100307063 None:intergenic 40.0%
TTGATGTTTCGGCCCTTATT+AGG + Chr1:100313081-100313100 MsG0180006116.01.T01:three_prime_UTR 40.0%
TTGCCCTTCTAATTCGATTG+AGG - Chr1:100311796-100311815 None:intergenic 40.0%
TTGCTAGCAAGATGTACCTT+TGG - Chr1:100310962-100310981 None:intergenic 40.0%
TTGGGACCAAATTGTTGGAA+TGG + Chr1:100310644-100310663 MsG0180006116.01.T01:intron 40.0%
TTTCCATGGGCTCTTTGATT+TGG + Chr1:100309475-100309494 MsG0180006116.01.T01:CDS 40.0%
TTTGCATAGTAATGCTCGGA+CGG - Chr1:100309758-100309777 None:intergenic 40.0%
TTTGCTGATAGGATCCATCA+TGG + Chr1:100313173-100313192 MsG0180006116.01.T01:three_prime_UTR 40.0%
! AAAGCCTTATCCCACTAAGT+GGG - Chr1:100307781-100307800 None:intergenic 40.0%
! AATGTGGATTATGTGGAGTC+TGG + Chr1:100310852-100310871 MsG0180006116.01.T01:intron 40.0%
! ACCGGTATTTATGCTTTAGG+AGG + Chr1:100312551-100312570 MsG0180006116.01.T01:intron 40.0%
! AGGACAGGTGGGTATTTTAT+TGG + Chr1:100310348-100310367 MsG0180006116.01.T01:intron 40.0%
! AGGCTGGACTAGGAATAAAA+AGG + Chr1:100309100-100309119 MsG0180006116.01.T01:intron 40.0%
! ATTTTGAACCTCCACATTGC+TGG - Chr1:100308980-100308999 None:intergenic 40.0%
! CAGGTGGGTATTTTATTGGA+AGG + Chr1:100310352-100310371 MsG0180006116.01.T01:intron 40.0%
! CTTTCTTCTTTTCCTAAGCC+AGG - Chr1:100310990-100311009 None:intergenic 40.0%
! TATTTGGCCTTCTACACACA+TGG + Chr1:100308524-100308543 MsG0180006116.01.T01:intron 40.0%
! TCTGGAAATGCAATGGGTTT+AGG + Chr1:100306753-100306772 MsG0180006116.01.T01:exon 40.0%
! TGCTCAAAGGCCCATTTTAA+TGG - Chr1:100311231-100311250 None:intergenic 40.0%
! TTGTTGTTGTCAGTGTGCTA+TGG + Chr1:100307808-100307827 MsG0180006116.01.T01:intron 40.0%
! TTTTATTCCTAGTCCAGCCT+TGG - Chr1:100309100-100309119 None:intergenic 40.0%
! TTTTGAACCTCCACATTGCT+GGG - Chr1:100308979-100308998 None:intergenic 40.0%
!! AGATGAGTTGGTATAGAAGG+AGG - Chr1:100310134-100310153 None:intergenic 40.0%
!! CCGGTATTTATGCTTTAGGA+GGG + Chr1:100312552-100312571 MsG0180006116.01.T01:intron 40.0%
!! CTTTTGGCTATGATATGGGT+TGG + Chr1:100307950-100307969 MsG0180006116.01.T01:CDS 40.0%
!! GATATACTGGTTCATGAGAG+AGG + Chr1:100312399-100312418 MsG0180006116.01.T01:intron 40.0%
!! GATGAGTTGGTATAGAAGGA+GGG - Chr1:100310133-100310152 None:intergenic 40.0%
!! GCTTATTTCTATCACTGCCT+TGG + Chr1:100309370-100309389 MsG0180006116.01.T01:intron 40.0%
!! GGTAGATGAGTTGGTATAGA+AGG - Chr1:100310137-100310156 None:intergenic 40.0%
!! GTCGTTCTGAGAGATAATTG+GGG - Chr1:100308739-100308758 None:intergenic 40.0%
!! GTTGCTATTTGGGAGTAGTT+AGG - Chr1:100308810-100308829 None:intergenic 40.0%
AAATACTCTGGTGGGAAAGC+TGG + Chr1:100312426-100312445 MsG0180006116.01.T01:intron 45.0%
AACAATTTCTCTAGGCAGCC+GGG - Chr1:100312368-100312387 None:intergenic 45.0%
AACTGTAACCACCTGCTCAA+AGG - Chr1:100311244-100311263 None:intergenic 45.0%
AAGATCTGCTTGGTCGAATG+GGG - Chr1:100310535-100310554 None:intergenic 45.0%
AATACTCTGGTGGGAAAGCT+GGG + Chr1:100312427-100312446 MsG0180006116.01.T01:intron 45.0%
AATTCATGCTCACATGGGGT+GGG + Chr1:100310909-100310928 MsG0180006116.01.T01:intron 45.0%
ACAGGGGACTACAAACATGT+TGG - Chr1:100308315-100308334 None:intergenic 45.0%
ACCCCATGTGAGCATGAATT+CGG - Chr1:100310909-100310928 None:intergenic 45.0%
AGAAAGAGAGCTGAGTCAAC+AGG - Chr1:100311717-100311736 None:intergenic 45.0%
AGAAGGTTCGAGAGTGAAGT+TGG - Chr1:100306892-100306911 None:intergenic 45.0%
AGCTCCACAACAGCAATGAA+AGG + Chr1:100311533-100311552 MsG0180006116.01.T01:intron 45.0%
AGCTTCAACAATGGTTGTGC+AGG + Chr1:100308189-100308208 MsG0180006116.01.T01:CDS 45.0%
AGGAATAGGGGTTATGACAG+GGG + Chr1:100310568-100310587 MsG0180006116.01.T01:intron 45.0%
AGGATTAGGGAACACCGTAT+TGG + Chr1:100310498-100310517 MsG0180006116.01.T01:intron 45.0%
AGGGGACTACAAACATGTTG+GGG - Chr1:100308313-100308332 None:intergenic 45.0%
ATATCTCTCGTAGGAGCCTT+AGG - Chr1:100311569-100311588 None:intergenic 45.0%
ATCTTGCTAGCAAGATGACC+TGG + Chr1:100310969-100310988 MsG0180006116.01.T01:intron 45.0%
ATGTAGCTGAACCCACTTAG+TGG + Chr1:100307767-100307786 MsG0180006116.01.T01:intron 45.0%
ATGTGCCCCACATAAGAGAA+TGG - Chr1:100311164-100311183 None:intergenic 45.0%
ATGTGGGGCACATATCAGAA+TGG + Chr1:100311171-100311190 MsG0180006116.01.T01:intron 45.0%
ATTAGGGAACACCGTATTGG+GGG + Chr1:100310501-100310520 MsG0180006116.01.T01:intron 45.0%
CAAGATCTGCTTGGTCGAAT+GGG - Chr1:100310536-100310555 None:intergenic 45.0%
CAATCATCTCAGGCAAAGTG+AGG - Chr1:100312815-100312834 None:intergenic 45.0%
CACAAGATACTTGCAGTCAG+TGG + Chr1:100309203-100309222 MsG0180006116.01.T01:intron 45.0%
CACCTTTCTTTCCCAAGAAC+AGG - Chr1:100310599-100310618 None:intergenic 45.0%
CAGGCAGACGTTGACAAAAA+TGG + Chr1:100312786-100312805 MsG0180006116.01.T01:intron 45.0%
CAGGGGACTACAAACATGTT+GGG - Chr1:100308314-100308333 None:intergenic 45.0%
CATGAATTCGGCAACTCCAT+CGG - Chr1:100310897-100310916 None:intergenic 45.0%
CATGAGGGTTGGAGAAAAGA+TGG - Chr1:100310109-100310128 None:intergenic 45.0%
CCAAGTGGTAGAGATGTTTG+AGG + Chr1:100310758-100310777 MsG0180006116.01.T01:intron 45.0%
CCAGCAGATTTAACCCAACT+AGG - Chr1:100307296-100307315 None:intergenic 45.0%
CCTAGTTGGGTTAAATCTGC+TGG + Chr1:100307293-100307312 MsG0180006116.01.T01:CDS 45.0%
CCTCAAACATCTCTACCACT+TGG - Chr1:100310761-100310780 None:intergenic 45.0%
CGATCACACTTACTATGCCA+GGG + Chr1:100311396-100311415 MsG0180006116.01.T01:intron 45.0%
CTGAGTATGATCCTCCTAGT+TGG + Chr1:100307279-100307298 MsG0180006116.01.T01:CDS 45.0%
CTGTTCTTGGGAAAGAAAGG+TGG + Chr1:100310597-100310616 MsG0180006116.01.T01:intron 45.0%
GAAAATACCCGTCACCATCT+TGG - Chr1:100309592-100309611 None:intergenic 45.0%
GAAAGAGACTCAGACAGAGA+TGG + Chr1:100309431-100309450 MsG0180006116.01.T01:CDS 45.0%
GAAGAGTGGTGGTTGTTGAA+GGG - Chr1:100306840-100306859 None:intergenic 45.0%
GAGAGAATGGAGAGTCAGAA+AGG - Chr1:100311274-100311293 None:intergenic 45.0%
GAGGATAGTCAGATCACTAG+AGG + Chr1:100307635-100307654 MsG0180006116.01.T01:intron 45.0%
GAGTCTTGGGACCAAATTGT+TGG + Chr1:100310639-100310658 MsG0180006116.01.T01:intron 45.0%
GATCGACACTGTCCATTACT+AGG - Chr1:100311357-100311376 None:intergenic 45.0%
GATGAATGGTAGGGAAAACC+AGG + Chr1:100310454-100310473 MsG0180006116.01.T01:intron 45.0%
GATTAGGGAACACCGTATTG+GGG + Chr1:100310500-100310519 MsG0180006116.01.T01:intron 45.0%
GCAGATTTAACCCAACTAGG+AGG - Chr1:100307293-100307312 None:intergenic 45.0%
GCAGCAACGTATCTGTGATT+AGG - Chr1:100308895-100308914 None:intergenic 45.0%
GCGGAGACATCCAAAAAATG+TGG + Chr1:100310836-100310855 MsG0180006116.01.T01:intron 45.0%
GCTAGATTCATCTCCATTCC+CGG + Chr1:100312347-100312366 MsG0180006116.01.T01:intron 45.0%
GCTTCAACAATGGTTGTGCA+GGG + Chr1:100308190-100308209 MsG0180006116.01.T01:CDS 45.0%
GGATTAGGGAACACCGTATT+GGG + Chr1:100310499-100310518 MsG0180006116.01.T01:intron 45.0%
GTATAGAAGGAGGGACATGA+GGG - Chr1:100310124-100310143 None:intergenic 45.0%
GTTCCCATTGTTTGTCTTCG+CGG - Chr1:100306983-100307002 None:intergenic 45.0%
GTTCGAGAGTGAAGTTGGAA+CGG - Chr1:100306887-100306906 None:intergenic 45.0%
GTTGAATCTTCACCCACTCT+CGG - Chr1:100307399-100307418 None:intergenic 45.0%
TAATTTGGGCCTGGCCAAAT+AGG - Chr1:100311029-100311048 None:intergenic 45.0%
TATTACCCTCCAGATGATCC+AGG - Chr1:100313206-100313225 None:intergenic 45.0%
TCACGAATCCCAACCTGAAT+GGG + Chr1:100307028-100307047 MsG0180006116.01.T01:CDS 45.0%
TCATCAGCCATGTGTGTAGA+AGG - Chr1:100308534-100308553 None:intergenic 45.0%
TCGATCACACTTACTATGCC+AGG + Chr1:100311395-100311414 MsG0180006116.01.T01:intron 45.0%
TGAACCCACTTAGTGGGATA+AGG + Chr1:100307774-100307793 MsG0180006116.01.T01:intron 45.0%
TGAAGTCTTCCCATTCAGGT+TGG - Chr1:100307040-100307059 None:intergenic 45.0%
TGAAGTTGGAACGGAGTTTG+AGG - Chr1:100306878-100306897 None:intergenic 45.0%
TGCCGAATTCATGCTCACAT+GGG + Chr1:100310904-100310923 MsG0180006116.01.T01:intron 45.0%
TGCTCAAAAAGGGACTTGCA+GGG - Chr1:100310304-100310323 None:intergenic 45.0%
TGGATCATCTGGAGGGTAAT+AGG + Chr1:100313205-100313224 MsG0180006116.01.T01:three_prime_UTR 45.0%
TGGATCTATCTGCCTGTGTT+GGG + Chr1:100310617-100310636 MsG0180006116.01.T01:intron 45.0%
TGGTGGAAACTAGGCTTATG+TGG + Chr1:100307550-100307569 MsG0180006116.01.T01:intron 45.0%
TGTAGCTGAACCCACTTAGT+GGG + Chr1:100307768-100307787 MsG0180006116.01.T01:intron 45.0%
TGTGGGGCACATATCAGAAT+GGG + Chr1:100311172-100311191 MsG0180006116.01.T01:intron 45.0%
TTGACCATCACGTTCCTAGA+TGG + Chr1:100313360-100313379 MsG0180006116.01.T01:three_prime_UTR 45.0%
TTGCCGAATTCATGCTCACA+TGG + Chr1:100310903-100310922 MsG0180006116.01.T01:intron 45.0%
TTGCTCAAAAAGGGACTTGC+AGG - Chr1:100310305-100310324 None:intergenic 45.0%
TTGGTGAGAAGAATGGGAAC+GGG - Chr1:100306919-100306938 None:intergenic 45.0%
TTGTCTCAAGGTGAAAACCC+TGG - Chr1:100311416-100311435 None:intergenic 45.0%
TTTATTGCCAAGGCTGGACT+AGG + Chr1:100309090-100309109 MsG0180006116.01.T01:intron 45.0%
TTTGCTCAGCTTGACCAAGA+TGG + Chr1:100309575-100309594 MsG0180006116.01.T01:CDS 45.0%
! ACGTTGCTGCGAAACTTTTG+AGG + Chr1:100308905-100308924 MsG0180006116.01.T01:intron 45.0%
! ACTAAGTGGGTTCAGCTACA+TGG - Chr1:100307768-100307787 None:intergenic 45.0%
! CAAAGCCTTATCCCACTAAG+TGG - Chr1:100307782-100307801 None:intergenic 45.0%
! CGTTGCTGCGAAACTTTTGA+GGG + Chr1:100308906-100308925 MsG0180006116.01.T01:intron 45.0%
! GAAGTCTTCCCATTCAGGTT+GGG - Chr1:100307039-100307058 None:intergenic 45.0%
! GTAGAGATGTTTGAGGCTGA+GGG + Chr1:100310765-100310784 MsG0180006116.01.T01:intron 45.0%
! GTTGGTGAGAAGAATGGGAA+CGG - Chr1:100306920-100306939 None:intergenic 45.0%
! TAGGTTGCTAGTCTCAGTCA+TGG + Chr1:100313100-100313119 MsG0180006116.01.T01:three_prime_UTR 45.0%
! TTGCTAGTCTCAGTCATGGT+GGG + Chr1:100313104-100313123 MsG0180006116.01.T01:three_prime_UTR 45.0%
! TTGTGCTGTTGCTATCAGCT+GGG - Chr1:100308169-100308188 None:intergenic 45.0%
! TTTGTGCTGTTGCTATCAGC+TGG - Chr1:100308170-100308189 None:intergenic 45.0%
!! GACAGGTTGGTGAGAAGAAT+GGG - Chr1:100306925-100306944 None:intergenic 45.0%
!! TTGGCTATGATATGGGTTGG+TGG + Chr1:100307953-100307972 MsG0180006116.01.T01:CDS 45.0%
!!! AGCAGGATCCACATCGATTT+TGG - Chr1:100307132-100307151 None:intergenic 45.0%
!!! AGTCATGGTGGGGTTTTTTG+GGG + Chr1:100313115-100313134 MsG0180006116.01.T01:three_prime_UTR 45.0%
!!! CAGTCATGGTGGGGTTTTTT+GGG + Chr1:100313114-100313133 MsG0180006116.01.T01:three_prime_UTR 45.0%
!!! GCAGGATCCACATCGATTTT+GGG - Chr1:100307131-100307150 None:intergenic 45.0%
!!! GTTTTTTGGGGTGGCAACAT+TGG + Chr1:100313127-100313146 MsG0180006116.01.T01:three_prime_UTR 45.0%
!!! TCAGTCATGGTGGGGTTTTT+TGG + Chr1:100313113-100313132 MsG0180006116.01.T01:three_prime_UTR 45.0%
AAAATGGGCCTTTGAGCAGG+TGG + Chr1:100311233-100311252 MsG0180006116.01.T01:intron 50.0%
ACTTGGGCGGAAAAACTCTG+AGG + Chr1:100310670-100310689 MsG0180006116.01.T01:intron 50.0%
AGACTCAGACAGAGATGGGA+AGG + Chr1:100309436-100309455 MsG0180006116.01.T01:CDS 50.0%
AGCTTGACCAAGATGGTGAC+GGG + Chr1:100309582-100309601 MsG0180006116.01.T01:CDS 50.0%
AGGGTTTGCCCTTCTCTACT+GGG + Chr1:100308925-100308944 MsG0180006116.01.T01:intron 50.0%
AGGTGGGTAGTAGGATGAAG+TGG - Chr1:100311634-100311653 None:intergenic 50.0%
AGTTGGAACGGAGTTTGAGG+CGG - Chr1:100306875-100306894 None:intergenic 50.0%
ATCCAGGTGCAACTCCATGA+TGG - Chr1:100313190-100313209 None:intergenic 50.0%
ATCCATCATGGAGTTGCACC+TGG + Chr1:100313185-100313204 MsG0180006116.01.T01:three_prime_UTR 50.0%
ATGAGTGGCTGTGTTAGGAC+AGG + Chr1:100310333-100310352 MsG0180006116.01.T01:intron 50.0%
CAGCTTGACCAAGATGGTGA+CGG + Chr1:100309581-100309600 MsG0180006116.01.T01:CDS 50.0%
CATAGTAATGCTCGGACGGA+TGG - Chr1:100309754-100309773 None:intergenic 50.0%
CCAAGATCTGCTTGGTCGAA+TGG - Chr1:100310537-100310556 None:intergenic 50.0%
CCACCGCGAAGACAAACAAT+GGG + Chr1:100306977-100306996 MsG0180006116.01.T01:CDS 50.0%
CCATTCGACCAAGCAGATCT+TGG + Chr1:100310534-100310553 MsG0180006116.01.T01:intron 50.0%
CTAGCAAGATGACCTGGCTT+AGG + Chr1:100310975-100310994 MsG0180006116.01.T01:intron 50.0%
CTCACGAATCCCAACCTGAA+TGG + Chr1:100307027-100307046 MsG0180006116.01.T01:CDS 50.0%
GAAAGGAAAACCAGGGCCTA+AGG + Chr1:100311550-100311569 MsG0180006116.01.T01:intron 50.0%
GAATGGGAACGGGAATGAGA+AGG - Chr1:100306909-100306928 None:intergenic 50.0%
GAATTCATGCTCACATGGGG+TGG + Chr1:100310908-100310927 MsG0180006116.01.T01:intron 50.0%
GAGAGATAATTGGGGCCCTA+GGG - Chr1:100308731-100308750 None:intergenic 50.0%
GCATCTGATGCAGATGGAGA+TGG + Chr1:100307994-100308013 MsG0180006116.01.T01:CDS 50.0%
GCCGAATTCATGCTCACATG+GGG + Chr1:100310905-100310924 MsG0180006116.01.T01:intron 50.0%
GGAAGAGTGGTGGTTGTTGA+AGG - Chr1:100306841-100306860 None:intergenic 50.0%
GGCCTGTTCTTGGGAAAGAA+AGG + Chr1:100310594-100310613 MsG0180006116.01.T01:intron 50.0%
GGGTAGTAGGATGAAGTGGT+GGG - Chr1:100311630-100311649 None:intergenic 50.0%
GGTAGTAGGATGAAGTGGTG+GGG - Chr1:100311629-100311648 None:intergenic 50.0%
GGTATAGAAGGAGGGACATG+AGG - Chr1:100310125-100310144 None:intergenic 50.0%
GTGGATCTATCTGCCTGTGT+TGG + Chr1:100310616-100310635 MsG0180006116.01.T01:intron 50.0%
TCAACAATGGTTGTGCAGGG+AGG + Chr1:100308193-100308212 MsG0180006116.01.T01:CDS 50.0%
TCGATTGAGGATCCGGTAGA+GGG - Chr1:100311783-100311802 None:intergenic 50.0%
TGAGAGATAATTGGGGCCCT+AGG - Chr1:100308732-100308751 None:intergenic 50.0%
TGAGGCTGAGGGAATTGTAG+TGG + Chr1:100310776-100310795 MsG0180006116.01.T01:intron 50.0%
TGCAGTCAGTGGCCTAGTTT+AGG + Chr1:100309214-100309233 MsG0180006116.01.T01:intron 50.0%
TGGGTAGTAGGATGAAGTGG+TGG - Chr1:100311631-100311650 None:intergenic 50.0%
TTCGATTGAGGATCCGGTAG+AGG - Chr1:100311784-100311803 None:intergenic 50.0%
TTGCACCTGGATCATCTGGA+GGG + Chr1:100313198-100313217 MsG0180006116.01.T01:three_prime_UTR 50.0%
! AACTCCATCGGTTGCGTTGT+GGG - Chr1:100310885-100310904 None:intergenic 50.0%
! AGATGTTGAAGGGCATGCTG+AGG - Chr1:100312653-100312672 None:intergenic 50.0%
! GGTAGAGATGTTTGAGGCTG+AGG + Chr1:100310764-100310783 MsG0180006116.01.T01:intron 50.0%
! GTTGCTAGTCTCAGTCATGG+TGG + Chr1:100313103-100313122 MsG0180006116.01.T01:three_prime_UTR 50.0%
! TGAAGGGAGAGTGTGAAGAG+AGG - Chr1:100306824-100306843 None:intergenic 50.0%
! TGCTAGTCTCAGTCATGGTG+GGG + Chr1:100313105-100313124 MsG0180006116.01.T01:three_prime_UTR 50.0%
!! GGACAGGTTGGTGAGAAGAA+TGG - Chr1:100306926-100306945 None:intergenic 50.0%
!! TACCACTGGAGAAGCACCAA+AGG + Chr1:100310943-100310962 MsG0180006116.01.T01:intron 50.0%
!! TACCTTTGGTGCTTCTCCAG+TGG - Chr1:100310948-100310967 None:intergenic 50.0%
!! TTCAGGTTGGGATTCGTGAG+CGG - Chr1:100307027-100307046 None:intergenic 50.0%
AAGGGGAGCAGTGCTTCATG+CGG + Chr1:100310817-100310836 MsG0180006116.01.T01:intron 55.0%
AGAAGGAGGGACATGAGGGT+TGG - Chr1:100310120-100310139 None:intergenic 55.0%
AGTGGCTGTGTTAGGACAGG+TGG + Chr1:100310336-100310355 MsG0180006116.01.T01:intron 55.0%
CCCATTGTTTGTCTTCGCGG+TGG - Chr1:100306980-100306999 None:intergenic 55.0%
CTGCCTGTGTTGGGAGTCTT+GGG + Chr1:100310626-100310645 MsG0180006116.01.T01:intron 55.0%
GAGGGTTTGCCCTTCTCTAC+TGG + Chr1:100308924-100308943 MsG0180006116.01.T01:intron 55.0%
GCATGAGCATGAGAACCCCA+AGG - Chr1:100309390-100309409 None:intergenic 55.0%
GCCACCGCGAAGACAAACAA+TGG + Chr1:100306976-100306995 MsG0180006116.01.T01:CDS 55.0%
GCTTGGGTCATTCCCTCTAC+CGG + Chr1:100311768-100311787 MsG0180006116.01.T01:intron 55.0%
GGAGTTGCACCTGGATCATC+TGG + Chr1:100313194-100313213 MsG0180006116.01.T01:three_prime_UTR 55.0%
GGGTTAAGCCTCCCCCAATA+CGG - Chr1:100310515-100310534 None:intergenic 55.0%
GGTTGTGCAGGGAGGAAATC+AGG + Chr1:100308201-100308220 MsG0180006116.01.T01:CDS 55.0%
GTGCAGGGAGGAAATCAGGT+TGG + Chr1:100308205-100308224 MsG0180006116.01.T01:intron 55.0%
GTGGCTGTGTTAGGACAGGT+GGG + Chr1:100310337-100310356 MsG0180006116.01.T01:intron 55.0%
GTTGCACCTGGATCATCTGG+AGG + Chr1:100313197-100313216 MsG0180006116.01.T01:three_prime_UTR 55.0%
TAGAGGGAATGACCCAAGCG+AGG - Chr1:100311767-100311786 None:intergenic 55.0%
TAGGGGTTATGACAGGGGAG+AGG + Chr1:100310573-100310592 MsG0180006116.01.T01:intron 55.0%
TCTGCCTGTGTTGGGAGTCT+TGG + Chr1:100310625-100310644 MsG0180006116.01.T01:intron 55.0%
TTTCTCTAGGCAGCCGGGAA+TGG - Chr1:100312363-100312382 None:intergenic 55.0%
! ACTCCATCGGTTGCGTTGTG+GGG - Chr1:100310884-100310903 None:intergenic 55.0%
! CAACTCCATCGGTTGCGTTG+TGG - Chr1:100310886-100310905 None:intergenic 55.0%
! GTTCGAGTTCGGCAACGAGA+GGG - Chr1:100306956-100306975 None:intergenic 55.0%
!! GGGCAATGGGTTGATACCAC+TGG + Chr1:100310929-100310948 MsG0180006116.01.T01:intron 55.0%
!! TCAGGTTGGGATTCGTGAGC+GGG - Chr1:100307026-100307045 None:intergenic 55.0%
!!! CATGGTGGGGTTTTTTGGGG+TGG + Chr1:100313118-100313137 MsG0180006116.01.T01:three_prime_UTR 55.0%
ACAGGGGAGAGGCCTGTTCT+TGG + Chr1:100310584-100310603 MsG0180006116.01.T01:intron 60.0%
AGGGAACACCGTATTGGGGG+AGG + Chr1:100310504-100310523 MsG0180006116.01.T01:intron 60.0%
CAGGGGAGAGGCCTGTTCTT+GGG + Chr1:100310585-100310604 MsG0180006116.01.T01:intron 60.0%
CCATATGGCGAGCCTCGCTT+GGG + Chr1:100311752-100311771 MsG0180006116.01.T01:intron 60.0%
GATAATTGGGGCCCTAGGGC+AGG - Chr1:100308727-100308746 None:intergenic 60.0%
GCTCACATGGGGTGGGCAAT+GGG + Chr1:100310916-100310935 MsG0180006116.01.T01:intron 60.0%
GGCATGCTGAGGCCATAGTC+AGG - Chr1:100312642-100312661 None:intergenic 60.0%
GGTCCCAAGACTCCCAACAC+AGG - Chr1:100310632-100310651 None:intergenic 60.0%
TCGGCAACGAGAGGGTCGAA+GGG - Chr1:100306948-100306967 None:intergenic 60.0%
TGCTCACATGGGGTGGGCAA+TGG + Chr1:100310915-100310934 MsG0180006116.01.T01:intron 60.0%
TTCGGCAACGAGAGGGTCGA+AGG - Chr1:100306949-100306968 None:intergenic 60.0%
! CGTTCGAGTTCGGCAACGAG+AGG - Chr1:100306957-100306976 None:intergenic 60.0%
! CTCCATCGGTTGCGTTGTGG+GGG - Chr1:100310883-100310902 None:intergenic 60.0%
! TGGAACGGAGTTTGAGGCGG+CGG - Chr1:100306872-100306891 None:intergenic 60.0%
! TTCGCGGTGGCGTTCGAGTT+CGG - Chr1:100306967-100306986 None:intergenic 60.0%
ACGAGAGGGTCGAAGGGGAC+AGG - Chr1:100306942-100306961 None:intergenic 65.0%
AGCGAGGCTCGCCATATGGC+AGG - Chr1:100311751-100311770 None:intergenic 65.0%
CCCAAGCGAGGCTCGCCATA+TGG - Chr1:100311755-100311774 None:intergenic 65.0%
CGGCAACGAGAGGGTCGAAG+GGG - Chr1:100306947-100306966 None:intergenic 65.0%
CTCGTAGGAGCCTTAGGCCC+TGG - Chr1:100311563-100311582 None:intergenic 65.0%
GAGGGTCGAAGGGGACAGGT+TGG - Chr1:100306938-100306957 None:intergenic 65.0%
GCCATATGGCGAGCCTCGCT+TGG + Chr1:100311751-100311770 MsG0180006116.01.T01:intron 65.0%
TGCCCCCACAACGCAACCGA+TGG + Chr1:100310878-100310897 MsG0180006116.01.T01:intron 65.0%
! ATTCGTGAGCGGGAGCGTGC+TGG - Chr1:100307016-100307035 None:intergenic 65.0%
! GGAGTTTGAGGCGGCGGTGA+CGG - Chr1:100306866-100306885 None:intergenic 65.0%
! GGTGACGGTGGGAAGAGTGG+TGG - Chr1:100306851-100306870 None:intergenic 65.0%
! TTTGAGGCGGCGGTGACGGT+GGG - Chr1:100306862-100306881 None:intergenic 65.0%
! GGCGGTGACGGTGGGAAGAG+TGG - Chr1:100306854-100306873 None:intergenic 70.0%
! GTTTGAGGCGGCGGTGACGG+TGG - Chr1:100306863-100306882 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 100306670 100313484 100306670 ID=MsG0180006116.01;Name=MsG0180006116.01
Chr1 mRNA 100306670 100313484 100306670 ID=MsG0180006116.01.T01;Parent=MsG0180006116.01;Name=MsG0180006116.01.T01;_AED=0.46;_eAED=0.46;_QI=95|1|1|1|0.83|0.71|7|476|371
Chr1 exon 100306670 100307314 100306670 ID=MsG0180006116.01.T01:exon:24978;Parent=MsG0180006116.01.T01
Chr1 exon 100307941 100308043 100307941 ID=MsG0180006116.01.T01:exon:24979;Parent=MsG0180006116.01.T01
Chr1 exon 100308157 100308222 100308157 ID=MsG0180006116.01.T01:exon:24980;Parent=MsG0180006116.01.T01
Chr1 exon 100309430 100309603 100309430 ID=MsG0180006116.01.T01:exon:24981;Parent=MsG0180006116.01.T01
Chr1 exon 100309709 100309805 100309709 ID=MsG0180006116.01.T01:exon:24982;Parent=MsG0180006116.01.T01
Chr1 exon 100312789 100312925 100312789 ID=MsG0180006116.01.T01:exon:24983;Parent=MsG0180006116.01.T01
Chr1 exon 100313020 100313484 100313020 ID=MsG0180006116.01.T01:exon:24984;Parent=MsG0180006116.01.T01
Chr1 five_prime_UTR 100306670 100306764 100306670 ID=MsG0180006116.01.T01:five_prime_utr;Parent=MsG0180006116.01.T01
Chr1 CDS 100306765 100307314 100306765 ID=MsG0180006116.01.T01:cds;Parent=MsG0180006116.01.T01
Chr1 CDS 100307941 100308043 100307941 ID=MsG0180006116.01.T01:cds;Parent=MsG0180006116.01.T01
Chr1 CDS 100308157 100308222 100308157 ID=MsG0180006116.01.T01:cds;Parent=MsG0180006116.01.T01
Chr1 CDS 100309430 100309603 100309430 ID=MsG0180006116.01.T01:cds;Parent=MsG0180006116.01.T01
Chr1 CDS 100309709 100309805 100309709 ID=MsG0180006116.01.T01:cds;Parent=MsG0180006116.01.T01
Chr1 CDS 100312789 100312914 100312789 ID=MsG0180006116.01.T01:cds;Parent=MsG0180006116.01.T01
Chr1 three_prime_UTR 100312915 100312925 100312915 ID=MsG0180006116.01.T01:three_prime_utr;Parent=MsG0180006116.01.T01
Chr1 three_prime_UTR 100313020 100313484 100313020 ID=MsG0180006116.01.T01:three_prime_utr;Parent=MsG0180006116.01.T01
Gene Sequence

>MsG0180006116.01.T01

ATGGGTTTAGGATCGGTATTGATATACACGATCTTAGCCCTAATTGTTCTCTTTTTCCTCTCTTCACACTCTCCCTTCAACAACCACCACTCTTCCCACCGTCACCGCCGCCTCAAACTCCGTTCCAACTTCACTCTCGAACCTTCTCATTCCCGTTCCCATTCTTCTCACCAACCTGTCCCCTTCGACCCTCTCGTTGCCGAACTCGAACGCCACCGCGAAGACAAACAATGGGAACAACAACACATCCAGCACGCTCCCGCTCACGAATCCCAACCTGAATGGGAAGACTTCATGAACGCTGAAGACTTCATCAATGATGAAGATAAGTTCAATGTTACATCTAGACTTCTTCTTCTTTTTCCCAAAATCGATGTGGATCCTGCTGATGATTTTGTTGATCTTCATGAGTTGACTATGTGGAATCTTCAACAAGCTCATAGAGAGGTTCTTCATCGTTCTCAAAGAGAAATGGAACTTCATGATAAGAATCATGATGGTTTTGTTTCTTTCTCTGAGTATGATCCTCCTAGTTGGGTTAAATCTGCTGATAAAGAATCTTTTGGCTATGATATGGGTTGGTGGAAAGAAGAGCATTTTAATGCATCTGATGCAGATGGAGATGGTGTTCTTAACTTAACTGAGTTCAATGACTTTCTTCACCCAGCTGATAGCAACAGCACAAAGCTTCAACAATGGTTGTGCAGGGAGGAAATCAGAGAAAGAGACTCAGACAGAGATGGGAAGGTCAACTTCAAAGAATTTTTCCATGGGCTCTTTGATTTGGTAAGAAACTATGATGAAGAAAGTCACAATGACTCCCATCATTCGGATAATTCATTGGATGCTCCAGCTAGAAAATTGTTTGCTCAGCTTGACCAAGATGGTGACGGGTTGTTATCAGATATTGAACTACTGCCTATAATTGGGAAACTCCATCCGTCCGAGCATTACTATGCAAAGCAACAATCAGAATATATCATTTCACAGGCAGACGTTGACAAAAATGGGCGCCTCACTTTGCCTGAGATGATTGAGAATCCTTATGTATTTTATAGTGCTATTTTCAACGATGATGAAGATGAATATAATGATTACCATGATGAGTTCCGATAA

Protein sequence

>MsG0180006116.01.T01

MGLGSVLIYTILALIVLFFLSSHSPFNNHHSSHRHRRLKLRSNFTLEPSHSRSHSSHQPVPFDPLVAELERHREDKQWEQQHIQHAPAHESQPEWEDFMNAEDFINDEDKFNVTSRLLLLFPKIDVDPADDFVDLHELTMWNLQQAHREVLHRSQREMELHDKNHDGFVSFSEYDPPSWVKSADKESFGYDMGWWKEEHFNASDADGDGVLNLTEFNDFLHPADSNSTKLQQWLCREEIRERDSDRDGKVNFKEFFHGLFDLVRNYDEESHNDSHHSDNSLDAPARKLFAQLDQDGDGLLSDIELLPIIGKLHPSEHYYAKQQSEYIISQADVDKNGRLTLPEMIENPYVFYSAIFNDDEDEYNDYHDEFR*