Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045553.01.T01 | KAF7809595.1 | 49.455 | 275 | 76 | 6 | 16 | 227 | 62 | 336 | 2.20E-72 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045553.01.T01 | Q9SHP0 | 42.373 | 177 | 47 | 3 | 75 | 196 | 148 | 324 | 5.26E-38 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045553.01.T01 | A0A834SVP5 | 49.455 | 275 | 76 | 6 | 16 | 227 | 62 | 336 | 1.05e-72 | 233 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048289.01 | MsG0880045553.01 | 0.823113 | 1.649569e-53 | 1.407438e-50 |
| MsG0180000367.01 | MsG0880045553.01 | 0.814379 | 1.587773e-51 | 1.063707e-48 |
| MsG0180001137.01 | MsG0880045553.01 | -0.809663 | 1.692658e-50 | 9.998156e-48 |
| MsG0180001719.01 | MsG0880045553.01 | 0.824686 | 7.057077e-54 | 6.296445e-51 |
| MsG0880044437.01 | MsG0880045553.01 | 0.815922 | 7.212861e-52 | 5.039042e-49 |
| MsG0880044548.01 | MsG0880045553.01 | -0.815806 | 7.655814e-52 | 5.331796e-49 |
| MsG0880045356.01 | MsG0880045553.01 | 0.817195 | 3.740155e-52 | 2.705617e-49 |
| MsG0880045439.01 | MsG0880045553.01 | 0.803364 | 3.611665e-49 | 1.811389e-46 |
| MsG0880045553.01 | MsG0880045584.01 | 0.824529 | 7.682180e-54 | 6.822725e-51 |
| MsG0880045553.01 | MsG0880045647.01 | 0.803723 | 3.041695e-49 | 1.539746e-46 |
| MsG0880045553.01 | MsG0880045703.01 | -0.815578 | 8.605722e-52 | 5.956012e-49 |
| MsG0880045553.01 | MsG0880046010.01 | -0.822507 | 2.282637e-53 | 1.914386e-50 |
| MsG0880045553.01 | MsG0880046992.01 | 0.808885 | 2.486060e-50 | 1.438141e-47 |
| MsG0880045553.01 | MsG0880047057.01 | 0.810056 | 1.393261e-50 | 8.314820e-48 |
| MsG0880045553.01 | MsG0880047450.01 | 0.804286 | 2.323163e-49 | 1.193164e-46 |
| MsG0180003484.01 | MsG0880045553.01 | 0.809037 | 2.305922e-50 | 1.339443e-47 |
| MsG0180003637.01 | MsG0880045553.01 | 0.831466 | 1.643186e-55 | 1.784663e-52 |
| MsG0180003857.01 | MsG0880045553.01 | 0.817913 | 2.576724e-52 | 1.901077e-49 |
| MsG0180003905.01 | MsG0880045553.01 | 0.842163 | 3.058594e-58 | 4.597192e-55 |
| MsG0180004185.01 | MsG0880045553.01 | 0.800921 | 1.148914e-48 | 5.415762e-46 |
| MsG0180004705.01 | MsG0880045553.01 | 0.815912 | 7.248628e-52 | 5.062671e-49 |
| MsG0180004714.01 | MsG0880045553.01 | -0.801100 | 1.055750e-48 | 4.999448e-46 |
| MsG0180004828.01 | MsG0880045553.01 | 0.801866 | 7.355909e-49 | 3.551293e-46 |
| MsG0180005096.01 | MsG0880045553.01 | 0.807023 | 6.189165e-50 | 3.410237e-47 |
| MsG0180005367.01 | MsG0880045553.01 | 0.822584 | 2.190669e-53 | 1.841405e-50 |
| MsG0180005655.01 | MsG0880045553.01 | 0.847827 | 9.039057e-60 | 1.626664e-56 |
| MsG0180005819.01 | MsG0880045553.01 | 0.865475 | 5.749329e-65 | 1.872997e-61 |
| MsG0180005833.01 | MsG0880045553.01 | -0.802280 | 6.045533e-49 | 2.949575e-46 |
| MsG0180005898.01 | MsG0880045553.01 | -0.800554 | 1.365079e-48 | 6.374797e-46 |
| MsG0180006076.01 | MsG0880045553.01 | -0.810651 | 1.036913e-50 | 6.285980e-48 |
| MsG0180006116.01 | MsG0880045553.01 | 0.829186 | 5.925683e-55 | 6.020616e-52 |
| MsG0280006316.01 | MsG0880045553.01 | 0.806646 | 7.436171e-50 | 4.057361e-47 |
| MsG0780040685.01 | MsG0880045553.01 | -0.801265 | 9.768050e-49 | 4.644571e-46 |
| MsG0780040847.01 | MsG0880045553.01 | 0.802380 | 5.766944e-49 | 2.820898e-46 |
| MsG0780040899.01 | MsG0880045553.01 | 0.802777 | 4.775609e-49 | 2.359746e-46 |
| MsG0280011016.01 | MsG0880045553.01 | 0.800057 | 1.722814e-48 | 7.944706e-46 |
| MsG0280011281.01 | MsG0880045553.01 | -0.811569 | 6.557236e-51 | 4.072993e-48 |
| MsG0380014642.01 | MsG0880045553.01 | -0.810984 | 8.783513e-51 | 5.372977e-48 |
| MsG0380014807.01 | MsG0880045553.01 | 0.811293 | 7.526895e-51 | 4.641161e-48 |
| MsG0680031713.01 | MsG0880045553.01 | -0.813988 | 1.936465e-51 | 1.283553e-48 |
| MsG0680035584.01 | MsG0880045553.01 | -0.806607 | 7.578916e-50 | 4.131294e-47 |
| MsG0480018486.01 | MsG0880045553.01 | 0.818464 | 1.933718e-52 | 1.448623e-49 |
| MsG0480018767.01 | MsG0880045553.01 | 0.842699 | 2.204765e-58 | 3.370110e-55 |
| MsG0480019171.01 | MsG0880045553.01 | 0.802458 | 5.557220e-49 | 2.723580e-46 |
| MsG0480020398.01 | MsG0880045553.01 | 0.828661 | 7.939287e-55 | 7.942739e-52 |
| MsG0480020506.01 | MsG0880045553.01 | 0.830152 | 3.449027e-55 | 3.604053e-52 |
| MsG0480020938.01 | MsG0880045553.01 | -0.831157 | 1.956933e-55 | 2.105910e-52 |
| MsG0480021226.01 | MsG0880045553.01 | 0.845889 | 3.063999e-59 | 5.181555e-56 |
| MsG0480021300.01 | MsG0880045553.01 | 0.839131 | 1.903709e-57 | 2.604096e-54 |
| MsG0480021967.01 | MsG0880045553.01 | -0.806792 | 6.926375e-50 | 3.793688e-47 |
| MsG0480021977.01 | MsG0880045553.01 | 0.813495 | 2.487305e-51 | 1.626900e-48 |
| MsG0480022242.01 | MsG0880045553.01 | -0.830293 | 3.186037e-55 | 3.342586e-52 |
| MsG0480022244.01 | MsG0880045553.01 | -0.822962 | 1.789016e-53 | 1.519848e-50 |
| MsG0480023067.01 | MsG0880045553.01 | 0.823475 | 1.358135e-53 | 1.170580e-50 |
| MsG0480023103.01 | MsG0880045553.01 | -0.821507 | 3.891600e-53 | 3.171986e-50 |
| MsG0480023173.01 | MsG0880045553.01 | -0.812332 | 4.470952e-51 | 2.834835e-48 |
| MsG0480023322.01 | MsG0880045553.01 | 0.820666 | 6.080410e-53 | 4.841218e-50 |
| MsG0480023414.01 | MsG0880045553.01 | 0.800953 | 1.131566e-48 | 5.338386e-46 |
| MsG0480023851.01 | MsG0880045553.01 | -0.817583 | 3.059158e-52 | 2.236650e-49 |
| MsG0580025140.01 | MsG0880045553.01 | 0.804034 | 2.622370e-49 | 1.338161e-46 |
| MsG0580025464.01 | MsG0880045553.01 | 0.828156 | 1.051347e-54 | 1.036498e-51 |
| MsG0580025633.01 | MsG0880045553.01 | 0.829492 | 4.993352e-55 | 5.118590e-52 |
| MsG0380015656.01 | MsG0880045553.01 | 0.879677 | 1.025441e-69 | 5.609973e-66 |
| MsG0380015871.01 | MsG0880045553.01 | 0.800753 | 1.243285e-48 | 5.835322e-46 |
| MsG0380016051.01 | MsG0880045553.01 | 0.814526 | 1.473038e-51 | 9.907902e-49 |
| MsG0380016110.01 | MsG0880045553.01 | 0.837024 | 6.632475e-57 | 8.507335e-54 |
| MsG0380016250.01 | MsG0880045553.01 | 0.831448 | 1.659780e-55 | 1.801767e-52 |
| MsG0380016380.01 | MsG0880045553.01 | -0.820842 | 5.539254e-53 | 4.432500e-50 |
| MsG0380016456.01 | MsG0880045553.01 | -0.805428 | 1.341272e-49 | 7.094253e-47 |
| MsG0380016856.01 | MsG0880045553.01 | 0.809081 | 2.257350e-50 | 1.312769e-47 |
| MsG0380017331.01 | MsG0880045553.01 | 0.822546 | 2.235432e-53 | 1.876959e-50 |
| MsG0380017594.01 | MsG0880045553.01 | 0.817005 | 4.127209e-52 | 2.970341e-49 |
| MsG0380017595.01 | MsG0880045553.01 | 0.841167 | 5.598275e-58 | 8.156599e-55 |
| MsG0380017622.01 | MsG0880045553.01 | 0.830952 | 2.197761e-55 | 2.350808e-52 |
| MsG0380017666.01 | MsG0880045553.01 | 0.808326 | 3.272575e-50 | 1.865779e-47 |
| MsG0380017826.01 | MsG0880045553.01 | 0.822274 | 2.585782e-53 | 2.154234e-50 |
| MsG0380017967.01 | MsG0880045553.01 | 0.881951 | 1.565543e-70 | 9.356557e-67 |
| MsG0480018228.01 | MsG0880045553.01 | 0.828637 | 8.049463e-55 | 8.047102e-52 |
| MsG0580027276.01 | MsG0880045553.01 | -0.818496 | 1.901814e-52 | 1.425865e-49 |
| MsG0580028302.01 | MsG0880045553.01 | 0.850479 | 1.654126e-60 | 3.244255e-57 |
| MsG0580029751.01 | MsG0880045553.01 | -0.812391 | 4.342020e-51 | 2.757323e-48 |
| MsG0580030141.01 | MsG0880045553.01 | 0.827040 | 1.948402e-54 | 1.859194e-51 |
| MsG0280006717.01 | MsG0880045553.01 | 0.819881 | 9.199597e-53 | 7.167525e-50 |
| MsG0280007667.01 | MsG0880045553.01 | 0.826935 | 2.064458e-54 | 1.964015e-51 |
| MsG0280009526.01 | MsG0880045553.01 | 0.858045 | 1.078191e-62 | 2.715712e-59 |
| MsG0280010103.01 | MsG0880045553.01 | 0.821633 | 3.639383e-53 | 2.976997e-50 |
| MsG0780036480.01 | MsG0880045553.01 | 0.806392 | 8.409562e-50 | 4.559031e-47 |
| MsG0780036553.01 | MsG0880045553.01 | 0.815392 | 9.465714e-52 | 6.517856e-49 |
| MsG0780036759.01 | MsG0880045553.01 | 0.803394 | 3.560391e-49 | 1.787126e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045553.01.T01 | MTR_8g074010 | 42.146 | 261 | 64 | 6 | 19 | 192 | 66 | 326 | 1.27e-51 | 172 |
| MsG0880045553.01.T01 | MTR_8g074010 | 100.000 | 47 | 0 | 0 | 181 | 227 | 382 | 428 | 5.81e-24 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045553.01.T01 | AT2G17630 | 42.373 | 177 | 47 | 3 | 75 | 196 | 148 | 324 | 5.36e-39 | 139 |
| MsG0880045553.01.T01 | AT2G17630 | 93.617 | 47 | 3 | 0 | 181 | 227 | 376 | 422 | 2.95e-22 | 94.4 |
| MsG0880045553.01.T01 | AT4G35630 | 33.969 | 262 | 88 | 6 | 20 | 196 | 71 | 332 | 7.62e-39 | 139 |
| MsG0880045553.01.T01 | AT4G35630 | 95.745 | 47 | 2 | 0 | 181 | 227 | 384 | 430 | 1.42e-22 | 95.1 |
Find 68 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGGTTTGGGGCTGGGCT+TGG | 0.167965 | 8:-60994988 | None:intergenic |
| CTGAGAATGGGGTTGGGTTT+GGG | 0.170695 | 8:-60994999 | None:intergenic |
| AATGGGGTTGGGTTTGGGGC+TGG | 0.194519 | 8:-60994994 | None:intergenic |
| ATGGGGTTGGGTTTGGGGCT+GGG | 0.207238 | 8:-60994993 | None:intergenic |
| GGGGCTGGGCTTGGGCTTGG+TGG | 0.224362 | 8:-60994979 | None:intergenic |
| TCTGAGAATGGGGTTGGGTT+TGG | 0.247209 | 8:-60995000 | None:intergenic |
| TTGGGTTTGGGGCTGGGCTT+GGG | 0.250751 | 8:-60994987 | None:intergenic |
| TTTGGGGCTGGGCTTGGGCT+TGG | 0.253169 | 8:-60994982 | None:intergenic |
| GGCTTGGGCTTGGTGGTTGG+TGG | 0.304017 | 8:-60994972 | None:intergenic |
| TCAACGGCACGGCGGCGAAC+TGG | 0.311232 | 8:-60995249 | None:intergenic |
| ATTGTAAACCAAACGTGATT+TGG | 0.312678 | 8:+60995352 | MsG0880045553.01.T01:CDS |
| TAGAGCTCTGATTGGCTTTG+AGG | 0.328385 | 8:-60995073 | None:intergenic |
| CTGGGCTTGGGCTTGGTGGT+TGG | 0.331082 | 8:-60994975 | None:intergenic |
| GGAAGCTGCTAAGGAGAATA+TGG | 0.343378 | 8:+60995955 | MsG0880045553.01.T01:intron |
| TTGGGCTTGGTGGTTGGTGG+CGG | 0.345545 | 8:-60994969 | None:intergenic |
| GGAGAATATGGTTCAGCTTA+AGG | 0.351474 | 8:+60995967 | MsG0880045553.01.T01:CDS |
| AATTTACAATGCTATGCCTT+TGG | 0.366401 | 8:+60996021 | MsG0880045553.01.T01:CDS |
| TGAGAATGGGGTTGGGTTTG+GGG | 0.396597 | 8:-60994998 | None:intergenic |
| AAACCAAACGTGATTTGGTC+TGG | 0.403318 | 8:+60995357 | MsG0880045553.01.T01:CDS |
| TTCCCAGACCAAATCACGTT+TGG | 0.411453 | 8:-60995360 | None:intergenic |
| GAGAATATGGTTCAGCTTAA+GGG | 0.419573 | 8:+60995968 | MsG0880045553.01.T01:CDS |
| GCTGTTGATTACATCGTTAC+CGG | 0.422181 | 8:+60995291 | MsG0880045553.01.T01:CDS |
| CGCGTCTTCAACTTCGCCGC+TGG | 0.423193 | 8:+60995024 | MsG0880045553.01.T01:CDS |
| ATTACATCGTTACCGGTTCG+TGG | 0.435789 | 8:+60995298 | MsG0880045553.01.T01:CDS |
| CTCTACAACTGGCGTGGATC+CGG | 0.440034 | 8:+60995091 | MsG0880045553.01.T01:CDS |
| TGTTTCAATTCATCAAAAGA+TGG | 0.444164 | 8:-60995405 | None:intergenic |
| TACAATGCTATGCCTTTGGC+TGG | 0.448300 | 8:+60996025 | MsG0880045553.01.T01:CDS |
| AGCTTTATCACTCCACGAAC+CGG | 0.456226 | 8:-60995310 | None:intergenic |
| CACGGCGGCGAACTGGGTGG+TGG | 0.456284 | 8:-60995242 | None:intergenic |
| TTTGGCTGGTGTTGAGAAGT+TGG | 0.458036 | 8:+60996039 | MsG0880045553.01.T01:CDS |
| ATTGTGAGAAATGATTTGAT+TGG | 0.460613 | 8:+60995635 | MsG0880045553.01.T01:CDS |
| CGCGATCTGAGAATGGGGTT+GGG | 0.463704 | 8:-60995005 | None:intergenic |
| TTGAAGACGCGATCTGAGAA+TGG | 0.467905 | 8:-60995012 | None:intergenic |
| TGAAGACGCGATCTGAGAAT+GGG | 0.471910 | 8:-60995011 | None:intergenic |
| GGCTGGTGTTGAGAAGTTGG+TGG | 0.474131 | 8:+60996042 | MsG0880045553.01.T01:CDS |
| CTTAAGGGTCATAGGTCTGT+TGG | 0.490369 | 8:+60995983 | MsG0880045553.01.T01:CDS |
| ACGCGATCTGAGAATGGGGT+TGG | 0.491982 | 8:-60995006 | None:intergenic |
| CAACGGCACGGCGGCGAACT+GGG | 0.495655 | 8:-60995248 | None:intergenic |
| GCCAATCAGAGCTCTACAAC+TGG | 0.496005 | 8:+60995080 | MsG0880045553.01.T01:CDS |
| TGGTTCAGCTTAAGGGTCAT+AGG | 0.502181 | 8:+60995975 | MsG0880045553.01.T01:CDS |
| AACCAAACGTGATTTGGTCT+GGG | 0.503653 | 8:+60995358 | MsG0880045553.01.T01:CDS |
| CAGGGAGGTGGCGGGTCCAG+CGG | 0.508458 | 8:-60995040 | None:intergenic |
| TGAAACAGAACCCAGAAGCT+AGG | 0.510655 | 8:+60995421 | MsG0880045553.01.T01:CDS |
| TCAGAAGAATGTGGGTCCCT+TGG | 0.517869 | 8:+60995600 | MsG0880045553.01.T01:intron |
| GCCAGTTGTAGAGCTCTGAT+TGG | 0.518062 | 8:-60995081 | None:intergenic |
| AGTTATTAAGGAAGCTGCTA+AGG | 0.525430 | 8:+60995946 | MsG0880045553.01.T01:intron |
| ATCTTGTAATCAAGCATCAC+AGG | 0.547044 | 8:-60995677 | None:intergenic |
| AAGGGTCATAGGTCTGTTGG+TGG | 0.549936 | 8:+60995986 | MsG0880045553.01.T01:CDS |
| CATCTCCATGACGCTCATGC+CGG | 0.569620 | 8:-60995110 | None:intergenic |
| TTGTTATGGGATTACATGTG+TGG | 0.574292 | 8:+60995736 | MsG0880045553.01.T01:CDS |
| AGTGATAAAGCTGTGAAAGA+AGG | 0.588960 | 8:+60995321 | MsG0880045553.01.T01:CDS |
| TGGATCCGGCATGAGCGTCA+TGG | 0.591664 | 8:+60995105 | MsG0880045553.01.T01:CDS |
| TGCTGGTGCTCAGAAGAATG+TGG | 0.593460 | 8:+60995591 | MsG0880045553.01.T01:intron |
| AGCTCTGATTGGCTTTGAGG+AGG | 0.599001 | 8:-60995070 | None:intergenic |
| ACACATGTAATCCCATAACA+AGG | 0.609241 | 8:-60995734 | None:intergenic |
| TCAGAGCTCTACAACTGGCG+TGG | 0.615515 | 8:+60995085 | MsG0880045553.01.T01:CDS |
| CACATGTAATCCCATAACAA+GGG | 0.618301 | 8:-60995733 | None:intergenic |
| CGGCACGGCGGCGAACTGGG+TGG | 0.623534 | 8:-60995245 | None:intergenic |
| CAATCACATTGTTACACCAA+GGG | 0.645432 | 8:-60995616 | None:intergenic |
| ACATGTAATCCCATAACAAG+GGG | 0.650439 | 8:-60995732 | None:intergenic |
| AACTTCTCAACACCAGCCAA+AGG | 0.652172 | 8:-60996037 | None:intergenic |
| TTTGCAGATATTCAACGGCA+CGG | 0.653215 | 8:-60995260 | None:intergenic |
| GCTGGTGCTCAGAAGAATGT+GGG | 0.653676 | 8:+60995592 | MsG0880045553.01.T01:intron |
| ACAATCACATTGTTACACCA+AGG | 0.658149 | 8:-60995617 | None:intergenic |
| GAAGACGCGATCTGAGAATG+GGG | 0.675572 | 8:-60995010 | None:intergenic |
| GCAGATATTCAACGGCACGG+CGG | 0.754213 | 8:-60995257 | None:intergenic |
| GTCATGGAGATGAGTCACAG+AGG | 0.791298 | 8:+60995121 | MsG0880045553.01.T01:CDS |
| CATGTAATCCCATAACAAGG+GGG | 0.797141 | 8:-60995731 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATCCCATTTTTATTACT+GGG | - | Chr8:60995505-60995524 | None:intergenic | 20.0% |
| ! | ATTGTGAGAAATGATTTGAT+TGG | + | Chr8:60995635-60995654 | MsG0880045553.01.T01:CDS | 25.0% |
| ! | TGTTTCAATTCATCAAAAGA+TGG | - | Chr8:60995408-60995427 | None:intergenic | 25.0% |
| !! | CAGTAATAAAAATGGGATTT+TGG | + | Chr8:60995504-60995523 | MsG0880045553.01.T01:intron | 25.0% |
| !!! | CAAAATCCCATTTTTATTAC+TGG | - | Chr8:60995506-60995525 | None:intergenic | 25.0% |
| AATTTACAATGCTATGCCTT+TGG | + | Chr8:60996021-60996040 | MsG0880045553.01.T01:CDS | 30.0% | |
| ATTGTAAACCAAACGTGATT+TGG | + | Chr8:60995352-60995371 | MsG0880045553.01.T01:CDS | 30.0% | |
| CAACACCCAGTAATAAAAAT+GGG | + | Chr8:60995497-60995516 | MsG0880045553.01.T01:intron | 30.0% | |
| TTGTGCTAATGAAACATTCA+TGG | + | Chr8:60995455-60995474 | MsG0880045553.01.T01:intron | 30.0% | |
| ! | TATTCCGTTCTTTTTCTTCA+AGG | + | Chr8:60995214-60995233 | MsG0880045553.01.T01:intron | 30.0% |
| !! | AAATTTGGTTTGATCTATGC+TGG | + | Chr8:60995574-60995593 | MsG0880045553.01.T01:intron | 30.0% |
| AAAAAGAACGGAATATTCCG+AGG | - | Chr8:60995209-60995228 | None:intergenic | 35.0% | |
| ACAATCACATTGTTACACCA+AGG | - | Chr8:60995620-60995639 | None:intergenic | 35.0% | |
| ACACATGTAATCCCATAACA+AGG | - | Chr8:60995737-60995756 | None:intergenic | 35.0% | |
| ACATGTAATCCCATAACAAG+GGG | - | Chr8:60995735-60995754 | None:intergenic | 35.0% | |
| AGTGATAAAGCTGTGAAAGA+AGG | + | Chr8:60995321-60995340 | MsG0880045553.01.T01:CDS | 35.0% | |
| AGTTATTAAGGAAGCTGCTA+AGG | + | Chr8:60995946-60995965 | MsG0880045553.01.T01:intron | 35.0% | |
| ATATGCAAAAACCTAGCTTC+TGG | - | Chr8:60995435-60995454 | None:intergenic | 35.0% | |
| ATCTTGTAATCAAGCATCAC+AGG | - | Chr8:60995680-60995699 | None:intergenic | 35.0% | |
| ATGCTATGATGAGAGAGTAA+TGG | + | Chr8:60995841-60995860 | MsG0880045553.01.T01:intron | 35.0% | |
| ATTCCGAGGAGATATTCAAA+AGG | - | Chr8:60995195-60995214 | None:intergenic | 35.0% | |
| CAATCACATTGTTACACCAA+GGG | - | Chr8:60995619-60995638 | None:intergenic | 35.0% | |
| CACATGTAATCCCATAACAA+GGG | - | Chr8:60995736-60995755 | None:intergenic | 35.0% | |
| CCAAATTTCGAAACATCAAC+AGG | - | Chr8:60995562-60995581 | None:intergenic | 35.0% | |
| CCAACACCCAGTAATAAAAA+TGG | + | Chr8:60995496-60995515 | MsG0880045553.01.T01:intron | 35.0% | |
| CCTGTTGATGTTTCGAAATT+TGG | + | Chr8:60995559-60995578 | MsG0880045553.01.T01:intron | 35.0% | |
| GAGAATATGGTTCAGCTTAA+GGG | + | Chr8:60995968-60995987 | MsG0880045553.01.T01:CDS | 35.0% | |
| GATGAATGTTCCTTTCACTT+TGG | + | Chr8:60995903-60995922 | MsG0880045553.01.T01:intron | 35.0% | |
| GATTGGAAGGTGAGTTATTA+AGG | + | Chr8:60995934-60995953 | MsG0880045553.01.T01:intron | 35.0% | |
| TATGCAAAAACCTAGCTTCT+GGG | - | Chr8:60995434-60995453 | None:intergenic | 35.0% | |
| TCAGATTTCTCCAAAGTGAA+AGG | - | Chr8:60995916-60995935 | None:intergenic | 35.0% | |
| TGCTATGATGAGAGAGTAAT+GGG | + | Chr8:60995842-60995861 | MsG0880045553.01.T01:intron | 35.0% | |
| TTCCGAGGAGATATTCAAAA+GGG | - | Chr8:60995194-60995213 | None:intergenic | 35.0% | |
| TTGTTATGGGATTACATGTG+TGG | + | Chr8:60995736-60995755 | MsG0880045553.01.T01:CDS | 35.0% | |
| TTTCGAAACATCAACAGGTT+TGG | - | Chr8:60995557-60995576 | None:intergenic | 35.0% | |
| TTTGGAGAAATCTGATTGGA+AGG | + | Chr8:60995921-60995940 | MsG0880045553.01.T01:intron | 35.0% | |
| ! | TACCCTTTTGAATATCTCCT+CGG | + | Chr8:60995189-60995208 | MsG0880045553.01.T01:intron | 35.0% |
| ! | TCACTTTGGAGAAATCTGAT+TGG | + | Chr8:60995917-60995936 | MsG0880045553.01.T01:intron | 35.0% |
| ! | TGACTCAGCTTTTTGGATAA+TGG | - | Chr8:60995161-60995180 | None:intergenic | 35.0% |
| !! | CCATTTTTATTACTGGGTGT+TGG | - | Chr8:60995499-60995518 | None:intergenic | 35.0% |
| !! | GTCGTTTTGCAGATATTCAA+CGG | - | Chr8:60995268-60995287 | None:intergenic | 35.0% |
| !! | TTTGAGGATTTGTTGGAACA+AGG | + | Chr8:60995765-60995784 | MsG0880045553.01.T01:intron | 35.0% |
| !!! | GTTTGGTTTTGAGGATTTGT+TGG | + | Chr8:60995758-60995777 | MsG0880045553.01.T01:intron | 35.0% |
| ATGGGATTACATGTGTGGTT+TGG | + | Chr8:60995741-60995760 | MsG0880045553.01.T01:intron | 40.0% | |
| CATGTAATCCCATAACAAGG+GGG | - | Chr8:60995734-60995753 | None:intergenic | 40.0% | |
| GACCTAACAGATTTCTCAAC+AGG | - | Chr8:60995880-60995899 | None:intergenic | 40.0% | |
| GGAGAATATGGTTCAGCTTA+AGG | + | Chr8:60995967-60995986 | MsG0880045553.01.T01:CDS | 40.0% | |
| GTCCTGTTGAGAAATCTGTT+AGG | + | Chr8:60995875-60995894 | MsG0880045553.01.T01:intron | 40.0% | |
| TACAATACACCCCCTTGTTA+TGG | + | Chr8:60995722-60995741 | MsG0880045553.01.T01:CDS | 40.0% | |
| TTTGCAGATATTCAACGGCA+CGG | - | Chr8:60995263-60995282 | None:intergenic | 40.0% | |
| TTTGTTGGAACAAGGTGGTT+TGG | + | Chr8:60995773-60995792 | MsG0880045553.01.T01:intron | 40.0% | |
| ! | ACAATACACCCCCTTGTTAT+GGG | + | Chr8:60995723-60995742 | MsG0880045553.01.T01:CDS | 40.0% |
| ! | GCTGTTGATTACATCGTTAC+CGG | + | Chr8:60995291-60995310 | MsG0880045553.01.T01:CDS | 40.0% |
| ! | TCCGTTCTTTTTCTTCAAGG+CGG | + | Chr8:60995217-60995236 | MsG0880045553.01.T01:intron | 40.0% |
| !! | AAACCAAACGTGATTTGGTC+TGG | + | Chr8:60995357-60995376 | MsG0880045553.01.T01:CDS | 40.0% |
| !! | AACCAAACGTGATTTGGTCT+GGG | + | Chr8:60995358-60995377 | MsG0880045553.01.T01:CDS | 40.0% |
| !!! | ACATGTGTGGTTTGGTTTTG+AGG | + | Chr8:60995749-60995768 | MsG0880045553.01.T01:intron | 40.0% |
| AACTTCTCAACACCAGCCAA+AGG | - | Chr8:60996040-60996059 | None:intergenic | 45.0% | |
| CTTAAGGGTCATAGGTCTGT+TGG | + | Chr8:60995983-60996002 | MsG0880045553.01.T01:CDS | 45.0% | |
| GCCGCCTTGAAGAAAAAGAA+CGG | - | Chr8:60995221-60995240 | None:intergenic | 45.0% | |
| GGAAGCTGCTAAGGAGAATA+TGG | + | Chr8:60995955-60995974 | MsG0880045553.01.T01:intron | 45.0% | |
| TACAATGCTATGCCTTTGGC+TGG | + | Chr8:60996025-60996044 | MsG0880045553.01.T01:CDS | 45.0% | |
| TGAAACAGAACCCAGAAGCT+AGG | + | Chr8:60995421-60995440 | MsG0880045553.01.T01:CDS | 45.0% | |
| TGAAGACGCGATCTGAGAAT+GGG | - | Chr8:60995014-60995033 | None:intergenic | 45.0% | |
| TGGTTCAGCTTAAGGGTCAT+AGG | + | Chr8:60995975-60995994 | MsG0880045553.01.T01:CDS | 45.0% | |
| TTCCCAGACCAAATCACGTT+TGG | - | Chr8:60995363-60995382 | None:intergenic | 45.0% | |
| TTGAAGACGCGATCTGAGAA+TGG | - | Chr8:60995015-60995034 | None:intergenic | 45.0% | |
| ! | AGCTTTATCACTCCACGAAC+CGG | - | Chr8:60995313-60995332 | None:intergenic | 45.0% |
| ! | GCAGATCTGACTCAGCTTTT+TGG | - | Chr8:60995168-60995187 | None:intergenic | 45.0% |
| ! | TTTGGCTGGTGTTGAGAAGT+TGG | + | Chr8:60996039-60996058 | MsG0880045553.01.T01:CDS | 45.0% |
| !! | ATTACATCGTTACCGGTTCG+TGG | + | Chr8:60995298-60995317 | MsG0880045553.01.T01:CDS | 45.0% |
| !! | CTTTGAGGAGGACGTTTTCA+GGG | - | Chr8:60995061-60995080 | None:intergenic | 45.0% |
| !! | GAGGATTTGTTGGAACAAGG+TGG | + | Chr8:60995768-60995787 | MsG0880045553.01.T01:intron | 45.0% |
| !! | TAGAGCTCTGATTGGCTTTG+AGG | - | Chr8:60995076-60995095 | None:intergenic | 45.0% |
| AAGGGTCATAGGTCTGTTGG+TGG | + | Chr8:60995986-60996005 | MsG0880045553.01.T01:CDS | 50.0% | |
| CTGAGAATGGGGTTGGGTTT+GGG | - | Chr8:60995002-60995021 | None:intergenic | 50.0% | |
| GAAGACGCGATCTGAGAATG+GGG | - | Chr8:60995013-60995032 | None:intergenic | 50.0% | |
| GCCAATCAGAGCTCTACAAC+TGG | + | Chr8:60995080-60995099 | MsG0880045553.01.T01:CDS | 50.0% | |
| GCTGGTGCTCAGAAGAATGT+GGG | + | Chr8:60995592-60995611 | MsG0880045553.01.T01:intron | 50.0% | |
| GTCATGGAGATGAGTCACAG+AGG | + | Chr8:60995121-60995140 | MsG0880045553.01.T01:CDS | 50.0% | |
| TCAGAAGAATGTGGGTCCCT+TGG | + | Chr8:60995600-60995619 | MsG0880045553.01.T01:intron | 50.0% | |
| TCTGAGAATGGGGTTGGGTT+TGG | - | Chr8:60995003-60995022 | None:intergenic | 50.0% | |
| TGAGAATGGGGTTGGGTTTG+GGG | - | Chr8:60995001-60995020 | None:intergenic | 50.0% | |
| TGCTGGTGCTCAGAAGAATG+TGG | + | Chr8:60995591-60995610 | MsG0880045553.01.T01:intron | 50.0% | |
| ! | GCCAGTTGTAGAGCTCTGAT+TGG | - | Chr8:60995084-60995103 | None:intergenic | 50.0% |
| !! | AGCTCTGATTGGCTTTGAGG+AGG | - | Chr8:60995073-60995092 | None:intergenic | 50.0% |
| !!! | GCTTTGAGGAGGACGTTTTC+AGG | - | Chr8:60995062-60995081 | None:intergenic | 50.0% |
| ACGCGATCTGAGAATGGGGT+TGG | - | Chr8:60995009-60995028 | None:intergenic | 55.0% | |
| CATCTCCATGACGCTCATGC+CGG | - | Chr8:60995113-60995132 | None:intergenic | 55.0% | |
| CGCGATCTGAGAATGGGGTT+GGG | - | Chr8:60995008-60995027 | None:intergenic | 55.0% | |
| CTCTACAACTGGCGTGGATC+CGG | + | Chr8:60995091-60995110 | MsG0880045553.01.T01:CDS | 55.0% | |
| GCAGATATTCAACGGCACGG+CGG | - | Chr8:60995260-60995279 | None:intergenic | 55.0% | |
| TCAGAGCTCTACAACTGGCG+TGG | + | Chr8:60995085-60995104 | MsG0880045553.01.T01:CDS | 55.0% | |
| ! | GGCTGGTGTTGAGAAGTTGG+TGG | + | Chr8:60996042-60996061 | MsG0880045553.01.T01:CDS | 55.0% |
| !! | TGAGGAGGACGTTTTCAGGG+AGG | - | Chr8:60995058-60995077 | None:intergenic | 55.0% |
| TGGATCCGGCATGAGCGTCA+TGG | + | Chr8:60995105-60995124 | MsG0880045553.01.T01:CDS | 60.0% | |
| ! | AATGGGGTTGGGTTTGGGGC+TGG | - | Chr8:60994997-60995016 | None:intergenic | 60.0% |
| ! | ATGGGGTTGGGTTTGGGGCT+GGG | - | Chr8:60994996-60995015 | None:intergenic | 60.0% |
| ! | TTGGGTTTGGGGCTGGGCTT+GGG | - | Chr8:60994990-60995009 | None:intergenic | 60.0% |
| !! | GACGTTTTCAGGGAGGTGGC+GGG | - | Chr8:60995051-60995070 | None:intergenic | 60.0% |
| !! | GGACGTTTTCAGGGAGGTGG+CGG | - | Chr8:60995052-60995071 | None:intergenic | 60.0% |
| !! | GGAGGACGTTTTCAGGGAGG+TGG | - | Chr8:60995055-60995074 | None:intergenic | 60.0% |
| !! | TTGGGCTTGGTGGTTGGTGG+CGG | - | Chr8:60994972-60994991 | None:intergenic | 60.0% |
| CGCGTCTTCAACTTCGCCGC+TGG | + | Chr8:60995024-60995043 | MsG0880045553.01.T01:CDS | 65.0% | |
| ! | GTTGGGTTTGGGGCTGGGCT+TGG | - | Chr8:60994991-60995010 | None:intergenic | 65.0% |
| ! | TTTGGGGCTGGGCTTGGGCT+TGG | - | Chr8:60994985-60995004 | None:intergenic | 65.0% |
| !! | CTGGGCTTGGGCTTGGTGGT+TGG | - | Chr8:60994978-60994997 | None:intergenic | 65.0% |
| !! | GGCTTGGGCTTGGTGGTTGG+TGG | - | Chr8:60994975-60994994 | None:intergenic | 65.0% |
| CAACGGCACGGCGGCGAACT+GGG | - | Chr8:60995251-60995270 | None:intergenic | 70.0% | |
| TCAACGGCACGGCGGCGAAC+TGG | - | Chr8:60995252-60995271 | None:intergenic | 70.0% | |
| CACGGCGGCGAACTGGGTGG+TGG | - | Chr8:60995245-60995264 | None:intergenic | 75.0% | |
| GGGGCTGGGCTTGGGCTTGG+TGG | - | Chr8:60994982-60995001 | None:intergenic | 75.0% | |
| !! | CAGGGAGGTGGCGGGTCCAG+CGG | - | Chr8:60995043-60995062 | None:intergenic | 75.0% |
| ! | CGGCACGGCGGCGAACTGGG+TGG | - | Chr8:60995248-60995267 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 60994964 | 60996099 | 60994964 | ID=MsG0880045553.01;Name=MsG0880045553.01 |
| Chr8 | mRNA | 60994964 | 60996099 | 60994964 | ID=MsG0880045553.01.T01;Parent=MsG0880045553.01;Name=MsG0880045553.01.T01;_AED=0.49;_eAED=0.52;_QI=0|0|0|1|1|1|4|0|227 |
| Chr8 | exon | 60994964 | 60995142 | 60994964 | ID=MsG0880045553.01.T01:exon:31039;Parent=MsG0880045553.01.T01 |
| Chr8 | exon | 60995236 | 60995442 | 60995236 | ID=MsG0880045553.01.T01:exon:31040;Parent=MsG0880045553.01.T01 |
| Chr8 | exon | 60995604 | 60995757 | 60995604 | ID=MsG0880045553.01.T01:exon:31041;Parent=MsG0880045553.01.T01 |
| Chr8 | exon | 60995956 | 60996099 | 60995956 | ID=MsG0880045553.01.T01:exon:31042;Parent=MsG0880045553.01.T01 |
| Chr8 | CDS | 60994964 | 60995142 | 60994964 | ID=MsG0880045553.01.T01:cds;Parent=MsG0880045553.01.T01 |
| Chr8 | CDS | 60995236 | 60995442 | 60995236 | ID=MsG0880045553.01.T01:cds;Parent=MsG0880045553.01.T01 |
| Chr8 | CDS | 60995604 | 60995757 | 60995604 | ID=MsG0880045553.01.T01:cds;Parent=MsG0880045553.01.T01 |
| Chr8 | CDS | 60995956 | 60996099 | 60995956 | ID=MsG0880045553.01.T01:cds;Parent=MsG0880045553.01.T01 |
| Gene Sequence |
| Protein sequence |
